Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56755.t1 | XP_013450895.2 | 90.8 | 433 | 38 | 1 | 42 | 474 | 37 | 467 | 7.10E-218 | 766.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56755.t1 | Q9LFQ3 | 52.4 | 473 | 166 | 8 | 2 | 425 | 14 | 476 | 1.3e-114 | 414.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56755.t1 | A0A396HB94 | 90.8 | 433 | 38 | 1 | 42 | 474 | 37 | 467 | 5.1e-218 | 766.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene56755.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene56755 | 0.838742 | 2.40E-57 | -1.69E-46 |
MS.gene049404 | MS.gene56755 | 0.808033 | 3.78E-50 | -1.69E-46 |
MS.gene049977 | MS.gene56755 | 0.800328 | 1.52E-48 | -1.69E-46 |
MS.gene050201 | MS.gene56755 | 0.811527 | 6.70E-51 | -1.69E-46 |
MS.gene050750 | MS.gene56755 | 0.810817 | 9.54E-51 | -1.69E-46 |
MS.gene050953 | MS.gene56755 | 0.80111 | 1.05E-48 | -1.69E-46 |
MS.gene051198 | MS.gene56755 | 0.801739 | 7.81E-49 | -1.69E-46 |
MS.gene051247 | MS.gene56755 | 0.810418 | 1.16E-50 | -1.69E-46 |
MS.gene052239 | MS.gene56755 | -0.800871 | 1.18E-48 | -1.69E-46 |
MS.gene052447 | MS.gene56755 | 0.823388 | 1.42E-53 | -1.69E-46 |
MS.gene052582 | MS.gene56755 | 0.808491 | 3.02E-50 | -1.69E-46 |
MS.gene052584 | MS.gene56755 | 0.816683 | 4.87E-52 | -1.69E-46 |
MS.gene053079 | MS.gene56755 | 0.804916 | 1.72E-49 | -1.69E-46 |
MS.gene05415 | MS.gene56755 | 0.840711 | 7.38E-58 | -1.69E-46 |
MS.gene054291 | MS.gene56755 | -0.808265 | 3.37E-50 | -1.69E-46 |
MS.gene054576 | MS.gene56755 | 0.820125 | 8.09E-53 | -1.69E-46 |
MS.gene054775 | MS.gene56755 | 0.807561 | 4.76E-50 | -1.69E-46 |
MS.gene05604 | MS.gene56755 | 0.80446 | 2.14E-49 | -1.69E-46 |
MS.gene056050 | MS.gene56755 | 0.80423 | 2.39E-49 | -1.69E-46 |
MS.gene056272 | MS.gene56755 | 0.803724 | 3.04E-49 | -1.69E-46 |
MS.gene056776 | MS.gene56755 | 0.817968 | 2.50E-52 | -1.69E-46 |
MS.gene057026 | MS.gene56755 | 0.801623 | 8.25E-49 | -1.69E-46 |
MS.gene057060 | MS.gene56755 | 0.801537 | 8.59E-49 | -1.69E-46 |
MS.gene057414 | MS.gene56755 | 0.821479 | 3.95E-53 | -1.69E-46 |
MS.gene057444 | MS.gene56755 | 0.835105 | 2.04E-56 | -1.69E-46 |
MS.gene058979 | MS.gene56755 | 0.80164 | 8.19E-49 | -1.69E-46 |
MS.gene059625 | MS.gene56755 | 0.826629 | 2.44E-54 | -1.69E-46 |
MS.gene060365 | MS.gene56755 | 0.821448 | 4.02E-53 | -1.69E-46 |
MS.gene060373 | MS.gene56755 | 0.812072 | 5.10E-51 | -1.69E-46 |
MS.gene060572 | MS.gene56755 | 0.821208 | 4.56E-53 | -1.69E-46 |
MS.gene060634 | MS.gene56755 | -0.825033 | 5.84E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56755.t1 | MTR_6g008995 | 91.803 | 427 | 33 | 1 | 38 | 464 | 27 | 451 | 0.0 | 801 |
MS.gene56755.t1 | MTR_6g008995 | 90.663 | 407 | 36 | 1 | 69 | 475 | 1 | 405 | 0.0 | 754 |
MS.gene56755.t1 | MTR_6g008970 | 67.925 | 477 | 93 | 7 | 2 | 425 | 15 | 484 | 0.0 | 568 |
MS.gene56755.t1 | MTR_8g062700 | 43.281 | 506 | 185 | 12 | 2 | 423 | 13 | 500 | 3.39e-103 | 336 |
MS.gene56755.t1 | MTR_8g062700 | 43.281 | 506 | 184 | 13 | 2 | 423 | 13 | 499 | 1.55e-101 | 332 |
MS.gene56755.t1 | MTR_5g036670 | 41.502 | 506 | 189 | 14 | 2 | 423 | 14 | 496 | 2.86e-88 | 295 |
MS.gene56755.t1 | MTR_7g013410 | 43.151 | 146 | 74 | 3 | 52 | 194 | 2 | 141 | 8.28e-34 | 124 |
MS.gene56755.t1 | MTR_8g062350 | 38.144 | 194 | 79 | 4 | 42 | 194 | 8 | 201 | 5.86e-31 | 119 |
