Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51472.t1 | XP_013458796.1 | 96.6 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 2.60E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51472.t1 | A0A072UUU4 | 96.6 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 1.9e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049382 | MS.gene51472 | 0.824867 | 6.39E-54 | -1.69E-46 |
| MS.gene049756 | MS.gene51472 | 0.808712 | 2.71E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene51472 | 0.822113 | 2.82E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene51472 | 0.818813 | 1.61E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene51472 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene51472 | 0.809269 | 2.06E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene51472 | 0.806731 | 7.14E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene51472 | 0.822749 | 2.01E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene51472 | 0.82335 | 1.45E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene51472 | 0.806275 | 8.90E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene51472 | 0.831489 | 1.62E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene51472 | 0.800526 | 1.38E-48 | -1.69E-46 |
| MS.gene051245 | MS.gene51472 | 0.826568 | 2.53E-54 | -1.69E-46 |
| MS.gene052286 | MS.gene51472 | 0.812454 | 4.20E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene51472 | 0.822387 | 2.43E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene51472 | 0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene51472 | 0.835972 | 1.23E-56 | -1.69E-46 |
| MS.gene052856 | MS.gene51472 | 0.813174 | 2.92E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene51472 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene51472 | 0.807054 | 6.09E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene51472 | 0.825223 | 5.27E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene51472 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene51472 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene51472 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene056552 | MS.gene51472 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene51472 | 0.83364 | 4.75E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene51472 | 0.848007 | 8.06E-60 | -1.69E-46 |
| MS.gene057754 | MS.gene51472 | 0.819678 | 1.02E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene51472 | 0.826212 | 3.07E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene51472 | 0.836543 | 8.80E-57 | -1.69E-46 |
