Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55280.t1 | XP_003613878.1 | 98.7 | 477 | 6 | 0 | 1 | 477 | 11 | 487 | 1.30E-251 | 878.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55280.t1 | G7JWG4 | 98.7 | 477 | 6 | 0 | 1 | 477 | 11 | 487 | 9.3e-252 | 878.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene55280 | 0.834609 | 2.72E-56 | -1.69E-46 |
| MS.gene049151 | MS.gene55280 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene55280 | 0.827915 | 1.20E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene55280 | 0.804373 | 2.23E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene55280 | 0.842867 | 1.99E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene55280 | 0.80741 | 5.12E-50 | -1.69E-46 |
| MS.gene049915 | MS.gene55280 | 0.820698 | 5.98E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene55280 | 0.806546 | 7.81E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene55280 | 0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene55280 | -0.80702 | 6.20E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene55280 | 0.806524 | 7.89E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene55280 | 0.818792 | 1.63E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene55280 | 0.806458 | 8.15E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene55280 | 0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene55280 | 0.809797 | 1.58E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene55280 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene053494 | MS.gene55280 | 0.801873 | 7.33E-49 | -1.69E-46 |
| MS.gene053559 | MS.gene55280 | 0.805383 | 1.37E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene55280 | 0.835821 | 1.34E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene55280 | 0.874949 | 4.53E-68 | -1.69E-46 |
| MS.gene05510 | MS.gene55280 | 0.809421 | 1.91E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene55280 | 0.812685 | 3.74E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene55280 | 0.830183 | 3.39E-55 | -1.69E-46 |
| MS.gene057450 | MS.gene55280 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene55280 | 0.801436 | 9.01E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene55280 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene55280 | 0.837673 | 4.52E-57 | -1.69E-46 |
| MS.gene058710 | MS.gene55280 | 0.802117 | 6.53E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene55280 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene55280 | 0.845016 | 5.28E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene55280 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene55280 | 0.820266 | 7.51E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene55280 | 0.802954 | 4.39E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene55280 | 0.814027 | 1.90E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene55280 | 0.839122 | 1.91E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55280.t1 | MTR_5g042100 | 98.323 | 477 | 8 | 0 | 1 | 477 | 11 | 487 | 0.0 | 968 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55280.t1 | AT1G26761 | 59.596 | 396 | 149 | 6 | 93 | 477 | 49 | 444 | 6.50e-165 | 473 |
