Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53260.t1 | XP_003629838.2 | 99.6 | 229 | 1 | 0 | 16 | 244 | 1 | 229 | 3.30E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53260.t1 | Q9H2W6 | 39.3 | 135 | 70 | 4 | 101 | 230 | 136 | 263 | 5.8e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53260.t1 | G7L791 | 99.6 | 229 | 1 | 0 | 16 | 244 | 1 | 229 | 2.4e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21111 | MS.gene53260 | PPI |
| MS.gene035256 | MS.gene53260 | PPI |
| MS.gene53260 | MS.gene028903 | PPI |
| MS.gene60861 | MS.gene53260 | PPI |
| MS.gene53260 | MS.gene055808 | PPI |
| MS.gene60589 | MS.gene53260 | PPI |
| MS.gene53260 | MS.gene82915 | PPI |
| MS.gene066059 | MS.gene53260 | PPI |
| MS.gene026968 | MS.gene53260 | PPI |
| MS.gene21110 | MS.gene53260 | PPI |
| MS.gene31468 | MS.gene53260 | PPI |
| MS.gene005399 | MS.gene53260 | PPI |
| MS.gene036564 | MS.gene53260 | PPI |
| MS.gene20938 | MS.gene53260 | PPI |
| MS.gene53260 | MS.gene005865 | PPI |
| MS.gene53260 | MS.gene21227 | PPI |
| MS.gene043435 | MS.gene53260 | PPI |
| MS.gene34167 | MS.gene53260 | PPI |
| MS.gene001687 | MS.gene53260 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53260.t1 | MTR_8g087440 | 99.563 | 229 | 1 | 0 | 16 | 244 | 1 | 229 | 9.54e-172 | 472 |
| MS.gene53260.t1 | MTR_8g028485 | 96.943 | 229 | 7 | 0 | 16 | 244 | 1 | 229 | 1.28e-167 | 462 |
| MS.gene53260.t1 | MTR_7g117435 | 85.821 | 134 | 19 | 0 | 66 | 199 | 4 | 137 | 5.46e-78 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53260.t1 | AT1G14620 | 71.429 | 231 | 65 | 1 | 15 | 244 | 3 | 233 | 2.07e-123 | 350 |
| MS.gene53260.t1 | AT1G14620 | 70.652 | 184 | 53 | 1 | 15 | 197 | 3 | 186 | 1.11e-92 | 272 |
Find 45 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTGGTGATGCTTA+TGG | 0.132920 | 4.1:-13271134 | MS.gene53260:CDS |
| ATAAACATTAGGGTCAATTT+TGG | 0.146402 | 4.1:+13273301 | None:intergenic |
| TTCTCTTTGGTGATGCTTAT+GGG | 0.201628 | 4.1:-13271133 | MS.gene53260:CDS |
| CTTTAGGCTGAACAACAATA+TGG | 0.250918 | 4.1:+13270671 | None:intergenic |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 4.1:+13270655 | None:intergenic |
| TCTTGAAAAGCATAAACATT+AGG | 0.296449 | 4.1:+13273290 | None:intergenic |
| AGACTTTACCTTCTTCTCTT+TGG | 0.302982 | 4.1:-13271146 | MS.gene53260:CDS |
| CAGTACCAGCTCTGAGAAAA+TGG | 0.316816 | 4.1:-13273363 | MS.gene53260:CDS |
| CTTGAAAAGCATAAACATTA+GGG | 0.335207 | 4.1:+13273291 | None:intergenic |
| TCTGCCTTGAAATCAGTCTT+AGG | 0.355740 | 4.1:-13270736 | MS.gene53260:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 4.1:+13271908 | None:intergenic |
| ATCTCCTAAGACTGATTTCA+AGG | 0.411980 | 4.1:+13270732 | None:intergenic |
| GCAAATGTGAGGACTTTGTT+TGG | 0.413949 | 4.1:-13270332 | MS.gene53260:CDS |
| CAAATGTGAGGACTTTGTTT+GGG | 0.420934 | 4.1:-13270331 | MS.gene53260:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 4.1:-13270310 | MS.gene53260:CDS |
| TAAACAAACCTCATGAGAAT+AGG | 0.453827 | 4.1:-13273467 | None:intergenic |
| CAGGATGAAGATGATGTCAT+TGG | 0.454517 | 4.1:-13273414 | MS.gene53260:CDS |
| CCTCTTTAGGTCACTACAAA+GGG | 0.467960 | 4.1:-13271180 | MS.gene53260:intron |
