Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54434.t1 | XP_013447807.1 | 98.4 | 321 | 5 | 0 | 1 | 321 | 26 | 346 | 1.20E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54434.t1 | Q9SLN8 | 65.3 | 323 | 106 | 3 | 1 | 321 | 25 | 343 | 5.7e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54434.t1 | I3SE71 | 98.4 | 321 | 5 | 0 | 1 | 321 | 26 | 346 | 8.9e-182 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54434 | MS.gene022737 | PPI |
| MS.gene54434 | MS.gene020227 | PPI |
| MS.gene020225 | MS.gene54434 | PPI |
| MS.gene54434 | MS.gene022735 | PPI |
| MS.gene54434 | MS.gene45375 | PPI |
| MS.gene54434 | MS.gene39314 | PPI |
| MS.gene54434 | MS.gene020226 | PPI |
| MS.gene020077 | MS.gene54434 | PPI |
| MS.gene54434 | MS.gene022738 | PPI |
| MS.gene54434 | MS.gene39326 | PPI |
| MS.gene54434 | MS.gene022722 | PPI |
| MS.gene54434 | MS.gene020076 | PPI |
| MS.gene54434 | MS.gene022721 | PPI |
| MS.gene54434 | MS.gene39312 | PPI |
| MS.gene54434 | MS.gene39315 | PPI |
| MS.gene54434 | MS.gene39313 | PPI |
| MS.gene54434 | MS.gene39327 | PPI |
| MS.gene54434 | MS.gene020239 | PPI |
| MS.gene54434 | MS.gene022736 | PPI |
| MS.gene54434 | MS.gene020033 | PPI |
| MS.gene54434 | MS.gene020228 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54434.t1 | MTR_7g406860 | 98.442 | 321 | 5 | 0 | 1 | 321 | 26 | 346 | 0.0 | 649 |
| MS.gene54434.t1 | MTR_8g010030 | 64.078 | 309 | 109 | 2 | 14 | 321 | 37 | 344 | 9.85e-140 | 399 |
| MS.gene54434.t1 | MTR_8g009820 | 63.961 | 308 | 110 | 1 | 14 | 321 | 96 | 402 | 3.08e-138 | 397 |
| MS.gene54434.t1 | MTR_8g009830 | 62.987 | 308 | 112 | 2 | 14 | 321 | 37 | 342 | 3.90e-138 | 395 |
| MS.gene54434.t1 | MTR_8g009980 | 62.866 | 307 | 111 | 2 | 17 | 321 | 39 | 344 | 1.16e-137 | 394 |
| MS.gene54434.t1 | MTR_8g009840 | 61.921 | 302 | 113 | 2 | 14 | 315 | 37 | 336 | 1.02e-131 | 385 |
| MS.gene54434.t1 | MTR_4g082970 | 60.577 | 312 | 118 | 3 | 14 | 321 | 40 | 350 | 9.24e-130 | 374 |
| MS.gene54434.t1 | MTR_8g010020 | 66.418 | 268 | 89 | 1 | 54 | 321 | 46 | 312 | 1.12e-126 | 365 |
| MS.gene54434.t1 | MTR_8g010000 | 54.286 | 315 | 114 | 4 | 11 | 321 | 31 | 319 | 1.89e-113 | 331 |
| MS.gene54434.t1 | MTR_0011s0280 | 48.710 | 310 | 153 | 2 | 17 | 321 | 38 | 346 | 5.78e-110 | 323 |
| MS.gene54434.t1 | MTR_2g088190 | 41.801 | 311 | 177 | 3 | 12 | 318 | 37 | 347 | 1.23e-82 | 254 |
| MS.gene54434.t1 | MTR_2g088220 | 41.158 | 311 | 179 | 3 | 12 | 318 | 38 | 348 | 7.39e-77 | 239 |
| MS.gene54434.t1 | MTR_2g088200 | 40.248 | 323 | 188 | 4 | 1 | 318 | 26 | 348 | 1.03e-75 | 236 |
| MS.gene54434.t1 | MTR_8g007325 | 63.388 | 183 | 66 | 1 | 14 | 196 | 37 | 218 | 5.72e-74 | 227 |
| MS.gene54434.t1 | MTR_5g095030 | 53.906 | 128 | 59 | 0 | 192 | 319 | 9 | 136 | 7.59e-44 | 147 |
| MS.gene54434.t1 | MTR_4g086410 | 35.366 | 246 | 145 | 6 | 79 | 318 | 385 | 622 | 9.20e-30 | 119 |
| MS.gene54434.t1 | MTR_4g086400 | 34.959 | 246 | 146 | 5 | 79 | 318 | 245 | 482 | 1.27e-29 | 118 |
| MS.gene54434.t1 | MTR_4g086400 | 34.959 | 246 | 146 | 6 | 79 | 318 | 385 | 622 | 2.69e-29 | 118 |
| MS.gene54434.t1 | MTR_3g093620 | 26.690 | 281 | 182 | 8 | 47 | 316 | 68 | 335 | 7.16e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54434.t1 | AT1G65560 | 70.062 | 324 | 94 | 2 | 1 | 321 | 27 | 350 | 9.74e-169 | 473 |
| MS.gene54434.t1 | AT1G26320 | 62.883 | 326 | 113 | 5 | 2 | 321 | 28 | 351 | 1.44e-141 | 404 |
| MS.gene54434.t1 | AT5G16990 | 64.935 | 308 | 104 | 3 | 17 | 321 | 37 | 343 | 2.10e-141 | 403 |
| MS.gene54434.t1 | AT1G65560 | 71.218 | 271 | 75 | 2 | 54 | 321 | 4 | 274 | 1.33e-140 | 399 |
| MS.gene54434.t1 | AT5G16970 | 63.430 | 309 | 108 | 3 | 17 | 321 | 38 | 345 | 6.55e-139 | 397 |
