Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53263.t1 | XP_003629838.2 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 3.10E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53263.t1 | Q9H2W6 | 39.3 | 135 | 70 | 4 | 86 | 215 | 136 | 263 | 5.5e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53263.t1 | G7L791 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 2.2e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53263 | MS.gene60861 | PPI |
| MS.gene53263 | MS.gene34167 | PPI |
| MS.gene53263 | MS.gene005399 | PPI |
| MS.gene53263 | MS.gene005865 | PPI |
| MS.gene53263 | MS.gene066059 | PPI |
| MS.gene53263 | MS.gene21110 | PPI |
| MS.gene53263 | MS.gene21227 | PPI |
| MS.gene53263 | MS.gene036564 | PPI |
| MS.gene53263 | MS.gene31468 | PPI |
| MS.gene53263 | MS.gene026968 | PPI |
| MS.gene53263 | MS.gene21111 | PPI |
| MS.gene53263 | MS.gene035256 | PPI |
| MS.gene53263 | MS.gene028903 | PPI |
| MS.gene53263 | MS.gene055808 | PPI |
| MS.gene53263 | MS.gene20938 | PPI |
| MS.gene53263 | MS.gene60589 | PPI |
| MS.gene53263 | MS.gene82915 | PPI |
| MS.gene53263 | MS.gene001687 | PPI |
| MS.gene53263 | MS.gene043435 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53263.t1 | MTR_8g087440 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 7.69e-172 | 472 |
| MS.gene53263.t1 | MTR_8g028485 | 96.943 | 229 | 7 | 0 | 1 | 229 | 1 | 229 | 9.85e-168 | 461 |
| MS.gene53263.t1 | MTR_7g117435 | 85.821 | 134 | 19 | 0 | 51 | 184 | 4 | 137 | 5.58e-78 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53263.t1 | AT1G14620 | 72.889 | 225 | 60 | 1 | 6 | 229 | 9 | 233 | 3.55e-123 | 349 |
| MS.gene53263.t1 | AT1G14620 | 72.472 | 178 | 48 | 1 | 6 | 182 | 9 | 186 | 1.68e-92 | 271 |
Find 43 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTGGTGATGCTTA+TGG | 0.132920 | 4.3:-13413200 | MS.gene53263:CDS |
| ATAAACATTAGGGTCAATTT+TGG | 0.146402 | 4.3:+13415367 | None:intergenic |
| TTCTCTTTGGTGATGCTTAT+GGG | 0.201628 | 4.3:-13413199 | MS.gene53263:CDS |
| CTTTAGGCTGAACAACAATA+TGG | 0.250918 | 4.3:+13412737 | None:intergenic |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 4.3:+13412721 | None:intergenic |
| TCTTGAAAAGCATAAACATT+AGG | 0.296449 | 4.3:+13415356 | None:intergenic |
| AGACTTTACCTTCTTCTCTT+TGG | 0.302982 | 4.3:-13413212 | MS.gene53263:CDS |
| CAGTACCAGCTCTGAGAAAA+TGG | 0.316816 | 4.3:-13415429 | MS.gene53263:CDS |
| CTTGAAAAGCATAAACATTA+GGG | 0.335207 | 4.3:+13415357 | None:intergenic |
| TCTGCCTTGAAATCAGTCTT+AGG | 0.355740 | 4.3:-13412802 | MS.gene53263:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 4.3:+13413974 | None:intergenic |
| ATCTCCTAAGACTGATTTCA+AGG | 0.411980 | 4.3:+13412798 | None:intergenic |
| GCAAATGTGAGGACTTTGTT+TGG | 0.413949 | 4.3:-13412398 | MS.gene53263:CDS |
| CAAATGTGAGGACTTTGTTT+GGG | 0.420934 | 4.3:-13412397 | MS.gene53263:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 4.3:-13412376 | MS.gene53263:CDS |
| CAGGATGAAGATGATGTCAT+TGG | 0.454517 | 4.3:-13415480 | None:intergenic |
| CCTCTTTAGGTCACTACAAA+GGG | 0.467960 | 4.3:-13413246 | MS.gene53263:intron |