| MS.gene059128 | MS.gene51472 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene51472 | 0.810081 | 1.38E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene51472 | 0.819331 | 1.23E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene51472 | 0.827357 | 1.64E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene51472 | 0.820248 | 7.58E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51472.t1 | MTR_3g006790 | 96.585 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 1.46e-145 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51472.t1 | AT5G04910 | 69.231 | 182 | 56 | 0 | 24 | 205 | 41 | 222 | 1.90e-83 | 247 |
Find 43 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAGAAGATTTGGAATT+TGG | 0.083112 | 3.4:-2252789 | MS.gene51472:CDS |
| ACGAAGCAAAACAACGATTT+TGG | 0.239125 | 3.4:+2252716 | None:intergenic |
| CGGAGTGATGGAAGAAGATT+TGG | 0.282022 | 3.4:-2252796 | None:intergenic |
| AAGGAGATCACTGAAGCTTC+TGG | 0.308239 | 3.4:-2250056 | MS.gene51472:CDS |
| CATGACTTCTGGAGGGGAAT+TGG | 0.328109 | 3.4:-2251468 | MS.gene51472:CDS |
| TGGAAGAAGATTTGGAATTT+GGG | 0.347258 | 3.4:-2252788 | MS.gene51472:CDS |
| CCTGTTCTTGAACAGCTCTA+AGG | 0.384342 | 3.4:+2251211 | None:intergenic |
| AGATCAATGCGGCTATAGTC+AGG | 0.398263 | 3.4:+2251243 | None:intergenic |
| TGACTATAGCCGCATTGATC+TGG | 0.404819 | 3.4:-2251241 | MS.gene51472:CDS |
| TTGTAAATTTGCAATTATCA+TGG | 0.426145 | 3.4:+2250108 | None:intergenic |
| CCTTAGAGCTGTTCAAGAAC+AGG | 0.429245 | 3.4:-2251211 | MS.gene51472:CDS |
| AGATTTGGAATTTGGGAAGA+AGG | 0.436083 | 3.4:-2252781 | MS.gene51472:CDS |
| AAGCTTATTCCAAACTCAAA+AGG | 0.441845 | 3.4:-2252662 | MS.gene51472:intron |
| GCATGAGTGTGTCCATGTTA+AGG | 0.447012 | 3.4:-2250075 | MS.gene51472:CDS |
| CCGCTTTCTTTAACAGCTGA+AGG | 0.459259 | 3.4:+2250156 | None:intergenic |
| ATCATGGCTTACCAGTCGTT+CGG | 0.468178 | 3.4:+2250124 | None:intergenic |
| TTGGCTTATCAGCAGCTTTG+CGG | 0.476285 | 3.4:-2251449 | MS.gene51472:CDS |
| GAAACAGTGACTCCATTTCA+CGG | 0.495876 | 3.4:+2251271 | None:intergenic |
| TGAAGCTATTAGAGGTGTCC+AGG | 0.497762 | 3.4:-2249988 | MS.gene51472:CDS |
| GCTGTCAATGAAGCTATTAG+AGG | 0.497962 | 3.4:-2249996 | MS.gene51472:CDS |
| TGGACACACTCATGCTCTGT+TGG | 0.499630 | 3.4:+2250083 | None:intergenic |
| TTTAGCATAGGTCCGTGAAA+TGG | 0.500168 | 3.4:-2251283 | MS.gene51472:intron |
| AGGAGATCACTGAAGCTTCT+GGG | 0.504065 | 3.4:-2250055 | MS.gene51472:CDS |
| GGAAAAGCAGAAACTGCATC+TGG | 0.521529 | 3.4:-2251190 | MS.gene51472:intron |
| TGATGACCATGACAGCATCC+TGG | 0.539396 | 3.4:+2249970 | None:intergenic |
| GGGTCGGCCATCCGAACGAC+TGG | 0.546391 | 3.4:-2250135 | MS.gene51472:CDS |
| AGGTGTCCAGGATGCTGTCA+TGG | 0.560024 | 3.4:-2249976 | MS.gene51472:CDS |
| CTTCAGCTGTTAAAGAAAGC+GGG | 0.562359 | 3.4:-2250155 | MS.gene51472:CDS |
| CTTCAGTGATCTCCTTAACA+TGG | 0.563538 | 3.4:+2250063 | None:intergenic |