MS.gene56755.t1 | MTR_1g105955 | 41.830 | 153 | 83 | 2 | 43 | 194 | 10 | 157 | 4.86e-28 | 110 |
MS.gene56755.t1 | MTR_1g104960 | 36.667 | 150 | 93 | 2 | 48 | 195 | 13 | 162 | 4.13e-24 | 99.4 |
MS.gene56755.t1 | MTR_1g104960 | 45.833 | 72 | 39 | 0 | 49 | 120 | 100 | 171 | 2.29e-15 | 74.3 |
MS.gene56755.t1 | MTR_3g006125 | 39.752 | 161 | 89 | 3 | 42 | 194 | 83 | 243 | 3.27e-23 | 99.0 |
MS.gene56755.t1 | MTR_3g006125 | 50.667 | 75 | 36 | 1 | 42 | 115 | 174 | 248 | 1.37e-16 | 80.1 |
MS.gene56755.t1 | MTR_3g006105 | 39.375 | 160 | 89 | 4 | 42 | 193 | 2 | 161 | 9.00e-23 | 95.9 |
MS.gene56755.t1 | MTR_3g006105 | 45.333 | 75 | 40 | 1 | 42 | 115 | 93 | 167 | 1.48e-11 | 63.5 |
MS.gene56755.t1 | MTR_1g105960 | 53.659 | 82 | 38 | 0 | 49 | 130 | 2 | 83 | 2.97e-22 | 92.0 |
MS.gene56755.t1 | MTR_3g006150 | 38.608 | 158 | 86 | 4 | 42 | 194 | 2 | 153 | 3.07e-22 | 93.6 |
MS.gene56755.t1 | MTR_3g006150 | 57.534 | 73 | 30 | 1 | 42 | 113 | 84 | 156 | 8.96e-19 | 83.6 |
MS.gene56755.t1 | MTR_4g133300 | 40.541 | 148 | 81 | 2 | 48 | 195 | 12 | 152 | 1.23e-21 | 94.4 |
MS.gene56755.t1 | MTR_4g133300 | 35.484 | 155 | 95 | 3 | 43 | 195 | 84 | 235 | 1.52e-17 | 82.4 |
MS.gene56755.t1 | MTR_4g133300 | 59.701 | 67 | 27 | 0 | 51 | 117 | 175 | 241 | 7.05e-17 | 80.5 |
MS.gene56755.t1 | MTR_3g006065 | 36.585 | 164 | 96 | 4 | 42 | 200 | 2 | 162 | 2.21e-21 | 92.0 |
MS.gene56755.t1 | MTR_3g006065 | 53.488 | 86 | 35 | 3 | 42 | 122 | 84 | 169 | 8.99e-18 | 81.6 |
MS.gene56755.t1 | MTR_3g006185 | 37.647 | 170 | 98 | 4 | 42 | 203 | 2 | 171 | 5.34e-21 | 90.5 |
MS.gene56755.t1 | MTR_4g133470 | 39.189 | 148 | 83 | 2 | 48 | 195 | 12 | 152 | 2.28e-20 | 90.9 |
MS.gene56755.t1 | MTR_4g133470 | 59.701 | 67 | 27 | 0 | 51 | 117 | 175 | 241 | 5.67e-17 | 80.9 |
MS.gene56755.t1 | MTR_4g133470 | 34.416 | 154 | 98 | 2 | 43 | 195 | 84 | 235 | 2.31e-16 | 79.3 |
MS.gene56755.t1 | MTR_1g104940 | 48.837 | 86 | 43 | 1 | 48 | 132 | 14 | 99 | 2.67e-18 | 81.3 |
MS.gene56755.t1 | MTR_7g013380 | 32.237 | 152 | 99 | 2 | 48 | 195 | 99 | 250 | 1.83e-17 | 83.2 |
MS.gene56755.t1 | MTR_7g013380 | 31.138 | 167 | 109 | 3 | 49 | 209 | 14 | 180 | 2.40e-15 | 77.0 |
MS.gene56755.t1 | MTR_8g469180 | 37.302 | 126 | 75 | 1 | 235 | 356 | 64 | 189 | 1.89e-17 | 83.2 |
MS.gene56755.t1 | MTR_8g469180 | 38.298 | 94 | 58 | 0 | 278 | 371 | 192 | 285 | 5.26e-14 | 72.8 |
MS.gene56755.t1 | MTR_5g036790 | 48.750 | 80 | 33 | 1 | 123 | 194 | 3 | 82 | 1.02e-16 | 75.5 |
MS.gene56755.t1 | MTR_1g109550 | 35.338 | 133 | 78 | 2 | 48 | 180 | 16 | 140 | 4.97e-16 | 75.5 |
MS.gene56755.t1 | MTR_1g104980 | 31.507 | 146 | 87 | 1 | 50 | 195 | 1 | 133 | 2.69e-15 | 74.3 |
MS.gene56755.t1 | MTR_1g104937 | 42.308 | 78 | 45 | 0 | 48 | 125 | 12 | 89 | 1.87e-14 | 70.1 |
MS.gene56755.t1 | MTR_1g105010 | 38.824 | 85 | 52 | 0 | 37 | 121 | 5 | 89 | 3.75e-14 | 69.3 |
MS.gene56755.t1 | MTR_2g097830 | 39.423 | 104 | 56 | 2 | 48 | 151 | 70 | 166 | 3.95e-13 | 67.8 |
MS.gene56755.t1 | MTR_1g093310 | 47.143 | 70 | 31 | 1 | 48 | 117 | 9 | 72 | 1.80e-11 | 60.5 |
MS.gene56755.t1 | MTR_7g089490 | 47.692 | 65 | 34 | 0 | 48 | 112 | 16 | 80 | 6.94e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56755.t1 | AT5G15020 | 54.123 | 473 | 158 | 8 | 2 | 425 | 14 | 476 | 2.05e-142 | 442 |
MS.gene56755.t1 | AT5G15020 | 54.123 | 473 | 158 | 8 | 2 | 425 | 14 | 476 | 2.09e-142 | 442 |
