Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46442.t1 | XP_003590329.1 | 94.8 | 267 | 12 | 1 | 1 | 267 | 27 | 291 | 3.00E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46442.t1 | Q9ZSD4 | 72.9 | 262 | 71 | 0 | 4 | 265 | 27 | 288 | 1.9e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46442.t1 | G7I8J4 | 94.8 | 267 | 12 | 1 | 1 | 267 | 27 | 291 | 2.2e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene46442 | 0.825804 | 3.84E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene46442 | 0.802244 | 6.15E-49 | -1.69E-46 |
| MS.gene04998 | MS.gene46442 | 0.876921 | 9.51E-69 | -1.69E-46 |
| MS.gene050359 | MS.gene46442 | 0.823462 | 1.37E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene46442 | 0.837633 | 4.63E-57 | -1.69E-46 |
| MS.gene050646 | MS.gene46442 | 0.807868 | 4.10E-50 | -1.69E-46 |
| MS.gene051043 | MS.gene46442 | 0.833232 | 6.00E-56 | -1.69E-46 |
| MS.gene051184 | MS.gene46442 | 0.844275 | 8.36E-59 | -1.69E-46 |
| MS.gene051226 | MS.gene46442 | 0.858202 | 9.69E-63 | -1.69E-46 |
| MS.gene051699 | MS.gene46442 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene46442 | 0.83626 | 1.04E-56 | -1.69E-46 |
| MS.gene052242 | MS.gene46442 | -0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene46442 | 0.857504 | 1.56E-62 | -1.69E-46 |
| MS.gene052493 | MS.gene46442 | 0.810119 | 1.35E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene46442 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene46442 | -0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene46442 | 0.812144 | 4.91E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene46442 | 0.844938 | 5.55E-59 | -1.69E-46 |
| MS.gene053575 | MS.gene46442 | 0.803103 | 4.09E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene46442 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene46442 | 0.856597 | 2.89E-62 | -1.69E-46 |
| MS.gene053963 | MS.gene46442 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene054222 | MS.gene46442 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene46442 | 0.88462 | 1.64E-71 | -1.69E-46 |
| MS.gene054893 | MS.gene46442 | 0.892822 | 1.11E-74 | -1.69E-46 |
| MS.gene055226 | MS.gene46442 | 0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene46442 | 0.804596 | 2.00E-49 | -1.69E-46 |
| MS.gene057093 | MS.gene46442 | 0.81567 | 8.21E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene46442 | 0.818672 | 1.73E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene46442 | 0.850262 | 1.90E-60 | -1.69E-46 |
| MS.gene057999 | MS.gene46442 | 0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene46442 | 0.823472 | 1.36E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene46442 | 0.825196 | 5.35E-54 | -1.69E-46 |
| MS.gene058592 | MS.gene46442 | 0.807354 | 5.27E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene46442 | 0.816015 | 6.88E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene46442 | 0.803058 | 4.18E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene46442 | 0.840516 | 8.30E-58 | -1.69E-46 |
| MS.gene06023 | MS.gene46442 | 0.850804 | 1.34E-60 | -1.69E-46 |
| MS.gene060259 | MS.gene46442 | 0.876064 | 1.88E-68 | -1.69E-46 |
| MS.gene060412 | MS.gene46442 | 0.8188 | 1.62E-52 | -1.69E-46 |
| MS.gene060413 | MS.gene46442 | 0.835651 | 1.48E-56 | -1.69E-46 |
| MS.gene060932 | MS.gene46442 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene060964 | MS.gene46442 | 0.810038 | 1.41E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene46442 | 0.811255 | 7.67E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene46442 | 0.801699 | 7.96E-49 | -1.69E-46 |
