AlfalfaGEDB | MS.gene55280

M. sativa cultivar XinJiangDaYe / MS.gene55280

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55280.t1	XP_003613878.1	98.7	477	6	0	1	477	11	487	1.30E-251	878.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55280.t1	G7JWG4	98.7	477	6	0	1	477	11	487	9.3e-252	878.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene55280	0.834609	2.72E-56	-1.69E-46
MS.gene049151	MS.gene55280	0.817257	3.62E-52	-1.69E-46
MS.gene049153	MS.gene55280	0.827915	1.20E-54	-1.69E-46
MS.gene049378	MS.gene55280	0.804373	2.23E-49	-1.69E-46
MS.gene049758	MS.gene55280	0.842867	1.99E-58	-1.69E-46
MS.gene049910	MS.gene55280	0.80741	5.12E-50	-1.69E-46
MS.gene049915	MS.gene55280	0.820698	5.98E-53	-1.69E-46
MS.gene050226	MS.gene55280	0.806546	7.81E-50	-1.69E-46
MS.gene050228	MS.gene55280	0.800147	1.65E-48	-1.69E-46
MS.gene050623	MS.gene55280	-0.80702	6.20E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55280.t1	MTR_5g042100	98.323	477	8	0	1	477	11	487	0.0	968

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55280.t1	AT1G26761	59.596	396	149	6	93	477	49	444	6.50e-165	473

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Find 114 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCAAATGATTTAAT+AGG	0.237998	5.2:-31652754	MS.gene55280:CDS
AAAGTGATGAAGAAGAGAGA+TGG	0.613076	5.2:-31652807	MS.gene55280:CDS
AAATTGGGGAAAATAATGGG+GGG	0.644713	5.2:-31652181	MS.gene55280:CDS
AACGGTGTTCATTGGGAACG+CGG	0.630404	5.2:-31652715	MS.gene55280:CDS
AAGAAGAGAGATGGTACATG+TGG	0.624333	5.2:-31652798	MS.gene55280:CDS
AAGCCAAGATGGTAGAAATT+GGG	0.471060	5.2:-31652404	MS.gene55280:CDS
AAGCCTATTAAATCATTTGA+AGG	0.408664	5.2:+31652751	None:intergenic
AAGGTGTAGGTAGCAATGGA+AGG	0.571652	5.2:-31652069	MS.gene55280:CDS
AAGGTTGTATGGTTTCAATG+AGG	0.584303	5.2:+31653203	None:intergenic
AATCATGAGAATTTCGGTAA+AGG	0.479835	5.2:-31652460	MS.gene55280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATGAGAATTTCGGTAA+AGG	-	chr5.2:31652555-31652574	MS.gene55280:CDS	30.0%
ACTCACAACAAAAACAACAA+TGG	-	chr5.2:31651988-31652007	MS.gene55280:CDS	30.0%
ATAAAGCCAATAAACAGCAT+TGG	+	chr5.2:31652457-31652476	None:intergenic	30.0%
ATCATGGAAATGGTGATTTA+AGG	-	chr5.2:31652730-31652749	MS.gene55280:CDS	30.0%
CAAGTTGTTTATCATGGAAA+TGG	-	chr5.2:31652720-31652739	MS.gene55280:CDS	30.0%
GAATGGAGATTGTATTATAG+AGG	-	chr5.2:31653119-31653138	MS.gene55280:CDS	30.0%
GTGAAATTGGGGAAAATAAT+GGG	-	chr5.2:31652831-31652850	MS.gene55280:CDS	30.0%
GTTAATCATGTCTAGTTACA+GGG	-	chr5.2:31652422-31652441	MS.gene55280:CDS	30.0%
TGAAATTGGGGAAAATAATG+GGG	-	chr5.2:31652832-31652851	MS.gene55280:CDS	30.0%
TGATGAATTGTGGTAAAGAT+TGG	-	chr5.2:31652361-31652380	MS.gene55280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	31651802	31653235	31651802	ID=MS.gene55280
chr5.2	mRNA	31651802	31653235	31651802	ID=MS.gene55280.t1;Parent=MS.gene55280
chr5.2	exon	31651802	31653235	31651802	ID=MS.gene55280.t1.exon1;Parent=MS.gene55280.t1
chr5.2	CDS	31651802	31653235	31651802	ID=cds.MS.gene55280.t1;Parent=MS.gene55280.t1