| GGACTTTGTTTGGGTGACTA+AGG | 0.476258 | 4.1:-13270322 | MS.gene53260:CDS |
| TTTCACTGGCTAGGTTTCGA+TGG | 0.485464 | 4.1:-13272193 | MS.gene53260:intron |
| TTTAGGCTGAACAACAATAT+GGG | 0.490540 | 4.1:+13270672 | None:intergenic |
| TGCCACACAGGCTTTCCACT+TGG | 0.491497 | 4.1:+13271107 | None:intergenic |
| TGAAGATGATGTCATTGGTT+CGG | 0.499816 | 4.1:-13273409 | MS.gene53260:CDS |
| TCTCTTTGGTGATGCTTATG+GGG | 0.506698 | 4.1:-13271132 | MS.gene53260:CDS |
| AAGCATCACCAAAGAGAAGA+AGG | 0.518933 | 4.1:+13271138 | None:intergenic |
| GATCTGTCTAGAAATTCATC+AGG | 0.521123 | 4.1:+13272146 | None:intergenic |
| GCCTCTTTAGGTCACTACAA+AGG | 0.536519 | 4.1:-13271181 | MS.gene53260:intron |
| CGGCCACTCTTGATGAGGCG+AGG | 0.556081 | 4.1:-13273389 | MS.gene53260:CDS |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 4.1:-13270658 | MS.gene53260:CDS |
| CACTGGCTAGGTTTCGATGG+CGG | 0.565281 | 4.1:-13272190 | MS.gene53260:intron |
| TGGTTCGGCCACTCTTGATG+AGG | 0.568234 | 4.1:-13273394 | MS.gene53260:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 4.1:+13271902 | None:intergenic |
| ATCAGAGGATACCATGCGTA+AGG | 0.591397 | 4.1:-13271063 | MS.gene53260:intron |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 4.1:-13272136 | MS.gene53260:intron |
| CTCCAAGTGGAAAGCCTGTG+TGG | 0.603277 | 4.1:-13271109 | MS.gene53260:CDS |
| TGAACAACAATATGGGCCAT+CGG | 0.626927 | 4.1:+13270679 | None:intergenic |
| GCTGTTTGAGAGATTGCCTG+TGG | 0.631922 | 4.1:-13273330 | MS.gene53260:CDS |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 4.1:-13271886 | MS.gene53260:intron |
| TAAGTACCCATACCTTGCAT+CGG | 0.633346 | 4.1:+13272124 | None:intergenic |
| TGAGAATAGGAACAAAATCA+CGG | 0.635249 | 4.1:-13273454 | MS.gene53260:CDS |
| AAGAATGTTCACCTTACGCA+TGG | 0.635771 | 4.1:+13271052 | None:intergenic |
| AATCCTCGCCTCATCAAGAG+TGG | 0.640945 | 4.1:+13273386 | None:intergenic |
| GTTCGACATTGGCAAATGTG+AGG | 0.661270 | 4.1:-13270343 | MS.gene53260:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 4.1:-13271122 | MS.gene53260:CDS |
| CAATCTCTCAAACAGCACAG+AGG | 0.749554 | 4.1:+13273337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAACTAAATTTTTAT+GGG | - | chr4.1:13271498-13271517 | MS.gene53260:intron | 10.0% |
| !!! | TCTTTAAAAAAAATTATCAA+TGG | + | chr4.1:13272459-13272478 | None:intergenic | 10.0% |
| !!! | TGCAATTTTTTTTATAAAAA+AGG | + | chr4.1:13272949-13272968 | None:intergenic | 10.0% |
| !!! | TTTATAACTAAATTTTTATG+GGG | - | chr4.1:13271499-13271518 | MS.gene53260:intron | 10.0% |
| !!! | AGTATTTGTATTTTACAAAT+TGG | + | chr4.1:13271146-13271165 | None:intergenic | 15.0% |
| !!! | GGTTTATAACTAAATTTTTA+TGG | - | chr4.1:13271497-13271516 | MS.gene53260:intron | 15.0% |
| !!! | TTTCAATATGTTATTTCTAT+CGG | - | chr4.1:13273151-13273170 | MS.gene53260:intron | 15.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | - | chr4.1:13271897-13271916 | MS.gene53260:CDS | 20.0% |
| !! | AGAACAAGTTAATAATTCAT+TGG | + | chr4.1:13272002-13272021 | None:intergenic | 20.0% |
| !!! | ATCAAAAGTAAAATGGATTT+CGG | - | chr4.1:13270534-13270553 | MS.gene53260:intron | 20.0% |
| !!! | CTTTCAAATACATATTTTGT+CGG | - | chr4.1:13273006-13273025 | MS.gene53260:intron | 20.0% |