| MS.gene54434.t1 | AT3G03080 | 64.286 | 308 | 106 | 2 | 17 | 321 | 44 | 350 | 6.68e-139 | 397 |
| MS.gene54434.t1 | AT1G26320 | 61.656 | 326 | 112 | 6 | 2 | 321 | 28 | 346 | 6.90e-137 | 392 |
| MS.gene54434.t1 | AT5G17000 | 61.875 | 320 | 117 | 3 | 6 | 321 | 27 | 345 | 6.40e-136 | 389 |
| MS.gene54434.t1 | AT5G37980 | 61.613 | 310 | 113 | 3 | 17 | 321 | 45 | 353 | 2.60e-134 | 385 |
| MS.gene54434.t1 | AT5G16960 | 63.399 | 306 | 109 | 1 | 17 | 319 | 39 | 344 | 6.59e-134 | 384 |
| MS.gene54434.t1 | AT5G16960 | 63.399 | 306 | 109 | 1 | 17 | 319 | 39 | 344 | 6.59e-134 | 384 |
| MS.gene54434.t1 | AT5G37940 | 60.323 | 310 | 117 | 3 | 17 | 321 | 45 | 353 | 3.74e-132 | 380 |
| MS.gene54434.t1 | AT3G59845 | 58.075 | 322 | 131 | 2 | 1 | 319 | 26 | 346 | 1.81e-129 | 373 |
| MS.gene54434.t1 | AT5G38000 | 59.416 | 308 | 119 | 3 | 17 | 319 | 45 | 351 | 1.36e-128 | 371 |
| MS.gene54434.t1 | AT5G38000 | 58.983 | 295 | 115 | 3 | 17 | 306 | 45 | 338 | 1.05e-121 | 353 |
| MS.gene54434.t1 | AT5G38000 | 54.870 | 308 | 114 | 4 | 17 | 319 | 45 | 332 | 2.08e-111 | 327 |
| MS.gene54434.t1 | AT5G16980 | 67.965 | 231 | 73 | 1 | 91 | 321 | 10 | 239 | 1.27e-109 | 318 |
| MS.gene54434.t1 | AT5G16980 | 67.965 | 231 | 73 | 1 | 91 | 321 | 10 | 239 | 1.27e-109 | 318 |
| MS.gene54434.t1 | AT5G16980 | 67.965 | 231 | 73 | 1 | 91 | 321 | 76 | 305 | 5.24e-109 | 320 |
| MS.gene54434.t1 | AT3G59845 | 63.115 | 244 | 89 | 1 | 76 | 319 | 2 | 244 | 9.79e-107 | 311 |
| MS.gene54434.t1 | AT5G17000 | 61.224 | 196 | 71 | 3 | 6 | 197 | 27 | 221 | 6.02e-77 | 236 |
| MS.gene54434.t1 | AT1G49670 | 32.028 | 281 | 174 | 8 | 47 | 318 | 346 | 618 | 1.96e-29 | 118 |
| MS.gene54434.t1 | AT1G49670 | 30.201 | 298 | 180 | 8 | 47 | 318 | 346 | 641 | 1.67e-27 | 113 |
| MS.gene54434.t1 | AT5G37960 | 40.964 | 83 | 49 | 0 | 236 | 318 | 21 | 103 | 6.79e-14 | 67.4 |
Find 60 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCTGTTCCAAGAATTT+TGG | 0.102012 | 7.3:-91243226 | None:intergenic |
| TCCTTCCATCTTGGTCTTCT+AGG | 0.131701 | 7.3:+91241436 | MS.gene54434:CDS |
| TAATCACCGGCCTTGAAATT+TGG | 0.149936 | 7.3:-91241322 | None:intergenic |
| GATTACATTTCGGGGTTTAC+TGG | 0.217196 | 7.3:+91241340 | MS.gene54434:CDS |
| GAACTTGTACCCAAAATTCT+TGG | 0.233497 | 7.3:+91243216 | MS.gene54434:CDS |
| CAAGGCCGGTGATTACATTT+CGG | 0.268678 | 7.3:+91241330 | MS.gene54434:CDS |
| ACTTGGATGCAGCTCTTAAA+AGG | 0.292712 | 7.3:+91242758 | MS.gene54434:CDS |
| GATAAATTGTGAATCCCTTT+AGG | 0.298286 | 7.3:-91243139 | None:intergenic |
| TGCTATGTTGTTGGAAGTGC+TGG | 0.328797 | 7.3:+91241705 | MS.gene54434:CDS |
| ATTCCCCTTTCCTTCCATCT+TGG | 0.335942 | 7.3:+91241427 | MS.gene54434:CDS |
| AAGGCCGGTGATTACATTTC+GGG | 0.337567 | 7.3:+91241331 | MS.gene54434:CDS |
| CGCATACGACCACGCATGTA+TGG | 0.365643 | 7.3:-91239846 | None:intergenic |
| AAATAAATGTCAATGCCTTC+AGG | 0.368926 | 7.3:-91243013 | None:intergenic |
| ATGAAGGCGCTTGAAGGATT+TGG | 0.393763 | 7.3:+91241271 | MS.gene54434:intron |
| ACATTTCGGGGTTTACTGGC+TGG | 0.403093 | 7.3:+91241344 | MS.gene54434:CDS |
| GTACCCAAAATTCTTGGAAC+AGG | 0.409285 | 7.3:+91243222 | MS.gene54434:CDS |
| AAAGCATTTCTGATCCTAAA+GGG | 0.424492 | 7.3:+91243125 | MS.gene54434:CDS |
| CTATGAATGAAGGCGCTTGA+AGG | 0.436870 | 7.3:+91241265 | MS.gene54434:intron |
| CTACTTAACATGAAGATTCA+TGG | 0.444521 | 7.3:+91243070 | MS.gene54434:CDS |
| CATGGCAGAATTGCAGTTTG+TGG | 0.452504 | 7.3:+91243088 | MS.gene54434:CDS |
| CAAAGCATTTCTGATCCTAA+AGG | 0.453165 | 7.3:+91243124 | MS.gene54434:CDS |
| CCGGGATTTACAGCGTATGC+TGG | 0.455021 | 7.3:+91241579 | MS.gene54434:CDS |
