AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51014

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51014.t1 MTR_3g438050 91.641 323 27 0 1 323 1 323 0.0 609
MS.gene51014.t1 MTR_8g030930 62.162 333 120 5 1 328 1 332 1.42e-140 403
MS.gene51014.t1 MTR_5g063430 57.911 316 126 3 2 316 1 310 1.68e-134 385
MS.gene51014.t1 MTR_1g088160 43.373 332 170 7 7 326 8 333 1.02e-88 271
MS.gene51014.t1 MTR_2g058840 42.638 326 161 6 9 323 12 322 9.72e-85 262
MS.gene51014.t1 MTR_2g058670 42.638 326 163 7 9 323 12 324 7.19e-84 259
MS.gene51014.t1 MTR_2g058640 40.615 325 171 6 9 323 12 324 9.75e-81 251
MS.gene51014.t1 MTR_5g097860 41.776 304 168 5 25 323 23 322 1.75e-80 248
MS.gene51014.t1 MTR_2g049400 40.061 327 183 6 9 328 11 331 1.20e-76 240
MS.gene51014.t1 MTR_2g435640 41.100 309 174 5 26 328 52 358 1.45e-76 241
MS.gene51014.t1 MTR_4g083660 42.122 311 166 8 24 327 6 309 4.58e-75 235
MS.gene51014.t1 MTR_6g028080 43.667 300 148 8 27 313 30 321 6.91e-75 236
MS.gene51014.t1 MTR_4g120320 40.000 310 177 5 26 328 51 358 4.41e-72 229
MS.gene51014.t1 MTR_4g084050 42.357 314 160 7 7 311 5 306 3.60e-70 223
MS.gene51014.t1 MTR_8g008765 39.185 319 175 6 1 311 1 308 3.40e-69 219
MS.gene51014.t1 MTR_8g009810 38.988 336 187 10 4 328 8 336 5.63e-69 221
MS.gene51014.t1 MTR_3g054320 39.466 337 179 8 9 328 4 332 6.04e-69 221
MS.gene51014.t1 MTR_3g084380 39.157 332 183 8 11 328 1 327 8.94e-69 220
MS.gene51014.t1 MTR_8g010080 40.252 318 173 8 1 311 1 308 2.48e-68 219
MS.gene51014.t1 MTR_2g103650 39.375 320 178 9 7 315 8 322 4.51e-68 218
MS.gene51014.t1 MTR_5g043350 41.304 322 167 8 7 314 5 318 1.19e-67 217
MS.gene51014.t1 MTR_8g010070 39.329 328 181 8 5 324 7 324 1.19e-67 217
MS.gene51014.t1 MTR_7g091840 39.088 307 176 7 21 320 59 361 5.88e-67 215
MS.gene51014.t1 MTR_3g030540 41.515 330 179 10 5 327 49 371 1.60e-66 215
MS.gene51014.t1 MTR_7g091850 39.088 307 176 6 13 312 60 362 4.29e-66 214
MS.gene51014.t1 MTR_1g052315 40.391 307 171 7 27 326 64 365 6.42e-66 214
MS.gene51014.t1 MTR_8g065030 38.065 310 181 6 26 328 64 369 8.06e-66 214
MS.gene51014.t1 MTR_2g103410 38.176 296 172 5 27 315 59 350 2.25e-65 213
MS.gene51014.t1 MTR_2g100040 39.936 313 150 7 2 310 3 281 3.02e-65 210
MS.gene51014.t1 MTR_8g010110 40.345 290 159 6 26 311 30 309 7.61e-65 209
MS.gene51014.t1 MTR_8g010040 38.782 312 174 7 7 311 9 310 1.99e-64 208
MS.gene51014.t1 MTR_7g035415 37.267 322 176 11 5 311 10 320 4.39e-64 206
MS.gene51014.t1 MTR_3g084360 41.497 294 154 6 27 311 24 308 7.61e-64 207
MS.gene51014.t1 MTR_1g086390 37.188 320 182 7 23 327 77 392 1.73e-63 209
MS.gene51014.t1 MTR_8g010090 38.276 290 165 6 26 311 30 309 1.37e-62 204
MS.gene51014.t1 MTR_2g060350 40.062 322 172 11 17 328 68 378 2.02e-62 205
MS.gene51014.t1 MTR_6g005630 35.922 309 185 7 24 327 42 342 5.62e-62 203
MS.gene51014.t1 MTR_7g110050 35.625 320 188 7 23 328 63 378 5.62e-60 199
MS.gene51014.t1 MTR_0157s0060 42.561 289 145 8 30 311 1 275 1.30e-58 193
MS.gene51014.t1 MTR_4g034020 42.561 289 145 8 30 311 1 275 1.30e-58 193
MS.gene51014.t1 MTR_2g029170 41.758 273 147 8 61 327 30 296 2.69e-58 192
MS.gene51014.t1 MTR_4g094715 35.032 314 187 5 26 326 64 373 5.46e-58 194
MS.gene51014.t1 MTR_8g010050 40.714 280 152 8 5 277 7 279 4.32e-57 189
MS.gene51014.t1 MTR_2g103410 36.496 274 166 4 27 293 59 331 9.16e-57 187
MS.gene51014.t1 MTR_8g077320 38.206 301 143 8 25 311 31 302 2.53e-56 187
MS.gene51014.t1 MTR_1g012390 37.778 315 182 10 7 311 5 315 3.12e-56 187
MS.gene51014.t1 MTR_5g033680 34.286 315 190 5 25 327 57 366 4.96e-56 189
MS.gene51014.t1 MTR_5g034090 32.530 332 190 6 27 327 121 449 2.85e-54 186
