Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56013.t1 | XP_003594781.2 | 95.5 | 872 | 37 | 1 | 9 | 880 | 16 | 885 | 0.00E+00 | 1364 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56013.t1 | Q5SP90 | 36.1 | 643 | 372 | 13 | 9 | 628 | 7 | 633 | 1.3e-109 | 399.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56013.t1 | G7IG10 | 95.5 | 872 | 37 | 1 | 9 | 880 | 16 | 885 | 0.0e+00 | 1364.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene56013 | 0.849694 | 2.74E-60 | -1.69E-46 |
| MS.gene049435 | MS.gene56013 | 0.800425 | 1.45E-48 | -1.69E-46 |
| MS.gene049801 | MS.gene56013 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene56013 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene56013 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene56013 | 0.823517 | 1.33E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene56013 | 0.816581 | 5.14E-52 | -1.69E-46 |
| MS.gene051210 | MS.gene56013 | 0.807689 | 4.47E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene56013 | 0.811187 | 7.94E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene56013 | 0.819529 | 1.11E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene56013 | 0.808031 | 3.78E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene56013 | 0.800418 | 1.46E-48 | -1.69E-46 |
| MS.gene053008 | MS.gene56013 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene56013 | 0.808048 | 3.75E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene56013 | 0.801007 | 1.10E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene56013 | 0.84119 | 5.52E-58 | -1.69E-46 |
| MS.gene05510 | MS.gene56013 | 0.835826 | 1.34E-56 | -1.69E-46 |
| MS.gene055222 | MS.gene56013 | 0.8147 | 1.35E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene56013 | 0.803008 | 4.28E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene56013 | 0.822502 | 2.29E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene56013 | 0.80455 | 2.05E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene56013 | 0.819148 | 1.35E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene56013 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene05761 | MS.gene56013 | 0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene56013 | 0.862511 | 4.81E-64 | -1.69E-46 |
| MS.gene057915 | MS.gene56013 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene56013 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene56013 | 0.8322 | 1.08E-55 | -1.69E-46 |
| MS.gene058595 | MS.gene56013 | 0.828652 | 7.98E-55 | -1.69E-46 |
| MS.gene058919 | MS.gene56013 | 0.817704 | 2.87E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene56013 | 0.832696 | 8.16E-56 | -1.69E-46 |
| MS.gene059283 | MS.gene56013 | 0.810098 | 1.36E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene56013 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene56013 | 0.853174 | 2.84E-61 | -1.69E-46 |