| GGACTTTGTTTGGGTGACTA+AGG | 0.476258 | 4.3:-13412388 | MS.gene53263:CDS |
| TTTCACTGGCTAGGTTTCGA+TGG | 0.485464 | 4.3:-13414259 | MS.gene53263:intron |
| TTTAGGCTGAACAACAATAT+GGG | 0.490540 | 4.3:+13412738 | None:intergenic |
| TGCCACACAGGCTTTCCACT+TGG | 0.491497 | 4.3:+13413173 | None:intergenic |
| TGAAGATGATGTCATTGGTT+CGG | 0.499816 | 4.3:-13415475 | MS.gene53263:CDS |
| TCTCTTTGGTGATGCTTATG+GGG | 0.506698 | 4.3:-13413198 | MS.gene53263:CDS |
| AAGCATCACCAAAGAGAAGA+AGG | 0.518933 | 4.3:+13413204 | None:intergenic |
| GATCTGTCTAGAAATTCATC+AGG | 0.521123 | 4.3:+13414212 | None:intergenic |
| GCCTCTTTAGGTCACTACAA+AGG | 0.536519 | 4.3:-13413247 | MS.gene53263:intron |
| CGGCCACTCTTGATGAGGCG+AGG | 0.556081 | 4.3:-13415455 | MS.gene53263:CDS |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 4.3:-13412724 | MS.gene53263:CDS |
| CACTGGCTAGGTTTCGATGG+CGG | 0.565281 | 4.3:-13414256 | MS.gene53263:intron |
| TGGTTCGGCCACTCTTGATG+AGG | 0.568234 | 4.3:-13415460 | MS.gene53263:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 4.3:+13413968 | None:intergenic |
| ATCAGAGGATACCATGCGTA+AGG | 0.591397 | 4.3:-13413129 | MS.gene53263:intron |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 4.3:-13414202 | MS.gene53263:intron |
| CTCCAAGTGGAAAGCCTGTG+TGG | 0.603277 | 4.3:-13413175 | MS.gene53263:CDS |
| TGAACAACAATATGGGCCAT+CGG | 0.626927 | 4.3:+13412745 | None:intergenic |
| GCTGTTTGAGAGATTGCCTG+TGG | 0.631922 | 4.3:-13415396 | MS.gene53263:CDS |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 4.3:-13413952 | MS.gene53263:intron |
| TAAGTACCCATACCTTGCAT+CGG | 0.633346 | 4.3:+13414190 | None:intergenic |
| AAGAATGTTCACCTTACGCA+TGG | 0.635771 | 4.3:+13413118 | None:intergenic |
| AATCCTCGCCTCATCAAGAG+TGG | 0.640945 | 4.3:+13415452 | None:intergenic |
| GTTCGACATTGGCAAATGTG+AGG | 0.661270 | 4.3:-13412409 | MS.gene53263:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 4.3:-13413188 | MS.gene53263:CDS |
| CAATCTCTCAAACAGCACAG+AGG | 0.749554 | 4.3:+13415403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAACTAAATTTTTAT+GGG | - | chr4.3:13413519-13413538 | MS.gene53263:intron | 10.0% |
| !!! | TCTTTAAAAAAAATTATCAA+TGG | + | chr4.3:13414480-13414499 | None:intergenic | 10.0% |
| !!! | TGCAATTTTTTTTATAAAAA+AGG | + | chr4.3:13414970-13414989 | None:intergenic | 10.0% |
| !!! | TTTATAACTAAATTTTTATG+GGG | - | chr4.3:13413520-13413539 | MS.gene53263:intron | 10.0% |
| !!! | AGTATTTGTATTTTACAAAT+TGG | + | chr4.3:13413167-13413186 | None:intergenic | 15.0% |
| !!! | GGTTTATAACTAAATTTTTA+TGG | - | chr4.3:13413518-13413537 | MS.gene53263:intron | 15.0% |
| !!! | TTTCAATATGTTATTTCTAT+CGG | - | chr4.3:13415172-13415191 | MS.gene53263:intron | 15.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | - | chr4.3:13413918-13413937 | MS.gene53263:intron | 20.0% |
| !! | AGAACAAGTTAATAATTCAT+TGG | + | chr4.3:13414023-13414042 | None:intergenic | 20.0% |
| !!! | ATCAAAAGTAAAATGGATTT+CGG | - | chr4.3:13412555-13412574 | MS.gene53263:intron | 20.0% |
| !!! | CTTTCAAATACATATTTTGT+CGG | - | chr4.3:13415027-13415046 | MS.gene53263:intron | 20.0% |
| !!! | TAAAAGCATCAAAAGTAAAA+TGG | - | chr4.3:13412548-13412567 | MS.gene53263:intron | 20.0% |