Find 114 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAATTAGGTGGGTGAAAT+TGG | 0.139205 | 5.2:-31652197 | MS.gene55280:CDS |
| ATCATGGAAATGGTGATTTA+AGG | 0.149315 | 5.2:-31652285 | MS.gene55280:CDS |
| CATTCATTTGATAAGGAAAA+AGG | 0.213740 | 5.2:-31652253 | MS.gene55280:CDS |
| AAACCTTCAAATGATTTAAT+AGG | 0.237998 | 5.2:-31652754 | MS.gene55280:CDS |
| TTCTCATGATTTAAACCATT+TGG | 0.240997 | 5.2:+31652472 | None:intergenic |
| AGAGGGTTAGTGTTTGATTT+AGG | 0.258061 | 5.2:-31652886 | MS.gene55280:CDS |
| TAAGCCAAGATGGTAGAAAT+TGG | 0.278165 | 5.2:-31652405 | MS.gene55280:CDS |
| TGTTAATCATGTCTAGTTAC+AGG | 0.300794 | 5.2:-31652594 | MS.gene55280:CDS |
| GGTTTAAATCATGAGAATTT+CGG | 0.313489 | 5.2:-31652466 | MS.gene55280:CDS |
| GGAATTAGGTGGGTGAAATT+GGG | 0.326124 | 5.2:-31652196 | MS.gene55280:CDS |
| CTAGGTCAAGAGATGGAATT+AGG | 0.331250 | 5.2:-31652210 | MS.gene55280:CDS |
| GGTGAAATTGGGGAAAATAA+TGG | 0.336849 | 5.2:-31652185 | MS.gene55280:CDS |
| TCTCATGATTTAAACCATTT+GGG | 0.337213 | 5.2:+31652473 | None:intergenic |
| GAGGTTCCAATGCTGTTTAT+TGG | 0.340008 | 5.2:-31652567 | MS.gene55280:CDS |
| GTTTCGATACTCGCGGAATT+AGG | 0.345083 | 5.2:-31652627 | MS.gene55280:CDS |
| GTGAAATTGGGGAAAATAAT+GGG | 0.348730 | 5.2:-31652184 | MS.gene55280:CDS |
| ACTCGCGGAATTAGGCCTTC+TGG | 0.370045 | 5.2:-31652619 | MS.gene55280:CDS |
| CACCTGATGGGTTGATGGAA+TGG | 0.376304 | 5.2:-31652024 | MS.gene55280:CDS |
| TTTCGAGCAACGGTGTTCAT+TGG | 0.377175 | 5.2:-31652723 | MS.gene55280:CDS |
| GTATTATCATTCATTTGATA+AGG | 0.387153 | 5.2:-31652260 | MS.gene55280:CDS |
| TAAGAAAGATTGAAACTTAG+TGG | 0.395763 | 5.2:+31653092 | None:intergenic |
| ATGGGTTGATGGAATGGGTT+AGG | 0.396031 | 5.2:-31652018 | MS.gene55280:CDS |
| TAGCCCAATTTCTACCATCT+TGG | 0.396055 | 5.2:+31652401 | None:intergenic |
| ATGTCTAGTTACAGGGTTAG+AGG | 0.399278 | 5.2:-31652586 | MS.gene55280:CDS |
| TTCGAGCAACGGTGTTCATT+GGG | 0.401282 | 5.2:-31652722 | MS.gene55280:CDS |
| CAAGTTGTTTATCATGGAAA+TGG | 0.403220 | 5.2:-31652295 | MS.gene55280:CDS |
| TCATGGGACAGTGAAGATAT+TGG | 0.404022 | 5.2:-31652853 | MS.gene55280:CDS |
| TCACCACAAGTTGTTTATCA+TGG | 0.407758 | 5.2:-31652301 | MS.gene55280:CDS |
| AAGCCTATTAAATCATTTGA+AGG | 0.408664 | 5.2:+31652751 | None:intergenic |
| AATGGAGGTAGAGTTGGAAT+TGG | 0.408906 | 5.2:-31651866 | MS.gene55280:CDS |
| TCATTGTTGGTGTTTGTGTC+TGG | 0.409966 | 5.2:+31653051 | None:intergenic |
| TATTATAGAGGTGTTGGTAA+TGG | 0.413647 | 5.2:-31651884 | MS.gene55280:CDS |
| TTTGTTGTGAGTATCATTGT+TGG | 0.419756 | 5.2:+31653038 | None:intergenic |
| GAGACAAGAGTAAGAGTGTT+GGG | 0.434560 | 5.2:+31653132 | None:intergenic |
| ATGTTGGTAAAGAGAAAGAT+TGG | 0.449705 | 5.2:-31652342 | MS.gene55280:CDS |
| TGATGAATTGTGGTAAAGAT+TGG | 0.461891 | 5.2:-31652654 | MS.gene55280:CDS |
| AGCAATGGAAGGAGGTGTAT+TGG | 0.464134 | 5.2:-31652058 | MS.gene55280:CDS |
| AGTTTCACCTGATGGGTTGA+TGG | 0.470552 | 5.2:-31652029 | MS.gene55280:CDS |