| GCTTATCAGCAGCTTTGCGG+TGG | 0.567237 | 3.4:-2251446 | MS.gene51472:CDS |
| CCTTCAGCTGTTAAAGAAAG+CGG | 0.588320 | 3.4:-2250156 | MS.gene51472:CDS |
| TGGGACTGAAGAAGCAGAAG+CGG | 0.588338 | 3.4:-2250036 | MS.gene51472:CDS |
| CGCTTTCTTTAACAGCTGAA+GGG | 0.591750 | 3.4:+2250157 | None:intergenic |
| TTCGATAAACGACGACACAA+TGG | 0.594243 | 3.4:-2252757 | MS.gene51472:CDS |
| CTGACTACATGACTTCTGGA+GGG | 0.596770 | 3.4:-2251475 | MS.gene51472:CDS |
| ATTGACAGCATTATCATACT+CGG | 0.598016 | 3.4:+2250010 | None:intergenic |
| TCTGACTACATGACTTCTGG+AGG | 0.598390 | 3.4:-2251476 | MS.gene51472:CDS |
| TGGCTTACCAGTCGTTCGGA+TGG | 0.598843 | 3.4:+2250128 | None:intergenic |
| TGACTACATGACTTCTGGAG+GGG | 0.607829 | 3.4:-2251474 | MS.gene51472:CDS |
| GATCAATGCGGCTATAGTCA+GGG | 0.641012 | 3.4:+2251244 | None:intergenic |
| GATAAACGACGACACAATGG+AGG | 0.651584 | 3.4:-2252754 | MS.gene51472:CDS |
| AGCTGTTAAAGAAAGCGGGT+CGG | 0.673250 | 3.4:-2250151 | MS.gene51472:CDS |
| GGATTTGTGCCAGATCAATG+CGG | 0.740512 | 3.4:+2251232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAAATTATGAAC+TGG | - | chr3.4:2252136-2252155 | MS.gene51472:intron | 15.0% |
| !! | TTCTATTATGAAAATTCATA+CGG | - | chr3.4:2251111-2251130 | MS.gene51472:intron | 15.0% |
| !!! | TCGTTTTCTTTTAATATAAA+AGG | - | chr3.4:2251341-2251360 | MS.gene51472:intron | 15.0% |
| !!! | TTAAATTTCTAGATTTAAGT+TGG | - | chr3.4:2251005-2251024 | MS.gene51472:intron | 15.0% |
| !!! | TTGATTTAACTTAAAAAAGA+AGG | + | chr3.4:2252026-2252045 | None:intergenic | 15.0% |
| !! | TAAAAGAAAACGATAATGTT+AGG | + | chr3.4:2251334-2251353 | None:intergenic | 20.0% |
| !! | TATAGTTGATTAAATTGAAC+AGG | + | chr3.4:2251836-2251855 | None:intergenic | 20.0% |
| !! | TTGTAAATTTGCAATTATCA+TGG | + | chr3.4:2252601-2252620 | None:intergenic | 20.0% |
| !!! | TCTTTTTATATCTTCTATCT+GGG | - | chr3.4:2251649-2251668 | MS.gene51472:intron | 20.0% |
| !!! | TTATCTGTGCAAAAATTTTA+AGG | + | chr3.4:2252388-2252407 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATATCTTCTATC+TGG | - | chr3.4:2251648-2251667 | MS.gene51472:intron | 20.0% |
| ! | AATACAAAACACTTGAATTG+AGG | + | chr3.4:2252496-2252515 | None:intergenic | 25.0% |
| ! | AATTAAATATACCGTAACAC+CGG | + | chr3.4:2250751-2250770 | None:intergenic | 25.0% |
| ! | AATTGAAGATGAAAATGACT+TGG | - | chr3.4:2250200-2250219 | MS.gene51472:intron | 25.0% |
| ! | ACAAACTTCATTTGTTTGTA+CGG | - | chr3.4:2251575-2251594 | MS.gene51472:intron | 25.0% |
| ! | ATAACCTATGTTTAGTATCA+CGG | + | chr3.4:2250505-2250524 | None:intergenic | 25.0% |
| ! | CAATGTCATTATGAAACATT+TGG | + | chr3.4:2251185-2251204 | None:intergenic | 25.0% |
| ! | CCTTAATCTTGATATAAACA+AGG | + | chr3.4:2252067-2252086 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTTCAATCTTA+GGG | - | chr3.4:2251066-2251085 | MS.gene51472:intron | 25.0% |