| MS.gene060167 | MS.gene56013 | 0.804556 | 2.04E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene56013 | 0.835749 | 1.40E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene56013 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene56013 | 0.817367 | 3.42E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene56013 | 0.804411 | 2.19E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene56013 | 0.849309 | 3.51E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56013.t1 | MTR_2g034560 | 97.706 | 872 | 18 | 1 | 9 | 880 | 16 | 885 | 0.0 | 1753 |
| MS.gene56013.t1 | MTR_2g034560 | 98.871 | 620 | 7 | 0 | 9 | 628 | 16 | 635 | 0.0 | 1267 |
| MS.gene56013.t1 | MTR_4g121890 | 72.654 | 874 | 229 | 6 | 9 | 880 | 16 | 881 | 0.0 | 1267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56013.t1 | AT3G06670 | 65.183 | 876 | 275 | 10 | 9 | 880 | 16 | 865 | 0.0 | 1103 |
| MS.gene56013.t1 | AT3G06670 | 63.657 | 897 | 275 | 11 | 9 | 880 | 16 | 886 | 0.0 | 1090 |
| MS.gene56013.t1 | AT5G49390 | 52.752 | 654 | 284 | 9 | 9 | 656 | 12 | 646 | 0.0 | 661 |
| MS.gene56013.t1 | AT5G49390 | 59.006 | 322 | 128 | 2 | 9 | 329 | 12 | 330 | 2.54e-130 | 395 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAATGGTAACAGATTT+TGG | 0.089946 | 2.3:+56264617 | MS.gene56013:CDS |
| GCTAGTGAAATTTGAGAATT+TGG | 0.119784 | 2.3:+56266790 | MS.gene56013:CDS |
| CTGCGAGCCATTCAGATTTA+AGG | 0.133273 | 2.3:+56267241 | MS.gene56013:CDS |
| GCTTTGTCCCACTGTGATTT+TGG | 0.203108 | 2.3:-56265080 | None:intergenic |
| TCCTTTGCACGTTGCAAATA+TGG | 0.236602 | 2.3:-56256929 | None:intergenic |
| GACAAGAAGCTTGTGCTTAC+TGG | 0.241344 | 2.3:+56263937 | MS.gene56013:CDS |
| TTGTGAGGATTTGGAAAATA+TGG | 0.251673 | 2.3:+56260210 | MS.gene56013:CDS |
| GGCCATCTCTGGCGAGGATT+TGG | 0.255382 | 2.3:-56267845 | None:intergenic |
| ATACATCAAACATATAAAAT+TGG | 0.264422 | 2.3:+56260772 | MS.gene56013:CDS |
| TTAGACTCATCTACATTGTC+TGG | 0.266676 | 2.3:+56264683 | MS.gene56013:CDS |
| CATATATAGTTGATTCGTTC+TGG | 0.267081 | 2.3:+56266762 | MS.gene56013:CDS |
| ACATCATCGTGAGTTCTTAA+AGG | 0.274131 | 2.3:+56260587 | MS.gene56013:CDS |
| ATTCAGAGTTTGTGAGGATT+TGG | 0.277374 | 2.3:+56260201 | MS.gene56013:CDS |
| GCTATCTCAGTGGCATATTC+TGG | 0.281183 | 2.3:-56256761 | None:intergenic |
| TCGCCAGAGATGGCCGTTAA+AGG | 0.294556 | 2.3:+56267853 | MS.gene56013:CDS |
| CAGGAAGGAGTCACACTTCT+TGG | 0.295504 | 2.3:+56264127 | MS.gene56013:CDS |
| GAAGCTTCTGGCTGCTTCCT+TGG | 0.298496 | 2.3:-56267412 | None:intergenic |
| TCATCCTCTTCAGAAGCTTC+TGG | 0.313703 | 2.3:-56267424 | None:intergenic |
| CAACAAGGAAATACTTTATT+CGG | 0.325362 | 2.3:-56265161 | None:intergenic |
| AAGATGACAATGCATTTATT+CGG | 0.334459 | 2.3:+56261132 | MS.gene56013:CDS |
| GTTTAGTGATGAGTTTATAA+TGG | 0.335598 | 2.3:+56260399 | MS.gene56013:CDS |
| TCAAATGGCACTACAGATAA+TGG | 0.337668 | 2.3:+56267787 | MS.gene56013:CDS |
| CAGTCCGAGGTCTGGTGGAC+TGG | 0.338690 | 2.3:+56267345 | MS.gene56013:intron |