| AAGCCAAGATGGTAGAAATT+GGG | 0.471060 | 5.2:-31652404 | MS.gene55280:CDS |
| AGAAATTGGGCTAGAATTGA+AGG | 0.475837 | 5.2:-31652391 | MS.gene55280:CDS |
| GGTGTTGCAGTTTCACCTGA+TGG | 0.476150 | 5.2:-31652037 | MS.gene55280:CDS |
| AATCATGAGAATTTCGGTAA+AGG | 0.479835 | 5.2:-31652460 | MS.gene55280:CDS |
| TGGCTTTATTACACCGGATA+CGG | 0.481215 | 5.2:-31652547 | MS.gene55280:CDS |
| AGATGGTACATGTGGTATCA+TGG | 0.481590 | 5.2:-31652790 | MS.gene55280:CDS |
| TGGATAATGAAGAAAATGAA+TGG | 0.485792 | 5.2:-31651913 | MS.gene55280:CDS |
| ACCTGATGGGTTGATGGAAT+GGG | 0.486307 | 5.2:-31652023 | MS.gene55280:CDS |
| TTGGATCACCAGTAGTGAAA+AGG | 0.489596 | 5.2:-31652834 | MS.gene55280:CDS |
| ACCCATTCCATCAACCCATC+AGG | 0.491138 | 5.2:+31652022 | None:intergenic |
| GCAAAATCAAGTTCTGATGT+TGG | 0.491582 | 5.2:-31652682 | MS.gene55280:CDS |
| GAAACTTAGTGGTGAGTGAA+TGG | 0.491961 | 5.2:+31653103 | None:intergenic |
| TGGTATCATGGAAGACCAAA+AGG | 0.493308 | 5.2:-31652778 | MS.gene55280:CDS |
| GTTCATTGGGAACGCGGTGG+AGG | 0.499247 | 5.2:-31652709 | MS.gene55280:CDS |
| AGGTTGTATGGTTTCAATGA+GGG | 0.501696 | 5.2:+31653204 | None:intergenic |
| GCCATCAGATGAAGGTTGTT+GGG | 0.501942 | 5.2:-31651972 | MS.gene55280:CDS |
| GATTGAATTAAGATTGATGT+TGG | 0.504694 | 5.2:+31653174 | None:intergenic |
| CATCAATCTTAATTCAATCA+TGG | 0.508263 | 5.2:-31653170 | MS.gene55280:CDS |
| TATAGAGGTGTTGGTAATGG+AGG | 0.508860 | 5.2:-31651881 | MS.gene55280:CDS |
| GTTGGTAATGGAGGTAGAGT+TGG | 0.510018 | 5.2:-31651872 | MS.gene55280:CDS |
| TACAGATTCAGAACCGTATC+CGG | 0.510816 | 5.2:+31652534 | None:intergenic |
| TGCCATCAGATGAAGGTTGT+TGG | 0.510863 | 5.2:-31651973 | MS.gene55280:CDS |
| GTGTTGCAGTTTCACCTGAT+GGG | 0.513696 | 5.2:-31652036 | MS.gene55280:CDS |
| TGAAATTGGGGAAAATAATG+GGG | 0.515031 | 5.2:-31652183 | MS.gene55280:CDS |
| GAATTAGGTGGGTGAAATTG+GGG | 0.519984 | 5.2:-31652195 | MS.gene55280:CDS |
| TGTTGGTAAAGAGAAAGATT+GGG | 0.521551 | 5.2:-31652341 | MS.gene55280:CDS |
| TATGAAGGTGTAGGTAGCAA+TGG | 0.523548 | 5.2:-31652073 | MS.gene55280:CDS |
| ACTAGCTCTTTGTGTTCAAG+AGG | 0.524884 | 5.2:-31652904 | MS.gene55280:CDS |
| GAATGGAGATTGTATTATAG+AGG | 0.527631 | 5.2:-31651896 | MS.gene55280:CDS |
| AGTGGTGAGTGAATGGTTTG+AGG | 0.529254 | 5.2:+31653110 | None:intergenic |
| ATAAAGCCAATAAACAGCAT+TGG | 0.529911 | 5.2:+31652561 | None:intergenic |
| TGTTGGGATGATAAAGATGT+TGG | 0.531854 | 5.2:-31651956 | MS.gene55280:CDS |
| GAAATTGGGGAAAATAATGG+GGG | 0.534807 | 5.2:-31652182 | MS.gene55280:CDS |
| GGAGACAAGAGTAAGAGTGT+TGG | 0.535645 | 5.2:+31653131 | None:intergenic |
| CAACGAATCACAACAAGAAG+AGG | 0.537820 | 5.2:-31652977 | MS.gene55280:CDS |
| GGCTTAGCAATTTCGAGCAA+CGG | 0.538014 | 5.2:-31652733 | MS.gene55280:CDS |
| AGATTGTATTATAGAGGTGT+TGG | 0.538098 | 5.2:-31651890 | MS.gene55280:CDS |
| ATTGAATTAAGATTGATGTT+GGG | 0.546482 | 5.2:+31653175 | None:intergenic |
| GTTTATTGGCTTTATTACAC+CGG | 0.549416 | 5.2:-31652553 | MS.gene55280:CDS |
| TTTCCATGATAAACAACTTG+TGG | 0.555954 | 5.2:+31652298 | None:intergenic |
| AATGACTGTTTCTGAAGGGA+AGG | 0.566232 | 5.2:-31651843 | MS.gene55280:CDS |