Gene Sequence

>MS.gene55280

ATGGCACTTCCCTCATTGAAACCATACAACCTTAAAAACCCAACATCAATCTTAATTCAATCATGGTCATGTTCTCATAAACCCAACACTCTTACTCTTGTCTCCTCAAACCATTCACTCACCACTAAGTTTCAATCTTTCTTATTACATTGCTCTACAAAACCAGACACAAACACCAACAATGATACTCACAACAAAAACAACAATGGAGTCAATTCACTTTCTAACAAAAATCACAACGAATCACAACAAGAAGAGGAAAATGAAGCATTTTCATCTGCATCATCGTCTTTACAATCTTCATCTTCTACTAGCTCTTTGTGTTCAAGAGGGTTAGTGTTTGATTTAGGTTTTTCAAATTCATGGGACAGTGAAGATATTGGATCACCAGTAGTGAAAAGGTTTCAAAGTGATGAAGAAGAGAGATGGTACATGTGGTATCATGGAAGACCAAAAGGAAAACCTTCAAATGATTTAATAGGCTTAGCAATTTCGAGCAACGGTGTTCATTGGGAACGCGGTGGAGGTCCTGCAAAATCAAGTTCTGATGTTGGTTTTGTGATGAATTGTGGTAAAGATTGGTGGGGTTTCGATACTCGCGGAATTAGGCCTTCTGGATTGTTAATCATGTCTAGTTACAGGGTTAGAGGTTCCAATGCTGTTTATTGGCTTTATTACACCGGATACGGTTCTGAATCTGTAGAGTTTCGTGATCATTCTTTCGAGTTTAGTTTTGAAAACCCAAATGGTTTAAATCATGAGAATTTCGGTAAAGGTAAGATTTTGAAGTCATTACCTGGTTTAGCTATAAGCCAAGATGGTAGAAATTGGGCTAGAATTGAAGGAGAGCATCATAGTGGAGCATTAATAGATGTTGGTAAAGAGAAAGATTGGGATTCATTGTTTATTTCCTCACCACAAGTTGTTTATCATGGAAATGGTGATTTAAGGATGTATTATCATTCATTTGATAAGGAAAAAGGAGAGTTTTGCATTGGTATTGCTAGGTCAAGAGATGGAATTAGGTGGGTGAAATTGGGGAAAATAATGGGGGGAGGTAAAGTTGGTTCTTTTGATGAGTTAGGAGTGATGAATGCTTGTGTTACAAGGAACAAGAGTGGTGGGAATTATGTGATGGTTTATGAAGGTGTAGGTAGCAATGGAAGGAGGTGTATTGGTGTTGCAGTTTCACCTGATGGGTTGATGGAATGGGTTAGGCTTCAAGATGAGGCTATTTTGATGCCATCAGATGAAGGTTGTTGGGATGATAAAGATGTTGGTTCACCTTGTTTTGTTTATATGGATAATGAAGAAAATGAATGGAGATTGTATTATAGAGGTGTTGGTAATGGAGGTAGAGTTGGAATTGGAATGACTGTTTCTGAAGGGAAGGATATTAGAAGTTTTAGAAGATGGACTGGTTTTCATGTATAA

Protein sequence

>MS.gene55280.t1

MALPSLKPYNLKNPTSILIQSWSCSHKPNTLTLVSSNHSLTTKFQSFLLHCSTKPDTNTNNDTHNKNNNGVNSLSNKNHNESQQEEENEAFSSASSSLQSSSSTSSLCSRGLVFDLGFSNSWDSEDIGSPVVKRFQSDEEERWYMWYHGRPKGKPSNDLIGLAISSNGVHWERGGGPAKSSSDVGFVMNCGKDWWGFDTRGIRPSGLLIMSSYRVRGSNAVYWLYYTGYGSESVEFRDHSFEFSFENPNGLNHENFGKGKILKSLPGLAISQDGRNWARIEGEHHSGALIDVGKEKDWDSLFISSPQVVYHGNGDLRMYYHSFDKEKGEFCIGIARSRDGIRWVKLGKIMGGGKVGSFDELGVMNACVTRNKSGGNYVMVYEGVGSNGRRCIGVAVSPDGLMEWVRLQDEAILMPSDEGCWDDKDVGSPCFVYMDNEENEWRLYYRGVGNGGRVGIGMTVSEGKDIRSFRRWTGFHV