MS.gene51014.t1 MTR_1g013730 34.036 332 191 10 7 327 4 318 2.33e-53 179
MS.gene51014.t1 MTR_8g065010 31.845 336 194 6 24 327 104 436 2.28e-52 180
MS.gene51014.t1 MTR_1g013740 32.845 341 197 10 2 327 3 326 2.84e-51 174
MS.gene51014.t1 MTR_2g032710 33.758 314 191 5 26 326 66 375 1.13e-48 169
MS.gene51014.t1 MTR_5g034090 34.276 283 155 5 27 278 121 403 1.68e-48 168
MS.gene51014.t1 MTR_6g005630 33.657 309 169 9 24 327 42 319 8.03e-48 166
MS.gene51014.t1 MTR_8g008700 39.301 229 125 4 86 311 14 231 1.94e-45 156
MS.gene51014.t1 MTR_7g113910 38.095 231 109 6 87 315 74 272 1.85e-42 151
MS.gene51014.t1 MTR_8g031180 35.088 228 119 5 87 311 15 216 3.61e-32 121
MS.gene51014.t1 MTR_7g072360 44.037 109 39 1 169 277 42 128 1.16e-22 92.0
MS.gene51014.t1 MTR_7g072370 59.016 61 25 0 222 282 1 61 1.64e-17 75.9
MS.gene51014.t1 MTR_7g088550 24.199 281 172 8 31 277 54 327 7.87e-12 66.2
MS.gene51014.t1 MTR_3g449590 24.688 320 186 11 6 291 12 310 2.35e-11 64.7
MS.gene51014.t1 MTR_4g120730 23.962 313 192 10 28 305 41 342 3.78e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51014.t1 AT2G15460 52.229 314 145 5 7 318 13 323 1.22e-104 312
MS.gene51014.t1 AT2G15450 51.911 314 146 5 7 318 13 323 1.86e-103 309
MS.gene51014.t1 AT2G33160 50.799 313 151 3 9 319 14 325 5.31e-103 316
MS.gene51014.t1 AT2G15470 51.592 314 147 5 7 318 13 323 2.63e-102 306
MS.gene51014.t1 AT1G43090 50.804 311 149 4 10 318 15 323 2.68e-102 308
MS.gene51014.t1 AT1G43080 49.839 311 152 4 10 318 15 323 6.47e-102 305
MS.gene51014.t1 AT1G17150 48.889 315 158 3 5 318 12 324 4.29e-101 303
MS.gene51014.t1 AT4G13760 48.882 313 156 4 8 318 13 323 5.80e-101 303
MS.gene51014.t1 AT2G40310 49.840 313 153 4 8 318 13 323 3.63e-100 301
MS.gene51014.t1 AT1G43100 49.839 311 152 4 10 318 15 323 3.07e-99 300
MS.gene51014.t1 AT1G78400 50.680 294 143 2 26 318 34 326 3.42e-98 296
MS.gene51014.t1 AT2G26620 51.623 308 145 4 13 318 18 323 8.01e-98 295
MS.gene51014.t1 AT2G43880 44.966 298 156 5 27 321 31 323 5.87e-88 267
MS.gene51014.t1 AT2G43880 44.408 304 161 5 27 327 31 329 1.47e-87 268
MS.gene51014.t1 AT3G07830 44.128 281 156 1 40 320 34 313 1.27e-85 263
MS.gene51014.t1 AT5G48140 44.014 284 157 2 40 323 34 315 2.07e-85 263
MS.gene51014.t1 AT3G07840 43.310 284 160 1 40 323 34 316 3.28e-85 262
MS.gene51014.t1 AT3G07820 41.720 314 172 3 23 326 7 319 2.78e-84 259
MS.gene51014.t1 AT1G05650 41.975 324 179 6 8 328 10 327 1.08e-83 258
MS.gene51014.t1 AT2G43890 40.308 325 185 6 7 328 10 328 1.69e-83 258
MS.gene51014.t1 AT4G18180 42.763 304 166 5 26 323 38 339 4.92e-83 258
MS.gene51014.t1 AT1G05660 41.049 324 182 6 8 328 10 327 3.03e-81 252
MS.gene51014.t1 AT2G43870 42.638 326 169 8 7 327 8 320 4.33e-81 251
MS.gene51014.t1 AT3G59850 45.928 307 154 8 27 327 23 323 1.13e-80 250
MS.gene51014.t1 AT1G02790 42.905 296 165 3 26 321 51 342 1.46e-80 251
MS.gene51014.t1 AT3G59850 45.631 309 156 8 25 327 65 367 2.37e-80 251
MS.gene51014.t1 AT3G14040 43.894 303 157 5 27 323 71 366 3.35e-75 238
MS.gene51014.t1 AT3G07850 44.610 269 138 4 61 323 102 365 8.40e-75 237
MS.gene51014.t1 AT1G80170 38.788 330 185 7 10 326 31 356 2.45e-72 231
MS.gene51014.t1 AT3G57510 40.391 307 172 6 29 328 70 372 3.15e-72 230
MS.gene51014.t1 AT5G17200 42.222 315 161 6 7 311 13 316 3.29e-72 229
MS.gene51014.t1 AT2G41850 39.623 318 181 6 18 328 59 372 3.59e-71 227
MS.gene51014.t1 AT4G35670 41.100 309 166 7 27 328 24 323 2.39e-69 221
MS.gene51014.t1 AT3G07970 41.558 308 168 8 27 327 71 373 4.02e-69 222
MS.gene51014.t1 AT2G43860 40.252 318 178 7 16 327 22 333 4.70e-68 218
MS.gene51014.t1 AT1G65570 39.514 329 184 10 5 326 11 331 3.52e-65 211