| AAGGTGTAGGTAGCAATGGA+AGG | 0.571652 | 5.2:-31652069 | MS.gene55280:CDS |
| CTAGCTCTTTGTGTTCAAGA+GGG | 0.574476 | 5.2:-31652903 | MS.gene55280:CDS |
| GTGTAGGTAGCAATGGAAGG+AGG | 0.574690 | 5.2:-31652066 | MS.gene55280:CDS |
| AATTATGTGATGGTTTATGA+AGG | 0.575057 | 5.2:-31652088 | MS.gene55280:CDS |
| GGTTTAGCTATAAGCCAAGA+TGG | 0.576333 | 5.2:-31652415 | MS.gene55280:CDS |
| ATTGAAGGAGAGCATCATAG+TGG | 0.576815 | 5.2:-31652376 | MS.gene55280:CDS |
| AGTGGAGCATTAATAGATGT+TGG | 0.577502 | 5.2:-31652358 | MS.gene55280:CDS |
| TCCCAACAACCTTCATCTGA+TGG | 0.581058 | 5.2:+31651971 | None:intergenic |
| AAGGTTGTATGGTTTCAATG+AGG | 0.584303 | 5.2:+31653203 | None:intergenic |
| ATGGGTTAGGCTTCAAGATG+AGG | 0.586508 | 5.2:-31652005 | MS.gene55280:CDS |
| GAATTGTGGTAAAGATTGGT+GGG | 0.587304 | 5.2:-31652650 | MS.gene55280:CDS |
| TGATGAATGCTTGTGTTACA+AGG | 0.593526 | 5.2:-31652126 | MS.gene55280:CDS |
| GTTAATCATGTCTAGTTACA+GGG | 0.597820 | 5.2:-31652593 | MS.gene55280:CDS |
| GTCAAGAGATGGAATTAGGT+GGG | 0.602363 | 5.2:-31652206 | MS.gene55280:CDS |
| TGAATTGTGGTAAAGATTGG+TGG | 0.605208 | 5.2:-31652651 | MS.gene55280:CDS |
| AATTGTGGTAAAGATTGGTG+GGG | 0.605226 | 5.2:-31652649 | MS.gene55280:CDS |
| TTGGAATGACTGTTTCTGAA+GGG | 0.606146 | 5.2:-31651847 | MS.gene55280:CDS |
| AAAGTGATGAAGAAGAGAGA+TGG | 0.613076 | 5.2:-31652807 | MS.gene55280:CDS |
| TTACAAGGAACAAGAGTGGT+GGG | 0.616509 | 5.2:-31652111 | MS.gene55280:CDS |
| GGTATTGCTAGGTCAAGAGA+TGG | 0.619076 | 5.2:-31652217 | MS.gene55280:CDS |
| GGTCAAGAGATGGAATTAGG+TGG | 0.619975 | 5.2:-31652207 | MS.gene55280:CDS |
| ATTGGAATGACTGTTTCTGA+AGG | 0.622934 | 5.2:-31651848 | MS.gene55280:CDS |
| AAGAAGAGAGATGGTACATG+TGG | 0.624333 | 5.2:-31652798 | MS.gene55280:CDS |
| ATGATAAACAACTTGTGGTG+AGG | 0.624905 | 5.2:+31652303 | None:intergenic |
| GACATGATTAACAATCCAGA+AGG | 0.629246 | 5.2:+31652604 | None:intergenic |
| AACGGTGTTCATTGGGAACG+CGG | 0.630404 | 5.2:-31652715 | MS.gene55280:CDS |
| AAATTGGGGAAAATAATGGG+GGG | 0.644713 | 5.2:-31652181 | MS.gene55280:CDS |
| TTATCCATATAAACAAAACA+AGG | 0.648044 | 5.2:+31651929 | None:intergenic |
| GTGATGGTTTATGAAGGTGT+AGG | 0.651498 | 5.2:-31652082 | MS.gene55280:CDS |
| GTTACAAGGAACAAGAGTGG+TGG | 0.662489 | 5.2:-31652112 | MS.gene55280:CDS |
| TGGTGGGGTTTCGATACTCG+CGG | 0.668074 | 5.2:-31652634 | MS.gene55280:CDS |
| TCTTGGCTTATAGCTAAACC+AGG | 0.678401 | 5.2:+31652418 | None:intergenic |
| GGTGTTCATTGGGAACGCGG+TGG | 0.687030 | 5.2:-31652712 | MS.gene55280:CDS |
| GAGTGGTGGGAATTATGTGA+TGG | 0.694007 | 5.2:-31652098 | MS.gene55280:CDS |
| TGTGTTACAAGGAACAAGAG+TGG | 0.758187 | 5.2:-31652115 | MS.gene55280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCTTCAAATGATTTAAT+AGG | - | chr5.2:31652261-31652280 | MS.gene55280:CDS | 20.0% |
| !! | ATTGAATTAAGATTGATGTT+GGG | + | chr5.2:31651843-31651862 | None:intergenic | 20.0% |
| !! | GTATTATCATTCATTTGATA+AGG | - | chr5.2:31652755-31652774 | MS.gene55280:CDS | 20.0% |
| !! | TTATCCATATAAACAAAACA+AGG | + | chr5.2:31653089-31653108 | None:intergenic | 20.0% |