| AGGTTGGTATGTACCTTAGA+AGG | 0.462718 | 7.3:-91239903 | None:intergenic |
| CATGAATCTTCATGTTAAGT+AGG | 0.464855 | 7.3:-91243069 | None:intergenic |
| TGAAGACATGAATGAAGGCT+TGG | 0.469697 | 7.3:+91243282 | MS.gene54434:CDS |
| GGTGCTGTGGGTCAACTTGT+TGG | 0.474317 | 7.3:+91241660 | MS.gene54434:CDS |
| ATCTGATAATCCAAATTTCA+AGG | 0.478005 | 7.3:+91241312 | MS.gene54434:CDS |
| TTATAAGCGCATAAGAATGC+AGG | 0.478286 | 7.3:+91243171 | MS.gene54434:CDS |
| GAACTTCTAAAGAATAAACT+TGG | 0.481093 | 7.3:+91242700 | MS.gene54434:CDS |
| TTGCATGGTTGCTATGTTGT+TGG | 0.484821 | 7.3:+91241696 | MS.gene54434:CDS |
| GAAAGGGGAATGTGATCATC+CGG | 0.494018 | 7.3:-91241415 | None:intergenic |
| ATCAGCAGCATCAGGTGCTG+TGG | 0.501901 | 7.3:+91241647 | MS.gene54434:CDS |
| ATGGCAGAATTGCAGTTTGT+GGG | 0.508223 | 7.3:+91243089 | MS.gene54434:CDS |
| CTATAAGGAAGAATTAGACT+TGG | 0.510802 | 7.3:+91242741 | MS.gene54434:CDS |
| CATTTCGGGGTTTACTGGCT+GGG | 0.512700 | 7.3:+91241345 | MS.gene54434:CDS |
| AAGACCAAGATGGAAGGAAA+GGG | 0.513146 | 7.3:-91241431 | None:intergenic |
| AAAAGTCCAACAAAAGCAGC+TGG | 0.517496 | 7.3:-91243313 | None:intergenic |
| TGTACCTTAGAAGGAACAAA+AGG | 0.523157 | 7.3:-91239894 | None:intergenic |
| AAGTGCTGGCTCAAAAGAAA+AGG | 0.532764 | 7.3:+91241719 | MS.gene54434:CDS |
| CCAGCATACGCTGTAAATCC+CGG | 0.538529 | 7.3:-91241579 | None:intergenic |
| AGGCCGGTGATTACATTTCG+GGG | 0.548894 | 7.3:+91241332 | MS.gene54434:CDS |
| ATGAATCTTCATGTTAAGTA+GGG | 0.549328 | 7.3:-91243068 | None:intergenic |
| GGTCAACTTGCTAAGTTGCA+TGG | 0.556467 | 7.3:+91241681 | MS.gene54434:CDS |
| GATAATCCAAATTTCAAGGC+CGG | 0.560730 | 7.3:+91241316 | MS.gene54434:CDS |
| GAAGACCAAGATGGAAGGAA+AGG | 0.562674 | 7.3:-91241432 | None:intergenic |
| GTTTCGAGTTTCTACAAACA+AGG | 0.573760 | 7.3:+91243244 | MS.gene54434:CDS |
| TATAAGCGCATAAGAATGCA+GGG | 0.579765 | 7.3:+91243172 | MS.gene54434:CDS |
| TCAGCAGCATCAGGTGCTGT+GGG | 0.584990 | 7.3:+91241648 | MS.gene54434:CDS |
| AAACCCCGAAATGTAATCAC+CGG | 0.592715 | 7.3:-91241335 | None:intergenic |
| ACCTTAGAAGGAACAAAAGG+AGG | 0.593323 | 7.3:-91239891 | None:intergenic |
| CCTTAGAAGGAACAAAAGGA+GGG | 0.602999 | 7.3:-91239890 | None:intergenic |
| ACCTAGAAGACCAAGATGGA+AGG | 0.604666 | 7.3:-91241437 | None:intergenic |
| TTGACAAGAAGAGCTTGTGA+TGG | 0.607001 | 7.3:-91239801 | None:intergenic |
| TTCGGGGTTTACTGGCTGGG+AGG | 0.611452 | 7.3:+91241348 | MS.gene54434:CDS |
| GCTTACCGACGTTCTTGCCG+AGG | 0.623068 | 7.3:-91243336 | None:intergenic |
| TATGCGCTTATAAATGAGAG+AGG | 0.629309 | 7.3:-91243161 | None:intergenic |
| AGGTACCTAGAAGACCAAGA+TGG | 0.642818 | 7.3:-91241441 | None:intergenic |
| AGACCAAGATGGAAGGAAAG+GGG | 0.653687 | 7.3:-91241430 | None:intergenic |
| TCTTGTGATCCATACATGCG+TGG | 0.660148 | 7.3:+91239837 | MS.gene54434:CDS |
| GGGCGGTGACATGCTTGATG+CGG | 0.708431 | 7.3:+91243045 | MS.gene54434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAACATATAGTAAATTA+AGG | - | chr7.3:91239934-91239953 | None:intergenic | 10.0% |
| !! | ATAGATTAAAAATAATTTAG+AGG | + | chr7.3:91241068-91241087 | MS.gene54434:intron | 10.0% |
| !! | ATTAACATATAGTAAATTAA+GGG | - | chr7.3:91239933-91239952 | None:intergenic | 10.0% |
| !! | TTAATTTACTATATGTTAAT+TGG | + | chr7.3:91239933-91239952 | MS.gene54434:intron | 10.0% |
| !! | AAAAAAGTTTAGATAAAAGA+AGG | - | chr7.3:91242968-91242987 | None:intergenic | 15.0% |
| !! | AAATAGTAGAAAATAACATA+TGG | - | chr7.3:91242424-91242443 | None:intergenic | 15.0% |
| !! | AGTAATAAAATAAAGTCAAA+TGG | - | chr7.3:91240760-91240779 | None:intergenic | 15.0% |
| !! | ATATATTAAGTGCTTAATTA+CGG | + | chr7.3:91240355-91240374 | MS.gene54434:intron | 15.0% |
