Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54433.t1 | XP_013447807.1 | 97.4 | 270 | 7 | 0 | 2 | 271 | 77 | 346 | 4.00E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54433.t1 | Q9SLN8 | 67.2 | 268 | 87 | 1 | 4 | 271 | 77 | 343 | 1.1e-102 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54433.t1 | I3SE71 | 97.4 | 270 | 7 | 0 | 2 | 271 | 77 | 346 | 2.9e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39312 | MS.gene54433 | PPI |
| MS.gene39326 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene39313 | PPI |
| MS.gene020239 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene022736 | PPI |
| MS.gene54433 | MS.gene020227 | PPI |
| MS.gene39314 | MS.gene54433 | PPI |
| MS.gene39315 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene022735 | PPI |
| MS.gene022721 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene45375 | PPI |
| MS.gene54433 | MS.gene39314 | PPI |
| MS.gene020077 | MS.gene54433 | PPI |
| MS.gene020033 | MS.gene54433 | PPI |
| MS.gene020225 | MS.gene54433 | PPI |
| MS.gene39327 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene022738 | PPI |
| MS.gene022722 | MS.gene54433 | PPI |
| MS.gene020226 | MS.gene54433 | PPI |
| MS.gene020228 | MS.gene54433 | PPI |
| MS.gene020076 | MS.gene54433 | PPI |
| MS.gene54433 | MS.gene022721 | PPI |
| MS.gene022737 | MS.gene54433 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54433.t1 | MTR_7g406860 | 97.407 | 270 | 7 | 0 | 2 | 271 | 77 | 346 | 0.0 | 538 |
| MS.gene54433.t1 | MTR_8g009820 | 66.791 | 268 | 88 | 1 | 4 | 271 | 136 | 402 | 8.75e-128 | 369 |
| MS.gene54433.t1 | MTR_8g010030 | 66.045 | 268 | 90 | 1 | 4 | 271 | 78 | 344 | 4.01e-127 | 365 |
| MS.gene54433.t1 | MTR_8g010020 | 65.299 | 268 | 92 | 1 | 4 | 271 | 46 | 312 | 6.51e-126 | 360 |
| MS.gene54433.t1 | MTR_8g009830 | 64.925 | 268 | 92 | 2 | 4 | 271 | 77 | 342 | 4.69e-125 | 359 |
| MS.gene54433.t1 | MTR_8g009980 | 64.312 | 269 | 95 | 1 | 3 | 271 | 77 | 344 | 1.28e-124 | 358 |
| MS.gene54433.t1 | MTR_8g009840 | 64.122 | 262 | 92 | 2 | 4 | 265 | 77 | 336 | 8.17e-120 | 353 |
| MS.gene54433.t1 | MTR_4g082970 | 61.194 | 268 | 103 | 1 | 4 | 271 | 84 | 350 | 2.87e-117 | 340 |
| MS.gene54433.t1 | MTR_8g010000 | 54.104 | 268 | 97 | 2 | 4 | 271 | 78 | 319 | 8.64e-98 | 290 |
| MS.gene54433.t1 | MTR_0011s0280 | 49.630 | 270 | 135 | 1 | 2 | 271 | 78 | 346 | 6.17e-97 | 288 |
| MS.gene54433.t1 | MTR_2g088190 | 42.222 | 270 | 153 | 2 | 2 | 268 | 78 | 347 | 5.74e-72 | 224 |
| MS.gene54433.t1 | MTR_2g088200 | 42.264 | 265 | 150 | 2 | 7 | 268 | 84 | 348 | 1.13e-67 | 214 |
| MS.gene54433.t1 | MTR_2g088220 | 41.481 | 270 | 155 | 2 | 2 | 268 | 79 | 348 | 2.88e-67 | 213 |
| MS.gene54433.t1 | MTR_8g007325 | 69.231 | 143 | 43 | 1 | 4 | 146 | 77 | 218 | 9.19e-64 | 199 |