| !!! | TCTTTTCTTCTTTTTTTTGA+AGG | - | chr4.3:13414086-13414105 | MS.gene53263:intron | 20.0% |
| !!! | TGTCCACATTTTTTAAAAAA+GGG | - | chr4.3:13413245-13413264 | MS.gene53263:intron | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr4.3:13413716-13413735 | MS.gene53263:intron | 20.0% |
| !!! | TTACCCTTTTTTAAAAAATG+TGG | + | chr4.3:13413251-13413270 | None:intergenic | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr4.3:13413054-13413073 | None:intergenic | 20.0% |
| !!! | TTGTCCACATTTTTTAAAAA+AGG | - | chr4.3:13413244-13413263 | MS.gene53263:intron | 20.0% |
| ! | AACATTGATCAAAGTGATTA+TGG | - | chr4.3:13412648-13412667 | MS.gene53263:intron | 25.0% |
| ! | AAGATATAGGAAATAAGAAG+GGG | + | chr4.3:13414720-13414739 | None:intergenic | 25.0% |
| ! | ACACGATCAAAAAACAATAA+AGG | + | chr4.3:13414199-13414218 | None:intergenic | 25.0% |
| ! | AGAAAAAGATGGAAAAAATG+AGG | - | chr4.3:13413343-13413362 | MS.gene53263:intron | 25.0% |
| ! | AGAATTTCTGACAAAAGATT+TGG | + | chr4.3:13415342-13415361 | None:intergenic | 25.0% |
| ! | AGATTGTCATCAGATATTTA+AGG | - | chr4.3:13414259-13414278 | MS.gene53263:intron | 25.0% |
| ! | AGTTTGTCAAAAGAAAAAGA+TGG | - | chr4.3:13413332-13413351 | MS.gene53263:intron | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr4.3:13413775-13413794 | MS.gene53263:intron | 25.0% |
| ! | ATTATCAATGGTAAAGCAAA+TGG | + | chr4.3:13414468-13414487 | None:intergenic | 25.0% |
| ! | GAAGATATAGGAAATAAGAA+GGG | + | chr4.3:13414721-13414740 | None:intergenic | 25.0% |
| ! | GAATTTCTGACAAAAGATTT+GGG | + | chr4.3:13415341-13415360 | None:intergenic | 25.0% |
| ! | TAATGAATTCGACCAAAATA+TGG | - | chr4.3:13413039-13413058 | MS.gene53263:intron | 25.0% |
| ! | TCTATTATTATCTAAGAGAC+AGG | + | chr4.3:13414397-13414416 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr4.3:13413776-13413795 | MS.gene53263:intron | 25.0% |
| ! | TGAGAAATATATCAATGTGA+GGG | - | chr4.3:13414352-13414371 | MS.gene53263:intron | 25.0% |
| ! | TGCTGTTAATATTACATAGT+TGG | - | chr4.3:13413389-13413408 | MS.gene53263:intron | 25.0% |
| ! | TTTGTCTATTCAGTGAAATT+TGG | - | chr4.3:13413220-13413239 | MS.gene53263:CDS | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | - | chr4.3:13414658-13414677 | MS.gene53263:intron | 25.0% |
| !! | ATAAACATTAGGGTCAATTT+TGG | + | chr4.3:13412438-13412457 | None:intergenic | 25.0% |
| !! | CTTGAAAAGCATAAACATTA+GGG | + | chr4.3:13412448-13412467 | None:intergenic | 25.0% |
| !! | TAAACATTAGGGTCAATTTT+GGG | + | chr4.3:13412437-13412456 | None:intergenic | 25.0% |
| !! | TCTTGAAAAGCATAAACATT+AGG | + | chr4.3:13412449-13412468 | None:intergenic | 25.0% |
| !!! | ATAAGTCAGAAGTATTGAAA+AGG | + | chr4.3:13415276-13415295 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGTTTGT+AGG | - | chr4.3:13415107-13415126 | MS.gene53263:intron | 25.0% |
| !!! | GTGTTTTAGCTTTGAAATAT+TGG | - | chr4.3:13414215-13414234 | MS.gene53263:CDS | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | + | chr4.3:13414659-13414678 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTTTTGAAGGA+AGG | - | chr4.3:13414090-13414109 | MS.gene53263:intron | 25.0% |