| ! | GTTTAATGATTGCTCAAAAA+AGG | - | chr3.4:2251295-2251314 | MS.gene51472:intron | 25.0% |
| ! | TGTAAGTTAACTTCAATCTT+AGG | - | chr3.4:2251065-2251084 | MS.gene51472:intron | 25.0% |
| !! | ATATTGACTGTGTAAAAGTA+CGG | + | chr3.4:2250349-2250368 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAATCACTTGAA+CGG | - | chr3.4:2252305-2252324 | MS.gene51472:intron | 25.0% |
| !! | CCTTGTTTATATCAAGATTA+AGG | - | chr3.4:2252064-2252083 | MS.gene51472:intron | 25.0% |
| !! | TATCTTTTCTGATTTAGCAT+AGG | - | chr3.4:2251411-2251430 | MS.gene51472:intron | 25.0% |
| !! | TGATGTTTTATGTGCATTAT+TGG | - | chr3.4:2251715-2251734 | MS.gene51472:intron | 25.0% |
| !!! | AATTTCTAGATTTAAGTTGG+TGG | - | chr3.4:2251008-2251027 | MS.gene51472:intron | 25.0% |
| !!! | ATTCTGCTTACTTTTAATTG+TGG | - | chr3.4:2252432-2252451 | MS.gene51472:intron | 25.0% |
| !!! | CTTCAATTATTTTTTGCCAT+AGG | + | chr3.4:2250188-2250207 | None:intergenic | 25.0% |
| !!! | TAAGTTGGTGGTTTTTTAAA+AGG | - | chr3.4:2251020-2251039 | MS.gene51472:intron | 25.0% |
| !!! | TTTTTTTTCTTTCCGAAAAC+AGG | + | chr3.4:2252128-2252147 | None:intergenic | 25.0% |
| AAGAAATGTCCTTAAACTAG+GGG | + | chr3.4:2251546-2251565 | None:intergenic | 30.0% | |
| AAGAATAGCCGAAGATTTAA+TGG | + | chr3.4:2251764-2251783 | None:intergenic | 30.0% | |
| AAGCTTATTCCAAACTCAAA+AGG | - | chr3.4:2250044-2250063 | MS.gene51472:CDS | 30.0% | |
| AAGTAAGCAGAATAACTAAC+TGG | + | chr3.4:2252425-2252444 | None:intergenic | 30.0% | |
| ACTGTTGACAACATTGATAT+AGG | + | chr3.4:2250529-2250548 | None:intergenic | 30.0% | |
| ACTTAAACTATGTGTGTGTT+TGG | - | chr3.4:2250370-2250389 | MS.gene51472:intron | 30.0% | |
| AGAAGAAATGTCCTTAAACT+AGG | + | chr3.4:2251548-2251567 | None:intergenic | 30.0% | |
| ATTGACAGCATTATCATACT+CGG | + | chr3.4:2252699-2252718 | None:intergenic | 30.0% | |
| ATTTGACTAAACATTCCAAC+AGG | + | chr3.4:2251887-2251906 | None:intergenic | 30.0% | |
| CATTCATACAGAATGATCAT+AGG | + | chr3.4:2251611-2251630 | None:intergenic | 30.0% | |
| CTCTTTGACCATTAAATCTT+CGG | - | chr3.4:2251753-2251772 | MS.gene51472:intron | 30.0% | |
| GAAGAAATGTCCTTAAACTA+GGG | + | chr3.4:2251547-2251566 | None:intergenic | 30.0% | |
| TAATACAAAAACTTCAGTCC+TGG | - | chr3.4:2252193-2252212 | MS.gene51472:intron | 30.0% | |
| TAATGTGTTAAGTCTGATCA+AGG | + | chr3.4:2252239-2252258 | None:intergenic | 30.0% | |
| TATATCAATGTTGTCAACAG+TGG | - | chr3.4:2250528-2250547 | MS.gene51472:intron | 30.0% | |
| TCAAAATTCCAAAAACATGC+TGG | + | chr3.4:2250824-2250843 | None:intergenic | 30.0% | |
| TGACATTGAAATTTGACACT+TGG | - | chr3.4:2251197-2251216 | MS.gene51472:CDS | 30.0% | |