| !!! | ATATTAGAAGTTTTAGAAGA+TGG | - | chr5.2:31653195-31653214 | MS.gene55280:CDS | 20.0% |
| !!! | ATTTAGGTTTTTCAAATTCA+TGG | - | chr5.2:31652145-31652164 | MS.gene55280:CDS | 20.0% |
| !!! | TTTAGGTTTTTCAAATTCAT+GGG | - | chr5.2:31652146-31652165 | MS.gene55280:CDS | 20.0% |
| ! | AAGCCTATTAAATCATTTGA+AGG | + | chr5.2:31652267-31652286 | None:intergenic | 25.0% |
| ! | AATTATGTGATGGTTTATGA+AGG | - | chr5.2:31652927-31652946 | MS.gene55280:CDS | 25.0% |
| ! | CATCAATCTTAATTCAATCA+TGG | - | chr5.2:31651845-31651864 | MS.gene55280:CDS | 25.0% |
| ! | CATTCATTTGATAAGGAAAA+AGG | - | chr5.2:31652762-31652781 | MS.gene55280:CDS | 25.0% |
| ! | GATTGAATTAAGATTGATGT+TGG | + | chr5.2:31651844-31651863 | None:intergenic | 25.0% |
| ! | GGTTTAAATCATGAGAATTT+CGG | - | chr5.2:31652549-31652568 | MS.gene55280:CDS | 25.0% |
| ! | TAAGAAAGATTGAAACTTAG+TGG | + | chr5.2:31651926-31651945 | None:intergenic | 25.0% |
| ! | TCTCATGATTTAAACCATTT+GGG | + | chr5.2:31652545-31652564 | None:intergenic | 25.0% |
| ! | TGGATAATGAAGAAAATGAA+TGG | - | chr5.2:31653102-31653121 | MS.gene55280:CDS | 25.0% |
| ! | TTCTCATGATTTAAACCATT+TGG | + | chr5.2:31652546-31652565 | None:intergenic | 25.0% |
| !!! | TTCACCTTGTTTTGTTTATA+TGG | - | chr5.2:31653082-31653101 | MS.gene55280:CDS | 25.0% |
| !!! | TTTAGTTTTGAAAACCCAAA+TGG | - | chr5.2:31652528-31652547 | MS.gene55280:CDS | 25.0% |
| AATCATGAGAATTTCGGTAA+AGG | - | chr5.2:31652555-31652574 | MS.gene55280:CDS | 30.0% | |
| ACTCACAACAAAAACAACAA+TGG | - | chr5.2:31651988-31652007 | MS.gene55280:CDS | 30.0% | |
| ATAAAGCCAATAAACAGCAT+TGG | + | chr5.2:31652457-31652476 | None:intergenic | 30.0% | |
| ATCATGGAAATGGTGATTTA+AGG | - | chr5.2:31652730-31652749 | MS.gene55280:CDS | 30.0% | |
| CAAGTTGTTTATCATGGAAA+TGG | - | chr5.2:31652720-31652739 | MS.gene55280:CDS | 30.0% | |
| GAATGGAGATTGTATTATAG+AGG | - | chr5.2:31653119-31653138 | MS.gene55280:CDS | 30.0% | |
| GTGAAATTGGGGAAAATAAT+GGG | - | chr5.2:31652831-31652850 | MS.gene55280:CDS | 30.0% | |
| GTTAATCATGTCTAGTTACA+GGG | - | chr5.2:31652422-31652441 | MS.gene55280:CDS | 30.0% | |
| TGAAATTGGGGAAAATAATG+GGG | - | chr5.2:31652832-31652851 | MS.gene55280:CDS | 30.0% | |
| TGATGAATTGTGGTAAAGAT+TGG | - | chr5.2:31652361-31652380 | MS.gene55280:CDS | 30.0% | |
| TGTTAATCATGTCTAGTTAC+AGG | - | chr5.2:31652421-31652440 | MS.gene55280:CDS | 30.0% | |
| TTTCCATGATAAACAACTTG+TGG | + | chr5.2:31652720-31652739 | None:intergenic | 30.0% | |
| ! | AGATTGATGTTGGGTTTTTA+AGG | + | chr5.2:31651834-31651853 | None:intergenic | 30.0% |
| ! | AGATTGTATTATAGAGGTGT+TGG | - | chr5.2:31653125-31653144 | MS.gene55280:CDS | 30.0% |
| ! | ATGTTGGTAAAGAGAAAGAT+TGG | - | chr5.2:31652673-31652692 | MS.gene55280:CDS | 30.0% |
| ! | TCATTTGAAGGTTTTCCTTT+TGG | + | chr5.2:31652255-31652274 | None:intergenic | 30.0% |
| ! | TGTTGGTAAAGAGAAAGATT+GGG | - | chr5.2:31652674-31652693 | MS.gene55280:CDS | 30.0% |
| ! | TTTGTTGTGAGTATCATTGT+TGG | + | chr5.2:31651980-31651999 | None:intergenic | 30.0% |
| !! | GTTTATTGGCTTTATTACAC+CGG | - | chr5.2:31652462-31652481 | MS.gene55280:CDS | 30.0% |