| MS.gene06123 | MS.gene46442 | 0.806935 | 6.46E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46442 | MS.gene55383 | PPI |
| MS.gene46442 | MS.gene99692 | PPI |
| MS.gene53170 | MS.gene46442 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46442.t1 | MTR_1g056560 | 96.825 | 315 | 8 | 1 | 1 | 315 | 27 | 339 | 0.0 | 627 |
| MS.gene46442.t1 | MTR_1g056550 | 70.445 | 247 | 73 | 0 | 19 | 265 | 39 | 285 | 3.19e-131 | 375 |
| MS.gene46442.t1 | MTR_2g012270 | 61.852 | 270 | 100 | 1 | 19 | 285 | 31 | 300 | 8.39e-125 | 359 |
| MS.gene46442.t1 | MTR_4g090900 | 64.314 | 255 | 89 | 1 | 15 | 267 | 26 | 280 | 4.07e-122 | 352 |
| MS.gene46442.t1 | MTR_7g106420 | 62.348 | 247 | 93 | 0 | 21 | 267 | 28 | 274 | 2.07e-113 | 330 |
| MS.gene46442.t1 | MTR_5g012010 | 48.583 | 247 | 126 | 1 | 20 | 265 | 50 | 296 | 5.38e-84 | 256 |
| MS.gene46442.t1 | MTR_2g088700 | 44.610 | 269 | 149 | 0 | 19 | 287 | 37 | 305 | 3.40e-79 | 243 |
| MS.gene46442.t1 | MTR_6g028140 | 47.778 | 270 | 141 | 0 | 17 | 286 | 30 | 299 | 4.98e-79 | 243 |
| MS.gene46442.t1 | MTR_2g088700 | 46.468 | 269 | 144 | 0 | 19 | 287 | 37 | 305 | 4.25e-74 | 230 |
| MS.gene46442.t1 | MTR_5g020670 | 41.129 | 248 | 136 | 2 | 20 | 266 | 40 | 278 | 2.32e-60 | 195 |
| MS.gene46442.t1 | MTR_8g073900 | 34.109 | 129 | 63 | 1 | 20 | 148 | 40 | 146 | 9.23e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46442.t1 | AT3G11820 | 69.836 | 305 | 83 | 2 | 13 | 309 | 5 | 308 | 2.23e-144 | 409 |
| MS.gene46442.t1 | AT3G11820 | 68.354 | 316 | 89 | 3 | 4 | 309 | 25 | 339 | 3.61e-144 | 410 |
| MS.gene46442.t1 | AT1G61290 | 62.595 | 262 | 98 | 0 | 19 | 280 | 31 | 292 | 4.13e-125 | 360 |
| MS.gene46442.t1 | AT1G61290 | 62.595 | 262 | 98 | 0 | 19 | 280 | 31 | 292 | 4.13e-125 | 360 |
| MS.gene46442.t1 | AT1G11250 | 65.863 | 249 | 85 | 0 | 19 | 267 | 26 | 274 | 2.31e-123 | 355 |
| MS.gene46442.t1 | AT3G52400 | 64.875 | 279 | 98 | 0 | 11 | 289 | 33 | 311 | 2.17e-118 | 344 |
| MS.gene46442.t1 | AT4G03330 | 63.415 | 246 | 90 | 0 | 20 | 265 | 35 | 280 | 2.22e-113 | 330 |
| MS.gene46442.t1 | AT3G03800 | 47.273 | 275 | 145 | 0 | 12 | 286 | 26 | 300 | 3.30e-79 | 243 |
| MS.gene46442.t1 | AT3G03800 | 47.273 | 275 | 145 | 0 | 12 | 286 | 26 | 300 | 3.30e-79 | 243 |
| MS.gene46442.t1 | AT1G08560 | 46.964 | 247 | 126 | 2 | 20 | 265 | 44 | 286 | 2.87e-76 | 236 |
| MS.gene46442.t1 | AT5G08080 | 48.014 | 277 | 144 | 0 | 12 | 288 | 25 | 301 | 5.92e-70 | 219 |
| MS.gene46442.t1 | AT5G08080 | 48.014 | 277 | 144 | 0 | 12 | 288 | 25 | 301 | 5.92e-70 | 219 |
| MS.gene46442.t1 | AT5G08080 | 46.181 | 288 | 144 | 2 | 12 | 288 | 25 | 312 | 8.93e-68 | 214 |
| MS.gene46442.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 20 | 283 | 46 | 302 | 7.78e-61 | 196 |
| MS.gene46442.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 20 | 283 | 46 | 302 | 7.78e-61 | 196 |
| MS.gene46442.t1 | AT5G08080 | 43.750 | 176 | 99 | 0 | 12 | 187 | 25 | 200 | 8.04e-33 | 121 |
| MS.gene46442.t1 | AT5G08080 | 43.750 | 176 | 99 | 0 | 12 | 187 | 25 | 200 | 8.04e-33 | 121 |
Find 96 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTGAATTTCATTGA+TGG | 0.265261 | 1.2:+44510704 | None:intergenic |
| AGTTTCTGTGGCGTTGAAAA+AGG | 0.271121 | 1.2:-44512239 | MS.gene46442:CDS |
| TAATGCAGCGAACCGGAATT+TGG | 0.272373 | 1.2:-44512176 | MS.gene46442:CDS |
| TCCTGCTCCGGCTCCAGTTC+TGG | 0.274280 | 1.2:+44512426 | None:intergenic |
| ACAAGGCAGGGGAAGAATTC+TGG | 0.274465 | 1.2:-44510730 | MS.gene46442:CDS |
| TCCATTTCCTTGTGTTTCTC+TGG | 0.322362 | 1.2:+44510505 | None:intergenic |
| TTTAGCATCGTGAACCGTTT+TGG | 0.332874 | 1.2:+44512297 | None:intergenic |
| GTCCACATCCTTCCAAATTC+CGG | 0.344060 | 1.2:+44512164 | None:intergenic |