| !!! | TTTCTTTCTCTTTTCTAAGA+TGG | - | chr4.3:13413301-13413320 | MS.gene53263:intron | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | - | chr4.3:13415207-13415226 | MS.gene53263:intron | 25.0% |
| AAAATAGACTTAGGTGGTTT+GGG | - | chr4.3:13412913-13412932 | MS.gene53263:intron | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr4.3:13413778-13413797 | MS.gene53263:intron | 30.0% | |
| AAATACCACACCAAAGAAAA+AGG | + | chr4.3:13414123-13414142 | None:intergenic | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr4.3:13413882-13413901 | None:intergenic | 30.0% | |
| ACTACAAATGTTCTTAAGCA+AGG | - | chr4.3:13414143-13414162 | MS.gene53263:intron | 30.0% | |
| AGAGACATGAAAACCTAATT+AGG | - | chr4.3:13414442-13414461 | MS.gene53263:intron | 30.0% | |
| ATGAAAATATTAGAGAGTCG+AGG | - | chr4.3:13412863-13412882 | MS.gene53263:intron | 30.0% | |
| ATTGATCAAAGTGATTATGG+TGG | - | chr4.3:13412651-13412670 | MS.gene53263:intron | 30.0% | |
| ATTTCACTGAATAGACAAAC+TGG | + | chr4.3:13413219-13413238 | None:intergenic | 30.0% | |
| CACAACCAAACAAATTGAAA+AGG | + | chr4.3:13415233-13415252 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | + | chr4.3:13413758-13413777 | None:intergenic | 30.0% | |
| CTATAGATATATCATCGCTA+AGG | + | chr4.3:13414763-13414782 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | - | chr4.3:13414351-13414370 | MS.gene53263:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr4.3:13413777-13413796 | MS.gene53263:intron | 30.0% | |
| GGAAGATATAGGAAATAAGA+AGG | + | chr4.3:13414722-13414741 | None:intergenic | 30.0% | |
| GTTGTTGCTAATACAATTTC+AGG | - | chr4.3:13413132-13413151 | MS.gene53263:CDS | 30.0% | |
| TGTTGTACTTACTGATATTG+TGG | - | chr4.3:13413487-13413506 | MS.gene53263:intron | 30.0% | |
| TTAACAACACTGGAAGATAT+AGG | + | chr4.3:13414733-13414752 | None:intergenic | 30.0% | |
| TTGCAGATTACAGAAAATAG+TGG | + | chr4.3:13414915-13414934 | None:intergenic | 30.0% | |
| TTTAGGCTGAACAACAATAT+GGG | + | chr4.3:13415067-13415086 | None:intergenic | 30.0% | |
| ! | AAATTTTTATGGGGTTTCAC+TGG | - | chr4.3:13413529-13413548 | MS.gene53263:intron | 30.0% |
| ! | AGGAAAATGTCCTTTTTCTT+TGG | - | chr4.3:13414110-13414129 | MS.gene53263:intron | 30.0% |
| ! | AGTAAAATGGATTTCGGTTT+CGG | - | chr4.3:13412561-13412580 | MS.gene53263:intron | 30.0% |
| ! | TAATTTTACTATGCTCTGCT+TGG | - | chr4.3:13412510-13412529 | MS.gene53263:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr4.3:13413847-13413866 | None:intergenic | 30.0% |
| !! | TTATTTCTATCGGTATGTGT+CGG | - | chr4.3:13415182-13415201 | MS.gene53263:intron | 30.0% |
| !!! | AGTATTGAAAAGGCTAGTTT+TGG | + | chr4.3:13415266-13415285 | None:intergenic | 30.0% |
| AAATATATCAATGTGAGGGC+AGG | - | chr4.3:13414356-13414375 | MS.gene53263:intron | 35.0% | |
| AACTTCAATCTACTGTTGGA+AGG | - | chr4.3:13415141-13415160 | MS.gene53263:intron | 35.0% | |
| AGACTTTACCTTCTTCTCTT+TGG | - | chr4.3:13414590-13414609 | MS.gene53263:intron | 35.0% | |
| AGTATGGAGAGTAGATCAAA+TGG | - | chr4.3:13412965-13412984 | MS.gene53263:intron | 35.0% | |