| !! | TATTATAGAGGTGTTGGTAA+TGG | - | chr5.2:31653131-31653150 | MS.gene55280:CDS | 30.0% |
| !!! | AAGATTTTGAAGTCATTACC+TGG | - | chr5.2:31652579-31652598 | MS.gene55280:CDS | 30.0% |
| AAAGTGATGAAGAAGAGAGA+TGG | - | chr5.2:31652208-31652227 | MS.gene55280:CDS | 35.0% | |
| AAGCCAAGATGGTAGAAATT+GGG | - | chr5.2:31652611-31652630 | MS.gene55280:CDS | 35.0% | |
| AAGGTTGTATGGTTTCAATG+AGG | + | chr5.2:31651815-31651834 | None:intergenic | 35.0% | |
| AATTGTGGTAAAGATTGGTG+GGG | - | chr5.2:31652366-31652385 | MS.gene55280:CDS | 35.0% | |
| AGGTTGTATGGTTTCAATGA+GGG | + | chr5.2:31651814-31651833 | None:intergenic | 35.0% | |
| ATGATAAACAACTTGTGGTG+AGG | + | chr5.2:31652715-31652734 | None:intergenic | 35.0% | |
| GAAATTGGGGAAAATAATGG+GGG | - | chr5.2:31652833-31652852 | MS.gene55280:CDS | 35.0% | |
| GAATTGTGGTAAAGATTGGT+GGG | - | chr5.2:31652365-31652384 | MS.gene55280:CDS | 35.0% | |
| GACATGATTAACAATCCAGA+AGG | + | chr5.2:31652414-31652433 | None:intergenic | 35.0% | |
| GGTGAAATTGGGGAAAATAA+TGG | - | chr5.2:31652830-31652849 | MS.gene55280:CDS | 35.0% | |
| TAAGCCAAGATGGTAGAAAT+TGG | - | chr5.2:31652610-31652629 | MS.gene55280:CDS | 35.0% | |
| TCACCACAAGTTGTTTATCA+TGG | - | chr5.2:31652714-31652733 | MS.gene55280:CDS | 35.0% | |
| TGAATTGTGGTAAAGATTGG+TGG | - | chr5.2:31652364-31652383 | MS.gene55280:CDS | 35.0% | |
| TGATGAATGCTTGTGTTACA+AGG | - | chr5.2:31652889-31652908 | MS.gene55280:CDS | 35.0% | |
| TGTTGGGATGATAAAGATGT+TGG | - | chr5.2:31653059-31653078 | MS.gene55280:CDS | 35.0% | |
| ! | AAATTGGGGAAAATAATGGG+GGG | - | chr5.2:31652834-31652853 | MS.gene55280:CDS | 35.0% |
| ! | ACATCAGAACTTGATTTTGC+AGG | + | chr5.2:31652333-31652352 | None:intergenic | 35.0% |
| ! | AGAAATTGGGCTAGAATTGA+AGG | - | chr5.2:31652624-31652643 | MS.gene55280:CDS | 35.0% |
| ! | AGAGGGTTAGTGTTTGATTT+AGG | - | chr5.2:31652129-31652148 | MS.gene55280:CDS | 35.0% |
| ! | AGTGGAGCATTAATAGATGT+TGG | - | chr5.2:31652657-31652676 | MS.gene55280:CDS | 35.0% |
| ! | GAAAAAGGAGAGTTTTGCAT+TGG | - | chr5.2:31652777-31652796 | MS.gene55280:CDS | 35.0% |
| ! | GCAAAATCAAGTTCTGATGT+TGG | - | chr5.2:31652333-31652352 | MS.gene55280:CDS | 35.0% |
| !! | AGTTTTGCATTGGTATTGCT+AGG | - | chr5.2:31652787-31652806 | MS.gene55280:CDS | 35.0% |
| !! | ATTGGAATGACTGTTTCTGA+AGG | - | chr5.2:31653167-31653186 | MS.gene55280:CDS | 35.0% |
| !! | ATTTTGATGCCATCAGATGA+AGG | - | chr5.2:31653035-31653054 | MS.gene55280:CDS | 35.0% |
| !! | GTTGGTTCTTTTGATGAGTT+AGG | - | chr5.2:31652864-31652883 | MS.gene55280:CDS | 35.0% |
| !! | TTGGAATGACTGTTTCTGAA+GGG | - | chr5.2:31653168-31653187 | MS.gene55280:CDS | 35.0% |
| !!! | AGAAGTTTTAGAAGATGGAC+TGG | - | chr5.2:31653200-31653219 | MS.gene55280:CDS | 35.0% |
| !!! | CTTTGAAACCTTTTCACTAC+TGG | + | chr5.2:31652192-31652211 | None:intergenic | 35.0% |
| !!! | GTTGGGTTTTTAAGGTTGTA+TGG | + | chr5.2:31651826-31651845 | None:intergenic | 35.0% |
| !!! | GTTGGTTTTGTGATGAATTG+TGG | - | chr5.2:31652351-31652370 | MS.gene55280:CDS | 35.0% |