MS.gene56755.t1 | AT3G01320 | 53.390 | 472 | 168 | 10 | 2 | 425 | 14 | 481 | 6.21e-136 | 425 |
MS.gene56755.t1 | AT3G01320 | 51.907 | 472 | 163 | 11 | 2 | 425 | 14 | 469 | 1.97e-129 | 407 |
MS.gene56755.t1 | AT1G24190 | 43.736 | 439 | 191 | 12 | 34 | 423 | 3 | 434 | 5.07e-97 | 319 |
MS.gene56755.t1 | AT1G24190 | 43.736 | 439 | 191 | 12 | 34 | 423 | 3 | 434 | 5.80e-97 | 318 |
MS.gene56755.t1 | AT1G24190 | 43.115 | 443 | 192 | 13 | 34 | 423 | 3 | 438 | 9.89e-94 | 310 |
MS.gene56755.t1 | AT1G70060 | 41.685 | 451 | 198 | 8 | 37 | 423 | 3 | 452 | 1.99e-89 | 298 |
MS.gene56755.t1 | AT1G70060 | 41.685 | 451 | 198 | 8 | 37 | 423 | 3 | 452 | 1.99e-89 | 298 |
MS.gene56755.t1 | AT1G10450 | 56.044 | 182 | 74 | 3 | 31 | 210 | 19 | 196 | 3.09e-52 | 190 |
MS.gene56755.t1 | AT1G10450 | 56.044 | 182 | 74 | 3 | 31 | 210 | 19 | 196 | 3.09e-52 | 190 |
MS.gene56755.t1 | AT1G10450 | 55.249 | 181 | 77 | 2 | 31 | 210 | 70 | 247 | 3.61e-52 | 190 |
MS.gene56755.t1 | AT1G24200 | 50.505 | 198 | 93 | 3 | 34 | 230 | 3 | 196 | 7.20e-52 | 174 |
MS.gene56755.t1 | AT1G59890 | 63.333 | 150 | 53 | 2 | 47 | 195 | 44 | 192 | 1.42e-51 | 189 |
MS.gene56755.t1 | AT1G59890 | 63.333 | 150 | 53 | 2 | 47 | 195 | 44 | 192 | 1.43e-51 | 188 |
MS.gene56755.t1 | AT1G59890 | 63.333 | 150 | 53 | 2 | 47 | 195 | 44 | 192 | 1.49e-51 | 188 |
MS.gene56755.t1 | AT1G59890 | 63.333 | 150 | 53 | 2 | 47 | 195 | 44 | 192 | 1.99e-51 | 188 |
MS.gene56755.t1 | AT1G70030 | 50.649 | 154 | 74 | 2 | 42 | 194 | 5 | 157 | 2.23e-44 | 153 |
MS.gene56755.t1 | AT1G70030 | 41.558 | 154 | 56 | 2 | 42 | 194 | 16 | 136 | 1.38e-27 | 107 |
MS.gene56755.t1 | AT5G15025 | 49.153 | 118 | 46 | 2 | 4 | 121 | 17 | 120 | 1.41e-26 | 104 |
MS.gene56755.t1 | AT5G35610 | 41.781 | 146 | 68 | 3 | 43 | 175 | 5 | 146 | 9.69e-26 | 103 |
MS.gene56755.t1 | AT1G24230 | 37.241 | 145 | 86 | 3 | 48 | 190 | 86 | 227 | 2.64e-25 | 104 |
MS.gene56755.t1 | AT1G24230 | 32.704 | 159 | 92 | 3 | 36 | 193 | 3 | 147 | 2.92e-18 | 84.7 |
MS.gene56755.t1 | AT1G70030 | 49.057 | 106 | 53 | 1 | 42 | 146 | 16 | 121 | 1.19e-24 | 99.4 |
MS.gene56755.t1 | AT1G23810 | 36.095 | 169 | 81 | 4 | 37 | 203 | 97 | 240 | 3.61e-22 | 95.9 |
MS.gene56755.t1 | AT1G24250 | 37.888 | 161 | 77 | 3 | 37 | 195 | 108 | 247 | 4.25e-22 | 95.9 |
MS.gene56755.t1 | AT1G27280 | 33.908 | 174 | 97 | 6 | 22 | 183 | 56 | 223 | 4.90e-22 | 94.7 |
MS.gene56755.t1 | AT1G27260 | 34.177 | 158 | 82 | 2 | 37 | 193 | 82 | 218 | 1.72e-20 | 90.5 |
MS.gene56755.t1 | AT1G27260 | 29.412 | 153 | 98 | 2 | 49 | 193 | 4 | 154 | 5.55e-15 | 74.7 |
MS.gene56755.t1 | AT5G15040 | 52.857 | 70 | 33 | 0 | 51 | 120 | 6 | 75 | 1.36e-18 | 80.9 |
MS.gene56755.t1 | AT5G15040 | 52.857 | 70 | 33 | 0 | 51 | 120 | 6 | 75 | 1.36e-18 | 80.9 |
MS.gene56755.t1 | AT5G15040 | 52.857 | 70 | 33 | 0 | 51 | 120 | 6 | 75 | 1.36e-18 | 80.9 |
MS.gene56755.t1 | AT1G24210 | 31.737 | 167 | 94 | 3 | 37 | 202 | 3 | 150 | 2.22e-18 | 82.4 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.02e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.12e-18 | 88.6 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.25e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.25e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.31e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.31e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 227 | 337 | 4.68e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.71e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.74e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.79e-18 | 88.2 |