MS.gene51014.t1 AT3G15720 39.423 312 166 8 5 311 7 300 5.97e-65 212
MS.gene51014.t1 AT3G15720 39.423 312 166 8 5 311 8 301 6.87e-65 212
MS.gene51014.t1 AT1G80170 37.710 297 170 6 10 294 31 324 8.80e-64 205
MS.gene51014.t1 AT3G15720 39.423 312 163 8 5 311 7 297 2.26e-63 207
MS.gene51014.t1 AT5G44840 38.485 330 181 10 7 328 9 324 2.45e-63 206
MS.gene51014.t1 AT1G02460 35.938 320 183 7 26 327 88 403 2.92e-63 208
MS.gene51014.t1 AT1G23460 35.691 311 189 6 25 328 41 347 6.40e-61 201
MS.gene51014.t1 AT1G23460 35.691 311 189 6 25 328 65 371 1.03e-60 201
MS.gene51014.t1 AT3G26610 36.334 311 185 5 26 327 66 372 3.89e-60 199
MS.gene51014.t1 AT5G14650 37.299 311 182 8 24 328 48 351 4.77e-60 198
MS.gene51014.t1 AT1G70500 33.962 318 197 7 19 328 59 371 5.55e-59 196
MS.gene51014.t1 AT5G27530 40.339 295 147 10 26 311 52 326 1.94e-58 195
MS.gene51014.t1 AT1G48100 34.505 313 190 3 26 326 79 388 2.21e-58 195
MS.gene51014.t1 AT5G39910 35.505 307 162 7 25 322 34 313 1.34e-56 188
MS.gene51014.t1 AT1G56710 35.331 317 186 6 26 327 47 359 9.32e-56 187
MS.gene51014.t1 AT1G10640 33.433 335 189 6 24 327 116 447 9.43e-56 189
MS.gene51014.t1 AT4G01890 32.831 332 196 8 18 326 51 378 2.37e-55 187
MS.gene51014.t1 AT1G60590 31.642 335 192 6 27 327 123 454 1.46e-52 181
MS.gene51014.t1 AT4G32370 37.153 288 158 11 41 315 49 326 9.68e-52 174
MS.gene51014.t1 AT3G15720 40.726 248 131 6 68 311 2 237 2.47e-51 174
MS.gene51014.t1 AT5G44830 38.163 283 148 9 54 328 2 265 8.16e-51 172
MS.gene51014.t1 AT5G14650 38.697 261 150 7 24 278 48 304 9.92e-51 171
MS.gene51014.t1 AT4G32380 35.689 283 166 6 41 316 41 314 2.05e-49 171
MS.gene51014.t1 AT4G35670 41.071 224 123 3 105 328 2 216 2.36e-46 159
MS.gene51014.t1 AT1G80140 37.891 256 142 7 64 311 6 252 3.21e-45 157
MS.gene51014.t1 AT4G32380 33.451 284 172 6 41 317 41 314 1.16e-44 157
MS.gene51014.t1 AT4G32375 38.028 213 123 2 100 312 8 211 4.43e-44 156
MS.gene51014.t1 AT5G41870 25.472 318 184 11 7 277 11 322 9.21e-17 81.3
MS.gene51014.t1 AT2G23900 25.965 285 163 10 31 277 60 334 1.44e-13 71.6
MS.gene51014.t1 AT4G23820 25.088 283 174 10 27 277 41 317 7.71e-12 66.2
MS.gene51014.t1 AT1G19170 24.085 328 191 12 26 311 86 397 3.75e-11 64.3

Find 59 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCATATATGTTCCTTT+TGG 0.225532 3.2:+30484902 None:intergenic
ATTGGAAGACGGGGACAATT+AGG 0.285173 3.2:+30484680 None:intergenic
CATTTATCAGTCGCAAAATA+TGG 0.292416 3.2:+30484803 None:intergenic
GATCCCAAAAGGAACATATA+TGG 0.319723 3.2:-30484906 MS.gene51014:CDS
TTAGTGCTGCAACCACGATT+TGG 0.370578 3.2:+30483394 None:intergenic
TCCCCTCACTAAAACTTTGA+AGG 0.385919 3.2:-30483491 MS.gene51014:CDS
CAAAATTGAAGGGACCTTGA+AGG 0.390336 3.2:-30484837 MS.gene51014:CDS
CAATGAGAGATTGCAATAGT+AGG 0.394086 3.2:+30482636 None:intergenic
TTGGAAGACGGGGACAATTA+GGG 0.408182 3.2:+30484681 None:intergenic
GGAAGTCTTGGAAAGTTTGA+TGG 0.410700 3.2:-30483598 MS.gene51014:CDS
TGCTATTAAAAGATCTCAAA+TGG 0.416555 3.2:+30483854 None:intergenic
GGAGTTAGCGTTGGAAGTCT+TGG 0.418906 3.2:-30483610 MS.gene51014:CDS
GTGAAGCAAGTAATCTTCAT+TGG 0.433473 3.2:-30484884 MS.gene51014:CDS
TCTGTGTTTGGGCTATCACC+CGG 0.444875 3.2:+30483766 None:intergenic
TGGACAACTTTCAAAATTGA+AGG 0.449368 3.2:-30484848 MS.gene51014:CDS
TGGATCAGTTGGAGCCTTCA+AGG 0.450279 3.2:+30484823 None:intergenic
AATTTGATCGTGAGTGGACC+TGG 0.453283 3.2:-30484758 MS.gene51014:CDS
CTGTGTTTGGGCTATCACCC+GGG 0.456362 3.2:+30483767 None:intergenic
ATTGGATGGTCAAGGATCTT+CGG 0.463981 3.2:-30484732 MS.gene51014:CDS
TATTCTTGATCAATAAGAAT+GGG 0.473017 3.2:+30483421 None:intergenic
GATTGTATCGCGATGGTCTC+TGG 0.473792 3.2:-30483679 MS.gene51014:CDS