| MS.gene54433.t1 | MTR_5g095030 | 53.125 | 128 | 60 | 0 | 142 | 269 | 9 | 136 | 3.15e-44 | 146 |
| MS.gene54433.t1 | MTR_4g086410 | 34.959 | 246 | 146 | 6 | 29 | 268 | 385 | 622 | 3.83e-29 | 116 |
| MS.gene54433.t1 | MTR_4g086400 | 34.553 | 246 | 147 | 6 | 29 | 268 | 245 | 482 | 7.11e-29 | 114 |
| MS.gene54433.t1 | MTR_4g086400 | 34.553 | 246 | 147 | 6 | 29 | 268 | 385 | 622 | 1.23e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54433.t1 | AT1G65560 | 69.708 | 274 | 80 | 2 | 1 | 271 | 1 | 274 | 2.06e-140 | 396 |
| MS.gene54433.t1 | AT1G65560 | 70.111 | 271 | 78 | 2 | 4 | 271 | 80 | 350 | 4.93e-138 | 393 |
| MS.gene54433.t1 | AT1G26320 | 66.667 | 267 | 87 | 2 | 6 | 271 | 86 | 351 | 1.41e-126 | 364 |
| MS.gene54433.t1 | AT5G16990 | 65.314 | 271 | 92 | 2 | 2 | 271 | 74 | 343 | 2.28e-126 | 363 |
| MS.gene54433.t1 | AT5G16970 | 65.056 | 269 | 92 | 2 | 4 | 271 | 78 | 345 | 1.08e-125 | 361 |
| MS.gene54433.t1 | AT3G03080 | 65.789 | 266 | 90 | 1 | 6 | 271 | 86 | 350 | 4.40e-124 | 357 |
| MS.gene54433.t1 | AT5G37980 | 62.731 | 271 | 99 | 2 | 2 | 271 | 84 | 353 | 1.05e-123 | 357 |
| MS.gene54433.t1 | AT5G17000 | 64.576 | 271 | 94 | 2 | 2 | 271 | 76 | 345 | 4.12e-122 | 352 |
| MS.gene54433.t1 | AT1G26320 | 65.169 | 267 | 86 | 3 | 6 | 271 | 86 | 346 | 7.36e-122 | 352 |
| MS.gene54433.t1 | AT5G37940 | 60.886 | 271 | 104 | 2 | 2 | 271 | 84 | 353 | 2.90e-120 | 348 |
| MS.gene54433.t1 | AT5G16960 | 63.433 | 268 | 98 | 0 | 2 | 269 | 77 | 344 | 1.29e-118 | 343 |
| MS.gene54433.t1 | AT5G16960 | 63.433 | 268 | 98 | 0 | 2 | 269 | 77 | 344 | 1.29e-118 | 343 |
| MS.gene54433.t1 | AT5G38000 | 59.851 | 269 | 106 | 2 | 2 | 269 | 84 | 351 | 3.99e-117 | 340 |
| MS.gene54433.t1 | AT3G59845 | 61.194 | 268 | 103 | 1 | 2 | 269 | 80 | 346 | 2.16e-115 | 335 |
| MS.gene54433.t1 | AT5G38000 | 59.375 | 256 | 102 | 2 | 2 | 256 | 84 | 338 | 3.46e-110 | 322 |
| MS.gene54433.t1 | AT5G16980 | 67.100 | 231 | 75 | 1 | 41 | 271 | 10 | 239 | 2.18e-109 | 316 |
| MS.gene54433.t1 | AT5G16980 | 67.100 | 231 | 75 | 1 | 41 | 271 | 10 | 239 | 2.18e-109 | 316 |
| MS.gene54433.t1 | AT5G16980 | 67.100 | 231 | 75 | 1 | 41 | 271 | 76 | 305 | 6.06e-109 | 317 |
| MS.gene54433.t1 | AT3G59845 | 61.885 | 244 | 92 | 1 | 26 | 269 | 2 | 244 | 4.20e-106 | 308 |
| MS.gene54433.t1 | AT5G38000 | 54.647 | 269 | 101 | 3 | 2 | 269 | 84 | 332 | 9.05e-100 | 295 |
| MS.gene54433.t1 | AT5G17000 | 66.667 | 147 | 47 | 2 | 2 | 147 | 76 | 221 | 1.99e-63 | 199 |
| MS.gene54433.t1 | AT1G49670 | 32.353 | 272 | 168 | 7 | 5 | 268 | 355 | 618 | 4.25e-29 | 116 |
| MS.gene54433.t1 | AT1G49670 | 30.450 | 289 | 174 | 7 | 5 | 268 | 355 | 641 | 4.32e-27 | 110 |
| MS.gene54433.t1 | AT5G37960 | 40.964 | 83 | 49 | 0 | 186 | 268 | 21 | 103 | 4.04e-14 | 67.4 |
Find 55 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCTGTTCCAAGAATTT+TGG | 0.074164 | 7.3:-91254466 | None:intergenic |