| TAGAAGTATAATACAATAAC+AGG | 0.363828 | 1.2:+44510482 | None:intergenic |
| TTGAATTGCTTTCTGAAGAA+AGG | 0.380131 | 1.2:+44510755 | None:intergenic |
| GCCGGTGCCGGAGCCAGAAC+TGG | 0.389464 | 1.2:-44512439 | MS.gene46442:CDS |
| CCGAAGGAGGAGGAGGTGAC+GGG | 0.390700 | 1.2:+44510358 | None:intergenic |
| GAAGAAGTTGAAGGATTCAA+TGG | 0.401659 | 1.2:-44512092 | MS.gene46442:CDS |
| GCCAGAACTGGAGCCGGAGC+AGG | 0.408822 | 1.2:-44512427 | MS.gene46442:CDS |
| ACAGTTTCAAGGTGAGCAAT+TGG | 0.421621 | 1.2:-44510607 | MS.gene46442:CDS |
| CCCGTCACCTCCTCCTCCTT+CGG | 0.423606 | 1.2:-44510358 | MS.gene46442:CDS |
| CGAAGGAGGAGGAGGTGACG+GGG | 0.440472 | 1.2:+44510359 | None:intergenic |
| GCCGAAGGAGGAGGAGGTGA+CGG | 0.441926 | 1.2:+44510357 | None:intergenic |
| ACGAGGAGTTCGGTGGTGAA+TGG | 0.443962 | 1.2:-44512121 | MS.gene46442:CDS |
| CCTTGCAGTTTGTAACTGTT+CGG | 0.445129 | 1.2:+44510533 | None:intergenic |
| CGAGGAGTTCGGTGGTGAAT+GGG | 0.450137 | 1.2:-44512120 | MS.gene46442:CDS |
| AATGATAGTGGAGGCGGTGG+GGG | 0.457534 | 1.2:-44510408 | MS.gene46442:CDS |
| ACCAGAGAAACACAAGGAAA+TGG | 0.460665 | 1.2:-44510506 | MS.gene46442:CDS |
| TCCAGTTCTGGCTCCGGCAC+CGG | 0.460781 | 1.2:+44512438 | None:intergenic |
| ATCGGACCGGACGAGGAGTT+CGG | 0.469936 | 1.2:-44512131 | MS.gene46442:CDS |
| AAAAGACGATTTAAAAGAGC+TGG | 0.472574 | 1.2:-44512359 | MS.gene46442:CDS |
| CCATGGCAACATAATGATAG+TGG | 0.472933 | 1.2:-44510420 | MS.gene46442:CDS |
| CATAATGATAGTGGAGGCGG+TGG | 0.476400 | 1.2:-44510411 | MS.gene46442:CDS |
| CTTGATCTATTGATCTCTAC+TGG | 0.477120 | 1.2:-44511968 | MS.gene46442:intron |
| CCACTATCATTATGTTGCCA+TGG | 0.481591 | 1.2:+44510420 | None:intergenic |
| AAGCAATTCAAGAACAAGGC+AGG | 0.485542 | 1.2:-44510743 | MS.gene46442:CDS |
| ACAGTTATGGTACAGTTTCA+AGG | 0.486936 | 1.2:-44510618 | MS.gene46442:CDS |
| TCACCTCCTCCTCCTTCGGC+TGG | 0.491741 | 1.2:-44510354 | MS.gene46442:CDS |
| CGTTAGTCTTAGAAAGTCGT+TGG | 0.499008 | 1.2:+44512326 | None:intergenic |
| ATGACAGACGGTGCCGGTGC+CGG | 0.503950 | 1.2:-44512451 | MS.gene46442:CDS |
| GTTTATTCTACCTCCTGCTC+CGG | 0.505856 | 1.2:+44512414 | None:intergenic |
| AGATCAAGAGTCTTATCATC+AGG | 0.511696 | 1.2:+44511983 | None:intergenic |
| GTCCGGTCCGATGACGAACC+CGG | 0.519002 | 1.2:+44512142 | None:intergenic |
| GAATTTGGAAGGATGTGGAC+CGG | 0.521500 | 1.2:-44512161 | MS.gene46442:CDS |
| CTTGATCGTGGTTCTTGCCA+CGG | 0.525394 | 1.2:-44510448 | MS.gene46442:CDS |
| TCCGGCTCCAGTTCTGGCTC+CGG | 0.525845 | 1.2:+44512432 | None:intergenic |
| GTTCCTCGACATGACAGTTA+TGG | 0.527074 | 1.2:-44510631 | MS.gene46442:CDS |
| GTACCAGCCGAAGGAGGAGG+AGG | 0.529038 | 1.2:+44510351 | None:intergenic |
| CTGTCATGTCGAGGAACACT+TGG | 0.530452 | 1.2:+44510637 | None:intergenic |
| AAAGATCTAATGCAGCGAAC+CGG | 0.530927 | 1.2:-44512183 | MS.gene46442:CDS |
| TAAGTACCAGCCGAAGGAGG+AGG | 0.535111 | 1.2:+44510348 | None:intergenic |
| ATGTGGACCGGGTTCGTCAT+CGG | 0.538111 | 1.2:-44512149 | MS.gene46442:CDS |
| TGGGTTGAAGAAGAAGTTGA+AGG | 0.539071 | 1.2:-44512101 | MS.gene46442:CDS |
| AGAACTGGAGCCGGAGCAGG+AGG | 0.539151 | 1.2:-44512424 | MS.gene46442:CDS |
| GACTAACGAACAAACCAAAA+CGG | 0.539854 | 1.2:-44512311 | MS.gene46442:CDS |
| GAAGCTGAAGCTGGAGGCGT+TGG | 0.540329 | 1.2:-44512206 | MS.gene46442:CDS |
| TAGTCTTAGAAAGTCGTTGG+TGG | 0.541554 | 1.2:+44512329 | None:intergenic |
| TCACCACCGAACTCCTCGTC+CGG | 0.541854 | 1.2:+44512125 | None:intergenic |
| GAAGGAGCTTCGTTCACGTA+TGG | 0.543242 | 1.2:-44512269 | MS.gene46442:CDS |
| GAAGATGGTGAAGCTGAAGC+TGG | 0.544305 | 1.2:-44512215 | MS.gene46442:CDS |
| GTTCGTCATCGGACCGGACG+AGG | 0.544789 | 1.2:-44512138 | MS.gene46442:CDS |
| GCATGACGCTGTCAAAGACT+TGG | 0.549313 | 1.2:-44510682 | MS.gene46442:CDS |