| !! | TCAAAATTAATTCTCATTAT+AGG | - | chr7.3:91240916-91240935 | None:intergenic | 15.0% |
| !!! | AATTGTTTCTCATTATATAT+AGG | - | chr7.3:91240470-91240489 | None:intergenic | 15.0% |
| !!! | GGATATTATAAAGTTTTTAA+TGG | + | chr7.3:91242797-91242816 | MS.gene54434:intron | 15.0% |
| !! | AACCAAACATCATATAAATA+TGG | - | chr7.3:91240893-91240912 | None:intergenic | 20.0% |
| !! | GAACTATAGAAATGTAAAAA+TGG | - | chr7.3:91241094-91241113 | None:intergenic | 20.0% |
| !! | GATAGATTTAAATTAGATGA+GGG | + | chr7.3:91240563-91240582 | MS.gene54434:intron | 20.0% |
| !! | TAAGATAAGCTAAATAAACT+GGG | - | chr7.3:91242342-91242361 | None:intergenic | 20.0% |
| !! | TAATGAATACAAAATCATGA+AGG | + | chr7.3:91242002-91242021 | MS.gene54434:intron | 20.0% |
| !! | TACTTCTACTATGTTATTAA+AGG | - | chr7.3:91242207-91242226 | None:intergenic | 20.0% |
| !! | TATAGTAAATTAAGGGATAA+AGG | - | chr7.3:91239926-91239945 | None:intergenic | 20.0% |
| !! | TATATTAAGTGCTTAATTAC+GGG | + | chr7.3:91240356-91240375 | MS.gene54434:intron | 20.0% |
| !! | TGATAGATTTAAATTAGATG+AGG | + | chr7.3:91240562-91240581 | MS.gene54434:intron | 20.0% |
| !! | TTAATAACATAGTAGAAGTA+AGG | + | chr7.3:91242207-91242226 | MS.gene54434:intron | 20.0% |
| !!! | ATTAATCCGTTTTAATGTAT+AGG | + | chr7.3:91241552-91241571 | MS.gene54434:intron | 20.0% |
| !!! | CATTAAAACGGATTAATTAT+TGG | - | chr7.3:91241549-91241568 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTATAAACTTTTG+AGG | + | chr7.3:91240245-91240264 | MS.gene54434:intron | 20.0% |
| !!! | TTTATCTAAACTTTTTTCGT+TGG | + | chr7.3:91242971-91242990 | MS.gene54434:intron | 20.0% |
| ! | AAACTATAGAGGATAGTTTA+TGG | - | chr7.3:91240705-91240724 | None:intergenic | 25.0% |
| ! | AAAGTGAATTGAATTTGAAG+TGG | - | chr7.3:91241015-91241034 | None:intergenic | 25.0% |
| ! | AACTATAGAGGATAGTTTAT+GGG | - | chr7.3:91240704-91240723 | None:intergenic | 25.0% |
| ! | AAGTATTTAGCATTCTAGAT+AGG | - | chr7.3:91241464-91241483 | None:intergenic | 25.0% |
| ! | AATAACATTAGCGAAAAATG+AGG | - | chr7.3:91241181-91241200 | None:intergenic | 25.0% |
| ! | AATGAATTGATCGACTATAA+TGG | - | chr7.3:91240042-91240061 | None:intergenic | 25.0% |
| ! | AGTAGAAAATAACATATGGA+TGG | - | chr7.3:91242420-91242439 | None:intergenic | 25.0% |
| ! | ATATTAAGTGCTTAATTACG+GGG | + | chr7.3:91240357-91240376 | MS.gene54434:intron | 25.0% |
| ! | ATCTGATAATCCAAATTTCA+AGG | + | chr7.3:91241312-91241331 | MS.gene54434:CDS | 25.0% |
| ! | ATGAATCTTCATGTTAAGTA+GGG | - | chr7.3:91243071-91243090 | None:intergenic | 25.0% |
| ! | ATGTATTCATAAGCTATCTA+AGG | - | chr7.3:91242458-91242477 | None:intergenic | 25.0% |
| ! | ATTGAATCATTTGAACTTAC+TGG | + | chr7.3:91240142-91240161 | MS.gene54434:intron | 25.0% |
| ! | ATTTAAATTTCCTGAGACAA+TGG | - | chr7.3:91242827-91242846 | None:intergenic | 25.0% |
| ! | ATTTAATTCTGGATTTCATC+AGG | - | chr7.3:91242102-91242121 | None:intergenic | 25.0% |
| ! | GACCATATTTATATGATGTT+TGG | + | chr7.3:91240888-91240907 | MS.gene54434:intron | 25.0% |
| ! | GTAAGATAAGCTAAATAAAC+TGG | - | chr7.3:91242343-91242362 | None:intergenic | 25.0% |
| ! | TCAACCTAATGTAATAGATT+TGG | - | chr7.3:91242682-91242701 | None:intergenic | 25.0% |
| ! | TCAACTTAGAATTGATATTC+TGG | - | chr7.3:91240499-91240518 | None:intergenic | 25.0% |
| ! | TGTTCATAAGCTATAAGAAA+GGG | - | chr7.3:91242278-91242297 | None:intergenic | 25.0% |
| ! | TTGTTCATAAGCTATAAGAA+AGG | - | chr7.3:91242279-91242298 | None:intergenic | 25.0% |
| !! | ACTGAAAAATGTATTGATCA+AGG | + | chr7.3:91241970-91241989 | MS.gene54434:intron | 25.0% |
| !! | GAACTTCTAAAGAATAAACT+TGG | + | chr7.3:91242700-91242719 | MS.gene54434:CDS | 25.0% |
| !! | TGAAAAAACCATCTGAAATT+AGG | + | chr7.3:91242047-91242066 | MS.gene54434:intron | 25.0% |