| ATTCATTGTATGTAGAGATA+TGG | 0.341344 | 2.3:+56263867 | MS.gene56013:intron |
| AACGCTTCCATTGATTCTTA+AGG | 0.353098 | 2.3:+56257666 | MS.gene56013:CDS |
| ATCTGGTTGTTGGTGCTATT+CGG | 0.354021 | 2.3:+56265324 | MS.gene56013:CDS |
| CTTTAGATACAATTATTTCA+TGG | 0.357717 | 2.3:+56256732 | MS.gene56013:intron |
| AGGAAATACTTTATTCGGTA+TGG | 0.362237 | 2.3:-56265156 | None:intergenic |
| GCCATCTCTGGCGAGGATTT+GGG | 0.366834 | 2.3:-56267844 | None:intergenic |
| AAATGGGACGACCAGGGCAC+TGG | 0.368782 | 2.3:+56255999 | MS.gene56013:CDS |
| TGTCACTGTTGATTATTTAG+AGG | 0.386164 | 2.3:+56256025 | MS.gene56013:CDS |
| AGATGACAATGCATTTATTC+GGG | 0.397204 | 2.3:+56261133 | MS.gene56013:CDS |
| TGCGAAGAATCTCAAGAAAC+TGG | 0.399221 | 2.3:-56264655 | None:intergenic |
| CATATGTTCAATAGAATCTC+TGG | 0.401225 | 2.3:-56265102 | None:intergenic |
| GAGTTTATAATGGACATAAT+TGG | 0.403584 | 2.3:+56260409 | MS.gene56013:CDS |
| CTTGTGTTCAACTTTGAGCC+AGG | 0.406621 | 2.3:+56267567 | MS.gene56013:CDS |
| GTAGACGTCTTCGTTGCTAA+TGG | 0.435341 | 2.3:+56266354 | MS.gene56013:CDS |
| GTCTGAATGATGATGGGAAA+TGG | 0.435675 | 2.3:+56255982 | MS.gene56013:CDS |
| ATCTACATTGTCTGGGGCAC+AGG | 0.437317 | 2.3:+56264691 | MS.gene56013:CDS |
| GAACCTTTAACGGCCATCTC+TGG | 0.438703 | 2.3:-56267856 | None:intergenic |
| AAAGTTGCCTTTGAAGGATA+AGG | 0.439053 | 2.3:+56267477 | MS.gene56013:CDS |
| ACATAGGATCGGAGAAGATT+AGG | 0.439062 | 2.3:-56264097 | None:intergenic |
| ATCCAAACCTTAAGAATCAA+TGG | 0.439199 | 2.3:-56257673 | None:intergenic |
| AACTTCTCTGATGGATCAAA+TGG | 0.442604 | 2.3:+56267772 | MS.gene56013:CDS |
| AGTGGTGATCAGACAATTGA+TGG | 0.447983 | 2.3:+56267628 | MS.gene56013:CDS |
| TTTGATTCAGGAGAGGTAGT+TGG | 0.450221 | 2.3:-56261179 | None:intergenic |
| TCTGGCTGCTTCCTTGGTGG+TGG | 0.450716 | 2.3:-56267406 | None:intergenic |
| ATATATAGTTGATTCGTTCT+GGG | 0.461272 | 2.3:+56266763 | MS.gene56013:CDS |
| GTCTACCGTCTGAATGATGA+TGG | 0.468529 | 2.3:+56255975 | MS.gene56013:CDS |
| TAGACTCATCTACATTGTCT+GGG | 0.473295 | 2.3:+56264684 | MS.gene56013:CDS |
| TGTGGTCGAGAGTGGCATTA+CGG | 0.473303 | 2.3:+56259279 | MS.gene56013:CDS |
| GGGTGGCGAGGAACATTCAC+TGG | 0.474514 | 2.3:+56267816 | MS.gene56013:CDS |
| ATGGAAAAGAAAACAAATGA+TGG | 0.474979 | 2.3:+56255709 | MS.gene56013:CDS |
| ATGGCTCGCAGCAGCTCCAT+TGG | 0.477439 | 2.3:-56267229 | None:intergenic |
| GATCCATCAGAGAAGTTCCT+AGG | 0.478278 | 2.3:-56267766 | None:intergenic |
| CAGTGTAAACAGTGAGTTGA+GGG | 0.479328 | 2.3:+56257621 | MS.gene56013:CDS |
| CACTACAGATAATGGACAGT+TGG | 0.485197 | 2.3:+56267795 | MS.gene56013:CDS |
| AATGGGACGACCAGGGCACT+GGG | 0.489252 | 2.3:+56256000 | MS.gene56013:CDS |
| CAGTGACATGCCCAGTGCCC+TGG | 0.492399 | 2.3:-56256010 | None:intergenic |
| AAGTATACCTTAAATCTGAA+TGG | 0.493670 | 2.3:-56267248 | None:intergenic |
| TTGGATAATGATGGGACAAA+AGG | 0.494132 | 2.3:+56266955 | MS.gene56013:CDS |
| TTGCAGTGTTTGGATAATGA+TGG | 0.496771 | 2.3:+56266946 | MS.gene56013:intron |