| TCCTTCCATCTTGGTCTTCT+AGG | 0.131701 | 7.3:+91252718 | MS.gene54433:CDS |
| TAATCACCGGCCTTGAAATT+TGG | 0.149936 | 7.3:-91252604 | None:intergenic |
| GATTACATTTCGGGGTTTAC+TGG | 0.217196 | 7.3:+91252622 | MS.gene54433:CDS |
| GAACTTGTACCCAAAATTCT+TGG | 0.233497 | 7.3:+91254456 | MS.gene54433:CDS |
| CAAGGCCGGTGATTACATTT+CGG | 0.268678 | 7.3:+91252612 | MS.gene54433:CDS |
| ACTTGGATGCAGCTCTTAAA+AGG | 0.292712 | 7.3:+91253998 | MS.gene54433:CDS |
| GATAAATTGTGAATCCCTTT+AGG | 0.298286 | 7.3:-91254379 | None:intergenic |
| TGCTATGTTGTTGGAAGTGC+TGG | 0.328797 | 7.3:+91252987 | MS.gene54433:CDS |
| ATTCCCCTTTCCTTCCATCT+TGG | 0.335942 | 7.3:+91252709 | MS.gene54433:CDS |
| AAGGCCGGTGATTACATTTC+GGG | 0.337567 | 7.3:+91252613 | MS.gene54433:CDS |
| AAATAAATGTCAAGGCCTTC+AGG | 0.351536 | 7.3:-91254253 | None:intergenic |
| TGCCATGAATCTTCATGTTA+AGG | 0.372540 | 7.3:-91254312 | None:intergenic |
| CTCCTTAACATGAAGATTCA+TGG | 0.381805 | 7.3:+91254310 | MS.gene54433:CDS |
| ATGAAGGTGCTTGAAGGATT+TGG | 0.401139 | 7.3:+91252553 | MS.gene54433:CDS |
| ACATTTCGGGGTTTACTGGC+TGG | 0.403093 | 7.3:+91252626 | MS.gene54433:CDS |
| GTACCCAAAATTCTTGGAAC+AGG | 0.409285 | 7.3:+91254462 | MS.gene54433:CDS |
| CCGGGATTTACAGCGTATGC+TGG | 0.409716 | 7.3:+91252861 | MS.gene54433:CDS |
| AAAGCATTTCTGATCCTAAA+GGG | 0.417672 | 7.3:+91254365 | MS.gene54433:CDS |
| CAAAGCATTTCTGATCCTAA+AGG | 0.446345 | 7.3:+91254364 | MS.gene54433:CDS |
| CATGGCAGAATTGCAGTTTG+TGG | 0.452504 | 7.3:+91254328 | MS.gene54433:CDS |
| CTATGAATGAAGGTGCTTGA+AGG | 0.456189 | 7.3:+91252547 | None:intergenic |
| TTATAAGCGCATTAGAATGC+AGG | 0.461660 | 7.3:+91254411 | MS.gene54433:CDS |
| TGAAGACATGAATGAAGGCT+TGG | 0.469697 | 7.3:+91254522 | MS.gene54433:CDS |
| GGTGTTGTGGGTCAACTTGT+TGG | 0.471471 | 7.3:+91252942 | MS.gene54433:CDS |
| ATCTGATAATCCAAATTTCA+AGG | 0.478005 | 7.3:+91252594 | MS.gene54433:CDS |
| ATCAGCAGCATCGGGTGTTG+TGG | 0.479399 | 7.3:+91252929 | MS.gene54433:CDS |
| GAACTTCTAAAGAATAAACT+TGG | 0.481093 | 7.3:+91253940 | MS.gene54433:CDS |
| TTGCATGGTTGCTATGTTGT+TGG | 0.484821 | 7.3:+91252978 | MS.gene54433:CDS |
| GAAAGGGGAATGTGATCATC+CGG | 0.494018 | 7.3:-91252697 | None:intergenic |
| ATGGCAGAATTGCAGTTTGT+GGG | 0.508223 | 7.3:+91254329 | MS.gene54433:CDS |
| CTATAAGGAAGAATTAGACT+TGG | 0.510802 | 7.3:+91253981 | MS.gene54433:CDS |
| CATTTCGGGGTTTACTGGCT+GGG | 0.512700 | 7.3:+91252627 | MS.gene54433:CDS |
| AAGACCAAGATGGAAGGAAA+GGG | 0.513146 | 7.3:-91252713 | None:intergenic |
| AAAAGTCCAACAAAAGCAGC+TGG | 0.517496 | 7.3:-91254553 | None:intergenic |
| CGGGATTTACAGCGTATGCT+GGG | 0.517858 | 7.3:+91252862 | MS.gene54433:CDS |
| AAGTGCTGGCTCAAAAGAAA+AGG | 0.532764 | 7.3:+91253001 | MS.gene54433:CDS |
| AGGCCGGTGATTACATTTCG+GGG | 0.548894 | 7.3:+91252614 | MS.gene54433:CDS |