CGTGAGTGGACCTGGGACAT+TGG 0.479525 3.2:-30484750 MS.gene51014:CDS
ACCTTTAGTGACACAACTAA+TGG 0.486200 3.2:-30483538 MS.gene51014:CDS
AAAGTTGTCCATCCTTTGCA+TGG 0.492583 3.2:+30484860 None:intergenic
AGTGATGCATGCAAATCAAA+TGG 0.505240 3.2:-30484944 MS.gene51014:CDS
AATGAGAGATTGCAATAGTA+GGG 0.508164 3.2:+30482637 None:intergenic
TGAACTTACAATTGGAAGAC+GGG 0.511895 3.2:+30484670 None:intergenic
AAAAGATCTCAAATGGTGAA+TGG 0.512142 3.2:+30483861 None:intergenic
GTCGCAAAATATGGATCAGT+TGG 0.512826 3.2:+30484812 None:intergenic
ATATTCTTGATCAATAAGAA+TGG 0.516058 3.2:+30483420 None:intergenic
ATGGTCTTAGAATTAAGACT+TGG 0.524419 3.2:-30483519 MS.gene51014:CDS
ACCATTAGTTGTGTCACTAA+AGG 0.526950 3.2:+30483537 None:intergenic
TCTCTGGTACTAGAAATGTT+TGG 0.528165 3.2:-30483663 MS.gene51014:CDS
ATGGTCAAGGATCTTCGGCT+TGG 0.534419 3.2:-30484727 MS.gene51014:CDS
AACTACGGTGCAATCGCAGA+TGG 0.556221 3.2:-30485101 MS.gene51014:CDS
GTGAATAATTTGATCGTGAG+TGG 0.559550 3.2:-30484764 MS.gene51014:CDS
AAATCGTGGTTGCAGCACTA+AGG 0.563344 3.2:-30483392 MS.gene51014:intron
TGTGACAAAATCAAATGTCA+TGG 0.564891 3.2:+30483891 None:intergenic
TGGAGAAACTGATAATAAAG+AGG 0.567699 3.2:-30485081 MS.gene51014:intron
GGACAACTTTCAAAATTGAA+GGG 0.567850 3.2:-30484847 MS.gene51014:CDS
TCATTGGACCATGCAAAGGA+TGG 0.568404 3.2:-30484868 MS.gene51014:CDS
AAAATCAGAATTTCAGCCCC+GGG 0.568624 3.2:-30483784 MS.gene51014:CDS
TGGTCTTAGAATTAAGACTT+GGG 0.575173 3.2:-30483518 MS.gene51014:CDS
CCTGGACATGGAGTTAGCGT+TGG 0.575839 3.2:-30483619 MS.gene51014:CDS
CCTTGACCATCCAATGTCCC+AGG 0.577038 3.2:+30484740 None:intergenic
TCAAGGATCTTCGGCTTGGT+CGG 0.577538 3.2:-30484723 MS.gene51014:CDS
GGTGATAGCCCAAACACAGA+TGG 0.580283 3.2:-30483763 MS.gene51014:CDS
ATCTTCATTGGACCATGCAA+AGG 0.586443 3.2:-30484872 MS.gene51014:CDS
AGTGGACCTGGGACATTGGA+TGG 0.596328 3.2:-30484746 MS.gene51014:CDS
ATGAACTTACAATTGGAAGA+CGG 0.597247 3.2:+30484669 None:intergenic
CGGTGATGATTGTATCGCGA+TGG 0.597983 3.2:-30483686 MS.gene51014:CDS
CCTGGGACATTGGATGGTCA+AGG 0.604515 3.2:-30484740 MS.gene51014:CDS
CCAACGCTAACTCCATGTCC+AGG 0.616367 3.2:+30483619 None:intergenic
CAAGAATATTGTCCAAATCG+TGG 0.629259 3.2:-30483406 MS.gene51014:CDS
TGTGTTTGGGCTATCACCCG+GGG 0.645369 3.2:+30483768 None:intergenic
ATTTGATCGTGAGTGGACCT+GGG 0.645399 3.2:-30484757 MS.gene51014:CDS
CATCGCGATACAATCATCAC+CGG 0.656979 3.2:+30483687 None:intergenic
AGATATTGTGATGAATAACG+TGG 0.711571 3.2:-30483449 MS.gene51014:CDS
GAACTTACAATTGGAAGACG+GGG 0.712367 3.2:+30484671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTAATATTAAAATT+AGG + chr3.2:30484480-30484499 None:intergenic 0.0%
!!! AATATGATTTATCTTTTTAA+CGG - chr3.2:30483811-30483830 MS.gene51014:CDS 10.0%
!! AAATGTAACATTTAACATAT+TGG + chr3.2:30483844-30483863 None:intergenic 15.0%
!! GTTAAAAAGATAAATCATAT+TGG + chr3.2:30483812-30483831 None:intergenic 15.0%
!! TAGAAATAAAAACTAAAATG+TGG + chr3.2:30483649-30483668 None:intergenic 15.0%
!! TTAACATGATATTAATACAT+TGG - chr3.2:30483893-30483912 MS.gene51014:CDS 15.0%
!! TTTAAGAAATAAAAAAGAGA+AGG + chr3.2:30482795-30482814 None:intergenic 15.0%
!!! ATATGATTTATCTTTTTAAC+GGG - chr3.2:30483812-30483831 MS.gene51014:CDS 15.0%
!!! ATTTTTAGGATACATAATTT+TGG - chr3.2:30484757-30484776 MS.gene51014:CDS 15.0%
!!! GTAGAATATAATTTTTTCTA+AGG + chr3.2:30483208-30483227 None:intergenic 15.0%
!!! TTCATGATTTATTTTCATAT+TGG + chr3.2:30483577-30483596 None:intergenic 15.0%
!!! TTTTTAGGATACATAATTTT+GGG - chr3.2:30484758-30484777 MS.gene51014:CDS 15.0%
!! AAGAGAATAACAAATTAGTT+AGG + chr3.2:30482834-30482853 None:intergenic 20.0%
!! ATATTCTTGATCAATAAGAA+TGG + chr3.2:30484409-30484428 None:intergenic 20.0%