| TGAAGAGGATGAAGGGGCAT+TGG | 0.499375 | 2.3:+56267435 | MS.gene56013:CDS |
| TGATGGGAAATGGGACGACC+AGG | 0.501263 | 2.3:+56255992 | MS.gene56013:CDS |
| AATGCAGCGATCAGAAGAGC+TGG | 0.501408 | 2.3:+56256450 | MS.gene56013:intron |
| ACAAGAAGCTTGTGCTTACT+GGG | 0.502874 | 2.3:+56263938 | MS.gene56013:CDS |
| TCTTACCAGGTAGTACAGCC+TGG | 0.504519 | 2.3:-56267585 | None:intergenic |
| ACCATATTTGCAACGTGCAA+AGG | 0.505363 | 2.3:+56256928 | MS.gene56013:CDS |
| ATCGGAGAAGATTAGGATCC+TGG | 0.505731 | 2.3:-56264090 | None:intergenic |
| GCTTCTGGCTGCTTCCTTGG+TGG | 0.507961 | 2.3:-56267409 | None:intergenic |
| AAGGGGCATTGGAGTTGCTC+GGG | 0.510108 | 2.3:+56267446 | MS.gene56013:CDS |
| GGAAATACTTTATTCGGTAT+GGG | 0.512152 | 2.3:-56265155 | None:intergenic |
| GAAGCTTCTGAAGAGGATGA+AGG | 0.512916 | 2.3:+56267427 | MS.gene56013:CDS |
| TGTTGAGCATGAGGAACCTC+TGG | 0.513659 | 2.3:-56260567 | None:intergenic |
| CTGGTGGATGCTCTTACATA+TGG | 0.513775 | 2.3:+56256801 | MS.gene56013:CDS |
| GAAACGAAAGTTGCCTTTGA+AGG | 0.515256 | 2.3:+56267471 | MS.gene56013:CDS |
| GAAGGGGCATTGGAGTTGCT+CGG | 0.520507 | 2.3:+56267445 | MS.gene56013:CDS |
| TCTATTTCACGTCATCAGAA+AGG | 0.523021 | 2.3:+56267171 | MS.gene56013:CDS |
| ATGTAGAGATATGGTAAATG+AGG | 0.525319 | 2.3:+56263876 | MS.gene56013:intron |
| AGCGTTGATAATTCAACTGC+AGG | 0.526021 | 2.3:-56257649 | None:intergenic |
| CCGATCCTATGTGGTTCGAC+AGG | 0.526655 | 2.3:+56264108 | MS.gene56013:CDS |
| CAGCCGCAGGTGTTATCCAA+TGG | 0.529581 | 2.3:+56267213 | MS.gene56013:CDS |
| ACTACAGATAATGGACAGTT+GGG | 0.531174 | 2.3:+56267796 | MS.gene56013:CDS |
| TGATCTTCGAAGACGAATTG+AGG | 0.531365 | 2.3:+56266990 | MS.gene56013:CDS |
| ACTGAAAGTAAAATATGAGC+AGG | 0.532728 | 2.3:+56266826 | MS.gene56013:CDS |
| TCTCATTCTCTTCTTGAACC+AGG | 0.536788 | 2.3:+56264072 | MS.gene56013:CDS |
| CTATTTCACGTCATCAGAAA+GGG | 0.538741 | 2.3:+56267172 | MS.gene56013:CDS |
| GTCTTCACTTTGCAAGACAT+CGG | 0.538851 | 2.3:-56263917 | None:intergenic |
| TCCTATGTGGTTCGACAGGA+AGG | 0.542415 | 2.3:+56264112 | MS.gene56013:CDS |
| TAATGCACAGGTTAGAGGAA+TGG | 0.545419 | 2.3:+56264604 | MS.gene56013:intron |
| ACCCAAATCCTCGCCAGAGA+TGG | 0.545536 | 2.3:+56267843 | MS.gene56013:CDS |
| TCTGAATGATGATGGGAAAT+GGG | 0.547136 | 2.3:+56255983 | MS.gene56013:CDS |
| AAGCTTCTGAAGAGGATGAA+GGG | 0.547806 | 2.3:+56267428 | MS.gene56013:CDS |
| TTGAGCCAGGCTGTACTACC+TGG | 0.549927 | 2.3:+56267580 | MS.gene56013:CDS |
| AGTCACACTTCTTGGACTGT+TGG | 0.551695 | 2.3:+56264135 | MS.gene56013:CDS |
| AAGACTACTTTAATGAGGAC+AGG | 0.553279 | 2.3:+56267037 | MS.gene56013:CDS |
| CATATGTAAGAGCATCCACC+AGG | 0.555331 | 2.3:-56256800 | None:intergenic |
| GCTTACATGACGAGAGAGAA+TGG | 0.557195 | 2.3:-56265357 | None:intergenic |
| ACACCTAGGAACTTCTCTGA+TGG | 0.557276 | 2.3:+56267763 | MS.gene56013:CDS |
| TTATTCGGGAGTTCTTTGCT+AGG | 0.557818 | 2.3:+56261147 | MS.gene56013:CDS |