| !!! | TAAAAGCATCAAAAGTAAAA+TGG | - | chr4.1:13270527-13270546 | MS.gene53260:intron | 20.0% |
| !!! | TCTTTTCTTCTTTTTTTTGA+AGG | - | chr4.1:13272065-13272084 | MS.gene53260:intron | 20.0% |
| !!! | TGTCCACATTTTTTAAAAAA+GGG | - | chr4.1:13271224-13271243 | MS.gene53260:intron | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr4.1:13271695-13271714 | MS.gene53260:intron | 20.0% |
| !!! | TTACCCTTTTTTAAAAAATG+TGG | + | chr4.1:13271230-13271249 | None:intergenic | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr4.1:13271033-13271052 | None:intergenic | 20.0% |
| !!! | TTGTCCACATTTTTTAAAAA+AGG | - | chr4.1:13271223-13271242 | MS.gene53260:intron | 20.0% |
| ! | AACATTGATCAAAGTGATTA+TGG | - | chr4.1:13270627-13270646 | MS.gene53260:intron | 25.0% |
| ! | AAGATATAGGAAATAAGAAG+GGG | + | chr4.1:13272699-13272718 | None:intergenic | 25.0% |
| ! | ACACGATCAAAAAACAATAA+AGG | + | chr4.1:13272178-13272197 | None:intergenic | 25.0% |
| ! | AGAAAAAGATGGAAAAAATG+AGG | - | chr4.1:13271322-13271341 | MS.gene53260:intron | 25.0% |
| ! | AGAATTTCTGACAAAAGATT+TGG | + | chr4.1:13273321-13273340 | None:intergenic | 25.0% |
| ! | AGATTGTCATCAGATATTTA+AGG | - | chr4.1:13272238-13272257 | MS.gene53260:intron | 25.0% |
| ! | AGTTTGTCAAAAGAAAAAGA+TGG | - | chr4.1:13271311-13271330 | MS.gene53260:intron | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr4.1:13271754-13271773 | MS.gene53260:intron | 25.0% |
| ! | ATTATCAATGGTAAAGCAAA+TGG | + | chr4.1:13272447-13272466 | None:intergenic | 25.0% |
| ! | GAAGATATAGGAAATAAGAA+GGG | + | chr4.1:13272700-13272719 | None:intergenic | 25.0% |
| ! | GAATTTCTGACAAAAGATTT+GGG | + | chr4.1:13273320-13273339 | None:intergenic | 25.0% |
| ! | TAATGAATTCGACCAAAATA+TGG | - | chr4.1:13271018-13271037 | MS.gene53260:intron | 25.0% |
| ! | TCTATTATTATCTAAGAGAC+AGG | + | chr4.1:13272376-13272395 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr4.1:13271755-13271774 | MS.gene53260:intron | 25.0% |
| ! | TGAGAAATATATCAATGTGA+GGG | - | chr4.1:13272331-13272350 | MS.gene53260:intron | 25.0% |
| ! | TGCTGTTAATATTACATAGT+TGG | - | chr4.1:13271368-13271387 | MS.gene53260:intron | 25.0% |
| ! | TTTGTCTATTCAGTGAAATT+TGG | - | chr4.1:13271199-13271218 | MS.gene53260:intron | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | - | chr4.1:13272637-13272656 | MS.gene53260:intron | 25.0% |
| !! | ATAAACATTAGGGTCAATTT+TGG | + | chr4.1:13270417-13270436 | None:intergenic | 25.0% |
| !! | CTTGAAAAGCATAAACATTA+GGG | + | chr4.1:13270427-13270446 | None:intergenic | 25.0% |
| !! | TAAACATTAGGGTCAATTTT+GGG | + | chr4.1:13270416-13270435 | None:intergenic | 25.0% |
| !! | TCTTGAAAAGCATAAACATT+AGG | + | chr4.1:13270428-13270447 | None:intergenic | 25.0% |
| !!! | ATAAGTCAGAAGTATTGAAA+AGG | + | chr4.1:13273255-13273274 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGTTTGT+AGG | - | chr4.1:13273086-13273105 | MS.gene53260:intron | 25.0% |
| !!! | GTGTTTTAGCTTTGAAATAT+TGG | - | chr4.1:13272194-13272213 | MS.gene53260:intron | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | + | chr4.1:13272638-13272657 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTTTTGAAGGA+AGG | - | chr4.1:13272069-13272088 | MS.gene53260:intron | 25.0% |