| !!! | AAAACATATTCTCCACTTTT+TGG | - | chr7.3:91241624-91241643 | None:intergenic | 25.0% |
| !!! | AAACATATTCTCCACTTTTT+GGG | - | chr7.3:91241623-91241642 | None:intergenic | 25.0% |
| !!! | GACATTTATTTTGATAACGT+GGG | + | chr7.3:91243025-91243044 | MS.gene54434:CDS | 25.0% |
| !!! | TAAAACGGATTAATTATTGG+AGG | - | chr7.3:91241546-91241565 | None:intergenic | 25.0% |
| !!! | TATTTTGAAGACATGAATGA+AGG | + | chr7.3:91243277-91243296 | MS.gene54434:CDS | 25.0% |
| !!! | TGACATTTATTTTGATAACG+TGG | + | chr7.3:91243024-91243043 | MS.gene54434:CDS | 25.0% |
| AAAAATGAGGAAAAGAGGTT+AGG | - | chr7.3:91241168-91241187 | None:intergenic | 30.0% | |
| AAATAAATGTCAATGCCTTC+AGG | - | chr7.3:91243016-91243035 | None:intergenic | 30.0% | |
| AAGTAAGGAGAACAACATAA+GGG | + | chr7.3:91242222-91242241 | MS.gene54434:intron | 30.0% | |
| ACCAATACAAACTCAAGTTA+AGG | - | chr7.3:91240856-91240875 | None:intergenic | 30.0% | |
| AGCAAACTAAACTAAATGTC+TGG | - | chr7.3:91242649-91242668 | None:intergenic | 30.0% | |
| CATGAATCTTCATGTTAAGT+AGG | - | chr7.3:91243072-91243091 | None:intergenic | 30.0% | |
| CCAATACAAACTCAAGTTAA+GGG | - | chr7.3:91240855-91240874 | None:intergenic | 30.0% | |
| CTACTTAACATGAAGATTCA+TGG | + | chr7.3:91243070-91243089 | MS.gene54434:CDS | 30.0% | |
| CTATAAGGAAGAATTAGACT+TGG | + | chr7.3:91242741-91242760 | MS.gene54434:CDS | 30.0% | |
| CTCACCAAATCTATTACATT+AGG | + | chr7.3:91242675-91242694 | MS.gene54434:intron | 30.0% | |
| CTTTATACTAAGTGCTTCTT+TGG | + | chr7.3:91240814-91240833 | MS.gene54434:intron | 30.0% | |
| GATAAATTGTGAATCCCTTT+AGG | - | chr7.3:91243142-91243161 | None:intergenic | 30.0% | |
| GGCATTCCTATACATTAAAA+CGG | - | chr7.3:91241561-91241580 | None:intergenic | 30.0% | |
| GTAAATTAAGGGATAAAGGT+TGG | - | chr7.3:91239922-91239941 | None:intergenic | 30.0% | |
| GTTTCTAAATGTTACACTTG+CGG | - | chr7.3:91242126-91242145 | None:intergenic | 30.0% | |
| TTATTCTCTATAGATGTCAG+TGG | + | chr7.3:91242181-91242200 | MS.gene54434:intron | 30.0% | |
| TTCTACAAGAGTTTAAATCC+TGG | + | chr7.3:91241482-91241501 | MS.gene54434:intron | 30.0% | |
| ! | AAACCTGTTCCAAGAATTTT+GGG | - | chr7.3:91243228-91243247 | None:intergenic | 30.0% |
| ! | AAAGCATTTCTGATCCTAAA+GGG | + | chr7.3:91243125-91243144 | MS.gene54434:CDS | 30.0% |
| ! | GTTGCTTTCTTAAACTATAG+AGG | - | chr7.3:91240716-91240735 | None:intergenic | 30.0% |
| ! | TCTTGCAATCAATTTTTGCT+TGG | - | chr7.3:91241884-91241903 | None:intergenic | 30.0% |
| ! | TTTTAATGTATAGGAATGCC+GGG | + | chr7.3:91241561-91241580 | MS.gene54434:intron | 30.0% |
| !! | GTTTTAATGTATAGGAATGC+CGG | + | chr7.3:91241560-91241579 | MS.gene54434:intron | 30.0% |
| !! | TGAAAAAGTGTTCATCAGAT+AGG | - | chr7.3:91242550-91242569 | None:intergenic | 30.0% |
| !!! | AACATATTCTCCACTTTTTG+GGG | - | chr7.3:91241622-91241641 | None:intergenic | 30.0% |
| !!! | ATTTATTTTGATAACGTGGG+CGG | + | chr7.3:91243028-91243047 | MS.gene54434:CDS | 30.0% |
| AAAGGTGAGTTTCATGTACA+AGG | + | chr7.3:91242776-91242795 | MS.gene54434:intron | 35.0% | |
| AAATACCATCTAAACCTCTG+TGG | + | chr7.3:91239962-91239981 | MS.gene54434:intron | 35.0% | |
| AACTTGAGTTTGCATTGCAT+TGG | + | chr7.3:91240432-91240451 | MS.gene54434:intron | 35.0% | |
| AAGTTGAGGGATTTCAATTG+TGG | - | chr7.3:91240417-91240436 | None:intergenic | 35.0% | |
| ACAAGCACTTAAACTGTATG+TGG | - | chr7.3:91240388-91240407 | None:intergenic | 35.0% | |
| ACACTTGCGGTATTTAATTC+TGG | - | chr7.3:91242113-91242132 | None:intergenic | 35.0% | |
| ACATTTCTATAGTTCAGCAC+AGG | + | chr7.3:91240595-91240614 | MS.gene54434:intron | 35.0% | |
| AGTAAGGAGAACAACATAAG+GGG | + | chr7.3:91242223-91242242 | MS.gene54434:intron | 35.0% | |