!! CAATGAAATAAGTAAACTAT+AGG + chr3.2:30485113-30485132 None:intergenic 20.0%
!! TAATTGAAGCATATATTCTA+TGG - chr3.2:30483761-30483780 MS.gene51014:CDS 20.0%
!! TATTCTTGATCAATAAGAAT+GGG + chr3.2:30484408-30484427 None:intergenic 20.0%
!! TGTTATTCTCTTGTAAATAT+AGG - chr3.2:30482842-30482861 MS.gene51014:intron 20.0%
!! TTAATAGATGAACTTACAAT+TGG + chr3.2:30483167-30483186 None:intergenic 20.0%
!!! AAAGGTAAAATTTTGATTTG+AGG - chr3.2:30484725-30484744 MS.gene51014:CDS 20.0%
!!! ATTTTTTCTAAGGATATCTA+TGG + chr3.2:30483198-30483217 None:intergenic 20.0%
!!! GTTTTTAATGTGTTAAACTA+CGG - chr3.2:30482710-30482729 MS.gene51014:intron 20.0%
!!! TAGTTTTAAATTCCTTTGTT+AGG - chr3.2:30483394-30483413 MS.gene51014:CDS 20.0%
!!! TGAGGTTTACTAATATTTTT+AGG - chr3.2:30484743-30484762 MS.gene51014:CDS 20.0%
!!! TTTAGCAAATTTGATTTAGT+CGG - chr3.2:30484571-30484590 MS.gene51014:intron 20.0%
!!! TTTCTTTTTCTTTATTGTGT+TGG - chr3.2:30484692-30484711 MS.gene51014:CDS 20.0%
!!! TTTTTGAAAGATAAAGTGAA+GGG - chr3.2:30483340-30483359 MS.gene51014:intron 20.0%
!!! TTTTTTGAAAGATAAAGTGA+AGG - chr3.2:30483339-30483358 MS.gene51014:intron 20.0%
! AAAGAAATACAAACTCTCTA+CGG + chr3.2:30484679-30484698 None:intergenic 25.0%
! AAAGATAAATCATATTGGTC+TGG + chr3.2:30483807-30483826 None:intergenic 25.0%
! AACACAGATGGAATAAAAAT+AGG - chr3.2:30484075-30484094 MS.gene51014:intron 25.0%
! AATAATAATCCCTTCACTTT+AGG + chr3.2:30483311-30483330 None:intergenic 25.0%
! AATTGGCAGAAATTAGATTA+TGG + chr3.2:30484856-30484875 None:intergenic 25.0%
! ATAAAAATAGGCAAGTCAAA+CGG - chr3.2:30484087-30484106 MS.gene51014:intron 25.0%
! ATAATAATCCCTTCACTTTA+GGG + chr3.2:30483310-30483329 None:intergenic 25.0%
! GTAAAAGAAAACTAAACAAC+TGG - chr3.2:30485037-30485056 MS.gene51014:intron 25.0%
! TATTCCAATTTATTTCCTCT+TGG + chr3.2:30483273-30483292 None:intergenic 25.0%
! TGCTATTAAAAGATCTCAAA+TGG + chr3.2:30483975-30483994 None:intergenic 25.0%
! TGTGTTGGATATAAGTTAAA+AGG - chr3.2:30484707-30484726 MS.gene51014:CDS 25.0%
! TTAAATTCCTTTGTTAGGAT+TGG - chr3.2:30483399-30483418 MS.gene51014:CDS 25.0%
! TTAACCAAGAGGAAATAAAT+TGG - chr3.2:30483266-30483285 MS.gene51014:intron 25.0%
!! AGTTTTCTTTTACCATCATT+AGG + chr3.2:30485030-30485049 None:intergenic 25.0%
!! ATTTTTATTCCATCTGTGTT+TGG + chr3.2:30484075-30484094 None:intergenic 25.0%
!! TTGAGATCTTTTAATAGCAA+AGG - chr3.2:30483976-30483995 MS.gene51014:intron 25.0%
!! TTTTTATTCCATCTGTGTTT+GGG + chr3.2:30484074-30484093 None:intergenic 25.0%
!!! ACATTTGATTTTGTCACAAA+TGG - chr3.2:30483940-30483959 MS.gene51014:intron 25.0%
!!! GTATCATGATTTTGATTTGA+TGG + chr3.2:30483551-30483570 None:intergenic 25.0%
!!! GTGTTAAAATATTTTTTCCC+AGG - chr3.2:30485165-30485184 MS.gene51014:CDS 25.0%
!!! TACATATGTTTTTAACCAAG+AGG - chr3.2:30483255-30483274 MS.gene51014:intron 25.0%
AAAAGATCTCAAATGGTGAA+TGG + chr3.2:30483968-30483987 None:intergenic 30.0%
AATGAGAGATTGCAATAGTA+GGG + chr3.2:30485192-30485211 None:intergenic 30.0%
ACTATTAAAAACGCGAACAT+TGG - chr3.2:30484114-30484133 MS.gene51014:intron 30.0%
AGATATTGTGATGAATAACG+TGG - chr3.2:30484377-30484396 MS.gene51014:intron 30.0%
ATATTCTACAGATCGATCAA+TGG - chr3.2:30483219-30483238 MS.gene51014:intron 30.0%
ATGAACTTACAATTGGAAGA+CGG + chr3.2:30483160-30483179 None:intergenic 30.0%
CATTTATCAGTCGCAAAATA+TGG + chr3.2:30483026-30483045 None:intergenic 30.0%
GAGGAAATAAATTGGAATAG+CGG - chr3.2:30483274-30483293 MS.gene51014:intron 30.0%
GGACAACTTTCAAAATTGAA+GGG - chr3.2:30482979-30482998 MS.gene51014:intron 30.0%
TAAAAATAGGCAAGTCAAAC+GGG - chr3.2:30484088-30484107 MS.gene51014:intron 30.0%
TAAGTAAACTATAGGCAAGA+TGG + chr3.2:30485105-30485124 None:intergenic 30.0%