| !!! | TTTCTTTCTCTTTTCTAAGA+TGG | - | chr4.1:13271280-13271299 | MS.gene53260:intron | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | - | chr4.1:13273186-13273205 | MS.gene53260:intron | 25.0% |
| AAAATAGACTTAGGTGGTTT+GGG | - | chr4.1:13270892-13270911 | MS.gene53260:intron | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr4.1:13271757-13271776 | MS.gene53260:intron | 30.0% | |
| AAATACCACACCAAAGAAAA+AGG | + | chr4.1:13272102-13272121 | None:intergenic | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr4.1:13271861-13271880 | None:intergenic | 30.0% | |
| ACTACAAATGTTCTTAAGCA+AGG | - | chr4.1:13272122-13272141 | MS.gene53260:intron | 30.0% | |
| AGAGACATGAAAACCTAATT+AGG | - | chr4.1:13272421-13272440 | MS.gene53260:intron | 30.0% | |
| ATGAAAATATTAGAGAGTCG+AGG | - | chr4.1:13270842-13270861 | MS.gene53260:intron | 30.0% | |
| ATTGATCAAAGTGATTATGG+TGG | - | chr4.1:13270630-13270649 | MS.gene53260:intron | 30.0% | |
| ATTTCACTGAATAGACAAAC+TGG | + | chr4.1:13271198-13271217 | None:intergenic | 30.0% | |
| CACAACCAAACAAATTGAAA+AGG | + | chr4.1:13273212-13273231 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | + | chr4.1:13271737-13271756 | None:intergenic | 30.0% | |
| CTATAGATATATCATCGCTA+AGG | + | chr4.1:13272742-13272761 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | - | chr4.1:13272330-13272349 | MS.gene53260:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr4.1:13271756-13271775 | MS.gene53260:intron | 30.0% | |
| GGAAGATATAGGAAATAAGA+AGG | + | chr4.1:13272701-13272720 | None:intergenic | 30.0% | |
| GTTGTTGCTAATACAATTTC+AGG | - | chr4.1:13271111-13271130 | MS.gene53260:CDS | 30.0% | |
| TGAGAATAGGAACAAAATCA+CGG | - | chr4.1:13270261-13270280 | MS.gene53260:CDS | 30.0% | |
| TGTTGTACTTACTGATATTG+TGG | - | chr4.1:13271466-13271485 | MS.gene53260:intron | 30.0% | |
| TTAACAACACTGGAAGATAT+AGG | + | chr4.1:13272712-13272731 | None:intergenic | 30.0% | |
| TTGCAGATTACAGAAAATAG+TGG | + | chr4.1:13272894-13272913 | None:intergenic | 30.0% | |
| TTTAGGCTGAACAACAATAT+GGG | + | chr4.1:13273046-13273065 | None:intergenic | 30.0% | |
| ! | AAATTTTTATGGGGTTTCAC+TGG | - | chr4.1:13271508-13271527 | MS.gene53260:intron | 30.0% |
| ! | AGGAAAATGTCCTTTTTCTT+TGG | - | chr4.1:13272089-13272108 | MS.gene53260:intron | 30.0% |
| ! | AGTAAAATGGATTTCGGTTT+CGG | - | chr4.1:13270540-13270559 | MS.gene53260:intron | 30.0% |
| ! | TAATTTTACTATGCTCTGCT+TGG | - | chr4.1:13270489-13270508 | MS.gene53260:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr4.1:13271826-13271845 | None:intergenic | 30.0% |
| !! | TTATTTCTATCGGTATGTGT+CGG | - | chr4.1:13273161-13273180 | MS.gene53260:intron | 30.0% |
| !!! | AGTATTGAAAAGGCTAGTTT+TGG | + | chr4.1:13273245-13273264 | None:intergenic | 30.0% |
| AAATATATCAATGTGAGGGC+AGG | - | chr4.1:13272335-13272354 | MS.gene53260:intron | 35.0% | |
| AACTTCAATCTACTGTTGGA+AGG | - | chr4.1:13273120-13273139 | MS.gene53260:intron | 35.0% | |
| AGACTTTACCTTCTTCTCTT+TGG | - | chr4.1:13272569-13272588 | MS.gene53260:intron | 35.0% | |
| AGTATGGAGAGTAGATCAAA+TGG | - | chr4.1:13270944-13270963 | MS.gene53260:intron | 35.0% | |