| GCCGGAGCCAGAACTGGAGC+CGG | 0.550053 | 1.2:-44512433 | MS.gene46442:CDS |
| TAATGATAGTGGAGGCGGTG+GGG | 0.551632 | 1.2:-44510409 | MS.gene46442:CDS |
| GACCGGGTTCGTCATCGGAC+CGG | 0.552658 | 1.2:-44512144 | MS.gene46442:CDS |
| AACCGGAATTTGGAAGGATG+TGG | 0.553790 | 1.2:-44512166 | MS.gene46442:CDS |
| ACGAGCTCGCCCTCGCCACA+TGG | 0.555170 | 1.2:+44510571 | None:intergenic |
| GAAGGAGGAGGAGGTGACGG+GGG | 0.564966 | 1.2:+44510360 | None:intergenic |
| AGACTTGGAGAAGAGTCTAC+TGG | 0.566833 | 1.2:-44510667 | MS.gene46442:CDS |
| ATTGATCATTGTCTTGATCG+TGG | 0.570829 | 1.2:-44510460 | MS.gene46442:CDS |
| AATTTGGAAGGATGTGGACC+GGG | 0.572538 | 1.2:-44512160 | MS.gene46442:CDS |
| AGCAATTCAAGAACAAGGCA+GGG | 0.573394 | 1.2:-44510742 | MS.gene46442:CDS |
| CAGAAAGCAATTCAAGAACA+AGG | 0.578887 | 1.2:-44510747 | MS.gene46442:CDS |
| CAACATAATGATAGTGGAGG+CGG | 0.579137 | 1.2:-44510414 | MS.gene46442:CDS |
| AAAACGGTTCACGATGCTAA+AGG | 0.580222 | 1.2:-44512295 | MS.gene46442:CDS |
| ATCGAGATGACAGACGGTGC+CGG | 0.580893 | 1.2:-44512457 | None:intergenic |
| AAATTCTTCGACGACGTCGA+AGG | 0.582409 | 1.2:-44512385 | MS.gene46442:CDS |
| ATAATGATAGTGGAGGCGGT+GGG | 0.590164 | 1.2:-44510410 | MS.gene46442:CDS |
| GCAGCGAACCGGAATTTGGA+AGG | 0.594827 | 1.2:-44512172 | MS.gene46442:CDS |
| GCAATTCAAGAACAAGGCAG+GGG | 0.612361 | 1.2:-44510741 | MS.gene46442:CDS |
| TATCGAGAGCCATGTGGCGA+GGG | 0.613532 | 1.2:-44510580 | MS.gene46442:CDS |
| TCACGATGCTAAAGGAGTGA+AGG | 0.617381 | 1.2:-44512287 | MS.gene46442:CDS |
| GCGAGCTCGTTTGTGCACAC+TGG | 0.621398 | 1.2:-44510558 | MS.gene46442:CDS |
| CGTCGTCGAAGAATTTGTCG+AGG | 0.622912 | 1.2:+44512392 | None:intergenic |
| ATATCGAGAGCCATGTGGCG+AGG | 0.623389 | 1.2:-44510581 | MS.gene46442:CDS |
| GATTAAGTACCAGCCGAAGG+AGG | 0.630625 | 1.2:+44510345 | None:intergenic |
| TTCTTGCCACGGTGAAACCA+TGG | 0.631742 | 1.2:-44510437 | MS.gene46442:CDS |
| GATGGTGAAGCTGAAGCTGG+AGG | 0.632553 | 1.2:-44512212 | MS.gene46442:CDS |
| TATGGACGAAGAAGTTTCTG+TGG | 0.652355 | 1.2:-44512251 | MS.gene46442:CDS |
| TAAGATTAAGTACCAGCCGA+AGG | 0.654269 | 1.2:+44510342 | None:intergenic |
| CCGAACAGTTACAAACTGCA+AGG | 0.655391 | 1.2:-44510533 | MS.gene46442:CDS |
| CACGTCATCGAGATGACAGA+CGG | 0.659715 | 1.2:-44512463 | None:intergenic |
| GTACCATAACTGTCATGTCG+AGG | 0.662556 | 1.2:+44510628 | None:intergenic |
| CCATCAATGAAATTCAAGAG+AGG | 0.665676 | 1.2:-44510704 | MS.gene46442:CDS |
| TGGCAACATAATGATAGTGG+AGG | 0.674274 | 1.2:-44510417 | MS.gene46442:CDS |
| GGAAGCACCAGAGAAACACA+AGG | 0.690964 | 1.2:-44510512 | MS.gene46442:CDS |
| GGACCGGACGAGGAGTTCGG+TGG | 0.695156 | 1.2:-44512128 | MS.gene46442:CDS |
| TTTGCGGGAAGTTATTACGA+CGG | 0.695451 | 1.2:-44512056 | MS.gene46442:CDS |
| AGTATAGAGAGACTGTTCAA+CGG | 0.733726 | 1.2:-44512033 | MS.gene46442:CDS |
| GGATGATATCGAGAGCCATG+TGG | 0.741101 | 1.2:-44510586 | MS.gene46442:CDS |
| ATGTTGCCATGGTTTCACCG+TGG | 0.746888 | 1.2:+44510431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTAGTTTATAAAAT+TGG | - | chr1.2:44510965-44510984 | MS.gene46442:intron | 10.0% |
| !! | AAATTTATTAGTAGGTTAAT+TGG | - | chr1.2:44510992-44511011 | MS.gene46442:intron | 15.0% |
| !! | TTGGATAAAAATTTATTAGT+AGG | - | chr1.2:44510984-44511003 | MS.gene46442:intron | 15.0% |
| !!! | GTATGAATGTTTTAAAATCT+AGG | - | chr1.2:44510926-44510945 | MS.gene46442:intron | 20.0% |
| !!! | TAGAAGTATAATACAATAAC+AGG | + | chr1.2:44512319-44512338 | None:intergenic | 20.0% |
| !!! | TTAAAGATAACTTGTTTGTT+GGG | - | chr1.2:44511912-44511931 | MS.gene46442:intron | 20.0% |
| !!! | TTAATTGGTGTTTTAGATTA+TGG | - | chr1.2:44511007-44511026 | MS.gene46442:intron | 20.0% |