| TTGAACAAACATGGAATCAA+AGG | + | chr3.4:2251940-2251959 | None:intergenic | 30.0% | |
| TTGCACAGATAACATGAAAA+TGG | - | chr3.4:2252396-2252415 | MS.gene51472:intron | 30.0% | |
| ! | ATCTTTTGATCTGTAACCTA+TGG | - | chr3.4:2250169-2250188 | MS.gene51472:intron | 30.0% |
| ! | ATGGAAGAAGATTTGGAATT+TGG | - | chr3.4:2249917-2249936 | MS.gene51472:CDS | 30.0% |
| ! | TGAATTTTTGTGCAATTTCG+CGG | + | chr3.4:2250091-2250110 | None:intergenic | 30.0% |
| ! | TGGAAGAAGATTTGGAATTT+GGG | - | chr3.4:2249918-2249937 | MS.gene51472:CDS | 30.0% |
| !! | AAGCTAAAAAGTGTAGCTTT+TGG | - | chr3.4:2250442-2250461 | MS.gene51472:intron | 30.0% |
| !! | ACTGTTTTTCTTAGTGTGAT+CGG | + | chr3.4:2252281-2252300 | None:intergenic | 30.0% |
| AATCAAAGGAACATCCTTGA+GGG | + | chr3.4:2251926-2251945 | None:intergenic | 35.0% | |
| ACATAGTAACTTGATCCTGT+TGG | - | chr3.4:2251869-2251888 | MS.gene51472:intron | 35.0% | |
| CATGTTTGTTCAACCTGTTA+AGG | - | chr3.4:2251947-2251966 | MS.gene51472:intron | 35.0% | |
| GCATTATTGGTATATCGAGT+GGG | - | chr3.4:2251728-2251747 | MS.gene51472:intron | 35.0% | |
| GCTACATTTAGATATTCACC+AGG | + | chr3.4:2252004-2252023 | None:intergenic | 35.0% | |
| GTTAAAACATTAGCTCAACC+TGG | - | chr3.4:2251983-2252002 | MS.gene51472:intron | 35.0% | |
| TAGCTTCTGTAAAATCACCA+TGG | + | chr3.4:2250428-2250447 | None:intergenic | 35.0% | |
| TAGTACCACATCTCAGAATT+AGG | + | chr3.4:2250847-2250866 | None:intergenic | 35.0% | |
| TATGTGTGTGTTTGGTATCA+CGG | - | chr3.4:2250378-2250397 | MS.gene51472:intron | 35.0% | |
| TGCATTATTGGTATATCGAG+TGG | - | chr3.4:2251727-2251746 | MS.gene51472:intron | 35.0% | |
| ! | AAGCAAAACAACGATTTTGG+TGG | + | chr3.4:2249990-2250009 | None:intergenic | 35.0% |
| ! | AAGTTTTCAGATTTTGCACC+AGG | + | chr3.4:2252214-2252233 | None:intergenic | 35.0% |
| ! | ACGAAGCAAAACAACGATTT+TGG | + | chr3.4:2249993-2250012 | None:intergenic | 35.0% |
| ! | AGATTTGGAATTTGGGAAGA+AGG | - | chr3.4:2249925-2249944 | MS.gene51472:CDS | 35.0% |
| ! | CTTAACAGGTTGAACAAACA+TGG | + | chr3.4:2251949-2251968 | None:intergenic | 35.0% |
| ! | TACCTCAAATCACCTGTTTT+CGG | - | chr3.4:2252113-2252132 | MS.gene51472:intron | 35.0% |
| ! | TTTTCTGACTACATGACTTC+TGG | - | chr3.4:2251227-2251246 | MS.gene51472:CDS | 35.0% |
| !! | AGCTTTTGGAAAATCACGAT+AGG | - | chr3.4:2250456-2250475 | MS.gene51472:intron | 35.0% |
| !! | TTTGACCTAATTCTGAGATG+TGG | - | chr3.4:2250839-2250858 | MS.gene51472:intron | 35.0% |
| !!! | AGTAACGAACCTTTTGAGTT+TGG | + | chr3.4:2250056-2250075 | None:intergenic | 35.0% |
| AAACTACCCTAATCCAACCA+AGG | + | chr3.4:2252169-2252188 | None:intergenic | 40.0% | |
| AACTACCCTAATCCAACCAA+GGG | + | chr3.4:2252168-2252187 | None:intergenic | 40.0% | |