| ATACAGTTTAAGTGCTTGTC+TGG | + | chr7.3:91240389-91240408 | MS.gene54434:intron | 35.0% | |
| CTCACAAGTTAGCATATTTC+GGG | - | chr7.3:91242152-91242171 | None:intergenic | 35.0% | |
| GAACTTATGAAAGCAACTTG+TGG | + | chr7.3:91240674-91240693 | MS.gene54434:intron | 35.0% | |
| GAACTTGTACCCAAAATTCT+TGG | + | chr7.3:91243216-91243235 | MS.gene54434:CDS | 35.0% | |
| GAAGTAAGGAGAACAACATA+AGG | + | chr7.3:91242221-91242240 | MS.gene54434:intron | 35.0% | |
| GATAATCCAAATTTCAAGGC+CGG | + | chr7.3:91241316-91241335 | MS.gene54434:CDS | 35.0% | |
| GCTCACAAGTTAGCATATTT+CGG | - | chr7.3:91242153-91242172 | None:intergenic | 35.0% | |
| TAGCGAAAAATGAGGAAAAG+AGG | - | chr7.3:91241173-91241192 | None:intergenic | 35.0% | |
| TATAAGCGCATAAGAATGCA+GGG | + | chr7.3:91243172-91243191 | MS.gene54434:CDS | 35.0% | |
| TATGCGCTTATAAATGAGAG+AGG | - | chr7.3:91243164-91243183 | None:intergenic | 35.0% | |
| TCACAAGTTAGCATATTTCG+GGG | - | chr7.3:91242151-91242170 | None:intergenic | 35.0% | |
| TCATAAGCTATAAGAAAGGG+TGG | - | chr7.3:91242275-91242294 | None:intergenic | 35.0% | |
| TGAATACAGCTTATCCAAAC+AGG | - | chr7.3:91242915-91242934 | None:intergenic | 35.0% | |
| TGATTTGAACCAAAGGCTAA+AGG | - | chr7.3:91241509-91241528 | None:intergenic | 35.0% | |
| TGCGTCTAATCTATGAATGA+AGG | + | chr7.3:91241255-91241274 | MS.gene54434:intron | 35.0% | |
| TGTACCTTAGAAGGAACAAA+AGG | - | chr7.3:91239897-91239916 | None:intergenic | 35.0% | |
| TTAGTCTGCCTAATTTCAGA+TGG | - | chr7.3:91242058-91242077 | None:intergenic | 35.0% | |
| TTATAAGCGCATAAGAATGC+AGG | + | chr7.3:91243171-91243190 | MS.gene54434:CDS | 35.0% | |
| ! | ATTGACAGGTATTTTCCTGA+AGG | + | chr7.3:91242998-91243017 | MS.gene54434:intron | 35.0% |
| ! | CAAAGCATTTCTGATCCTAA+AGG | + | chr7.3:91243124-91243143 | MS.gene54434:CDS | 35.0% |
| ! | CAGTTACGAAGTCTTACTTT+TGG | - | chr7.3:91241778-91241797 | None:intergenic | 35.0% |
| ! | CCCTTAACTTGAGTTTGTAT+TGG | + | chr7.3:91240852-91240871 | MS.gene54434:intron | 35.0% |
| ! | GAAACCTGTTCCAAGAATTT+TGG | - | chr7.3:91243229-91243248 | None:intergenic | 35.0% |
| ! | GACATGTAAGTCTTGTGTTA+GGG | + | chr7.3:91240084-91240103 | MS.gene54434:intron | 35.0% |
| ! | TAATGGTTTTCCATTGTCTC+AGG | + | chr7.3:91242814-91242833 | MS.gene54434:intron | 35.0% |
| ! | TGACATGTAAGTCTTGTGTT+AGG | + | chr7.3:91240083-91240102 | MS.gene54434:intron | 35.0% |
| ! | TGCAATCAATTTTTGCTTGG+AGG | - | chr7.3:91241881-91241900 | None:intergenic | 35.0% |
| !! | ACTCAACTGATTTGAACCAA+AGG | - | chr7.3:91241516-91241535 | None:intergenic | 35.0% |
| !! | CGACGAAGCTTTTAACTATA+AGG | + | chr7.3:91242726-91242745 | MS.gene54434:CDS | 35.0% |
| !! | GAGTTTGTATTGGTTAAACG+TGG | + | chr7.3:91240862-91240881 | MS.gene54434:intron | 35.0% |
| !! | GTTAGTTCTAAGAGTCTGTT+TGG | + | chr7.3:91240116-91240135 | MS.gene54434:intron | 35.0% |
| !! | GTTTCGAGTTTCTACAAACA+AGG | + | chr7.3:91243244-91243263 | MS.gene54434:CDS | 35.0% |
| !!! | AGGACAGTTTTTTCTGCAAT+AGG | - | chr7.3:91242082-91242101 | None:intergenic | 35.0% |
| AAAAGTCCAACAAAAGCAGC+TGG | - | chr7.3:91243316-91243335 | None:intergenic | 40.0% | |
| AAACCCCGAAATGTAATCAC+CGG | - | chr7.3:91241338-91241357 | None:intergenic | 40.0% | |
| AAGACCAAGATGGAAGGAAA+GGG | - | chr7.3:91241434-91241453 | None:intergenic | 40.0% | |
| AAGCACTTCTGAGTGCTAAT+CGG | + | chr7.3:91242887-91242906 | MS.gene54434:intron | 40.0% | |
| ACCTTAGAAGGAACAAAAGG+AGG | - | chr7.3:91239894-91239913 | None:intergenic | 40.0% | |
| ACTTGGATGCAGCTCTTAAA+AGG | + | chr7.3:91242758-91242777 | MS.gene54434:CDS | 40.0% | |
| AGAAAGGGTGGCATAATTTC+TGG | - | chr7.3:91242263-91242282 | None:intergenic | 40.0% | |