| AGTGATTATGGTGGTTGAAA+TGG | - | chr4.1:13270639-13270658 | MS.gene53260:intron | 35.0% | |
| ATGGGTACTTAAGTAAGAGT+TGG | - | chr4.1:13271603-13271622 | MS.gene53260:intron | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr4.1:13271829-13271848 | MS.gene53260:intron | 35.0% | |
| CTCCATACTACAGAATCTAT+AGG | + | chr4.1:13270933-13270952 | None:intergenic | 35.0% | |
| CTCTTATTACTTGCCTCTTT+AGG | - | chr4.1:13272522-13272541 | MS.gene53260:intron | 35.0% | |
| CTGACAAAAGATTTGGGTAA+AGG | + | chr4.1:13273314-13273333 | None:intergenic | 35.0% | |
| CTTTAGGCTGAACAACAATA+TGG | + | chr4.1:13273047-13273066 | None:intergenic | 35.0% | |
| GAAAATAGACTTAGGTGGTT+TGG | - | chr4.1:13270891-13270910 | MS.gene53260:intron | 35.0% | |
| GACCTATAGATTCTGTAGTA+TGG | - | chr4.1:13270928-13270947 | MS.gene53260:intron | 35.0% | |
| GATCTGTCTAGAAATTCATC+AGG | + | chr4.1:13271572-13271591 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | - | chr4.1:13273361-13273380 | MS.gene53260:CDS | 35.0% | |
| GTAAAGCAAATGGCCTAATT+AGG | + | chr4.1:13272437-13272456 | None:intergenic | 35.0% | |
| GTAAGGTGAACATTCTTATG+TGG | - | chr4.1:13272669-13272688 | MS.gene53260:intron | 35.0% | |
| GTCCTCAAAATTGTGAGTAT+TGG | + | chr4.1:13271176-13271195 | None:intergenic | 35.0% | |
| GTGGTAAGACTATATGAGAT+AGG | - | chr4.1:13270812-13270831 | MS.gene53260:intron | 35.0% | |
| TATTATCTAAGAGACAGGAG+AGG | + | chr4.1:13272371-13272390 | None:intergenic | 35.0% | |
| TCGTCATATAGTTGCTATAG+TGG | - | chr4.1:13272825-13272844 | MS.gene53260:intron | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | - | chr4.1:13272094-13272113 | MS.gene53260:intron | 35.0% |
| ! | ACTTCTGACTTATTTCTCTG+TGG | - | chr4.1:13273262-13273281 | MS.gene53260:intron | 35.0% |
| ! | AGGTTAATGTCTGAAACACA+AGG | - | chr4.1:13271342-13271361 | MS.gene53260:intron | 35.0% |
| ! | ATCTCCTAAGACTGATTTCA+AGG | + | chr4.1:13272986-13273005 | None:intergenic | 35.0% |
| ! | CAAATGTGAGGACTTTGTTT+GGG | - | chr4.1:13273384-13273403 | MS.gene53260:CDS | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | - | chr4.1:13273074-13273093 | MS.gene53260:intron | 35.0% |
| ! | GACCAATACTCACAATTTTG+AGG | - | chr4.1:13271171-13271190 | MS.gene53260:CDS | 35.0% |
| ! | GGTTAATGTCTGAAACACAA+GGG | - | chr4.1:13271343-13271362 | MS.gene53260:intron | 35.0% |
| ! | GTAAGACTGGCAATTTTGTA+TGG | - | chr4.1:13270712-13270731 | MS.gene53260:CDS | 35.0% |
| ! | TGAAGATGATGTCATTGGTT+CGG | - | chr4.1:13270306-13270325 | MS.gene53260:CDS | 35.0% |
| ! | TTTAAAAACTCAGCTTGCTC+AGG | + | chr4.1:13273439-13273458 | None:intergenic | 35.0% |
| ! | TTTGTATGGAACAGAGTGTT+GGG | - | chr4.1:13270726-13270745 | MS.gene53260:CDS | 35.0% |
| ! | TTTTGTATGGAACAGAGTGT+TGG | - | chr4.1:13270725-13270744 | MS.gene53260:CDS | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+AGG | - | chr4.1:13270883-13270902 | MS.gene53260:intron | 35.0% |
| !! | CATAGTTGGTAATTGTGCTA+TGG | - | chr4.1:13271382-13271401 | MS.gene53260:intron | 35.0% |
| !! | GGATGTTTTTGAATTCGTTC+AGG | - | chr4.1:13270282-13270301 | MS.gene53260:CDS | 35.0% |
| !! | GTAGGCCTTTTCAATTTGTT+TGG | - | chr4.1:13273204-13273223 | MS.gene53260:intron | 35.0% |