| AGTGATTATGGTGGTTGAAA+TGG | - | chr4.3:13412660-13412679 | MS.gene53263:intron | 35.0% | |
| ATGGGTACTTAAGTAAGAGT+TGG | - | chr4.3:13413624-13413643 | MS.gene53263:intron | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr4.3:13413850-13413869 | MS.gene53263:intron | 35.0% | |
| CTCCATACTACAGAATCTAT+AGG | + | chr4.3:13412954-13412973 | None:intergenic | 35.0% | |
| CTCTTATTACTTGCCTCTTT+AGG | - | chr4.3:13414543-13414562 | MS.gene53263:intron | 35.0% | |
| CTGACAAAAGATTTGGGTAA+AGG | + | chr4.3:13415335-13415354 | None:intergenic | 35.0% | |
| CTTTAGGCTGAACAACAATA+TGG | + | chr4.3:13415068-13415087 | None:intergenic | 35.0% | |
| GAAAATAGACTTAGGTGGTT+TGG | - | chr4.3:13412912-13412931 | MS.gene53263:intron | 35.0% | |
| GACCTATAGATTCTGTAGTA+TGG | - | chr4.3:13412949-13412968 | MS.gene53263:intron | 35.0% | |
| GATCTGTCTAGAAATTCATC+AGG | + | chr4.3:13413593-13413612 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | - | chr4.3:13415382-13415401 | MS.gene53263:CDS | 35.0% | |
| GTAAAGCAAATGGCCTAATT+AGG | + | chr4.3:13414458-13414477 | None:intergenic | 35.0% | |
| GTAAGGTGAACATTCTTATG+TGG | - | chr4.3:13414690-13414709 | MS.gene53263:intron | 35.0% | |
| GTCCTCAAAATTGTGAGTAT+TGG | + | chr4.3:13413197-13413216 | None:intergenic | 35.0% | |
| GTGGTAAGACTATATGAGAT+AGG | - | chr4.3:13412833-13412852 | MS.gene53263:intron | 35.0% | |
| TATTATCTAAGAGACAGGAG+AGG | + | chr4.3:13414392-13414411 | None:intergenic | 35.0% | |
| TCGTCATATAGTTGCTATAG+TGG | - | chr4.3:13414846-13414865 | MS.gene53263:intron | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | - | chr4.3:13414115-13414134 | MS.gene53263:intron | 35.0% |
| ! | ACTTCTGACTTATTTCTCTG+TGG | - | chr4.3:13415283-13415302 | MS.gene53263:intron | 35.0% |
| ! | AGGTTAATGTCTGAAACACA+AGG | - | chr4.3:13413363-13413382 | MS.gene53263:intron | 35.0% |
| ! | ATCTCCTAAGACTGATTTCA+AGG | + | chr4.3:13415007-13415026 | None:intergenic | 35.0% |
| ! | CAAATGTGAGGACTTTGTTT+GGG | - | chr4.3:13415405-13415424 | MS.gene53263:CDS | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | - | chr4.3:13415095-13415114 | MS.gene53263:intron | 35.0% |
| ! | GACCAATACTCACAATTTTG+AGG | - | chr4.3:13413192-13413211 | MS.gene53263:CDS | 35.0% |
| ! | GGTTAATGTCTGAAACACAA+GGG | - | chr4.3:13413364-13413383 | MS.gene53263:intron | 35.0% |
| ! | GTAAGACTGGCAATTTTGTA+TGG | - | chr4.3:13412733-13412752 | MS.gene53263:CDS | 35.0% |
| ! | TGAAGATGATGTCATTGGTT+CGG | - | chr4.3:13412327-13412346 | MS.gene53263:CDS | 35.0% |
| ! | TTTAAAAACTCAGCTTGCTC+AGG | + | chr4.3:13415460-13415479 | None:intergenic | 35.0% |
| ! | TTTGTATGGAACAGAGTGTT+GGG | - | chr4.3:13412747-13412766 | MS.gene53263:CDS | 35.0% |
| ! | TTTTGTATGGAACAGAGTGT+TGG | - | chr4.3:13412746-13412765 | MS.gene53263:CDS | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+AGG | - | chr4.3:13412904-13412923 | MS.gene53263:intron | 35.0% |
| !! | CATAGTTGGTAATTGTGCTA+TGG | - | chr4.3:13413403-13413422 | MS.gene53263:intron | 35.0% |
| !! | GTAGGCCTTTTCAATTTGTT+TGG | - | chr4.3:13415225-13415244 | MS.gene53263:intron | 35.0% |
| !! | TCAATTTTGGGAATAACCAC+AGG | + | chr4.3:13412425-13412444 | None:intergenic | 35.0% |