| AAGAAGAGAGATGGTACATG+TGG | - | chr5.2:31652217-31652236 | MS.gene55280:CDS | 40.0% | |
| AATGGAGGTAGAGTTGGAAT+TGG | - | chr5.2:31653149-31653168 | MS.gene55280:CDS | 40.0% | |
| AGATGGTACATGTGGTATCA+TGG | - | chr5.2:31652225-31652244 | MS.gene55280:CDS | 40.0% | |
| ATGTCTAGTTACAGGGTTAG+AGG | - | chr5.2:31652429-31652448 | MS.gene55280:CDS | 40.0% | |
| CAACGAATCACAACAAGAAG+AGG | - | chr5.2:31652038-31652057 | MS.gene55280:CDS | 40.0% | |
| CTAGGTCAAGAGATGGAATT+AGG | - | chr5.2:31652805-31652824 | MS.gene55280:CDS | 40.0% | |
| GAAACTTAGTGGTGAGTGAA+TGG | + | chr5.2:31651915-31651934 | None:intergenic | 40.0% | |
| GAATTAGGTGGGTGAAATTG+GGG | - | chr5.2:31652820-31652839 | MS.gene55280:CDS | 40.0% | |
| GGAATTAGGTGGGTGAAATT+GGG | - | chr5.2:31652819-31652838 | MS.gene55280:CDS | 40.0% | |
| GGTTTAGCTATAAGCCAAGA+TGG | - | chr5.2:31652600-31652619 | MS.gene55280:CDS | 40.0% | |
| GTCAAGAGATGGAATTAGGT+GGG | - | chr5.2:31652809-31652828 | MS.gene55280:CDS | 40.0% | |
| TACAGATTCAGAACCGTATC+CGG | + | chr5.2:31652484-31652503 | None:intergenic | 40.0% | |
| TAGCCCAATTTCTACCATCT+TGG | + | chr5.2:31652617-31652636 | None:intergenic | 40.0% | |
| TCATGGGACAGTGAAGATAT+TGG | - | chr5.2:31652162-31652181 | MS.gene55280:CDS | 40.0% | |
| TCTTGGCTTATAGCTAAACC+AGG | + | chr5.2:31652600-31652619 | None:intergenic | 40.0% | |
| TGGAATTAGGTGGGTGAAAT+TGG | - | chr5.2:31652818-31652837 | MS.gene55280:CDS | 40.0% | |
| TGGTATCATGGAAGACCAAA+AGG | - | chr5.2:31652237-31652256 | MS.gene55280:CDS | 40.0% | |
| TGTGTTACAAGGAACAAGAG+TGG | - | chr5.2:31652900-31652919 | MS.gene55280:CDS | 40.0% | |
| TTACAAGGAACAAGAGTGGT+GGG | - | chr5.2:31652904-31652923 | MS.gene55280:CDS | 40.0% | |
| TTGGATCACCAGTAGTGAAA+AGG | - | chr5.2:31652181-31652200 | MS.gene55280:CDS | 40.0% | |
| ! | ACTAGCTCTTTGTGTTCAAG+AGG | - | chr5.2:31652111-31652130 | MS.gene55280:CDS | 40.0% |
| ! | CTAGCTCTTTGTGTTCAAGA+GGG | - | chr5.2:31652112-31652131 | MS.gene55280:CDS | 40.0% |
| ! | GAGGTTCCAATGCTGTTTAT+TGG | - | chr5.2:31652448-31652467 | MS.gene55280:CDS | 40.0% |
| ! | GTGATGGTTTATGAAGGTGT+AGG | - | chr5.2:31652933-31652952 | MS.gene55280:CDS | 40.0% |
| ! | TATGAAGGTGTAGGTAGCAA+TGG | - | chr5.2:31652942-31652961 | MS.gene55280:CDS | 40.0% |
| ! | TCATTGTTGGTGTTTGTGTC+TGG | + | chr5.2:31651967-31651986 | None:intergenic | 40.0% |
| !! | AATGACTGTTTCTGAAGGGA+AGG | - | chr5.2:31653172-31653191 | MS.gene55280:CDS | 40.0% |
| !! | ATTGAAGGAGAGCATCATAG+TGG | - | chr5.2:31652639-31652658 | MS.gene55280:CDS | 40.0% |
| !! | GAGACAAGAGTAAGAGTGTT+GGG | + | chr5.2:31651886-31651905 | None:intergenic | 40.0% |
| !! | TATAGAGGTGTTGGTAATGG+AGG | - | chr5.2:31653134-31653153 | MS.gene55280:CDS | 40.0% |
| !! | TGGCTTTATTACACCGGATA+CGG | - | chr5.2:31652468-31652487 | MS.gene55280:CDS | 40.0% |
| AAGGTGTAGGTAGCAATGGA+AGG | - | chr5.2:31652946-31652965 | MS.gene55280:CDS | 45.0% | |
| AGTGGTGAGTGAATGGTTTG+AGG | + | chr5.2:31651908-31651927 | None:intergenic | 45.0% | |
| GCCATCAGATGAAGGTTGTT+GGG | - | chr5.2:31653043-31653062 | MS.gene55280:CDS | 45.0% | |