| !! | TCAATTTTGGGAATAACCAC+AGG | + | chr4.1:13270404-13270423 | None:intergenic | 35.0% |
| !! | TTCTCTTTGGTGATGCTTAT+GGG | - | chr4.1:13272582-13272601 | MS.gene53260:intron | 35.0% |
| !!! | CGTTGATTTTATTCTCGTGT+TGG | + | chr4.1:13270762-13270781 | None:intergenic | 35.0% |
| AAATCAACGTAGCAGAGATG+AGG | - | chr4.1:13270773-13270792 | MS.gene53260:intron | 40.0% | |
| AAGAATGTTCACCTTACGCA+TGG | + | chr4.1:13272666-13272685 | None:intergenic | 40.0% | |
| AAGACTGAACATGCACTAAC+AGG | + | chr4.1:13272274-13272293 | None:intergenic | 40.0% | |
| AAGCATCACCAAAGAGAAGA+AGG | + | chr4.1:13272580-13272599 | None:intergenic | 40.0% | |
| ACCTATAGCAGAAAAGATGG+TGG | - | chr4.1:13270869-13270888 | MS.gene53260:intron | 40.0% | |
| ACTGATATTGTGGCTGTTCT+TGG | - | chr4.1:13271476-13271495 | MS.gene53260:intron | 40.0% | |
| ACTTGAAGGGGGAATTCTAT+CGG | - | chr4.1:13270683-13270702 | MS.gene53260:CDS | 40.0% | |
| AGCACCTATAGCAGAAAAGA+TGG | - | chr4.1:13270866-13270885 | MS.gene53260:intron | 40.0% | |
| ATATTGTCCTCGTCTTCCTT+TGG | - | chr4.1:13272023-13272042 | MS.gene53260:intron | 40.0% | |
| ATGGAGAGTAGATCAAATGG+AGG | - | chr4.1:13270947-13270966 | MS.gene53260:intron | 40.0% | |
| CAGGATGAAGATGATGTCAT+TGG | - | chr4.1:13270301-13270320 | MS.gene53260:CDS | 40.0% | |
| CCTATAGCACTATTGCATAG+CGG | - | chr4.1:13272856-13272875 | MS.gene53260:intron | 40.0% | |
| CCTCTTTAGGTCACTACAAA+GGG | - | chr4.1:13272535-13272554 | MS.gene53260:intron | 40.0% | |
| CTTCAGAGATAATTGCTGTG+TGG | - | chr4.1:13272490-13272509 | MS.gene53260:intron | 40.0% | |
| GCAAATGTGAGGACTTTGTT+TGG | - | chr4.1:13273383-13273402 | MS.gene53260:CDS | 40.0% | |
| GCGTAACTTCAATCTACTGT+TGG | - | chr4.1:13273116-13273135 | MS.gene53260:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | - | chr4.1:13273405-13273424 | MS.gene53260:CDS | 40.0% | |
| TAAGTACCCATACCTTGCAT+CGG | + | chr4.1:13271594-13271613 | None:intergenic | 40.0% | |
| TCTGCCTTGAAATCAGTCTT+AGG | - | chr4.1:13272979-13272998 | MS.gene53260:intron | 40.0% | |
| TGAACAACAATATGGGCCAT+CGG | + | chr4.1:13273039-13273058 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGACTTAGG+TGG | - | chr4.1:13270886-13270905 | MS.gene53260:intron | 40.0% | |
| ! | AGGCTGCTATTTAACAACAC+TGG | + | chr4.1:13272722-13272741 | None:intergenic | 40.0% |
| ! | TCCACCATCTTTTCTGCTAT+AGG | + | chr4.1:13270873-13270892 | None:intergenic | 40.0% |
| !! | CTTCTCTTTGGTGATGCTTA+TGG | - | chr4.1:13272581-13272600 | MS.gene53260:intron | 40.0% |
| !! | TCTCTTTGGTGATGCTTATG+GGG | - | chr4.1:13272583-13272602 | MS.gene53260:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | + | chr4.1:13272623-13272642 | None:intergenic | 40.0% |
| ACAGATCCGATGCAAGGTAT+GGG | - | chr4.1:13271585-13271604 | MS.gene53260:intron | 45.0% | |
| ATCAGAGGATACCATGCGTA+AGG | - | chr4.1:13272652-13272671 | MS.gene53260:intron | 45.0% | |
| ATGACATTTGCTCGCTCCAA+AGG | + | chr4.1:13272042-13272061 | None:intergenic | 45.0% | |
| CAATCTCTCAAACAGCACAG+AGG | + | chr4.1:13270381-13270400 | None:intergenic | 45.0% | |
| CCCTTTGTAGTGACCTAAAG+AGG | + | chr4.1:13272538-13272557 | None:intergenic | 45.0% | |
| CCGCTATGCAATAGTGCTAT+AGG | + | chr4.1:13272859-13272878 | None:intergenic | 45.0% | |