| !! | TTCTCTTTGGTGATGCTTAT+GGG | - | chr4.3:13414603-13414622 | MS.gene53263:intron | 35.0% |
| !!! | CGTTGATTTTATTCTCGTGT+TGG | + | chr4.3:13412783-13412802 | None:intergenic | 35.0% |
| AAATCAACGTAGCAGAGATG+AGG | - | chr4.3:13412794-13412813 | MS.gene53263:CDS | 40.0% | |
| AAGAATGTTCACCTTACGCA+TGG | + | chr4.3:13414687-13414706 | None:intergenic | 40.0% | |
| AAGACTGAACATGCACTAAC+AGG | + | chr4.3:13414295-13414314 | None:intergenic | 40.0% | |
| AAGCATCACCAAAGAGAAGA+AGG | + | chr4.3:13414601-13414620 | None:intergenic | 40.0% | |
| ACCTATAGCAGAAAAGATGG+TGG | - | chr4.3:13412890-13412909 | MS.gene53263:intron | 40.0% | |
| ACTGATATTGTGGCTGTTCT+TGG | - | chr4.3:13413497-13413516 | MS.gene53263:intron | 40.0% | |
| ACTTGAAGGGGGAATTCTAT+CGG | - | chr4.3:13412704-13412723 | MS.gene53263:intron | 40.0% | |
| AGCACCTATAGCAGAAAAGA+TGG | - | chr4.3:13412887-13412906 | MS.gene53263:intron | 40.0% | |
| ATATTGTCCTCGTCTTCCTT+TGG | - | chr4.3:13414044-13414063 | MS.gene53263:intron | 40.0% | |
| ATGGAGAGTAGATCAAATGG+AGG | - | chr4.3:13412968-13412987 | MS.gene53263:intron | 40.0% | |
| CCTATAGCACTATTGCATAG+CGG | - | chr4.3:13414877-13414896 | MS.gene53263:intron | 40.0% | |
| CCTCTTTAGGTCACTACAAA+GGG | - | chr4.3:13414556-13414575 | MS.gene53263:intron | 40.0% | |
| CTTCAGAGATAATTGCTGTG+TGG | - | chr4.3:13414511-13414530 | MS.gene53263:intron | 40.0% | |
| GCAAATGTGAGGACTTTGTT+TGG | - | chr4.3:13415404-13415423 | MS.gene53263:CDS | 40.0% | |
| GCGTAACTTCAATCTACTGT+TGG | - | chr4.3:13415137-13415156 | MS.gene53263:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | - | chr4.3:13415426-13415445 | MS.gene53263:CDS | 40.0% | |
| TAAGTACCCATACCTTGCAT+CGG | + | chr4.3:13413615-13413634 | None:intergenic | 40.0% | |
| TCTGCCTTGAAATCAGTCTT+AGG | - | chr4.3:13415000-13415019 | MS.gene53263:intron | 40.0% | |
| TGAACAACAATATGGGCCAT+CGG | + | chr4.3:13415060-13415079 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGACTTAGG+TGG | - | chr4.3:13412907-13412926 | MS.gene53263:intron | 40.0% | |
| ! | AGGCTGCTATTTAACAACAC+TGG | + | chr4.3:13414743-13414762 | None:intergenic | 40.0% |
| ! | TCCACCATCTTTTCTGCTAT+AGG | + | chr4.3:13412894-13412913 | None:intergenic | 40.0% |
| !! | CTTCTCTTTGGTGATGCTTA+TGG | - | chr4.3:13414602-13414621 | MS.gene53263:intron | 40.0% |
| !! | TCTCTTTGGTGATGCTTATG+GGG | - | chr4.3:13414604-13414623 | MS.gene53263:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | + | chr4.3:13414644-13414663 | None:intergenic | 40.0% |
| ACAGATCCGATGCAAGGTAT+GGG | - | chr4.3:13413606-13413625 | MS.gene53263:intron | 45.0% | |
| ATCAGAGGATACCATGCGTA+AGG | - | chr4.3:13414673-13414692 | MS.gene53263:intron | 45.0% | |
| ATGACATTTGCTCGCTCCAA+AGG | + | chr4.3:13414063-13414082 | None:intergenic | 45.0% | |
| CAATCTCTCAAACAGCACAG+AGG | + | chr4.3:13412402-13412421 | None:intergenic | 45.0% | |
| CCCTTTGTAGTGACCTAAAG+AGG | + | chr4.3:13414559-13414578 | None:intergenic | 45.0% | |
| CCGCTATGCAATAGTGCTAT+AGG | + | chr4.3:13414880-13414899 | None:intergenic | 45.0% | |