MS.gene56755.t1 | AT4G12020 | 44.628 | 121 | 56 | 5 | 31 | 150 | 294 | 404 | 4.88e-18 | 88.2 |
MS.gene56755.t1 | AT1G27220 | 51.852 | 81 | 38 | 1 | 35 | 115 | 2 | 81 | 5.36e-18 | 82.4 |
MS.gene56755.t1 | AT1G27250 | 44.444 | 99 | 43 | 2 | 18 | 116 | 3 | 89 | 1.71e-16 | 76.6 |
MS.gene56755.t1 | AT1G27240 | 33.140 | 172 | 92 | 4 | 45 | 193 | 11 | 182 | 4.60e-15 | 73.9 |
Find 95 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCACAGCAATTTGATTTA+TGG | 0.128457 | 6.2:-4662552 | MS.gene56755:CDS |
GAGCGAATTCAATGATTATT+TGG | 0.184994 | 6.2:-4660669 | MS.gene56755:CDS |
AATCACTATGGTCCTTAAAA+AGG | 0.198941 | 6.2:+4662106 | None:intergenic |
TGTAAACATGCTCGTCATTT+TGG | 0.199549 | 6.2:+4662327 | None:intergenic |
AAAGAATGATTTACAAAATA+TGG | 0.232835 | 6.2:-4660937 | MS.gene56755:intron |
GCATGTTTACAAATCATTCT+TGG | 0.291056 | 6.2:-4662315 | MS.gene56755:CDS |
TGTCTATGAAGCTCTGAAAA+TGG | 0.297142 | 6.2:-4662914 | MS.gene56755:intron |
ATCAATGGTTGTCAGCTTCC+TGG | 0.311201 | 6.2:+4662823 | None:intergenic |
TGAAGCTCCTCAAAAGAAAA+AGG | 0.344958 | 6.2:-4662481 | MS.gene56755:CDS |
AGTCTTATCTCATGTCCTTT+TGG | 0.351855 | 6.2:+4662513 | None:intergenic |
TCCACTCAACATGCTTCATT+TGG | 0.357826 | 6.2:-4662036 | MS.gene56755:CDS |
GGTGAAGGTGGAGTTGTTAA+TGG | 0.358574 | 6.2:-4662866 | MS.gene56755:CDS |
CGCTACTGATGGTCATTTAT+CGG | 0.366830 | 6.2:-4660359 | MS.gene56755:CDS |
AGCAAAGGAAACGTGAGATC+AGG | 0.374268 | 6.2:-4661948 | MS.gene56755:CDS |
AAAGTATGACATGTTCCTTC+AGG | 0.383357 | 6.2:-4662750 | MS.gene56755:CDS |
TTGGAGCGTTGTGAAAATAC+TGG | 0.388042 | 6.2:-4660650 | MS.gene56755:intron |
GAAGGCACTTCAAGAATGTT+TGG | 0.395784 | 6.2:+4660985 | None:intergenic |
TTTGCAGACGGGTTTCTTGC+TGG | 0.396888 | 6.2:-4660549 | MS.gene56755:intron |
ACTGCCTCCACAGTGATTGC+TGG | 0.397139 | 6.2:+4659960 | None:intergenic |
TTCAGCTCTTGATGAACCTA+TGG | 0.406832 | 6.2:+4663618 | None:intergenic |
ACATCCATCCATCTCACGCT+TGG | 0.419117 | 6.2:+4660300 | None:intergenic |
GAAGGTTCTAGTGAATTATC+TGG | 0.419138 | 6.2:+4662057 | None:intergenic |
GTTAAGAAGGCTGAAGCTAA+TGG | 0.427895 | 6.2:-4661871 | MS.gene56755:CDS |
AAGTTTATGTGCGAAAGTTA+AGG | 0.441373 | 6.2:-4661033 | MS.gene56755:CDS |
TGATGCTTTATCTTATTTGA+AGG | 0.444496 | 6.2:-4662804 | MS.gene56755:CDS |
AACGTGAGATCAGGGATATA+AGG | 0.446943 | 6.2:-4661939 | MS.gene56755:CDS |
CATCCATCCATCTCACGCTT+GGG | 0.450025 | 6.2:+4660301 | None:intergenic |
TCAGGTCATGAAAGATTTCA+AGG | 0.452200 | 6.2:-4662732 | MS.gene56755:CDS |
TTTCAGGTGACTGATTTACT+TGG | 0.452643 | 6.2:-4660710 | MS.gene56755:intron |
GAGTGTTGAACATCCTGATC+TGG | 0.452673 | 6.2:-4662001 | MS.gene56755:CDS |
CGTCGGCAAACATTGTTCTC+CGG | 0.456875 | 6.2:-4660215 | MS.gene56755:CDS |
CAAATAAGATAAAGCATCAA+TGG | 0.460162 | 6.2:+4662808 | None:intergenic |
TTTCTGATGTAGGCCTAAGC+TGG | 0.463724 | 6.2:-4660044 | MS.gene56755:intron |
GCTAAGGTCAAGTTCTTGAA+TGG | 0.463830 | 6.2:+4660237 | None:intergenic |
GGTGGAGTTGTTAATGGCGG+TGG | 0.467292 | 6.2:-4662860 | MS.gene56755:CDS |
TCAATGGTTGTCAGCTTCCT+GGG | 0.471642 | 6.2:+4662824 | None:intergenic |
GGCAGTGGTGAAGGTGGCAG+TGG | 0.480680 | 6.2:-4662887 | MS.gene56755:CDS |