| CTATCGGACAGTTGTAAGAC+TGG | - | chr4.1:13270699-13270718 | MS.gene53260:CDS | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | + | chr4.1:13273063-13273082 | None:intergenic | 45.0% | |
| GCCTCTTTAGGTCACTACAA+AGG | - | chr4.1:13272534-13272553 | MS.gene53260:intron | 45.0% | |
| GTTCGACATTGGCAAATGTG+AGG | - | chr4.1:13273372-13273391 | MS.gene53260:CDS | 45.0% | |
| GTTGAAATGGAGATGAGGCT+CGG | - | chr4.1:13270652-13270671 | MS.gene53260:CDS | 45.0% | |
| TATCAATGTGAGGGCAGGAT+AGG | - | chr4.1:13272340-13272359 | MS.gene53260:intron | 45.0% | |
| TCTAAGAGACAGGAGAGGAT+TGG | + | chr4.1:13272366-13272385 | None:intergenic | 45.0% | |
| TGGTGGTTGAAATGGAGATG+AGG | - | chr4.1:13270647-13270666 | MS.gene53260:CDS | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr4.1:13271762-13271781 | MS.gene53260:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | - | chr4.1:13271579-13271598 | MS.gene53260:intron | 45.0% | |
| TTGAAATGGAGATGAGGCTC+GGG | - | chr4.1:13270653-13270672 | MS.gene53260:CDS | 45.0% | |
| ! | AAGCCTTTTCCAACTAGGTG+GGG | + | chr4.1:13271087-13271106 | None:intergenic | 45.0% |
| ! | CAACCAAGCCTTTTCCAACT+AGG | + | chr4.1:13271092-13271111 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCAACTAGGT+GGG | + | chr4.1:13271088-13271107 | None:intergenic | 45.0% |
| ! | CTCGGGTGACTTAACTTGAA+GGG | - | chr4.1:13270670-13270689 | MS.gene53260:CDS | 45.0% |
| ! | GGACTTTGTTTGGGTGACTA+AGG | - | chr4.1:13273393-13273412 | MS.gene53260:CDS | 45.0% |
| ! | TCGGGTGACTTAACTTGAAG+GGG | - | chr4.1:13270671-13270690 | MS.gene53260:CDS | 45.0% |
| ! | TTTATGGGGTTTCACTGGCT+AGG | - | chr4.1:13271513-13271532 | MS.gene53260:intron | 45.0% |
| ! | TTTCACTGGCTAGGTTTCGA+TGG | - | chr4.1:13271522-13271541 | MS.gene53260:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | - | chr4.1:13273020-13273039 | MS.gene53260:intron | 45.0% |
| !! | CAGTACCAGCTCTGAGAAAA+TGG | - | chr4.1:13270352-13270371 | MS.gene53260:CDS | 45.0% |
| !! | GAGGGCATTTAGGAAAGACT+TGG | - | chr4.1:13270991-13271010 | MS.gene53260:intron | 45.0% |
| AATCCTCGCCTCATCAAGAG+TGG | + | chr4.1:13270332-13270351 | None:intergenic | 50.0% | |
| AGTCAGATCGCTAGTGGTAG+AGG | - | chr4.1:13270972-13270991 | MS.gene53260:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr4.1:13270785-13270804 | MS.gene53260:intron | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | - | chr4.1:13273057-13273076 | MS.gene53260:intron | 50.0% | |
| CCACCTAGTTGGAAAAGGCT+TGG | - | chr4.1:13271086-13271105 | MS.gene53260:CDS | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr4.1:13271775-13271794 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | - | chr4.1:13271584-13271603 | MS.gene53260:intron | 50.0% | |
| GAGGATAGTCAGATCGCTAG+TGG | - | chr4.1:13270966-13270985 | MS.gene53260:intron | 50.0% | |
| GCTGTTTGAGAGATTGCCTG+TGG | - | chr4.1:13270385-13270404 | MS.gene53260:intron | 50.0% | |
| GTCAGATCGCTAGTGGTAGA+GGG | - | chr4.1:13270973-13270992 | MS.gene53260:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr4.1:13271816-13271835 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCAACTAGG+TGG | + | chr4.1:13271089-13271108 | None:intergenic | 50.0% |