| TCAGCAGCATCGGGTGTTGT+GGG | 0.551262 | 7.3:+91252930 | MS.gene54433:CDS |
| CCAGCATACGCTGTAAATCC+CGG | 0.551567 | 7.3:-91252861 | None:intergenic |
| GGTCAACTTGCTAAGTTGCA+TGG | 0.556467 | 7.3:+91252963 | MS.gene54433:CDS |
| TATAAGCGCATTAGAATGCA+GGG | 0.557223 | 7.3:+91254412 | MS.gene54433:CDS |
| GATAATCCAAATTTCAAGGC+CGG | 0.560730 | 7.3:+91252598 | MS.gene54433:CDS |
| GAAGACCAAGATGGAAGGAA+AGG | 0.562674 | 7.3:-91252714 | None:intergenic |
| CGTTATCAAAATAAATGTCA+AGG | 0.568387 | 7.3:-91254261 | None:intergenic |
| GTTTCAAGTTTCTACAAACA+AGG | 0.573760 | 7.3:+91254484 | MS.gene54433:CDS |
| CATGAATCTTCATGTTAAGG+AGG | 0.584076 | 7.3:-91254309 | None:intergenic |
| AAACCCCGAAATGTAATCAC+CGG | 0.592715 | 7.3:-91252617 | None:intergenic |
| ACCTAGAAGACCAAGATGGA+AGG | 0.604666 | 7.3:-91252719 | None:intergenic |
| TTCGGGGTTTACTGGCTGGG+AGG | 0.611452 | 7.3:+91252630 | MS.gene54433:CDS |
| GCTTACCGACGTTCTTGCCG+AGG | 0.623068 | 7.3:-91254576 | None:intergenic |
| ATGAATCTTCATGTTAAGGA+GGG | 0.628175 | 7.3:-91254308 | None:intergenic |
| AGGTACCTAGAAGACCAAGA+TGG | 0.642818 | 7.3:-91252723 | None:intergenic |
| AGACCAAGATGGAAGGAAAG+GGG | 0.653687 | 7.3:-91252712 | None:intergenic |
| AATGCGCTTATAAATGAGAG+AGG | 0.659871 | 7.3:-91254401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGTTTAGATAAAAGA+AGG | - | chr7.3:91254208-91254227 | None:intergenic | 15.0% |
| !! | AAAAATAGTAGAAAATAACA+TGG | - | chr7.3:91253666-91253685 | None:intergenic | 15.0% |
| !!! | GGATATTATAAAGTTTTTAA+TGG | + | chr7.3:91254037-91254056 | MS.gene54433:intron | 15.0% |
| !! | TAAGATAAGCTAAATAAACT+GGG | - | chr7.3:91253588-91253607 | None:intergenic | 20.0% |
| !! | TAATGAATACAAAATCATGA+AGG | + | chr7.3:91253248-91253267 | MS.gene54433:intron | 20.0% |
| !! | TACTTCTACTATGTTATTAA+AGG | - | chr7.3:91253453-91253472 | None:intergenic | 20.0% |
| !! | TTAATAACATAGTAGAAGTA+AGG | + | chr7.3:91253453-91253472 | MS.gene54433:intron | 20.0% |
| !!! | ATTAATCCGTTTTAATGTAT+AGG | + | chr7.3:91252834-91252853 | MS.gene54433:intron | 20.0% |
| !!! | CATTAAAACGGATTAATTAT+TGG | - | chr7.3:91252831-91252850 | None:intergenic | 20.0% |
| !!! | TTTATCTAAACTTTTTTCGT+TGG | + | chr7.3:91254211-91254230 | MS.gene54433:intron | 20.0% |
| ! | AAGTAATTAGCATTCTAGAT+AGG | - | chr7.3:91252746-91252765 | None:intergenic | 25.0% |
| ! | ATCTGATAATCCAAATTTCA+AGG | + | chr7.3:91252594-91252613 | MS.gene54433:CDS | 25.0% |
| ! | ATGTATTCATAAGCTATCTA+AGG | - | chr7.3:91253698-91253717 | None:intergenic | 25.0% |
| ! | ATTTAAATTTCCTGAGACAA+TGG | - | chr7.3:91254067-91254086 | None:intergenic | 25.0% |
| ! | ATTTAATTCTGGATTTCATC+AGG | - | chr7.3:91253348-91253367 | None:intergenic | 25.0% |
| ! | CGTTATCAAAATAAATGTCA+AGG | - | chr7.3:91254264-91254283 | None:intergenic | 25.0% |
| ! | GTAAGATAAGCTAAATAAAC+TGG | - | chr7.3:91253589-91253608 | None:intergenic | 25.0% |