GTTTCGTCGTCATCCAGATC+AGG | 0.486043 | 6.2:+4661988 | None:intergenic |
AATGGAGGTGGCAGTGGTGA+AGG | 0.491542 | 6.2:-4662896 | MS.gene56755:CDS |
CACTGTGGAGGCAGTGCGCA+TGG | 0.497019 | 6.2:-4659952 | MS.gene56755:CDS |
GTCTTCGTCGTCCTCCACCT+TGG | 0.506749 | 6.2:+4660330 | None:intergenic |
GGTGAAGGTGGCAGTGGTGA+AGG | 0.511099 | 6.2:-4662881 | MS.gene56755:CDS |
GTCGGCAAACATTGTTCTCC+GGG | 0.512223 | 6.2:-4660214 | MS.gene56755:CDS |
AACAATGTTTGCCGACGCTA+AGG | 0.513153 | 6.2:+4660221 | None:intergenic |
TTCCATTGCTAAAATCATGA+AGG | 0.516038 | 6.2:+4660967 | None:intergenic |
ACTCCTCAAGCAAATCACTA+TGG | 0.523538 | 6.2:+4662094 | None:intergenic |
GGTGACAAGTCAGCCGTCGC+AGG | 0.523912 | 6.2:-4659998 | MS.gene56755:CDS |
GAAGGTGGCAGTGGTGAAGG+TGG | 0.524139 | 6.2:-4662878 | MS.gene56755:CDS |
CAAAGAACCCAAGCGTGAGA+TGG | 0.525550 | 6.2:-4660308 | MS.gene56755:CDS |
GTAGGTAGAAGCTGGTAGCC+CGG | 0.528926 | 6.2:+4660196 | None:intergenic |
GGAGTTGTTAATGGCGGTGG+AGG | 0.530443 | 6.2:-4662857 | MS.gene56755:CDS |
GAACCCAAGCGTGAGATGGA+TGG | 0.540388 | 6.2:-4660304 | MS.gene56755:CDS |
TGGAGGCAGTGCGCATGGAT+TGG | 0.542075 | 6.2:-4659947 | MS.gene56755:CDS |
TGAAATCTTTCATGACCTGA+AGG | 0.542141 | 6.2:+4662735 | None:intergenic |
ATGAAATTCAAACGTCCCAT+AGG | 0.555970 | 6.2:-4663634 | MS.gene56755:CDS |
TCTGAAAATGGAGGTGGCAG+TGG | 0.559504 | 6.2:-4662902 | MS.gene56755:CDS |
GCAAAGGAAACGTGAGATCA+GGG | 0.565159 | 6.2:-4661947 | MS.gene56755:CDS |
TGAACTTGCGCAAGGAGCAA+AGG | 0.568728 | 6.2:-4661963 | MS.gene56755:CDS |
AATGAAGCATGTTGAGTGGA+AGG | 0.569039 | 6.2:+4662039 | None:intergenic |
GGACCATAGTGATTTGCTTG+AGG | 0.570203 | 6.2:-4662097 | MS.gene56755:CDS |
TGGTGTCATAGCTGCTGTCA+AGG | 0.570797 | 6.2:-4662586 | MS.gene56755:CDS |
TGTCGTCAGTAGGTAGAAGC+TGG | 0.571961 | 6.2:+4660188 | None:intergenic |
TCAGCCGTCGCAGGTTGCAG+CGG | 0.572026 | 6.2:-4659989 | MS.gene56755:CDS |
ATCGGAATCATCCAAGGTGG+AGG | 0.575755 | 6.2:-4660341 | MS.gene56755:CDS |
TATGTGCGAAAGTTAAGGAG+AGG | 0.576086 | 6.2:-4661028 | MS.gene56755:CDS |
AACATACAAGGAGAAATACA+TGG | 0.576965 | 6.2:-4660266 | MS.gene56755:CDS |
TTCAACGCTTACCTACCAAA+AGG | 0.577015 | 6.2:-4662528 | MS.gene56755:CDS |
GTGGAGGTGCAAGTACTCCC+AGG | 0.577879 | 6.2:-4662841 | MS.gene56755:CDS |
CTCACTGTAAACCTCAGTAA+TGG | 0.592350 | 6.2:+4662259 | None:intergenic |
GTTTCCAGGACGGACACTCA+TGG | 0.592858 | 6.2:-4662606 | MS.gene56755:intron |
TGTATAACAATGTCCAGCTT+AGG | 0.593330 | 6.2:+4660031 | None:intergenic |
TGAAGCTCTGAAAATGGAGG+TGG | 0.595249 | 6.2:-4662908 | MS.gene56755:intron |
TCAGAGCCACTCGCTACTGA+TGG | 0.597556 | 6.2:-4660370 | MS.gene56755:intron |
AGCTTCTACCTACTGACGAC+AGG | 0.599591 | 6.2:-4660186 | MS.gene56755:intron |
ACATGAGATAAGACTTGATG+AGG | 0.602915 | 6.2:-4662505 | MS.gene56755:CDS |
CAAGAACTTGACCTTAGCGT+CGG | 0.605982 | 6.2:-4660232 | MS.gene56755:CDS |
TCAGCTCTTGATGAACCTAT+GGG | 0.606675 | 6.2:+4663619 | None:intergenic |
CGAAACAATGAACTTGCGCA+AGG | 0.607776 | 6.2:-4661971 | MS.gene56755:CDS |
TCATTTATCGGAATCATCCA+AGG | 0.613554 | 6.2:-4660347 | MS.gene56755:CDS |
ACGACCGCTGCAACCTGCGA+CGG | 0.621416 | 6.2:+4659985 | None:intergenic |
GGAGGTGGCAGTGGTGAAGG+TGG | 0.625605 | 6.2:-4662893 | MS.gene56755:CDS |
GCTGTCAAGGAACTATTCAA+AGG | 0.626015 | 6.2:-4662573 | MS.gene56755:CDS |