| CTATCGGACAGTTGTAAGAC+TGG | - | chr4.3:13412720-13412739 | MS.gene53263:CDS | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | + | chr4.3:13415084-13415103 | None:intergenic | 45.0% | |
| GCCTCTTTAGGTCACTACAA+AGG | - | chr4.3:13414555-13414574 | MS.gene53263:intron | 45.0% | |
| GTTCGACATTGGCAAATGTG+AGG | - | chr4.3:13415393-13415412 | MS.gene53263:CDS | 45.0% | |
| GTTGAAATGGAGATGAGGCT+CGG | - | chr4.3:13412673-13412692 | MS.gene53263:intron | 45.0% | |
| TATCAATGTGAGGGCAGGAT+AGG | - | chr4.3:13414361-13414380 | MS.gene53263:intron | 45.0% | |
| TCTAAGAGACAGGAGAGGAT+TGG | + | chr4.3:13414387-13414406 | None:intergenic | 45.0% | |
| TGGTGGTTGAAATGGAGATG+AGG | - | chr4.3:13412668-13412687 | MS.gene53263:intron | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr4.3:13413783-13413802 | MS.gene53263:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | - | chr4.3:13413600-13413619 | MS.gene53263:intron | 45.0% | |
| TTGAAATGGAGATGAGGCTC+GGG | - | chr4.3:13412674-13412693 | MS.gene53263:intron | 45.0% | |
| ! | AAGCCTTTTCCAACTAGGTG+GGG | + | chr4.3:13413108-13413127 | None:intergenic | 45.0% |
| ! | CAACCAAGCCTTTTCCAACT+AGG | + | chr4.3:13413113-13413132 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCAACTAGGT+GGG | + | chr4.3:13413109-13413128 | None:intergenic | 45.0% |
| ! | CTCGGGTGACTTAACTTGAA+GGG | - | chr4.3:13412691-13412710 | MS.gene53263:intron | 45.0% |
| ! | GGACTTTGTTTGGGTGACTA+AGG | - | chr4.3:13415414-13415433 | MS.gene53263:CDS | 45.0% |
| ! | TCGGGTGACTTAACTTGAAG+GGG | - | chr4.3:13412692-13412711 | MS.gene53263:intron | 45.0% |
| ! | TTTATGGGGTTTCACTGGCT+AGG | - | chr4.3:13413534-13413553 | MS.gene53263:intron | 45.0% |
| ! | TTTCACTGGCTAGGTTTCGA+TGG | - | chr4.3:13413543-13413562 | MS.gene53263:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | - | chr4.3:13415041-13415060 | MS.gene53263:intron | 45.0% |
| !! | CAGTACCAGCTCTGAGAAAA+TGG | - | chr4.3:13412373-13412392 | MS.gene53263:CDS | 45.0% |
| !! | GAGGGCATTTAGGAAAGACT+TGG | - | chr4.3:13413012-13413031 | MS.gene53263:intron | 45.0% |
| AATCCTCGCCTCATCAAGAG+TGG | + | chr4.3:13412353-13412372 | None:intergenic | 50.0% | |
| AGTCAGATCGCTAGTGGTAG+AGG | - | chr4.3:13412993-13413012 | MS.gene53263:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr4.3:13412806-13412825 | MS.gene53263:CDS | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | - | chr4.3:13415078-13415097 | MS.gene53263:intron | 50.0% | |
| CCACCTAGTTGGAAAAGGCT+TGG | - | chr4.3:13413107-13413126 | MS.gene53263:intron | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr4.3:13413796-13413815 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | - | chr4.3:13413605-13413624 | MS.gene53263:intron | 50.0% | |
| GAGGATAGTCAGATCGCTAG+TGG | - | chr4.3:13412987-13413006 | MS.gene53263:intron | 50.0% | |
| GCTGTTTGAGAGATTGCCTG+TGG | - | chr4.3:13412406-13412425 | MS.gene53263:CDS | 50.0% | |
| GTCAGATCGCTAGTGGTAGA+GGG | - | chr4.3:13412994-13413013 | MS.gene53263:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr4.3:13413837-13413856 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCAACTAGG+TGG | + | chr4.3:13413110-13413129 | None:intergenic | 50.0% |