TGGACAACTTTCAAAATTGA+AGG - chr3.2:30482978-30482997 MS.gene51014:intron 30.0%
TGGAGAAACTGATAATAAAG+AGG - chr3.2:30482745-30482764 MS.gene51014:intron 30.0%
TGTGACAAAATCAAATGTCA+TGG + chr3.2:30483938-30483957 None:intergenic 30.0%
TTAGGATTGGAGGAATAATT+GGG - chr3.2:30483412-30483431 MS.gene51014:CDS 30.0%
TTTGTCTGTGTAGATTTAGT+CGG - chr3.2:30484608-30484627 MS.gene51014:intron 30.0%
! ATGGTCTTAGAATTAAGACT+TGG - chr3.2:30484307-30484326 MS.gene51014:intron 30.0%
! CATATTTTGCGACTGATAAA+TGG - chr3.2:30483024-30483043 MS.gene51014:intron 30.0%
! GCATATATTCTATGGATTGA+TGG - chr3.2:30483769-30483788 MS.gene51014:CDS 30.0%
! GGTTTTCCACTATGATATTT+TGG + chr3.2:30484996-30485015 None:intergenic 30.0%
! TCACCATATATGTTCCTTTT+GGG + chr3.2:30482926-30482945 None:intergenic 30.0%
! TGGTCTTAGAATTAAGACTT+GGG - chr3.2:30484308-30484327 MS.gene51014:intron 30.0%
! TTCACCATATATGTTCCTTT+TGG + chr3.2:30482927-30482946 None:intergenic 30.0%
AAAAAGAGAAGGAGTGAAGA+TGG + chr3.2:30482784-30482803 None:intergenic 35.0%
AAAAATCAGAATTTCAGCCC+CGG - chr3.2:30484041-30484060 MS.gene51014:intron 35.0%
AATTCCTTTGTTAGGATTGG+AGG - chr3.2:30483402-30483421 MS.gene51014:CDS 35.0%
ACCTTTAGTGACACAACTAA+TGG - chr3.2:30484288-30484307 MS.gene51014:intron 35.0%
AGTGATGCATGCAAATCAAA+TGG - chr3.2:30482882-30482901 MS.gene51014:intron 35.0%
ATAGAAGAAAAACAGTCCAG+TGG - chr3.2:30483608-30483627 MS.gene51014:CDS 35.0%
CAAGAATATTGTCCAAATCG+TGG - chr3.2:30484420-30484439 MS.gene51014:intron 35.0%
CAATGAGAGATTGCAATAGT+AGG + chr3.2:30485193-30485212 None:intergenic 35.0%
CCACCTACAGCAAAATTAAT+TGG + chr3.2:30484873-30484892 None:intergenic 35.0%
GATCCCAAAAGGAACATATA+TGG - chr3.2:30482920-30482939 MS.gene51014:intron 35.0%
GTGAAGCAAGTAATCTTCAT+TGG - chr3.2:30482942-30482961 MS.gene51014:intron 35.0%
GTGAATAATTTGATCGTGAG+TGG - chr3.2:30483062-30483081 MS.gene51014:intron 35.0%
GTGTCGTACAAAAATATCAG+AGG - chr3.2:30484916-30484935 MS.gene51014:CDS 35.0%
GTTAGGATTGGAGGAATAAT+TGG - chr3.2:30483411-30483430 MS.gene51014:CDS 35.0%
TATTCCTCCAATCCTAACAA+AGG + chr3.2:30483409-30483428 None:intergenic 35.0%
TCTCTGGTACTAGAAATGTT+TGG - chr3.2:30484163-30484182 MS.gene51014:intron 35.0%
TGAACTTACAATTGGAAGAC+GGG + chr3.2:30483159-30483178 None:intergenic 35.0%
! ACCATTAGTTGTGTCACTAA+AGG + chr3.2:30484292-30484311 None:intergenic 35.0%
! CATGCTAATGTCTCTTCTTT+TGG - chr3.2:30485066-30485085 MS.gene51014:intron 35.0%
! TAGTGGAAAACCTTGATTTG+TGG - chr3.2:30485004-30485023 MS.gene51014:intron 35.0%
! TATAGGCGTTTTTGAATGCA+TGG - chr3.2:30482859-30482878 MS.gene51014:intron 35.0%
!! AAGCCTTCAAAGTTTTAGTG+AGG + chr3.2:30484341-30484360 None:intergenic 35.0%
!! AGCCTTCAAAGTTTTAGTGA+GGG + chr3.2:30484340-30484359 None:intergenic 35.0%
!! CCAATTAATTTTGCTGTAGG+TGG - chr3.2:30484870-30484889 MS.gene51014:CDS 35.0%
!! CTGCCAATTAATTTTGCTGT+AGG - chr3.2:30484867-30484886 MS.gene51014:CDS 35.0%
!!! GTCACTATTTTGATCCCAAA+AGG - chr3.2:30482909-30482928 MS.gene51014:intron 35.0%
!!! TCCACTATGATATTTTGGCA+TGG + chr3.2:30484991-30485010 None:intergenic 35.0%
AAAATCAGAATTTCAGCCCC+GGG - chr3.2:30484042-30484061 MS.gene51014:intron 40.0%
AAAGTTGTCCATCCTTTGCA+TGG + chr3.2:30482969-30482988 None:intergenic 40.0%
AACAACCACCCTAAAGTGAA+GGG - chr3.2:30483299-30483318 MS.gene51014:intron 40.0%
AGAAGGAGTGAAGATGGTTA+TGG + chr3.2:30482778-30482797 None:intergenic 40.0%
ATCTTCATTGGACCATGCAA+AGG - chr3.2:30482954-30482973 MS.gene51014:intron 40.0%
ATTGGATGGTCAAGGATCTT+CGG - chr3.2:30483094-30483113 MS.gene51014:intron 40.0%
CAAAATTGAAGGGACCTTGA+AGG - chr3.2:30482989-30483008 MS.gene51014:intron 40.0%
CATCATTAGGCCACAAATCA+AGG + chr3.2:30485017-30485036 None:intergenic 40.0%