| ! | TCAACCTAATGTAATAGATT+TGG | - | chr7.3:91253922-91253941 | None:intergenic | 25.0% |
| ! | TGTTCATAAGCTATAAGAAA+GGG | - | chr7.3:91253524-91253543 | None:intergenic | 25.0% |
| ! | TTGTTCATAAGCTATAAGAA+AGG | - | chr7.3:91253525-91253544 | None:intergenic | 25.0% |
| !! | AGAAAAAACCATCTGAAATT+AGG | + | chr7.3:91253293-91253312 | MS.gene54433:intron | 25.0% |
| !! | GAACTTCTAAAGAATAAACT+TGG | + | chr7.3:91253940-91253959 | MS.gene54433:CDS | 25.0% |
| !! | TAGTTACTAAGTCTTACTTT+TGG | - | chr7.3:91253060-91253079 | None:intergenic | 25.0% |
| !! | TCCTTGATCAATACATTTTT+CGG | - | chr7.3:91253220-91253239 | None:intergenic | 25.0% |
| !!! | AAAACATATTCTCCACTTTT+TGG | - | chr7.3:91252906-91252925 | None:intergenic | 25.0% |
| !!! | AAACATATTCTCCACTTTTT+GGG | - | chr7.3:91252905-91252924 | None:intergenic | 25.0% |
| !!! | GACATTTATTTTGATAACGT+GGG | + | chr7.3:91254265-91254284 | MS.gene54433:CDS | 25.0% |
| !!! | TAAAACGGATTAATTATTGG+AGG | - | chr7.3:91252828-91252847 | None:intergenic | 25.0% |
| !!! | TATTTTGAAGACATGAATGA+AGG | + | chr7.3:91254517-91254536 | MS.gene54433:CDS | 25.0% |
| !!! | TGACATTTATTTTGATAACG+TGG | + | chr7.3:91254264-91254283 | MS.gene54433:CDS | 25.0% |
| AAGTAAGGAGAACAACATAA+GGG | + | chr7.3:91253468-91253487 | MS.gene54433:intron | 30.0% | |
| AGCAAACTAAACTAAATGTC+TGG | - | chr7.3:91253889-91253908 | None:intergenic | 30.0% | |
| ATGAATCTTCATGTTAAGGA+GGG | - | chr7.3:91254311-91254330 | None:intergenic | 30.0% | |
| CTATAAGGAAGAATTAGACT+TGG | + | chr7.3:91253981-91254000 | MS.gene54433:CDS | 30.0% | |
| CTCACCAAATCTATTACATT+AGG | + | chr7.3:91253915-91253934 | MS.gene54433:intron | 30.0% | |
| GATAAATTGTGAATCCCTTT+AGG | - | chr7.3:91254382-91254401 | None:intergenic | 30.0% | |
| GGCATTCCTATACATTAAAA+CGG | - | chr7.3:91252843-91252862 | None:intergenic | 30.0% | |
| GTTTCTAAATGTTACACTTG+CGG | - | chr7.3:91253372-91253391 | None:intergenic | 30.0% | |
| TTATTCTCTATAGATGTCAG+TGG | + | chr7.3:91253427-91253446 | MS.gene54433:intron | 30.0% | |
| ! | AAACCTGTTCCAAGAATTTT+GGG | - | chr7.3:91254468-91254487 | None:intergenic | 30.0% |
| ! | AAAGCATTTCTGATCCTAAA+GGG | + | chr7.3:91254365-91254384 | MS.gene54433:CDS | 30.0% |
| ! | ACCGAAAAATGTATTGATCA+AGG | + | chr7.3:91253216-91253235 | MS.gene54433:intron | 30.0% |
| ! | TTTTAATGTATAGGAATGCC+GGG | + | chr7.3:91252843-91252862 | MS.gene54433:intron | 30.0% |
| !! | CGATGAAGCTTTTAACTATA+AGG | + | chr7.3:91253966-91253985 | MS.gene54433:CDS | 30.0% |
| !! | GTTTCAAGTTTCTACAAACA+AGG | + | chr7.3:91254484-91254503 | MS.gene54433:CDS | 30.0% |
| !! | GTTTTAATGTATAGGAATGC+CGG | + | chr7.3:91252842-91252861 | MS.gene54433:intron | 30.0% |
| !!! | AACATATTCTCCACTTTTTG+GGG | - | chr7.3:91252904-91252923 | None:intergenic | 30.0% |