| ATGGCAGAATTGCAGTTTGT+GGG | + | chr7.3:91243089-91243108 | MS.gene54434:CDS | 40.0% | |
| CCTTAGAAGGAACAAAAGGA+GGG | - | chr7.3:91239893-91239912 | None:intergenic | 40.0% | |
| GATTACATTTCGGGGTTTAC+TGG | + | chr7.3:91241340-91241359 | MS.gene54434:CDS | 40.0% | |
| GTACCCAAAATTCTTGGAAC+AGG | + | chr7.3:91243222-91243241 | MS.gene54434:CDS | 40.0% | |
| TAATCACCGGCCTTGAAATT+TGG | - | chr7.3:91241325-91241344 | None:intergenic | 40.0% | |
| TCGACTATAATGGCACATGT+CGG | - | chr7.3:91240032-91240051 | None:intergenic | 40.0% | |
| TGAAGACATGAATGAAGGCT+TGG | + | chr7.3:91243282-91243301 | MS.gene54434:CDS | 40.0% | |
| TTGACAAGAAGAGCTTGTGA+TGG | - | chr7.3:91239804-91239823 | None:intergenic | 40.0% | |
| TTGCATGGTTGCTATGTTGT+TGG | + | chr7.3:91241696-91241715 | MS.gene54434:CDS | 40.0% | |
| ! | AGCGTATGCTGGATTTTATG+AGG | + | chr7.3:91241590-91241609 | MS.gene54434:CDS | 40.0% |
| ! | GCTTTTGTTGGACTTTTCCT+CGG | + | chr7.3:91243319-91243338 | MS.gene54434:CDS | 40.0% |
| ! | GTTTTTGTATCAGCAGCATC+AGG | + | chr7.3:91241639-91241658 | MS.gene54434:CDS | 40.0% |
| ! | TCTAAGACATGTCTAGTGTC+TGG | + | chr7.3:91240000-91240019 | MS.gene54434:intron | 40.0% |
| ! | TGAGTTTGCATTGCATTGGT+TGG | + | chr7.3:91240436-91240455 | MS.gene54434:intron | 40.0% |
| ! | TGCAATGCAAACTCAAGTTG+AGG | - | chr7.3:91240431-91240450 | None:intergenic | 40.0% |
| !! | AAGTGCTGGCTCAAAAGAAA+AGG | + | chr7.3:91241719-91241738 | MS.gene54434:CDS | 40.0% |
| !! | AGGTTGGTATGTACCTTAGA+AGG | - | chr7.3:91239906-91239925 | None:intergenic | 40.0% |
| !! | AGTTCTAAGAGTCTGTTTGG+TGG | + | chr7.3:91240119-91240138 | MS.gene54434:intron | 40.0% |
| !! | CACTCAGAAGTGCTTGTATA+CGG | - | chr7.3:91242882-91242901 | None:intergenic | 40.0% |
| !! | GAGTTTGCATTGCATTGGTT+GGG | + | chr7.3:91240437-91240456 | MS.gene54434:intron | 40.0% |
| !! | GCAATGCAAACTCAAGTTGA+GGG | - | chr7.3:91240430-91240449 | None:intergenic | 40.0% |
| !! | GTGCTTCTTTGGTTCTACAA+TGG | + | chr7.3:91240825-91240844 | MS.gene54434:intron | 40.0% |
| !!! | TTTTCGTTGGCTCAATTGAC+AGG | + | chr7.3:91242984-91243003 | MS.gene54434:intron | 40.0% |
| AAGGCCGGTGATTACATTTC+GGG | + | chr7.3:91241331-91241350 | MS.gene54434:CDS | 45.0% | |
| ACCTAGAAGACCAAGATGGA+AGG | - | chr7.3:91241440-91241459 | None:intergenic | 45.0% | |
| AGACCAAGATGGAAGGAAAG+GGG | - | chr7.3:91241433-91241452 | None:intergenic | 45.0% | |
| AGACTTCGTAACTGTGTCGA+TGG | + | chr7.3:91241784-91241803 | MS.gene54434:intron | 45.0% | |
| AGCACTTCTGAGTGCTAATC+GGG | + | chr7.3:91242888-91242907 | MS.gene54434:intron | 45.0% | |
| AGGTACCTAGAAGACCAAGA+TGG | - | chr7.3:91241444-91241463 | None:intergenic | 45.0% | |
| ATTCCCCTTTCCTTCCATCT+TGG | + | chr7.3:91241427-91241446 | MS.gene54434:CDS | 45.0% | |
| CAAGGCCGGTGATTACATTT+CGG | + | chr7.3:91241330-91241349 | MS.gene54434:CDS | 45.0% | |
| CATGGCAGAATTGCAGTTTG+TGG | + | chr7.3:91243088-91243107 | MS.gene54434:CDS | 45.0% | |
| CCAGTTGCGAAAAATTGAGC+CGG | + | chr7.3:91241396-91241415 | MS.gene54434:CDS | 45.0% | |
| GAAAGGGGAATGTGATCATC+CGG | - | chr7.3:91241418-91241437 | None:intergenic | 45.0% | |
| GAAGACCAAGATGGAAGGAA+AGG | - | chr7.3:91241435-91241454 | None:intergenic | 45.0% | |
| TCTTGTGATCCATACATGCG+TGG | + | chr7.3:91239837-91239856 | MS.gene54434:CDS | 45.0% | |
| ! | AATCCTGGTCCTTTAGCCTT+TGG | + | chr7.3:91241497-91241516 | MS.gene54434:intron | 45.0% |
| ! | CCCTCCTTTTGTTCCTTCTA+AGG | + | chr7.3:91239890-91239909 | MS.gene54434:CDS | 45.0% |
| ! | CTGTGTCGATGGTTTCGTTT+AGG | + | chr7.3:91241795-91241814 | MS.gene54434:intron | 45.0% |