| TGTAGAGATATGGTAAATGA+GGG | 0.568011 | 2.3:+56263877 | MS.gene56013:intron |
| TCTGTCACCTTATCCTTCAA+AGG | 0.573333 | 2.3:-56267484 | None:intergenic |
| ACTGCAATCAACGATCATAG+TGG | 0.575561 | 2.3:+56267610 | MS.gene56013:CDS |
| GATATTTACCGAAAACAAGA+AGG | 0.575917 | 2.3:+56256535 | MS.gene56013:CDS |
| TGAAGTATTCAGAGTTTGTG+AGG | 0.580756 | 2.3:+56260195 | MS.gene56013:CDS |
| AGTCGAAGCTGCTGTACCAT+CGG | 0.580806 | 2.3:-56263284 | None:intergenic |
| TATTGAATTTCAGCGTGTCA+AGG | 0.584586 | 2.3:+56255953 | MS.gene56013:intron |
| AGCTTCTGAAGAGGATGAAG+GGG | 0.586384 | 2.3:+56267429 | MS.gene56013:CDS |
| CGTCTACAAGTGGTTTGAGA+AGG | 0.587407 | 2.3:-56266338 | None:intergenic |
| GCACTAAGCTTTCAAGAACC+TGG | 0.588094 | 2.3:+56256782 | MS.gene56013:CDS |
| CTGGCTCAAAGTTGAACACA+AGG | 0.592116 | 2.3:-56267566 | None:intergenic |
| TAATGGACAGTTGGGTGGCG+AGG | 0.593874 | 2.3:+56267804 | MS.gene56013:CDS |
| GCGTGCTTTAGAGAAAGAAG+AGG | 0.597626 | 2.3:+56267014 | MS.gene56013:CDS |
| AAATATGGATGGCCTTCACA+TGG | 0.603238 | 2.3:+56260225 | MS.gene56013:CDS |
| TCACAGACTGTGGTCGAGAG+TGG | 0.609056 | 2.3:+56259271 | MS.gene56013:intron |
| TGCAGTGTTTGGATAATGAT+GGG | 0.611909 | 2.3:+56266947 | MS.gene56013:intron |
| ATTTCCCATCATCATTCAGA+CGG | 0.612029 | 2.3:-56255980 | None:intergenic |
| AGAGGAAGACTACTTTAATG+AGG | 0.614213 | 2.3:+56267032 | MS.gene56013:CDS |
| ATGCAGCGATCAGAAGAGCT+GGG | 0.617284 | 2.3:+56256451 | MS.gene56013:intron |
| GCAGCCAGAAGCTTCTGAAG+AGG | 0.617982 | 2.3:+56267420 | MS.gene56013:CDS |
| TCACGATGATGTTGAGCATG+AGG | 0.622085 | 2.3:-56260576 | None:intergenic |
| AGACTCATCTACATTGTCTG+GGG | 0.623551 | 2.3:+56264685 | MS.gene56013:CDS |
| GCAACGAAGACGTCTACAAG+TGG | 0.625269 | 2.3:-56266348 | None:intergenic |
| TAATCTTCTCCGATCCTATG+TGG | 0.631233 | 2.3:+56264099 | MS.gene56013:CDS |
| ACAGATAATGGACAGTTGGG+TGG | 0.631479 | 2.3:+56267799 | MS.gene56013:CDS |
| AATACTTTATTCGGTATGGG+TGG | 0.635180 | 2.3:-56265152 | None:intergenic |
| GAGGATTTGGAAAATATGGA+TGG | 0.636956 | 2.3:+56260214 | MS.gene56013:CDS |
| TTTAACGGCCATCTCTGGCG+AGG | 0.637022 | 2.3:-56267851 | None:intergenic |
| CCTGTCGAACCACATAGGAT+CGG | 0.642665 | 2.3:-56264108 | None:intergenic |
| TCCTTCCTGTCGAACCACAT+AGG | 0.644277 | 2.3:-56264113 | None:intergenic |
| AAGGAGACCAAAATCACAGT+GGG | 0.645129 | 2.3:+56265073 | MS.gene56013:CDS |
| GTGGTGATCAGACAATTGAT+GGG | 0.645553 | 2.3:+56267629 | MS.gene56013:CDS |
| TCTACCGTCTGAATGATGAT+GGG | 0.646554 | 2.3:+56255976 | MS.gene56013:CDS |
| CTAAGCTTTCAAGAACCTGG+TGG | 0.648285 | 2.3:+56256785 | MS.gene56013:CDS |
| AGAAAGAAACTGATACACCT+AGG | 0.653012 | 2.3:+56267749 | MS.gene56013:CDS |
| GTGGTTAATCAGTGATGATG+AGG | 0.661299 | 2.3:+56267134 | MS.gene56013:intron |
| TCAACCAGTCCACCAGACCT+CGG | 0.662473 | 2.3:-56267349 | None:intergenic |
| TTTAAGCAAGAGCTTACCGA+TGG | 0.664154 | 2.3:+56263268 | MS.gene56013:CDS |
| TGTTACTTCAGATAATCCAG+AGG | 0.664243 | 2.3:+56260551 | MS.gene56013:intron |