| ! | CGGGTGACTTAACTTGAAGG+GGG | - | chr4.1:13270672-13270691 | MS.gene53260:CDS | 50.0% |
| ! | CTTTTCCAACTAGGTGGGGT+CGG | + | chr4.1:13271083-13271102 | None:intergenic | 50.0% |
| ! | GCTCGGGTGACTTAACTTGA+AGG | - | chr4.1:13270669-13270688 | MS.gene53260:CDS | 50.0% |
| ! | GGCAACCATTTTCTCAGAGC+TGG | + | chr4.1:13270360-13270379 | None:intergenic | 50.0% |
| !! | GCTAGTGGTAGAGGGCATTT+AGG | - | chr4.1:13270981-13271000 | MS.gene53260:intron | 50.0% |
| !! | GTATGGAACAGAGTGTTGGG+CGG | - | chr4.1:13270729-13270748 | MS.gene53260:CDS | 50.0% |
| CGACCCCACCTAGTTGGAAA+AGG | - | chr4.1:13271081-13271100 | MS.gene53260:CDS | 55.0% | |
| CTCCAAGTGGAAAGCCTGTG+TGG | - | chr4.1:13272606-13272625 | MS.gene53260:intron | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | - | chr4.1:13272593-13272612 | MS.gene53260:intron | 55.0% | |
| TGCCACACAGGCTTTCCACT+TGG | + | chr4.1:13272611-13272630 | None:intergenic | 55.0% | |
| ! | AGGATGTTGCGTTGGTCGTG+TGG | - | chr4.1:13270793-13270812 | MS.gene53260:intron | 55.0% |
| ! | CACTGGCTAGGTTTCGATGG+CGG | - | chr4.1:13271525-13271544 | MS.gene53260:intron | 55.0% |
| ! | TGGTTCGGCCACTCTTGATG+AGG | - | chr4.1:13270321-13270340 | MS.gene53260:CDS | 55.0% |
| ACTAGGTGGGGTCGGCTACA+TGG | + | chr4.1:13271075-13271094 | None:intergenic | 60.0% | |
| GCTCGCTCCAAAGGAAGACG+AGG | + | chr4.1:13272033-13272052 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+TGG | - | chr4.1:13271075-13271094 | MS.gene53260:CDS | 60.0% | |
| CGGCCACTCTTGATGAGGCG+AGG | - | chr4.1:13270326-13270345 | MS.gene53260:CDS | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr4.1:13271810-13271829 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13270260 | 13273477 | 13270260 | ID=MS.gene53260 |
| chr4.1 | mRNA | 13270260 | 13273477 | 13270260 | ID=MS.gene53260.t1;Parent=MS.gene53260 |
| chr4.1 | exon | 13273284 | 13273477 | 13273284 | ID=MS.gene53260.t1.exon1;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13273284 | 13273477 | 13273284 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| chr4.1 | exon | 13272137 | 13272202 | 13272137 | ID=MS.gene53260.t1.exon2;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13272137 | 13272202 | 13272137 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| chr4.1 | exon | 13271887 | 13271961 | 13271887 | ID=MS.gene53260.t1.exon3;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13271887 | 13271961 | 13271887 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| chr4.1 | exon | 13271064 | 13271193 | 13271064 | ID=MS.gene53260.t1.exon4;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13271064 | 13271193 | 13271064 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| chr4.1 | exon | 13270642 | 13270767 | 13270642 | ID=MS.gene53260.t1.exon5;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13270642 | 13270767 | 13270642 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| chr4.1 | exon | 13270260 | 13270403 | 13270260 | ID=MS.gene53260.t1.exon6;Parent=MS.gene53260.t1 |
| chr4.1 | CDS | 13270260 | 13270403 | 13270260 | ID=cds.MS.gene53260.t1;Parent=MS.gene53260.t1 |
| Gene Sequence |
| Protein sequence |