| !!! | ATTTATTTTGATAACGTGGG+CGG | + | chr7.3:91254268-91254287 | MS.gene54433:CDS | 30.0% |
| AAAGGTGAGTTTCATGTACA+AGG | + | chr7.3:91254016-91254035 | MS.gene54433:intron | 35.0% | |
| AAATAAATGTCAAGGCCTTC+AGG | - | chr7.3:91254256-91254275 | None:intergenic | 35.0% | |
| AATGCGCTTATAAATGAGAG+AGG | - | chr7.3:91254404-91254423 | None:intergenic | 35.0% | |
| ACACTTGCGGTATTTAATTC+TGG | - | chr7.3:91253359-91253378 | None:intergenic | 35.0% | |
| AGTAAGGAGAACAACATAAG+GGG | + | chr7.3:91253469-91253488 | MS.gene54433:intron | 35.0% | |
| CATGAATCTTCATGTTAAGG+AGG | - | chr7.3:91254312-91254331 | None:intergenic | 35.0% | |
| CTCACAAGTTAGCATATTTC+GGG | - | chr7.3:91253398-91253417 | None:intergenic | 35.0% | |
| CTCCTTAACATGAAGATTCA+TGG | + | chr7.3:91254310-91254329 | MS.gene54433:CDS | 35.0% | |
| GAACTTGTACCCAAAATTCT+TGG | + | chr7.3:91254456-91254475 | MS.gene54433:CDS | 35.0% | |
| GAAGTAAGGAGAACAACATA+AGG | + | chr7.3:91253467-91253486 | MS.gene54433:intron | 35.0% | |
| GATAATCCAAATTTCAAGGC+CGG | + | chr7.3:91252598-91252617 | MS.gene54433:CDS | 35.0% | |
| GCTCACAAGTTAGCATATTT+CGG | - | chr7.3:91253399-91253418 | None:intergenic | 35.0% | |
| TATAAGCGCATTAGAATGCA+GGG | + | chr7.3:91254412-91254431 | MS.gene54433:CDS | 35.0% | |
| TCACAAGTTAGCATATTTCG+GGG | - | chr7.3:91253397-91253416 | None:intergenic | 35.0% | |
| TCATAAGCTATAAGAAAGGG+TGG | - | chr7.3:91253521-91253540 | None:intergenic | 35.0% | |
| TGATTTGAACCAAAGGCTAA+AGG | - | chr7.3:91252791-91252810 | None:intergenic | 35.0% | |
| TGCCATGAATCTTCATGTTA+AGG | - | chr7.3:91254315-91254334 | None:intergenic | 35.0% | |
| TTAGTCTGCCTAATTTCAGA+TGG | - | chr7.3:91253304-91253323 | None:intergenic | 35.0% | |
| TTATAAGCGCATTAGAATGC+AGG | + | chr7.3:91254411-91254430 | MS.gene54433:CDS | 35.0% | |
| TTCTACAAGAGTTTAAACCC+TGG | + | chr7.3:91252764-91252783 | MS.gene54433:intron | 35.0% | |
| ! | ATTGACAGGTATTTTCCTGA+AGG | + | chr7.3:91254238-91254257 | MS.gene54433:intron | 35.0% |
| ! | CAAAGCATTTCTGATCCTAA+AGG | + | chr7.3:91254364-91254383 | MS.gene54433:CDS | 35.0% |
| ! | GAAACCTGTTCCAAGAATTT+TGG | - | chr7.3:91254469-91254488 | None:intergenic | 35.0% |
| ! | TAATGGTTTTCCATTGTCTC+AGG | + | chr7.3:91254054-91254073 | MS.gene54433:intron | 35.0% |
| !! | ACTCAACTGATTTGAACCAA+AGG | - | chr7.3:91252798-91252817 | None:intergenic | 35.0% |
| !! | TGTTTTTGTATCAGCAGCAT+CGG | + | chr7.3:91252920-91252939 | MS.gene54433:CDS | 35.0% |
| !!! | AGGACAGTTTTTTCTGCAAT+AGG | - | chr7.3:91253328-91253347 | None:intergenic | 35.0% |
| AAAAGTCCAACAAAAGCAGC+TGG | - | chr7.3:91254556-91254575 | None:intergenic | 40.0% | |
| AAACCCCGAAATGTAATCAC+CGG | - | chr7.3:91252620-91252639 | None:intergenic | 40.0% | |
| AAGACCAAGATGGAAGGAAA+GGG | - | chr7.3:91252716-91252735 | None:intergenic | 40.0% | |