| !!! | TTTAAAGATAACTTGTTTGT+TGG | - | chr1.2:44511911-44511930 | MS.gene46442:intron | 20.0% |
| !!! | TTTGTCTTTTAATTAAGTTC+AGG | - | chr1.2:44511959-44511978 | MS.gene46442:intron | 20.0% |
| ! | GAATGAAAAATAAACTGAAC+TGG | - | chr1.2:44511078-44511097 | MS.gene46442:intron | 25.0% |
| ! | TTGATATAAAACTACAAGTG+AGG | - | chr1.2:44511116-44511135 | MS.gene46442:intron | 25.0% |
| !! | TAGATTATGGATTATGTACT+AGG | - | chr1.2:44511020-44511039 | MS.gene46442:intron | 25.0% |
| !!! | ACTGATTTTGAAATTTGAGT+CGG | + | chr1.2:44511544-44511563 | None:intergenic | 25.0% |
| AAAAGACGATTTAAAAGAGC+TGG | - | chr1.2:44510439-44510458 | MS.gene46442:CDS | 30.0% | |
| GTCAACATGTCAGTATTTAT+GGG | - | chr1.2:44511299-44511318 | MS.gene46442:intron | 30.0% | |
| TAACAAAACTGAATGTCAAC+CGG | + | chr1.2:44511258-44511277 | None:intergenic | 30.0% | |
| TGAAAAATAAACTGAACTGG+TGG | - | chr1.2:44511081-44511100 | MS.gene46442:intron | 30.0% | |
| TGTCAACATGTCAGTATTTA+TGG | - | chr1.2:44511298-44511317 | MS.gene46442:intron | 30.0% | |
| ! | TTGAATTGCTTTCTGAAGAA+AGG | + | chr1.2:44512046-44512065 | None:intergenic | 30.0% |
| AAATACTGACATGTTGACAC+TGG | + | chr1.2:44511297-44511316 | None:intergenic | 35.0% | |
| ACAGTTATGGTACAGTTTCA+AGG | - | chr1.2:44512180-44512199 | MS.gene46442:CDS | 35.0% | |
| AGATAGTTCAGTTCAGACTT+TGG | + | chr1.2:44511598-44511617 | None:intergenic | 35.0% | |
| AGTATAGAGAGACTGTTCAA+CGG | - | chr1.2:44510765-44510784 | MS.gene46442:CDS | 35.0% | |
| ATCCAAGGAATCTAACTACA+TGG | + | chr1.2:44511484-44511503 | None:intergenic | 35.0% | |
| ATTGATCATTGTCTTGATCG+TGG | - | chr1.2:44512338-44512357 | MS.gene46442:CDS | 35.0% | |
| CAGAAAGCAATTCAAGAACA+AGG | - | chr1.2:44512051-44512070 | MS.gene46442:CDS | 35.0% | |
| CCATCAATGAAATTCAAGAG+AGG | - | chr1.2:44512094-44512113 | MS.gene46442:CDS | 35.0% | |
| CCTCTCTTGAATTTCATTGA+TGG | + | chr1.2:44512097-44512116 | None:intergenic | 35.0% | |
| CTTGATCTATTGATCTCTAC+TGG | - | chr1.2:44510830-44510849 | MS.gene46442:intron | 35.0% | |
| GAAGAAGTTGAAGGATTCAA+TGG | - | chr1.2:44510706-44510725 | MS.gene46442:CDS | 35.0% | |
| GACTAACGAACAAACCAAAA+CGG | - | chr1.2:44510487-44510506 | MS.gene46442:CDS | 35.0% | |
| GATAGTTCAGTTCAGACTTT+GGG | + | chr1.2:44511597-44511616 | None:intergenic | 35.0% | |
| TCAACACTTCTAATCTTCGA+AGG | - | chr1.2:44511197-44511216 | MS.gene46442:intron | 35.0% | |
| TTACTAGTAACCTCACACTA+AGG | + | chr1.2:44511161-44511180 | None:intergenic | 35.0% | |
| TTCCATGTAGTTAGATTCCT+TGG | - | chr1.2:44511479-44511498 | MS.gene46442:intron | 35.0% | |
| ! | AAACAAATTCTCTAGAAGCC+AGG | + | chr1.2:44511663-44511682 | None:intergenic | 35.0% |
| ! | ACATGATTTTCCTTAGTGTG+AGG | - | chr1.2:44511148-44511167 | MS.gene46442:intron | 35.0% |
| ! | AGATCAAGAGTCTTATCATC+AGG | + | chr1.2:44510818-44510837 | None:intergenic | 35.0% |
| !! | AGATAACTTGTTTGTTGGGT+TGG | - | chr1.2:44511916-44511935 | MS.gene46442:intron | 35.0% |
| !! | TGGAGAGTTTTAATCGTTTG+CGG | - | chr1.2:44510726-44510745 | MS.gene46442:CDS | 35.0% |
| AAAACGGTTCACGATGCTAA+AGG | - | chr1.2:44510503-44510522 | MS.gene46442:CDS | 40.0% | |
| AAACTGAACTGGTGGAGAAT+TGG | - | chr1.2:44511089-44511108 | MS.gene46442:intron | 40.0% | |
| AAAGATCTAATGCAGCGAAC+CGG | - | chr1.2:44510615-44510634 | MS.gene46442:CDS | 40.0% | |
| AAGATTCTCCACCATCAATG+AGG | + | chr1.2:44511795-44511814 | None:intergenic | 40.0% | |
| AAGCAATTCAAGAACAAGGC+AGG | - | chr1.2:44512055-44512074 | MS.gene46442:CDS | 40.0% | |
| ACAGTTTCAAGGTGAGCAAT+TGG | - | chr1.2:44512191-44512210 | MS.gene46442:CDS | 40.0% | |
| ACCAGAGAAACACAAGGAAA+TGG | - | chr1.2:44512292-44512311 | MS.gene46442:CDS | 40.0% | |