| AATTCATACGGCGTAGCAAT+AGG | - | chr3.4:2251123-2251142 | MS.gene51472:intron | 40.0% | |
| ATAACACCCTTGGTTGGATT+AGG | - | chr3.4:2252159-2252178 | MS.gene51472:intron | 40.0% | |
| ATAACAGTCATCTTGCTCTC+TGG | + | chr3.4:2250235-2250254 | None:intergenic | 40.0% | |
| ATTCATACGGCGTAGCAATA+GGG | - | chr3.4:2251124-2251143 | MS.gene51472:intron | 40.0% | |
| ATTGAAGTTTCGTACCCTCA+AGG | - | chr3.4:2251909-2251928 | MS.gene51472:intron | 40.0% | |
| CAAACAAAGAGAGCCTTAAC+AGG | + | chr3.4:2251963-2251982 | None:intergenic | 40.0% | |
| CCTTCAGCTGTTAAAGAAAG+CGG | - | chr3.4:2252550-2252569 | MS.gene51472:intron | 40.0% | |
| CGCTTTCTTTAACAGCTGAA+GGG | + | chr3.4:2252552-2252571 | None:intergenic | 40.0% | |
| CTGTTAAGGCTCTCTTTGTT+TGG | - | chr3.4:2251961-2251980 | MS.gene51472:intron | 40.0% | |
| CTTCAGCTGTTAAAGAAAGC+GGG | - | chr3.4:2252551-2252570 | MS.gene51472:intron | 40.0% | |
| CTTCAGTGATCTCCTTAACA+TGG | + | chr3.4:2252646-2252665 | None:intergenic | 40.0% | |
| GAAACAGTGACTCCATTTCA+CGG | + | chr3.4:2251438-2251457 | None:intergenic | 40.0% | |
| GAATCAAAGGAACATCCTTG+AGG | + | chr3.4:2251927-2251946 | None:intergenic | 40.0% | |
| GAGGTAGCATGTCATATAGA+AGG | + | chr3.4:2252099-2252118 | None:intergenic | 40.0% | |
| GCTGTCAATGAAGCTATTAG+AGG | - | chr3.4:2252710-2252729 | MS.gene51472:CDS | 40.0% | |
| TAACACCCTTGGTTGGATTA+GGG | - | chr3.4:2252160-2252179 | MS.gene51472:intron | 40.0% | |
| TAACAGAGTAAATCTGCCCT+TGG | + | chr3.4:2250922-2250941 | None:intergenic | 40.0% | |
| TAACAGTCATCTTGCTCTCT+GGG | + | chr3.4:2250234-2250253 | None:intergenic | 40.0% | |
| TATGAACTGGATAACACCCT+TGG | - | chr3.4:2252149-2252168 | MS.gene51472:intron | 40.0% | |
| TGAAATTTGACACTTGGCAG+TGG | - | chr3.4:2251203-2251222 | MS.gene51472:CDS | 40.0% | |
| TTCCGAAAACAGGTGATTTG+AGG | + | chr3.4:2252118-2252137 | None:intergenic | 40.0% | |
| TTCGATAAACGACGACACAA+TGG | - | chr3.4:2249949-2249968 | MS.gene51472:CDS | 40.0% | |
| TTTAGCATAGGTCCGTGAAA+TGG | - | chr3.4:2251423-2251442 | MS.gene51472:CDS | 40.0% | |
| ! | AATATACCGTAACACCGGTT+AGG | + | chr3.4:2250746-2250765 | None:intergenic | 40.0% |
| ! | ACTGTGTAAAAGTACGGTGT+AGG | + | chr3.4:2250343-2250362 | None:intergenic | 40.0% |
| ! | GAATCTTGCCAGCATGTTTT+TGG | - | chr3.4:2250813-2250832 | MS.gene51472:intron | 40.0% |
| !! | ATTCTGAGATGTGGTACTAC+AGG | - | chr3.4:2250848-2250867 | MS.gene51472:intron | 40.0% |
| AAAGTACGGTGTAGGTAGCT+CGG | + | chr3.4:2250335-2250354 | None:intergenic | 45.0% | |
| AACTGGATAACACCCTTGGT+TGG | - | chr3.4:2252153-2252172 | MS.gene51472:intron | 45.0% | |
| AAGGAGATCACTGAAGCTTC+TGG | - | chr3.4:2252650-2252669 | MS.gene51472:intron | 45.0% | |
| ACATTAAACGAGGAGGTCTC+GGG | + | chr3.4:2250297-2250316 | None:intergenic | 45.0% | |