| AAGCACTTCTGAGTGCTAAT+CGG | + | chr7.3:91254127-91254146 | MS.gene54433:intron | 40.0% | |
| ACTTGGATGCAGCTCTTAAA+AGG | + | chr7.3:91253998-91254017 | MS.gene54433:CDS | 40.0% | |
| AGAAAGGGTGGCATAATTTC+TGG | - | chr7.3:91253509-91253528 | None:intergenic | 40.0% | |
| ATGGCAGAATTGCAGTTTGT+GGG | + | chr7.3:91254329-91254348 | MS.gene54433:CDS | 40.0% | |
| GATTACATTTCGGGGTTTAC+TGG | + | chr7.3:91252622-91252641 | MS.gene54433:CDS | 40.0% | |
| GTACCCAAAATTCTTGGAAC+AGG | + | chr7.3:91254462-91254481 | MS.gene54433:CDS | 40.0% | |
| TAATCACCGGCCTTGAAATT+TGG | - | chr7.3:91252607-91252626 | None:intergenic | 40.0% | |
| TGAACACAGCTTATCCAAAC+AGG | - | chr7.3:91254155-91254174 | None:intergenic | 40.0% | |
| TGAAGACATGAATGAAGGCT+TGG | + | chr7.3:91254522-91254541 | MS.gene54433:CDS | 40.0% | |
| TTGCATGGTTGCTATGTTGT+TGG | + | chr7.3:91252978-91252997 | MS.gene54433:CDS | 40.0% | |
| ! | GCTTTTGTTGGACTTTTCCT+CGG | + | chr7.3:91254559-91254578 | MS.gene54433:CDS | 40.0% |
| ! | GTTTTTGTATCAGCAGCATC+GGG | + | chr7.3:91252921-91252940 | MS.gene54433:CDS | 40.0% |
| !! | AAGTGCTGGCTCAAAAGAAA+AGG | + | chr7.3:91253001-91253020 | MS.gene54433:CDS | 40.0% |
| !! | ATGAAGGTGCTTGAAGGATT+TGG | + | chr7.3:91252553-91252572 | MS.gene54433:CDS | 40.0% |
| !! | CACTCAGAAGTGCTTGTATA+CGG | - | chr7.3:91254122-91254141 | None:intergenic | 40.0% |
| !!! | TTTTCGTTGGCTCAATTGAC+AGG | + | chr7.3:91254224-91254243 | MS.gene54433:intron | 40.0% |
| AACCAAAGGCTAAAGGACCA+GGG | - | chr7.3:91252784-91252803 | None:intergenic | 45.0% | |
| AAGGCCGGTGATTACATTTC+GGG | + | chr7.3:91252613-91252632 | MS.gene54433:CDS | 45.0% | |
| ACCTAGAAGACCAAGATGGA+AGG | - | chr7.3:91252722-91252741 | None:intergenic | 45.0% | |
| AGACCAAGATGGAAGGAAAG+GGG | - | chr7.3:91252715-91252734 | None:intergenic | 45.0% | |
| AGCACTTCTGAGTGCTAATC+GGG | + | chr7.3:91254128-91254147 | MS.gene54433:intron | 45.0% | |
| AGGTACCTAGAAGACCAAGA+TGG | - | chr7.3:91252726-91252745 | None:intergenic | 45.0% | |
| ATTCCCCTTTCCTTCCATCT+TGG | + | chr7.3:91252709-91252728 | MS.gene54433:CDS | 45.0% | |
| CAAGGCCGGTGATTACATTT+CGG | + | chr7.3:91252612-91252631 | MS.gene54433:CDS | 45.0% | |
| CATGGCAGAATTGCAGTTTG+TGG | + | chr7.3:91254328-91254347 | MS.gene54433:CDS | 45.0% | |
| CCAGTTGCGAAAAATTGAGC+CGG | + | chr7.3:91252678-91252697 | MS.gene54433:CDS | 45.0% | |
| GAAAGGGGAATGTGATCATC+CGG | - | chr7.3:91252700-91252719 | None:intergenic | 45.0% | |
| GAAGACCAAGATGGAAGGAA+AGG | - | chr7.3:91252717-91252736 | None:intergenic | 45.0% | |
| ! | TCCTTCCATCTTGGTCTTCT+AGG | + | chr7.3:91252718-91252737 | MS.gene54433:CDS | 45.0% |
| ! | TGCTATGTTGTTGGAAGTGC+TGG | + | chr7.3:91252987-91253006 | MS.gene54433:CDS | 45.0% |
| !! | AGCGTATGCTGGGTTTTATG+AGG | + | chr7.3:91252872-91252891 | MS.gene54433:CDS | 45.0% |