| ATGACGTGAAATAGACGTAG+AGG | 0.669697 | 2.3:-56267163 | None:intergenic |
| GATGGGAAATGGGACGACCA+GGG | 0.670847 | 2.3:+56255993 | MS.gene56013:CDS |
| GGTTGACTATGATGATGATG+AGG | 0.676866 | 2.3:+56267366 | MS.gene56013:CDS |
| ACAGTGTAAACAGTGAGTTG+AGG | 0.684304 | 2.3:+56257620 | MS.gene56013:CDS |
| AAATTCGTAGACCCTGACAA+AGG | 0.693878 | 2.3:+56265054 | MS.gene56013:CDS |
| AAGATTACAAGCCACCACCA+AGG | 0.706833 | 2.3:+56267395 | MS.gene56013:CDS |
| AAAGCTTAGTGCTATCTCAG+TGG | 0.717675 | 2.3:-56256771 | None:intergenic |
| GTGATCAGACAATTGATGGG+AGG | 0.730068 | 2.3:+56267632 | MS.gene56013:CDS |
| TTTGACTAGAGTATTAGACG+AGG | 0.738222 | 2.3:+56260958 | MS.gene56013:CDS |
| GCTCCATTGGATAACACCTG+CGG | 0.747283 | 2.3:-56267216 | None:intergenic |
| AAAGGAGACCAAAATCACAG+TGG | 0.758419 | 2.3:+56265072 | MS.gene56013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 56255709 | 56267882 | 56255709 | ID=MS.gene56013 |
| chr2.3 | mRNA | 56255709 | 56267882 | 56255709 | ID=MS.gene56013.t1;Parent=MS.gene56013 |
| chr2.3 | exon | 56255709 | 56255732 | 56255709 | ID=MS.gene56013.t1.exon1;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56255709 | 56255732 | 56255709 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56255966 | 56256046 | 56255966 | ID=MS.gene56013.t1.exon2;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56255966 | 56256046 | 56255966 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56256457 | 56256556 | 56256457 | ID=MS.gene56013.t1.exon3;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56256457 | 56256556 | 56256457 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56256738 | 56256822 | 56256738 | ID=MS.gene56013.t1.exon4;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56256738 | 56256822 | 56256738 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56256926 | 56256975 | 56256926 | ID=MS.gene56013.t1.exon5;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56256926 | 56256975 | 56256926 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56257608 | 56257687 | 56257608 | ID=MS.gene56013.t1.exon6;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56257608 | 56257687 | 56257608 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56259277 | 56259336 | 56259277 | ID=MS.gene56013.t1.exon7;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56259277 | 56259336 | 56259277 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56260172 | 56260271 | 56260172 | ID=MS.gene56013.t1.exon8;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56260172 | 56260271 | 56260172 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56260365 | 56260442 | 56260365 | ID=MS.gene56013.t1.exon9;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56260365 | 56260442 | 56260365 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56260562 | 56260629 | 56260562 | ID=MS.gene56013.t1.exon10;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56260562 | 56260629 | 56260562 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56260736 | 56260804 | 56260736 | ID=MS.gene56013.t1.exon11;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56260736 | 56260804 | 56260736 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56260950 | 56261027 | 56260950 | ID=MS.gene56013.t1.exon12;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56260950 | 56261027 | 56260950 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56261116 | 56261211 | 56261116 | ID=MS.gene56013.t1.exon13;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56261116 | 56261211 | 56261116 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56263242 | 56263312 | 56263242 | ID=MS.gene56013.t1.exon14;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56263242 | 56263312 | 56263242 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56263882 | 56263959 | 56263882 | ID=MS.gene56013.t1.exon15;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56263882 | 56263959 | 56263882 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56264063 | 56264156 | 56264063 | ID=MS.gene56013.t1.exon16;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56264063 | 56264156 | 56264063 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56264614 | 56264712 | 56264614 | ID=MS.gene56013.t1.exon17;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56264614 | 56264712 | 56264614 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56264952 | 56265169 | 56264952 | ID=MS.gene56013.t1.exon18;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56264952 | 56265169 | 56264952 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56265259 | 56265373 | 56265259 | ID=MS.gene56013.t1.exon19;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56265259 | 56265373 | 56265259 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56266303 | 56266434 | 56266303 | ID=MS.gene56013.t1.exon20;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56266303 | 56266434 | 56266303 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56266740 | 56266847 | 56266740 | ID=MS.gene56013.t1.exon21;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56266740 | 56266847 | 56266740 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56266952 | 56267058 | 56266952 | ID=MS.gene56013.t1.exon22;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56266952 | 56267058 | 56266952 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56267146 | 56267262 | 56267146 | ID=MS.gene56013.t1.exon23;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56267146 | 56267262 | 56267146 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| chr2.3 | exon | 56267348 | 56267882 | 56267348 | ID=MS.gene56013.t1.exon24;Parent=MS.gene56013.t1 |
| chr2.3 | CDS | 56267348 | 56267882 | 56267348 | ID=cds.MS.gene56013.t1;Parent=MS.gene56013.t1 |
| Gene Sequence |
| Protein sequence |