TGAAGAGAAAGAAACATACA+AGG | 0.631772 | 6.2:-4660278 | MS.gene56755:CDS |
GAAGGTGGAGTTGTTAATGG+CGG | 0.639574 | 6.2:-4662863 | MS.gene56755:CDS |
ACCAAATGAAGCATGTTGAG+TGG | 0.642539 | 6.2:+4662035 | None:intergenic |
GGAGAGGTTGAGCAGCGCTG+AGG | 0.647893 | 6.2:-4661012 | MS.gene56755:CDS |
GTAGCCAGCAATCACTGTGG+AGG | 0.664908 | 6.2:-4659964 | MS.gene56755:CDS |
ACATACAAGGAGAAATACAT+GGG | 0.670004 | 6.2:-4660265 | MS.gene56755:CDS |
AAATGACCATCAGTAGCGAG+TGG | 0.680516 | 6.2:+4660364 | None:intergenic |
CATTACTGAGGTTTACAGTG+AGG | 0.688498 | 6.2:-4662258 | MS.gene56755:intron |
AGAACACAAGACCATTACTG+AGG | 0.690770 | 6.2:-4662270 | MS.gene56755:CDS |
CTATGAAGCTCTGAAAATGG+AGG | 0.696567 | 6.2:-4662911 | MS.gene56755:intron |
TTTATCGGAATCATCCAAGG+TGG | 0.715628 | 6.2:-4660344 | MS.gene56755:CDS |
ATTGTTATACACATTGCGCG+CGG | 0.726992 | 6.2:-4660019 | MS.gene56755:CDS |
GTCGTAGCCAGCAATCACTG+TGG | 0.732284 | 6.2:-4659967 | MS.gene56755:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTATTTTTATTACATTTT+AGG | - | chr6.2:4661776-4661795 | MS.gene56755:intron | 10.0% |
!!! | ATTTTCTTTAAAAAATGTTT+TGG | - | chr6.2:4661342-4661361 | MS.gene56755:intron | 10.0% |
!!! | TAAATAACAAATTTTAGAAT+TGG | + | chr6.2:4662434-4662453 | None:intergenic | 10.0% |
!! | AAAAATTGCAATGATATTTA+TGG | + | chr6.2:4663033-4663052 | None:intergenic | 15.0% |
!! | AAAGAATGATTTACAAAATA+TGG | - | chr6.2:4662592-4662611 | MS.gene56755:CDS | 15.0% |
!! | ATGTTGAAATTAACATAATT+TGG | - | chr6.2:4660338-4660357 | MS.gene56755:CDS | 15.0% |
!! | GAAAAAAATAAATAAAACCT+AGG | + | chr6.2:4660209-4660228 | None:intergenic | 15.0% |
!!! | ATGAATTTTGATTTTGATAT+TGG | - | chr6.2:4660533-4660552 | MS.gene56755:intron | 15.0% |
!!! | TTTTTTACATAAAAATCTCT+AGG | - | chr6.2:4661393-4661412 | MS.gene56755:intron | 15.0% |
!!! | TTTTTTTCTATTTGAAAACT+CGG | - | chr6.2:4660221-4660240 | MS.gene56755:CDS | 15.0% |
!! | ACTTTCGAAATATATATTTC+AGG | - | chr6.2:4662803-4662822 | MS.gene56755:CDS | 20.0% |
!! | ATCAAAATTCATAATATTCC+AGG | + | chr6.2:4660525-4660544 | None:intergenic | 20.0% |
!! | ATGAAATTAACATTCAACAT+TGG | + | chr6.2:4662276-4662295 | None:intergenic | 20.0% |
!! | ATGCATAAAACTTAACTATT+AGG | - | chr6.2:4662249-4662268 | MS.gene56755:intron | 20.0% |
!! | GATTATAAATACACAATACT+TGG | - | chr6.2:4662039-4662058 | MS.gene56755:CDS | 20.0% |
!! | TCAAAATTCATAATATTCCA+GGG | + | chr6.2:4660524-4660543 | None:intergenic | 20.0% |
!!! | AATTGTTGTTGAATTTCATT+AGG | - | chr6.2:4660090-4660109 | MS.gene56755:intron | 20.0% |
!!! | ATGCAATGTTATTTTTATCA+AGG | - | chr6.2:4662702-4662721 | MS.gene56755:intron | 20.0% |
!!! | ATGCATCTAAAATGATATAA+CGG | + | chr6.2:4662235-4662254 | None:intergenic | 20.0% |
!!! | ATTGTTGTTGAATTTCATTA+GGG | - | chr6.2:4660091-4660110 | MS.gene56755:intron | 20.0% |
!!! | ATTTGAGTTTAAATTGATTG+TGG | - | chr6.2:4660123-4660142 | MS.gene56755:intron | 20.0% |
!!! | TTAACAGATTTCTTTTTGTT+AGG | + | chr6.2:4661643-4661662 | None:intergenic | 20.0% |
!!! | TTCATTTTAAGACAAAACAA+TGG | + | chr6.2:4663428-4663447 | None:intergenic | 20.0% |
!!! | TTGTTAGTTTGTTGATATTT+TGG | - | chr6.2:4660428-4660447 | MS.gene56755:intron | 20.0% |
! | AAATAAATAAAACCTAGGTC+TGG | + | chr6.2:4660204-4660223 | None:intergenic | 25.0% |
! | AAATTAGGACAAATCCAAAA+AGG | + | chr6.2:4660017-4660036 | None:intergenic | 25.0% |