GAAACAAAAAGAACAGCCAC+TGG + chr3.2:30483627-30483646 None:intergenic 40.0%
GAACTTACAATTGGAAGACG+GGG + chr3.2:30483158-30483177 None:intergenic 40.0%
GCCATGCCAAAATATCATAG+TGG - chr3.2:30484987-30485006 MS.gene51014:intron 40.0%
GGAAGTCTTGGAAAGTTTGA+TGG - chr3.2:30484228-30484247 MS.gene51014:intron 40.0%
GTAAACTATAGGCAAGATGG+AGG + chr3.2:30485102-30485121 None:intergenic 40.0%
GTCGCAAAATATGGATCAGT+TGG + chr3.2:30483017-30483036 None:intergenic 40.0%
TAACAACCACCCTAAAGTGA+AGG - chr3.2:30483298-30483317 MS.gene51014:intron 40.0%
TCCCCTCACTAAAACTTTGA+AGG - chr3.2:30484335-30484354 MS.gene51014:intron 40.0%
! ATAATCCCTTCACTTTAGGG+TGG + chr3.2:30483307-30483326 None:intergenic 40.0%
!! CTTGATTTGTGGCCTAATGA+TGG - chr3.2:30485015-30485034 MS.gene51014:intron 40.0%
!! GCCTTCAAAGTTTTAGTGAG+GGG + chr3.2:30484339-30484358 None:intergenic 40.0%
AAATCGTGGTTGCAGCACTA+AGG - chr3.2:30484434-30484453 MS.gene51014:intron 45.0%
AATTTGATCGTGAGTGGACC+TGG - chr3.2:30483068-30483087 MS.gene51014:intron 45.0%
AGATTGCAATAGTAGGGACC+TGG + chr3.2:30485186-30485205 None:intergenic 45.0%
ATTGGAAGACGGGGACAATT+AGG + chr3.2:30483149-30483168 None:intergenic 45.0%
ATTTGATCGTGAGTGGACCT+GGG - chr3.2:30483069-30483088 MS.gene51014:intron 45.0%
CATCGCGATACAATCATCAC+CGG + chr3.2:30484142-30484161 None:intergenic 45.0%
GATTGCAATAGTAGGGACCT+GGG + chr3.2:30485185-30485204 None:intergenic 45.0%
TCATTGGACCATGCAAAGGA+TGG - chr3.2:30482958-30482977 MS.gene51014:intron 45.0%
TCCAGGACCACAAAAAACGT+CGG + chr3.2:30484193-30484212 None:intergenic 45.0%
TTAGTGCTGCAACCACGATT+TGG + chr3.2:30484435-30484454 None:intergenic 45.0%
TTGGAAGACGGGGACAATTA+GGG + chr3.2:30483148-30483167 None:intergenic 45.0%
!! AAAAACGCGAACATTGGCTC+CGG - chr3.2:30484120-30484139 MS.gene51014:intron 45.0%
!!! GTTTTTTGTGGTCCTGGACA+TGG - chr3.2:30484195-30484214 MS.gene51014:intron 45.0%
!!! TGGATCTCCGACGTTTTTTG+TGG - chr3.2:30484183-30484202 MS.gene51014:intron 45.0%
AACTACGGTGCAATCGCAGA+TGG - chr3.2:30482725-30482744 MS.gene51014:intron 50.0%
ATGGTCAAGGATCTTCGGCT+TGG - chr3.2:30483099-30483118 MS.gene51014:intron 50.0%
CGGTGATGATTGTATCGCGA+TGG - chr3.2:30484140-30484159 MS.gene51014:intron 50.0%
GATTGTATCGCGATGGTCTC+TGG - chr3.2:30484147-30484166 MS.gene51014:intron 50.0%
GGTGATAGCCCAAACACAGA+TGG - chr3.2:30484063-30484082 MS.gene51014:intron 50.0%
TCTGTGTTTGGGCTATCACC+CGG + chr3.2:30484063-30484082 None:intergenic 50.0%
TGGATCAGTTGGAGCCTTCA+AGG + chr3.2:30483006-30483025 None:intergenic 50.0%
! GGAGTTAGCGTTGGAAGTCT+TGG - chr3.2:30484216-30484235 MS.gene51014:intron 50.0%
!! TCAAGGATCTTCGGCTTGGT+CGG - chr3.2:30483103-30483122 MS.gene51014:intron 50.0%
!!! TCCGACGTTTTTTGTGGTCC+TGG - chr3.2:30484189-30484208 MS.gene51014:intron 50.0%
AGTGGACCTGGGACATTGGA+TGG - chr3.2:30483080-30483099 MS.gene51014:intron 55.0%
CCAACGCTAACTCCATGTCC+AGG + chr3.2:30484210-30484229 None:intergenic 55.0%
CCTGGACATGGAGTTAGCGT+TGG - chr3.2:30484207-30484226 MS.gene51014:intron 55.0%
CCTGGGACATTGGATGGTCA+AGG - chr3.2:30483086-30483105 MS.gene51014:intron 55.0%
CCTTGACCATCCAATGTCCC+AGG + chr3.2:30483089-30483108 None:intergenic 55.0%
CTGTGTTTGGGCTATCACCC+GGG + chr3.2:30484062-30484081 None:intergenic 55.0%
TGTGTTTGGGCTATCACCCG+GGG + chr3.2:30484061-30484080 None:intergenic 55.0%
CGTGAGTGGACCTGGGACAT+TGG - chr3.2:30483076-30483095 MS.gene51014:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 30482635 30485213 30482635 ID=MS.gene51014
chr3.2 mRNA 30482635 30485213 30482635 ID=MS.gene51014.t1;Parent=MS.gene51014
chr3.2 exon 30485082 30485213 30485082 ID=MS.gene51014.t1.exon1;Parent=MS.gene51014.t1