| ACCATGGATCGTCATGATTC+TGG | + | chr3.4:2250412-2250431 | None:intergenic | 45.0% | |
| AGATCAATGCGGCTATAGTC+AGG | + | chr3.4:2251466-2251485 | None:intergenic | 45.0% | |
| AGCTGTTAAAGAAAGCGGGT+CGG | - | chr3.4:2252555-2252574 | MS.gene51472:intron | 45.0% | |
| AGGAGATCACTGAAGCTTCT+GGG | - | chr3.4:2252651-2252670 | MS.gene51472:intron | 45.0% | |
| ATCATGGCTTACCAGTCGTT+CGG | + | chr3.4:2252585-2252604 | None:intergenic | 45.0% | |
| CCGCTTTCTTTAACAGCTGA+AGG | + | chr3.4:2252553-2252572 | None:intergenic | 45.0% | |
| CCTGTTCTTGAACAGCTCTA+AGG | + | chr3.4:2251498-2251517 | None:intergenic | 45.0% | |
| CCTTAGAGCTGTTCAAGAAC+AGG | - | chr3.4:2251495-2251514 | MS.gene51472:intron | 45.0% | |
| CTAAGCGACATTAAACGAGG+AGG | + | chr3.4:2250304-2250323 | None:intergenic | 45.0% | |
| CTCGCCGTGATACTAAACAT+AGG | - | chr3.4:2250498-2250517 | MS.gene51472:intron | 45.0% | |
| CTGACTACATGACTTCTGGA+GGG | - | chr3.4:2251231-2251250 | MS.gene51472:CDS | 45.0% | |
| CTGGCAAGATTCACACGTTT+GGG | + | chr3.4:2250805-2250824 | None:intergenic | 45.0% | |
| GACATTAAACGAGGAGGTCT+CGG | + | chr3.4:2250298-2250317 | None:intergenic | 45.0% | |
| GAGCTAAGCGACATTAAACG+AGG | + | chr3.4:2250307-2250326 | None:intergenic | 45.0% | |
| GATAAACGACGACACAATGG+AGG | - | chr3.4:2249952-2249971 | MS.gene51472:CDS | 45.0% | |
| GATCAATGCGGCTATAGTCA+GGG | + | chr3.4:2251465-2251484 | None:intergenic | 45.0% | |
| GCATGAGTGTGTCCATGTTA+AGG | - | chr3.4:2252631-2252650 | MS.gene51472:intron | 45.0% | |
| GGAAAAGCAGAAACTGCATC+TGG | - | chr3.4:2251516-2251535 | MS.gene51472:intron | 45.0% | |
| GGATTTGTGCCAGATCAATG+CGG | + | chr3.4:2251477-2251496 | None:intergenic | 45.0% | |
| GGCAGAACCATCTAGTATAG+CGG | + | chr3.4:2250880-2250899 | None:intergenic | 45.0% | |
| TCTGACTACATGACTTCTGG+AGG | - | chr3.4:2251230-2251249 | MS.gene51472:CDS | 45.0% | |
| TCTGGTAAGCCCCTAGTTTA+AGG | - | chr3.4:2251534-2251553 | MS.gene51472:intron | 45.0% | |
| TTGGCTTATCAGCAGCTTTG+CGG | - | chr3.4:2251257-2251276 | MS.gene51472:CDS | 45.0% | |
| ! | CACGTTTGGGCTTTTCAGTT+CGG | + | chr3.4:2250792-2250811 | None:intergenic | 45.0% |
| ! | TGACTACATGACTTCTGGAG+GGG | - | chr3.4:2251232-2251251 | MS.gene51472:CDS | 45.0% |
| ! | TGACTATAGCCGCATTGATC+TGG | - | chr3.4:2251465-2251484 | MS.gene51472:CDS | 45.0% |
| ! | TTTGTACTGAAAGCGTGTCG+CGG | - | chr3.4:2250577-2250596 | MS.gene51472:intron | 45.0% |
| !! | TGAAGCTATTAGAGGTGTCC+AGG | - | chr3.4:2252718-2252737 | MS.gene51472:CDS | 45.0% |
| !!! | GCTTTTCAGTTCGGTGTTTC+AGG | + | chr3.4:2250783-2250802 | None:intergenic | 45.0% |
| CAAGTGACGTTGCTTGCAGT+TGG | - | chr3.4:2252358-2252377 | MS.gene51472:intron | 50.0% | |
| GCATCAGCCGCTATACTAGA+TGG | - | chr3.4:2250870-2250889 | MS.gene51472:intron | 50.0% | |