! | AACATTGTACTTACAATCAA+GGG | - | chr6.2:4660876-4660895 | MS.gene56755:intron | 25.0% |
! | ACACGTAAAAAATTAAGAAG+AGG | - | chr6.2:4661907-4661926 | MS.gene56755:CDS | 25.0% |
! | CAAAAAGAAATCTGTTAAGA+AGG | - | chr6.2:4661645-4661664 | MS.gene56755:intron | 25.0% |
! | CATCACAAAACGTAAAAATA+AGG | + | chr6.2:4660842-4660861 | None:intergenic | 25.0% |
! | TCATAAAGTAGTATGATTGT+CGG | - | chr6.2:4661873-4661892 | MS.gene56755:CDS | 25.0% |
!! | AATTCAACCTTTTTCTTTTG+AGG | + | chr6.2:4661058-4661077 | None:intergenic | 25.0% |
!! | CAAATAAGATAAAGCATCAA+TGG | + | chr6.2:4660724-4660743 | None:intergenic | 25.0% |
!! | TCATACTTTTCTTTTTGATC+CGG | + | chr6.2:4660768-4660787 | None:intergenic | 25.0% |
!! | TGATGCTTTATCTTATTTGA+AGG | - | chr6.2:4660725-4660744 | MS.gene56755:intron | 25.0% |
!!! | CAATTCACTTTTCATCTATT+TGG | - | chr6.2:4663107-4663126 | MS.gene56755:intron | 25.0% |
AAAGGAGTGAAACACAAAAT+AGG | + | chr6.2:4659999-4660018 | None:intergenic | 30.0% | |
AACATACAAGGAGAAATACA+TGG | - | chr6.2:4663263-4663282 | MS.gene56755:intron | 30.0% | |
AAGTTTATGTGCGAAAGTTA+AGG | - | chr6.2:4662496-4662515 | MS.gene56755:CDS | 30.0% | |
AATCACTATGGTCCTTAAAA+AGG | + | chr6.2:4661426-4661445 | None:intergenic | 30.0% | |
ACAAGAGTTCATAATATTCC+AGG | + | chr6.2:4660412-4660431 | None:intergenic | 30.0% | |
ACATACAAGGAGAAATACAT+GGG | - | chr6.2:4663264-4663283 | MS.gene56755:intron | 30.0% | |
ATCACTATGGTCCTTAAAAA+GGG | + | chr6.2:4661425-4661444 | None:intergenic | 30.0% | |
ATTGAACACTACAAGTGAAA+AGG | + | chr6.2:4660073-4660092 | None:intergenic | 30.0% | |
CAAATTTACCAATTACAGCT+AGG | + | chr6.2:4661164-4661183 | None:intergenic | 30.0% | |
CAACAGTGAAACACAAAATT+AGG | + | chr6.2:4660032-4660051 | None:intergenic | 30.0% | |
CAATCAAGAAAGATGTTAAC+AGG | + | chr6.2:4662378-4662397 | None:intergenic | 30.0% | |
CTTGTTCGTTGTTGATATTT+CGG | - | chr6.2:4660568-4660587 | MS.gene56755:intron | 30.0% | |
GAAACTTCAAGAAATCGAAA+TGG | + | chr6.2:4662336-4662355 | None:intergenic | 30.0% | |
GAACATTGTACTTACAATCA+AGG | - | chr6.2:4660875-4660894 | MS.gene56755:intron | 30.0% | |
GAGCGAATTCAATGATTATT+TGG | - | chr6.2:4662860-4662879 | MS.gene56755:CDS | 30.0% | |
GCATGTTTACAAATCATTCT+TGG | - | chr6.2:4661214-4661233 | MS.gene56755:intron | 30.0% | |
GTTTAACAAGAGAACTATAG+TGG | - | chr6.2:4662146-4662165 | MS.gene56755:intron | 30.0% | |
TAAGCTATCATACTATGCTT+TGG | - | chr6.2:4661729-4661748 | MS.gene56755:intron | 30.0% | |
TCAACATTACTCGTATTACT+TGG | + | chr6.2:4660325-4660344 | None:intergenic | 30.0% | |
TGAAGAGAAAGAAACATACA+AGG | - | chr6.2:4663251-4663270 | MS.gene56755:intron | 30.0% | |
TGAGACCTATTTCAATGAAT+CGG | + | chr6.2:4662729-4662748 | None:intergenic | 30.0% | |
TTCCATTGCTAAAATCATGA+AGG | + | chr6.2:4662565-4662584 | None:intergenic | 30.0% | |
! | AAATGTGTTGACATGCATTT+AGG | - | chr6.2:4663446-4663465 | MS.gene56755:intron | 30.0% |
! | GTTTTGTGATGAGTTTGAAA+CGG | - | chr6.2:4660851-4660870 | MS.gene56755:intron | 30.0% |
! | TGCTATGTAGTATTCCATTT+TGG | - | chr6.2:4662660-4662679 | MS.gene56755:intron | 30.0% |
! | TTTTGTGTTTCACTCCTTTT+TGG | - | chr6.2:4660000-4660019 | MS.gene56755:CDS | 30.0% |
!! | ACAAAGTGCTGAAAGTATAT+AGG | + | chr6.2:4661310-4661329 | None:intergenic | 30.0% |
!! | GACATTGTTATTTCTGATGT+AGG | - | chr6.2:4663475-4663494 | MS.gene56755:intron | 30.0% |