| ! | CGGGTGACTTAACTTGAAGG+GGG | - | chr4.3:13412693-13412712 | MS.gene53263:intron | 50.0% |
| ! | CTTTTCCAACTAGGTGGGGT+CGG | + | chr4.3:13413104-13413123 | None:intergenic | 50.0% |
| ! | GCTCGGGTGACTTAACTTGA+AGG | - | chr4.3:13412690-13412709 | MS.gene53263:intron | 50.0% |
| ! | GGCAACCATTTTCTCAGAGC+TGG | + | chr4.3:13412381-13412400 | None:intergenic | 50.0% |
| !! | GCTAGTGGTAGAGGGCATTT+AGG | - | chr4.3:13413002-13413021 | MS.gene53263:intron | 50.0% |
| !! | GTATGGAACAGAGTGTTGGG+CGG | - | chr4.3:13412750-13412769 | MS.gene53263:CDS | 50.0% |
| CGACCCCACCTAGTTGGAAA+AGG | - | chr4.3:13413102-13413121 | MS.gene53263:intron | 55.0% | |
| CTCCAAGTGGAAAGCCTGTG+TGG | - | chr4.3:13414627-13414646 | MS.gene53263:intron | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | - | chr4.3:13414614-13414633 | MS.gene53263:intron | 55.0% | |
| TGCCACACAGGCTTTCCACT+TGG | + | chr4.3:13414632-13414651 | None:intergenic | 55.0% | |
| ! | AGGATGTTGCGTTGGTCGTG+TGG | - | chr4.3:13412814-13412833 | MS.gene53263:CDS | 55.0% |
| ! | CACTGGCTAGGTTTCGATGG+CGG | - | chr4.3:13413546-13413565 | MS.gene53263:intron | 55.0% |
| ! | TGGTTCGGCCACTCTTGATG+AGG | - | chr4.3:13412342-13412361 | MS.gene53263:CDS | 55.0% |
| ACTAGGTGGGGTCGGCTACA+TGG | + | chr4.3:13413096-13413115 | None:intergenic | 60.0% | |
| GCTCGCTCCAAAGGAAGACG+AGG | + | chr4.3:13414054-13414073 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+TGG | - | chr4.3:13413096-13413115 | MS.gene53263:intron | 60.0% | |
| CGGCCACTCTTGATGAGGCG+AGG | - | chr4.3:13412347-13412366 | MS.gene53263:CDS | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr4.3:13413831-13413850 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13412326 | 13415498 | 13412326 | ID=MS.gene53263 |
| chr4.3 | mRNA | 13412326 | 13415498 | 13412326 | ID=MS.gene53263.t1;Parent=MS.gene53263 |
| chr4.3 | exon | 13415350 | 13415498 | 13415350 | ID=MS.gene53263.t1.exon1;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13415350 | 13415498 | 13415350 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| chr4.3 | exon | 13414203 | 13414268 | 13414203 | ID=MS.gene53263.t1.exon2;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13414203 | 13414268 | 13414203 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| chr4.3 | exon | 13413953 | 13414027 | 13413953 | ID=MS.gene53263.t1.exon3;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13413953 | 13414027 | 13413953 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| chr4.3 | exon | 13413130 | 13413259 | 13413130 | ID=MS.gene53263.t1.exon4;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13413130 | 13413259 | 13413130 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| chr4.3 | exon | 13412708 | 13412833 | 13412708 | ID=MS.gene53263.t1.exon5;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13412708 | 13412833 | 13412708 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| chr4.3 | exon | 13412326 | 13412469 | 13412326 | ID=MS.gene53263.t1.exon6;Parent=MS.gene53263.t1 |
| chr4.3 | CDS | 13412326 | 13412469 | 13412326 | ID=cds.MS.gene53263.t1;Parent=MS.gene53263.t1 |
| Gene Sequence |
| Protein sequence |