| GGCTTAGCAATTTCGAGCAA+CGG | - | chr5.2:31652282-31652301 | MS.gene55280:CDS | 45.0% | |
| GGTATTGCTAGGTCAAGAGA+TGG | - | chr5.2:31652798-31652817 | MS.gene55280:CDS | 45.0% | |
| GGTCAAGAGATGGAATTAGG+TGG | - | chr5.2:31652808-31652827 | MS.gene55280:CDS | 45.0% | |
| GTGTTGCAGTTTCACCTGAT+GGG | - | chr5.2:31652979-31652998 | MS.gene55280:CDS | 45.0% | |
| GTTACAAGGAACAAGAGTGG+TGG | - | chr5.2:31652903-31652922 | MS.gene55280:CDS | 45.0% | |
| GTTTCGATACTCGCGGAATT+AGG | - | chr5.2:31652388-31652407 | MS.gene55280:CDS | 45.0% | |
| TCCCAACAACCTTCATCTGA+TGG | + | chr5.2:31653047-31653066 | None:intergenic | 45.0% | |
| TGCCATCAGATGAAGGTTGT+TGG | - | chr5.2:31653042-31653061 | MS.gene55280:CDS | 45.0% | |
| TTCGAGCAACGGTGTTCATT+GGG | - | chr5.2:31652293-31652312 | MS.gene55280:CDS | 45.0% | |
| TTTCGAGCAACGGTGTTCAT+TGG | - | chr5.2:31652292-31652311 | MS.gene55280:CDS | 45.0% | |
| ! | AGCAATGGAAGGAGGTGTAT+TGG | - | chr5.2:31652957-31652976 | MS.gene55280:CDS | 45.0% |
| ! | ATAATGGGGGGAGGTAAAGT+TGG | - | chr5.2:31652846-31652865 | MS.gene55280:CDS | 45.0% |
| ! | GAGTGGTGGGAATTATGTGA+TGG | - | chr5.2:31652917-31652936 | MS.gene55280:CDS | 45.0% |
| ! | GGAGACAAGAGTAAGAGTGT+TGG | + | chr5.2:31651887-31651906 | None:intergenic | 45.0% |
| !! | ACCTGATGGGTTGATGGAAT+GGG | - | chr5.2:31652992-31653011 | MS.gene55280:CDS | 45.0% |
| !! | AGTTTCACCTGATGGGTTGA+TGG | - | chr5.2:31652986-31653005 | MS.gene55280:CDS | 45.0% |
| !! | ATGGGTTAGGCTTCAAGATG+AGG | - | chr5.2:31653010-31653029 | MS.gene55280:CDS | 45.0% |
| !! | ATGGGTTGATGGAATGGGTT+AGG | - | chr5.2:31652997-31653016 | MS.gene55280:CDS | 45.0% |
| !! | GTTGGTAATGGAGGTAGAGT+TGG | - | chr5.2:31653143-31653162 | MS.gene55280:CDS | 45.0% |
| AACGGTGTTCATTGGGAACG+CGG | - | chr5.2:31652300-31652319 | MS.gene55280:CDS | 50.0% | |
| ACCCATTCCATCAACCCATC+AGG | + | chr5.2:31652996-31653015 | None:intergenic | 50.0% | |
| GTGTAGGTAGCAATGGAAGG+AGG | - | chr5.2:31652949-31652968 | MS.gene55280:CDS | 50.0% | |
| ! | GGTGTTGCAGTTTCACCTGA+TGG | - | chr5.2:31652978-31652997 | MS.gene55280:CDS | 50.0% |
| ! | TTGGGGAAAATAATGGGGGG+AGG | - | chr5.2:31652837-31652856 | MS.gene55280:CDS | 50.0% |
| !! | CACCTGATGGGTTGATGGAA+TGG | - | chr5.2:31652991-31653010 | MS.gene55280:CDS | 50.0% |
| ACTCGCGGAATTAGGCCTTC+TGG | - | chr5.2:31652396-31652415 | MS.gene55280:CDS | 55.0% | |
| TGGTGGGGTTTCGATACTCG+CGG | - | chr5.2:31652381-31652400 | MS.gene55280:CDS | 55.0% | |
| GGTGTTCATTGGGAACGCGG+TGG | - | chr5.2:31652303-31652322 | MS.gene55280:CDS | 60.0% | |
| GTTCATTGGGAACGCGGTGG+AGG | - | chr5.2:31652306-31652325 | MS.gene55280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 31651802 | 31653235 | 31651802 | ID=MS.gene55280 |
| chr5.2 | mRNA | 31651802 | 31653235 | 31651802 | ID=MS.gene55280.t1;Parent=MS.gene55280 |
| chr5.2 | exon | 31651802 | 31653235 | 31651802 | ID=MS.gene55280.t1.exon1;Parent=MS.gene55280.t1 |
| chr5.2 | CDS | 31651802 | 31653235 | 31651802 | ID=cds.MS.gene55280.t1;Parent=MS.gene55280.t1 |
| Gene Sequence |
| Protein sequence |