chr3.2 CDS 30485082 30485213 30485082 ID=cds.MS.gene51014.t1;Parent=MS.gene51014.t1
chr3.2 exon 30484679 30484984 30484679 ID=MS.gene51014.t1.exon2;Parent=MS.gene51014.t1
chr3.2 CDS 30484679 30484984 30484679 ID=cds.MS.gene51014.t1;Parent=MS.gene51014.t1
chr3.2 exon 30483393 30483914 30483393 ID=MS.gene51014.t1.exon3;Parent=MS.gene51014.t1
chr3.2 CDS 30483393 30483914 30483393 ID=cds.MS.gene51014.t1;Parent=MS.gene51014.t1
chr3.2 exon 30482635 30482661 30482635 ID=MS.gene51014.t1.exon4;Parent=MS.gene51014.t1
chr3.2 CDS 30482635 30482661 30482635 ID=cds.MS.gene51014.t1;Parent=MS.gene51014.t1
Gene Sequence

>MS.gene51014

ATGGTTGGAAATTTTTCGTTTGTGTTGTTCTTACTAGTAGTTTGTATTTCAAAATCACAATCACGAGTCACAAACGTTTTTAATGTGTTAAACTACGGTGCAATCGCAGATGGAGAAACTGATAATAAAGAGGTATATAACCATAACCATCTTCACTCCTTCTCTTTTTTATTTCTTAAAATTTTGATTTAGATTACCTAACTAATTTGTTATTCTCTTGTAAATATAGGCGTTTTTGAATGCATGGAGTGATGCATGCAAATCAAATGGAAAAGTCACTATTTTGATCCCAAAAGGAACATATATGGTGAAGCAAGTAATCTTCATTGGACCATGCAAAGGATGGACAACTTTCAAAATTGAAGGGACCTTGAAGGCTCCAACTGATCCATATTTTGCGACTGATAAATGGATTAATTTTCAATACGTGAATAATTTGATCGTGAGTGGACCTGGGACATTGGATGGTCAAGGATCTTCGGCTTGGTCGGTAAATGATTGCAAAAACAACCCTAATTGTCCCCGTCTTCCAATTGTAAGTTCATCTATTAAATCATATTCCATAGATATCCTTAGAAAAAATTATATTCTACAGATCGATCAATGGATTTTAACAAAAGTACATATGTTTTTAACCAAGAGGAAATAAATTGGAATAGCGGATAACAACCACCCTAAAGTGAAGGGATTATTATTATTTTTTTTTTTTTGAAAGATAAAGTGAAGGGATTATGTTACTATTCATTAATAATAGAAAAGTAGTTTTAAATTCCTTTGTTAGGATTGGAGGAATAATTGGGAATTTAGTTTCTATACTATCGTGTCTTATGTATGTTTCAATAGTATCATGTTTAAATAGTTTTCAGCGATCACATTTTGTTATAATGTTCTAGTGATAAATTTGTCATAGCTACCATCAAATCAAAATCATGATACATACCAATATGAAAATAAATCATGAAAAAAATCATCAATAGAAGAAAAACAGTCCAGTGGCTGTTCTTTTTGTTTCCACATTTTAGTTTTTATTTCTATTTATAGCGTGTGTGTATATATATAATATATGTTAAGAGTTTTTTTTTTTTTTTGAATAAATATATTTAAGAGTTATTAGTAGTTATTTTTTTAATTGAAGCATATATTCTATGGATTGATGGAACAAATTGTAGCCAGACCAATATGATTTATCTTTTTAACGGGAGTCTACCAATATGTTAAATGTTACATTTTTTTTATTATACTAGTTATTAATTTTTGTTTAACATGATATTAATACATTGGTGTTTTTTGTTTTCTCAGTCCATGACATTTGATTTTGTCACAAATGGTACCATTCACCATTTGAGATCTTTTAATAGCAAAGGAGCACATTTTAAGTTGTTTGCTTGCGAAAACATGATTTTCACAAAAATCAGAATTTCAGCCCCGGGTGATAGCCCAAACACAGATGGAATAAAAATAGGCAAGTCAAACGGGATAACTATTAAAAACGCGAACATTGGCTCCGGTGATGATTGTATCGCGATGGTCTCTGGTACTAGAAATGTTTGGATCTCCGACGTTTTTTGTGGTCCTGGACATGGAGTTAGCGTTGGAAGTCTTGGAAAGTTTGATGGAGAAGAAGATGTTGACAACATAAATGTGAAGAACTGCACCTTTAGTGACACAACTAATGGTCTTAGAATTAAGACTTGGGCTTCTCCCCTCACTAAAACTTTGAAGGCTTCTCATATTGTGTATGAAGATATTGTGATGAATAACGTGGATAATCCCATTCTTATTGATCAAGAATATTGTCCAAATCGTGGTTGCAGCACTAAGGTTAATACTTTTAAACTACATCCTAATTTTAATATTAAATTTAAATCACTTTTTTTTTCTCACTTTATTTTTTGTTAATTTGAATTTTTAATATTCATGCAATTTGAGATGTATTTTTAGCAAATTTGATTTAGTCGGAATAATTTTTTTTTTTTGTCTGTGTAGATTTAGTCGGAATATGAGTCGTCAAATTTTCATTCAAACTATGATAAAAAAATTACCGTAGAGAGTTTGTATTTCTTTTTCTTTATTGTGTTGGATATAAGTTAAAAGGTAAAATTTTGATTTGAGGTTTACTAATATTTTTAGGATACATAATTTTGGGAGATATTTTATAAGTATTATTGATTGAAAATATAGATTAAATACTGATAATTGATATGACTTTACTTATGTACCATAATCTAATTTCTGCCAATTAATTTTGCTGTAGGTGGCATCAAACGTGCAAATAAATAGTGTGTCGTACAAAAATATCAGAGGAAGTGTGAATACTCAACTTGCAATGAACTTGAAATGCAGTGAAAAAGAGCCATGCCAAAATATCATAGTGGAAAACCTTGATTTGTGGCCTAATGATGGTAAAAGAAAACTAAACAACTGGTGTTCACATGCTAATGTCTCTTCTTTTGGAAAACAAAATCCTCCATCTTGCCTATAGTTTACTTATTTCATTGTTTTTATTTTAGTTTCAGAAACGTTGTTTATTGTGTTAAAATATTTTTTCCCAGGTCCCTACTATTGCAATCTCTCATTGA
Protein sequence

>MS.gene51014.t1

MVGNFSFVLFLLVVCISKSQSRVTNVFNVLNYGAIADGETDNKEAFLNAWSDACKSNGKVTILIPKGTYMVKQVIFIGPCKGWTTFKIEGTLKAPTDPYFATDKWINFQYVNNLIVSGPGTLDGQGSSAWSVNDCKNNPNCPRLPISMTFDFVTNGTIHHLRSFNSKGAHFKLFACENMIFTKIRISAPGDSPNTDGIKIGKSNGITIKNANIGSGDDCIAMVSGTRNVWISDVFCGPGHGVSVGSLGKFDGEEDVDNINVKNCTFSDTTNGLRIKTWASPLTKTLKASHIVYEDIVMNNVDNPILIDQEYCPNRGCSTKVPTIAISH