| ACTACATGGAAACCAAATCC+AGG | + | chr1.2:44511470-44511489 | None:intergenic | 40.0% | |
| AGCAATTCAAGAACAAGGCA+GGG | - | chr1.2:44512056-44512075 | MS.gene46442:CDS | 40.0% | |
| ATCTACATGTATCATGCCAC+CGG | + | chr1.2:44511843-44511862 | None:intergenic | 40.0% | |
| ATGAGGATTTCCTGCATTCA+CGG | + | chr1.2:44511778-44511797 | None:intergenic | 40.0% | |
| ATGCAGGAAATCCTCATTGA+TGG | - | chr1.2:44511781-44511800 | MS.gene46442:intron | 40.0% | |
| ATGTAACTGACCTCACTTAG+TGG | - | chr1.2:44511334-44511353 | MS.gene46442:intron | 40.0% | |
| CCACTATCATTATGTTGCCA+TGG | + | chr1.2:44512381-44512400 | None:intergenic | 40.0% | |
| CCATGGCAACATAATGATAG+TGG | - | chr1.2:44512378-44512397 | MS.gene46442:CDS | 40.0% | |
| CCTTGCAGTTTGTAACTGTT+CGG | + | chr1.2:44512268-44512287 | None:intergenic | 40.0% | |
| CTTTAGACTGAGTGAATCCA+AGG | + | chr1.2:44511499-44511518 | None:intergenic | 40.0% | |
| TATGGACGAAGAAGTTTCTG+TGG | - | chr1.2:44510547-44510566 | MS.gene46442:CDS | 40.0% | |
| TCACTTAGTGGGATAAGACT+GGG | - | chr1.2:44511346-44511365 | MS.gene46442:intron | 40.0% | |
| TCCATTTCCTTGTGTTTCTC+TGG | + | chr1.2:44512296-44512315 | None:intergenic | 40.0% | |
| TGTAACTGACCTCACTTAGT+GGG | - | chr1.2:44511335-44511354 | MS.gene46442:intron | 40.0% | |
| TGTGAGTTTCACTTTGATGC+AGG | - | chr1.2:44512009-44512028 | MS.gene46442:CDS | 40.0% | |
| TTTGCGGGAAGTTATTACGA+CGG | - | chr1.2:44510742-44510761 | MS.gene46442:CDS | 40.0% | |
| ! | AGTTTCTGTGGCGTTGAAAA+AGG | - | chr1.2:44510559-44510578 | MS.gene46442:CDS | 40.0% |
| ! | TAGTCTTAGAAAGTCGTTGG+TGG | + | chr1.2:44510472-44510491 | None:intergenic | 40.0% |
| ! | TGGGTTGAAGAAGAAGTTGA+AGG | - | chr1.2:44510697-44510716 | MS.gene46442:CDS | 40.0% |
| ! | TTTAGCATCGTGAACCGTTT+TGG | + | chr1.2:44510504-44510523 | None:intergenic | 40.0% |
| !! | CAACATAATGATAGTGGAGG+CGG | - | chr1.2:44512384-44512403 | MS.gene46442:CDS | 40.0% |
| !! | CGGCGTTATTTTACTGTTAC+TGG | - | chr1.2:44510785-44510804 | MS.gene46442:intron | 40.0% |
| !! | CGTTAGTCTTAGAAAGTCGT+TGG | + | chr1.2:44510475-44510494 | None:intergenic | 40.0% |
| !! | GGAGAGTTTTAATCGTTTGC+GGG | - | chr1.2:44510727-44510746 | MS.gene46442:CDS | 40.0% |
| !! | TGGCAACATAATGATAGTGG+AGG | - | chr1.2:44512381-44512400 | MS.gene46442:CDS | 40.0% |
| AAATTCTTCGACGACGTCGA+AGG | - | chr1.2:44510413-44510432 | MS.gene46442:CDS | 45.0% | |
| AACCGGAATTTGGAAGGATG+TGG | - | chr1.2:44510632-44510651 | MS.gene46442:CDS | 45.0% | |
| AATTTGGAAGGATGTGGACC+GGG | - | chr1.2:44510638-44510657 | MS.gene46442:CDS | 45.0% | |
| AGACTTGGAGAAGAGTCTAC+TGG | - | chr1.2:44512131-44512150 | MS.gene46442:CDS | 45.0% | |
| AGAGATGTGCTACCTGGATT+TGG | - | chr1.2:44511455-44511474 | MS.gene46442:intron | 45.0% | |
| CAGGAAATCCTCATTGATGG+TGG | - | chr1.2:44511784-44511803 | MS.gene46442:intron | 45.0% | |
| CCGAACAGTTACAAACTGCA+AGG | - | chr1.2:44512265-44512284 | MS.gene46442:CDS | 45.0% | |
| CTCACTTAGTGGGATAAGAC+TGG | - | chr1.2:44511345-44511364 | MS.gene46442:intron | 45.0% | |
| GAATTTGGAAGGATGTGGAC+CGG | - | chr1.2:44510637-44510656 | MS.gene46442:CDS | 45.0% | |
| GCAATTCAAGAACAAGGCAG+GGG | - | chr1.2:44512057-44512076 | MS.gene46442:CDS | 45.0% | |
| GTACCATAACTGTCATGTCG+AGG | + | chr1.2:44512173-44512192 | None:intergenic | 45.0% | |
| GTCCACATCCTTCCAAATTC+CGG | + | chr1.2:44510637-44510656 | None:intergenic | 45.0% | |
| GTTCCTCGACATGACAGTTA+TGG | - | chr1.2:44512167-44512186 | MS.gene46442:CDS | 45.0% | |
| GTTTATTCTACCTCCTGCTC+CGG | + | chr1.2:44510387-44510406 | None:intergenic | 45.0% | |
| TAATGCAGCGAACCGGAATT+TGG | - | chr1.2:44510622-44510641 | MS.gene46442:CDS | 45.0% | |