| !! | AGGGTGGCATAATTTCTGGT+CGG | - | chr7.3:91253505-91253524 | None:intergenic | 45.0% |
| !! | GGTCAACTTGCTAAGTTGCA+TGG | + | chr7.3:91252963-91252982 | MS.gene54433:CDS | 45.0% |
| ACATTTCGGGGTTTACTGGC+TGG | + | chr7.3:91252626-91252645 | MS.gene54433:CDS | 50.0% | |
| AGGCCGGTGATTACATTTCG+GGG | + | chr7.3:91252614-91252633 | MS.gene54433:CDS | 50.0% | |
| AGTGCTAATCGGGACCTGTT+TGG | + | chr7.3:91254138-91254157 | MS.gene54433:intron | 50.0% | |
| CCAGCATACGCTGTAAATCC+CGG | - | chr7.3:91252864-91252883 | None:intergenic | 50.0% | |
| CGGGATTTACAGCGTATGCT+GGG | + | chr7.3:91252862-91252881 | MS.gene54433:CDS | 50.0% | |
| GAACCAAAGGCTAAAGGACC+AGG | - | chr7.3:91252785-91252804 | None:intergenic | 50.0% | |
| GAGGTGTGTTCCCCAAAAAG+TGG | + | chr7.3:91252891-91252910 | MS.gene54433:CDS | 50.0% | |
| ! | AACCCTGGTCCTTTAGCCTT+TGG | + | chr7.3:91252779-91252798 | MS.gene54433:intron | 50.0% |
| ! | CATTTCGGGGTTTACTGGCT+GGG | + | chr7.3:91252627-91252646 | MS.gene54433:CDS | 50.0% |
| ! | CCGGCTCAATTTTTCGCAAC+TGG | - | chr7.3:91252681-91252700 | None:intergenic | 50.0% |
| ! | CTTTTCCTCGGCAAGAACGT+CGG | + | chr7.3:91254571-91254590 | MS.gene54433:CDS | 50.0% |
| ! | GGTGTTGTGGGTCAACTTGT+TGG | + | chr7.3:91252942-91252961 | MS.gene54433:CDS | 50.0% |
| !!! | AGTGCTCCAGCTGCTTTTGT+TGG | + | chr7.3:91254547-91254566 | MS.gene54433:CDS | 50.0% |
| CCGGGATTTACAGCGTATGC+TGG | + | chr7.3:91252861-91252880 | MS.gene54433:CDS | 55.0% | |
| ! | ATCAGCAGCATCGGGTGTTG+TGG | + | chr7.3:91252929-91252948 | MS.gene54433:CDS | 55.0% |
| ! | TCAGCAGCATCGGGTGTTGT+GGG | + | chr7.3:91252930-91252949 | MS.gene54433:CDS | 55.0% |
| GCTTACCGACGTTCTTGCCG+AGG | - | chr7.3:91254579-91254598 | None:intergenic | 60.0% | |
| ! | TTCGGGGTTTACTGGCTGGG+AGG | + | chr7.3:91252630-91252649 | MS.gene54433:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 91252553 | 91254624 | 91252553 | ID=MS.gene54433 |
| chr7.3 | mRNA | 91252553 | 91254624 | 91252553 | ID=MS.gene54433.t1;Parent=MS.gene54433 |
| chr7.3 | exon | 91252553 | 91252739 | 91252553 | ID=MS.gene54433.t1.exon1;Parent=MS.gene54433.t1 |
| chr7.3 | CDS | 91252553 | 91252739 | 91252553 | ID=cds.MS.gene54433.t1;Parent=MS.gene54433.t1 |
| chr7.3 | exon | 91252856 | 91253022 | 91252856 | ID=MS.gene54433.t1.exon2;Parent=MS.gene54433.t1 |
| chr7.3 | CDS | 91252856 | 91253022 | 91252856 | ID=cds.MS.gene54433.t1;Parent=MS.gene54433.t1 |
| chr7.3 | exon | 91253937 | 91254019 | 91253937 | ID=MS.gene54433.t1.exon3;Parent=MS.gene54433.t1 |
| chr7.3 | CDS | 91253937 | 91254019 | 91253937 | ID=cds.MS.gene54433.t1;Parent=MS.gene54433.t1 |
| chr7.3 | exon | 91254246 | 91254624 | 91254246 | ID=MS.gene54433.t1.exon4;Parent=MS.gene54433.t1 |
| chr7.3 | CDS | 91254246 | 91254624 | 91254246 | ID=cds.MS.gene54433.t1;Parent=MS.gene54433.t1 |
| Gene Sequence |
| Protein sequence |