| GCCAGAATCATGACGATCCA+TGG | - | chr3.4:2250408-2250427 | MS.gene51472:intron | 50.0% | |
| GCTGGCAAGATTCACACGTT+TGG | + | chr3.4:2250806-2250825 | None:intergenic | 50.0% | |
| GGAGGTCTCGGGTTTATCTT+CGG | + | chr3.4:2250286-2250305 | None:intergenic | 50.0% | |
| GGTGTCTACATGGCACACAA+TGG | + | chr3.4:2250901-2250920 | None:intergenic | 50.0% | |
| GTGTGCCATGTAGACACCAA+GGG | - | chr3.4:2250903-2250922 | MS.gene51472:intron | 50.0% | |
| TGATGACCATGACAGCATCC+TGG | + | chr3.4:2252739-2252758 | None:intergenic | 50.0% | |
| TGGACACACTCATGCTCTGT+TGG | + | chr3.4:2252626-2252645 | None:intergenic | 50.0% | |
| TGGGACTGAAGAAGCAGAAG+CGG | - | chr3.4:2252670-2252689 | MS.gene51472:CDS | 50.0% | |
| TGTGTGCCATGTAGACACCA+AGG | - | chr3.4:2250902-2250921 | MS.gene51472:intron | 50.0% | |
| ! | CATGACTTCTGGAGGGGAAT+TGG | - | chr3.4:2251238-2251257 | MS.gene51472:CDS | 50.0% |
| ! | GAGAAGCCTAACCGGTGTTA+CGG | - | chr3.4:2250737-2250756 | MS.gene51472:intron | 50.0% |
| !! | ATCTGCCCTTGGTGTCTACA+TGG | + | chr3.4:2250911-2250930 | None:intergenic | 50.0% |
| AGGTGTCCAGGATGCTGTCA+TGG | - | chr3.4:2252730-2252749 | MS.gene51472:CDS | 55.0% | |
| CGGCGTAGCAATAGGGCTAT+TGG | - | chr3.4:2251131-2251150 | MS.gene51472:intron | 55.0% | |
| GACAGCGAGAGAAGCCTAAC+CGG | - | chr3.4:2250729-2250748 | MS.gene51472:intron | 55.0% | |
| GCTTATCAGCAGCTTTGCGG+TGG | - | chr3.4:2251260-2251279 | MS.gene51472:CDS | 55.0% | |
| TACGGTGTAGGTAGCTCGGT+TGG | + | chr3.4:2250331-2250350 | None:intergenic | 55.0% | |
| TGGCTTACCAGTCGTTCGGA+TGG | + | chr3.4:2252581-2252600 | None:intergenic | 55.0% | |
| GGGTCGGCCATCCGAACGAC+TGG | - | chr3.4:2252571-2252590 | MS.gene51472:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 2249917 | 2252811 | 2249917 | ID=MS.gene51472 |
| chr3.4 | mRNA | 2249917 | 2252811 | 2249917 | ID=MS.gene51472.t1;Parent=MS.gene51472 |
| chr3.4 | exon | 2252663 | 2252811 | 2252663 | ID=MS.gene51472.t1.exon1;Parent=MS.gene51472.t1 |
| chr3.4 | CDS | 2252663 | 2252811 | 2252663 | ID=cds.MS.gene51472.t1;Parent=MS.gene51472.t1 |
| chr3.4 | exon | 2251412 | 2251505 | 2251412 | ID=MS.gene51472.t1.exon2;Parent=MS.gene51472.t1 |
| chr3.4 | CDS | 2251412 | 2251505 | 2251412 | ID=cds.MS.gene51472.t1;Parent=MS.gene51472.t1 |
| chr3.4 | exon | 2251191 | 2251295 | 2251191 | ID=MS.gene51472.t1.exon3;Parent=MS.gene51472.t1 |
| chr3.4 | CDS | 2251191 | 2251295 | 2251191 | ID=cds.MS.gene51472.t1;Parent=MS.gene51472.t1 |
| chr3.4 | exon | 2249917 | 2250186 | 2249917 | ID=MS.gene51472.t1.exon4;Parent=MS.gene51472.t1 |
| chr3.4 | CDS | 2249917 | 2250186 | 2249917 | ID=cds.MS.gene51472.t1;Parent=MS.gene51472.t1 |
| Gene Sequence |
| Protein sequence |