| TCACGATGCTAAAGGAGTGA+AGG | - | chr1.2:44510511-44510530 | MS.gene46442:CDS | 45.0% | |
| TCTTGAAGAGATGTGCTACC+TGG | - | chr1.2:44511449-44511468 | MS.gene46442:intron | 45.0% | |
| ! | CAGTCTTATCCCACTAAGTG+AGG | + | chr1.2:44511347-44511366 | None:intergenic | 45.0% |
| ! | TGTCTGATTCGTGTCAGTGT+CGG | - | chr1.2:44511229-44511248 | MS.gene46442:intron | 45.0% |
| !! | ATAATGATAGTGGAGGCGGT+GGG | - | chr1.2:44512388-44512407 | MS.gene46442:CDS | 45.0% |
| ACAAGGCAGGGGAAGAATTC+TGG | - | chr1.2:44512068-44512087 | MS.gene46442:CDS | 50.0% | |
| AGGCTGTAAGAGGCTAATGG+AGG | + | chr1.2:44511695-44511714 | None:intergenic | 50.0% | |
| ATCCCCTGCATTCGCACAAT+CGG | + | chr1.2:44511640-44511659 | None:intergenic | 50.0% | |
| ATGTTGCCATGGTTTCACCG+TGG | + | chr1.2:44512370-44512389 | None:intergenic | 50.0% | |
| CACATGTATCATGCCGTGAG+AGG | + | chr1.2:44511715-44511734 | None:intergenic | 50.0% | |
| CGTCGTCGAAGAATTTGTCG+AGG | + | chr1.2:44510409-44510428 | None:intergenic | 50.0% | |
| CTGTCATGTCGAGGAACACT+TGG | + | chr1.2:44512164-44512183 | None:intergenic | 50.0% | |
| CTTGATCGTGGTTCTTGCCA+CGG | - | chr1.2:44512350-44512369 | MS.gene46442:CDS | 50.0% | |
| GAAGATGGTGAAGCTGAAGC+TGG | - | chr1.2:44510583-44510602 | MS.gene46442:CDS | 50.0% | |
| GAAGGAGCTTCGTTCACGTA+TGG | - | chr1.2:44510529-44510548 | MS.gene46442:CDS | 50.0% | |
| GAGAGGCTGTAAGAGGCTAA+TGG | + | chr1.2:44511698-44511717 | None:intergenic | 50.0% | |
| GCATGACGCTGTCAAAGACT+TGG | - | chr1.2:44512116-44512135 | MS.gene46442:CDS | 50.0% | |
| GGATGATATCGAGAGCCATG+TGG | - | chr1.2:44512212-44512231 | MS.gene46442:CDS | 50.0% | |
| GGCTGTAAGAGGCTAATGGA+GGG | + | chr1.2:44511694-44511713 | None:intergenic | 50.0% | |
| GTAAGAGGCTAATGGAGGGT+AGG | + | chr1.2:44511690-44511709 | None:intergenic | 50.0% | |
| TACATGTATCATGCCACCGG+AGG | + | chr1.2:44511840-44511859 | None:intergenic | 50.0% | |
| TAGCCTCTTACAGCCTCTCA+CGG | - | chr1.2:44511699-44511718 | MS.gene46442:intron | 50.0% | |
| TCCTACCCTTGATAAGCCTC+CGG | - | chr1.2:44511821-44511840 | MS.gene46442:intron | 50.0% | |
| TTCTTGCCACGGTGAAACCA+TGG | - | chr1.2:44512361-44512380 | MS.gene46442:CDS | 50.0% | |
| ! | CTACCGATTGTGCGAATGCA+GGG | - | chr1.2:44511634-44511653 | MS.gene46442:intron | 50.0% |
| ! | GGCGTTGAAAAAGGCGAAGA+TGG | - | chr1.2:44510568-44510587 | MS.gene46442:CDS | 50.0% |
| ! | TACCGATTGTGCGAATGCAG+GGG | - | chr1.2:44511635-44511654 | MS.gene46442:intron | 50.0% |
| ! | TCTACCGATTGTGCGAATGC+AGG | - | chr1.2:44511633-44511652 | MS.gene46442:intron | 50.0% |
| ! | TTCGTGTCAGTGTCGGATAC+CGG | - | chr1.2:44511236-44511255 | MS.gene46442:intron | 50.0% |
| !! | ACTACTGACTCCGTGAATGC+AGG | - | chr1.2:44511765-44511784 | MS.gene46442:intron | 50.0% |
| !! | CATAATGATAGTGGAGGCGG+TGG | - | chr1.2:44512387-44512406 | MS.gene46442:CDS | 50.0% |
| !! | GGAAGCACCAGAGAAACACA+AGG | - | chr1.2:44512286-44512305 | MS.gene46442:CDS | 50.0% |
| !! | TAATGATAGTGGAGGCGGTG+GGG | - | chr1.2:44512389-44512408 | MS.gene46442:CDS | 50.0% |
| ACCGGAGGCTTATCAAGGGT+AGG | + | chr1.2:44511825-44511844 | None:intergenic | 55.0% | |
| ATATCGAGAGCCATGTGGCG+AGG | - | chr1.2:44512217-44512236 | MS.gene46442:CDS | 55.0% | |
| ATGCCACCGGAGGCTTATCA+AGG | + | chr1.2:44511830-44511849 | None:intergenic | 55.0% | |
| ATGCCGTGAGAGGCTGTAAG+AGG | + | chr1.2:44511705-44511724 | None:intergenic | 55.0% | |
| ATGTGGACCGGGTTCGTCAT+CGG | - | chr1.2:44510649-44510668 | MS.gene46442:CDS | 55.0% | |
| GATGGTGAAGCTGAAGCTGG+AGG | - | chr1.2:44510586-44510605 | MS.gene46442:CDS | 55.0% | |
| GCAGCGAACCGGAATTTGGA+AGG | - | chr1.2:44510626-44510645 | MS.gene46442:CDS | 55.0% | |