| ! | GGTCGTATGCGTGATTTTCA+TGG | + | chr7.3:91239858-91239877 | MS.gene54434:CDS | 45.0% |
| ! | TCCTTCCATCTTGGTCTTCT+AGG | + | chr7.3:91241436-91241455 | MS.gene54434:CDS | 45.0% |
| ! | TGCTATGTTGTTGGAAGTGC+TGG | + | chr7.3:91241705-91241724 | MS.gene54434:CDS | 45.0% |
| !! | AGGGTGGCATAATTTCTGGT+CGG | - | chr7.3:91242259-91242278 | None:intergenic | 45.0% |
| !! | ATGAAGGCGCTTGAAGGATT+TGG | + | chr7.3:91241271-91241290 | MS.gene54434:intron | 45.0% |
| !! | CTATGAATGAAGGCGCTTGA+AGG | + | chr7.3:91241265-91241284 | MS.gene54434:intron | 45.0% |
| !! | GGTCAACTTGCTAAGTTGCA+TGG | + | chr7.3:91241681-91241700 | MS.gene54434:CDS | 45.0% |
| ACATTTCGGGGTTTACTGGC+TGG | + | chr7.3:91241344-91241363 | MS.gene54434:CDS | 50.0% | |
| AGGCCGGTGATTACATTTCG+GGG | + | chr7.3:91241332-91241351 | MS.gene54434:CDS | 50.0% | |
| AGTGCTAATCGGGACCTGTT+TGG | + | chr7.3:91242898-91242917 | MS.gene54434:intron | 50.0% | |
| CCAGCATACGCTGTAAATCC+CGG | - | chr7.3:91241582-91241601 | None:intergenic | 50.0% | |
| CTGTGCCACAGAGGTTTAGA+TGG | - | chr7.3:91239970-91239989 | None:intergenic | 50.0% | |
| GAACCAAAGGCTAAAGGACC+AGG | - | chr7.3:91241503-91241522 | None:intergenic | 50.0% | |
| GAGGTGTGTTCCCCAAAAAG+TGG | + | chr7.3:91241609-91241628 | MS.gene54434:CDS | 50.0% | |
| ! | CATTTCGGGGTTTACTGGCT+GGG | + | chr7.3:91241345-91241364 | MS.gene54434:CDS | 50.0% |
| ! | CCGGCTCAATTTTTCGCAAC+TGG | - | chr7.3:91241399-91241418 | None:intergenic | 50.0% |
| ! | CTTTTCCTCGGCAAGAACGT+CGG | + | chr7.3:91243331-91243350 | MS.gene54434:CDS | 50.0% |
| !!! | AGTGCTCCAGCTGCTTTTGT+TGG | + | chr7.3:91243307-91243326 | MS.gene54434:CDS | 50.0% |
| CCGGGATTTACAGCGTATGC+TGG | + | chr7.3:91241579-91241598 | MS.gene54434:CDS | 55.0% | |
| CGCATACGACCACGCATGTA+TGG | - | chr7.3:91239849-91239868 | None:intergenic | 55.0% | |
| ! | ATCAGCAGCATCAGGTGCTG+TGG | + | chr7.3:91241647-91241666 | MS.gene54434:CDS | 55.0% |
| ! | GGTGCTGTGGGTCAACTTGT+TGG | + | chr7.3:91241660-91241679 | MS.gene54434:CDS | 55.0% |
| ! | TCAGCAGCATCAGGTGCTGT+GGG | + | chr7.3:91241648-91241667 | MS.gene54434:CDS | 55.0% |
| !! | CAGAAGTGTCTGTGCCACAG+AGG | - | chr7.3:91239979-91239998 | None:intergenic | 55.0% |
| GCTTACCGACGTTCTTGCCG+AGG | - | chr7.3:91243339-91243358 | None:intergenic | 60.0% | |
| GGGCGGTGACATGCTTGATG+CGG | + | chr7.3:91243045-91243064 | MS.gene54434:CDS | 60.0% | |
| ! | TTCGGGGTTTACTGGCTGGG+AGG | + | chr7.3:91241348-91241367 | MS.gene54434:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 91239756 | 91243384 | 91239756 | ID=MS.gene54434 |
| chr7.3 | mRNA | 91239756 | 91243384 | 91239756 | ID=MS.gene54434.t1;Parent=MS.gene54434 |
| chr7.3 | exon | 91239756 | 91239911 | 91239756 | ID=MS.gene54434.t1.exon1;Parent=MS.gene54434.t1 |
| chr7.3 | CDS | 91239756 | 91239911 | 91239756 | ID=cds.MS.gene54434.t1;Parent=MS.gene54434.t1 |
| chr7.3 | exon | 91241277 | 91241457 | 91241277 | ID=MS.gene54434.t1.exon2;Parent=MS.gene54434.t1 |
| chr7.3 | CDS | 91241277 | 91241457 | 91241277 | ID=cds.MS.gene54434.t1;Parent=MS.gene54434.t1 |
| chr7.3 | exon | 91241574 | 91241740 | 91241574 | ID=MS.gene54434.t1.exon3;Parent=MS.gene54434.t1 |
| chr7.3 | CDS | 91241574 | 91241740 | 91241574 | ID=cds.MS.gene54434.t1;Parent=MS.gene54434.t1 |
| chr7.3 | exon | 91242697 | 91242779 | 91242697 | ID=MS.gene54434.t1.exon4;Parent=MS.gene54434.t1 |
| chr7.3 | CDS | 91242697 | 91242779 | 91242697 | ID=cds.MS.gene54434.t1;Parent=MS.gene54434.t1 |
| chr7.3 | exon | 91243006 | 91243384 | 91243006 | ID=MS.gene54434.t1.exon5;Parent=MS.gene54434.t1 |
| chr7.3 | CDS | 91243006 | 91243384 | 91243006 | ID=cds.MS.gene54434.t1;Parent=MS.gene54434.t1 |
| Gene Sequence |
| Protein sequence |