| TAAGTACCAGCCGAAGGAGG+AGG | + | chr1.2:44512453-44512472 | None:intergenic | 55.0% | |
| TACCCTTGATAAGCCTCCGG+TGG | - | chr1.2:44511824-44511843 | MS.gene46442:intron | 55.0% | |
| TATCGAGAGCCATGTGGCGA+GGG | - | chr1.2:44512218-44512237 | MS.gene46442:CDS | 55.0% | |
| TGCCACCGGAGGCTTATCAA+GGG | + | chr1.2:44511829-44511848 | None:intergenic | 55.0% | |
| ! | ACGAGGAGTTCGGTGGTGAA+TGG | - | chr1.2:44510677-44510696 | MS.gene46442:CDS | 55.0% |
| ! | CGAGGAGTTCGGTGGTGAAT+GGG | - | chr1.2:44510678-44510697 | MS.gene46442:CDS | 55.0% |
| !! | AATGATAGTGGAGGCGGTGG+GGG | - | chr1.2:44512390-44512409 | MS.gene46442:CDS | 55.0% |
| ATCGGACCGGACGAGGAGTT+CGG | - | chr1.2:44510667-44510686 | MS.gene46442:CDS | 60.0% | |
| GCGAGCTCGTTTGTGCACAC+TGG | - | chr1.2:44512240-44512259 | MS.gene46442:CDS | 60.0% | |
| TCACCACCGAACTCCTCGTC+CGG | + | chr1.2:44510676-44510695 | None:intergenic | 60.0% | |
| TGTGCGAATGCAGGGGATCC+TGG | - | chr1.2:44511642-44511661 | MS.gene46442:intron | 60.0% | |
| ! | GAAGCTGAAGCTGGAGGCGT+TGG | - | chr1.2:44510592-44510611 | MS.gene46442:CDS | 60.0% |
| AGAACTGGAGCCGGAGCAGG+AGG | - | chr1.2:44510374-44510393 | MS.gene46442:CDS | 65.0% | |
| CCCGTCACCTCCTCCTCCTT+CGG | - | chr1.2:44512440-44512459 | MS.gene46442:CDS | 65.0% | |
| CCGAAGGAGGAGGAGGTGAC+GGG | + | chr1.2:44512443-44512462 | None:intergenic | 65.0% | |
| CGAAGGAGGAGGAGGTGACG+GGG | + | chr1.2:44512442-44512461 | None:intergenic | 65.0% | |
| GACCGGGTTCGTCATCGGAC+CGG | - | chr1.2:44510654-44510673 | MS.gene46442:CDS | 65.0% | |
| GCCGAAGGAGGAGGAGGTGA+CGG | + | chr1.2:44512444-44512463 | None:intergenic | 65.0% | |
| GTACCAGCCGAAGGAGGAGG+AGG | + | chr1.2:44512450-44512469 | None:intergenic | 65.0% | |
| GTCCGGTCCGATGACGAACC+CGG | + | chr1.2:44510659-44510678 | None:intergenic | 65.0% | |
| GTTCGTCATCGGACCGGACG+AGG | - | chr1.2:44510660-44510679 | MS.gene46442:CDS | 65.0% | |
| TCACCTCCTCCTCCTTCGGC+TGG | - | chr1.2:44512444-44512463 | MS.gene46442:CDS | 65.0% | |
| TCCTGCTCCGGCTCCAGTTC+TGG | + | chr1.2:44510375-44510394 | None:intergenic | 65.0% | |
| ! | GAAGGAGGAGGAGGTGACGG+GGG | + | chr1.2:44512441-44512460 | None:intergenic | 65.0% |
| !! | ATGACAGACGGTGCCGGTGC+CGG | - | chr1.2:44510347-44510366 | MS.gene46442:CDS | 65.0% |
| !! | TCCAGTTCTGGCTCCGGCAC+CGG | + | chr1.2:44510363-44510382 | None:intergenic | 65.0% |
| !! | TCCGGCTCCAGTTCTGGCTC+CGG | + | chr1.2:44510369-44510388 | None:intergenic | 65.0% |
| ACGAGCTCGCCCTCGCCACA+TGG | + | chr1.2:44512230-44512249 | None:intergenic | 70.0% | |
| GCCAGAACTGGAGCCGGAGC+AGG | - | chr1.2:44510371-44510390 | MS.gene46442:CDS | 70.0% | |
| GCCGGAGCCAGAACTGGAGC+CGG | - | chr1.2:44510365-44510384 | MS.gene46442:CDS | 70.0% | |
| GGACCGGACGAGGAGTTCGG+TGG | - | chr1.2:44510670-44510689 | MS.gene46442:CDS | 70.0% | |
| GGGGGAGTCTGTGCTGGAGC+AGG | + | chr1.2:44512423-44512442 | None:intergenic | 70.0% | |
| !! | GGTGACGGGGGAGTCTGTGC+TGG | + | chr1.2:44512429-44512448 | None:intergenic | 70.0% |
| ! | GCCGGTGCCGGAGCCAGAAC+TGG | - | chr1.2:44510359-44510378 | MS.gene46442:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44510347 | 44512473 | 44510347 | ID=MS.gene46442 |
| chr1.2 | mRNA | 44510347 | 44512473 | 44510347 | ID=MS.gene46442.t1;Parent=MS.gene46442 |
| chr1.2 | exon | 44511969 | 44512473 | 44511969 | ID=MS.gene46442.t1.exon1;Parent=MS.gene46442.t1 |
| chr1.2 | CDS | 44511969 | 44512473 | 44511969 | ID=cds.MS.gene46442.t1;Parent=MS.gene46442.t1 |
| chr1.2 | exon | 44510347 | 44510789 | 44510347 | ID=MS.gene46442.t1.exon2;Parent=MS.gene46442.t1 |
| chr1.2 | CDS | 44510347 | 44510789 | 44510347 | ID=cds.MS.gene46442.t1;Parent=MS.gene46442.t1 |
| Gene Sequence |
| Protein sequence |