!! | TTTTGTGATGAGTTTGAAAC+GGG | - | chr6.2:4660852-4660871 | MS.gene56755:intron | 30.0% |
!!! | GAAGATGCTATTAGTTTTGT+GGG | - | chr6.2:4661079-4661098 | MS.gene56755:intron | 30.0% |
!!! | TGAAGATGCTATTAGTTTTG+TGG | - | chr6.2:4661078-4661097 | MS.gene56755:intron | 30.0% |
AAAGTATGACATGTTCCTTC+AGG | - | chr6.2:4660779-4660798 | MS.gene56755:intron | 35.0% | |
AAGGTCCGATTCATTGAAAT+AGG | - | chr6.2:4662721-4662740 | MS.gene56755:intron | 35.0% | |
ACAGCATATTGAAAACGTGA+TGG | + | chr6.2:4661832-4661851 | None:intergenic | 35.0% | |
ACATGAGATAAGACTTGATG+AGG | - | chr6.2:4661024-4661043 | MS.gene56755:CDS | 35.0% | |
AGATTTCAAGGCTCAAAAGT+AGG | - | chr6.2:4660809-4660828 | MS.gene56755:intron | 35.0% | |
AGGTTTACAGTGAGGTAATA+TGG | - | chr6.2:4661279-4661298 | MS.gene56755:intron | 35.0% | |
ATACATGACTGACACGAATA+CGG | + | chr6.2:4662465-4662484 | None:intergenic | 35.0% | |
ATGAAATTCAAACGTCCCAT+AGG | - | chr6.2:4659895-4659914 | MS.gene56755:CDS | 35.0% | |
CGTTAATTCCTAGCTGTAAT+TGG | - | chr6.2:4661153-4661172 | MS.gene56755:intron | 35.0% | |
CTATTTGAAAACTCGGTATC+CGG | - | chr6.2:4660228-4660247 | MS.gene56755:CDS | 35.0% | |
GAAAGATGTTAACAGGACAA+AGG | + | chr6.2:4662371-4662390 | None:intergenic | 35.0% | |
TAACAAGAGAACTATAGTGG+AGG | - | chr6.2:4662149-4662168 | MS.gene56755:intron | 35.0% | |
TACAACTGAAAACGCCAAAA+TGG | + | chr6.2:4662677-4662696 | None:intergenic | 35.0% | |
TCAGGTCATGAAAGATTTCA+AGG | - | chr6.2:4660797-4660816 | MS.gene56755:intron | 35.0% | |
TCAGTTACTAAGCGAGTTTA+CGG | - | chr6.2:4661126-4661145 | MS.gene56755:intron | 35.0% | |
TCATTTATCGGAATCATCCA+AGG | - | chr6.2:4663182-4663201 | MS.gene56755:intron | 35.0% | |
TCTGCATTTGCATGTATTTG+TGG | - | chr6.2:4660371-4660390 | MS.gene56755:intron | 35.0% | |
TGAAATAGGTCTCACTATCT+CGG | - | chr6.2:4662735-4662754 | MS.gene56755:CDS | 35.0% | |
TGAAATCTTTCATGACCTGA+AGG | + | chr6.2:4660797-4660816 | None:intergenic | 35.0% | |
TGAAGCTCCTCAAAAGAAAA+AGG | - | chr6.2:4661048-4661067 | MS.gene56755:CDS | 35.0% | |
TGGTTCCAAAATGAACATTC+AGG | + | chr6.2:4663408-4663427 | None:intergenic | 35.0% | |
TGTATAACAATGTCCAGCTT+AGG | + | chr6.2:4663501-4663520 | None:intergenic | 35.0% | |
TTCCAAAATGAACATTCAGG+AGG | + | chr6.2:4663405-4663424 | None:intergenic | 35.0% | |
! | GAAGGTTCTAGTGAATTATC+TGG | + | chr6.2:4661475-4661494 | None:intergenic | 35.0% |
! | GGTCACAGCAATTTGATTTA+TGG | - | chr6.2:4660977-4660996 | MS.gene56755:CDS | 35.0% |
! | TGTAAACATGCTCGTCATTT+TGG | + | chr6.2:4661205-4661224 | None:intergenic | 35.0% |
! | TTATCTCATGTCCTTTTGGT+AGG | + | chr6.2:4661015-4661034 | None:intergenic | 35.0% |
! | TTTCAGGTGACTGATTTACT+TGG | - | chr6.2:4662819-4662838 | MS.gene56755:CDS | 35.0% |
! | TTTGTGATGAGTTTGAAACG+GGG | - | chr6.2:4660853-4660872 | MS.gene56755:intron | 35.0% |
!! | AGTCTTATCTCATGTCCTTT+TGG | + | chr6.2:4661019-4661038 | None:intergenic | 35.0% |
!! | CACTATTGACTTCTAGAGAA+TGG | + | chr6.2:4662013-4662032 | None:intergenic | 35.0% |
!! | TGCCTTCATGATTTTAGCAA+TGG | - | chr6.2:4662560-4662579 | MS.gene56755:CDS | 35.0% |
!! | TGGACGAATATTTTTGAACC+TGG | - | chr6.2:4660391-4660410 | MS.gene56755:intron | 35.0% |
!! | TGTCTATGAAGCTCTGAAAA+TGG | - | chr6.2:4660615-4660634 | MS.gene56755:intron | 35.0% |
!!! | TAGTTTTGTGGGCAAGATAA+AGG | - | chr6.2:4661090-4661109 | MS.gene56755:intron | 35.0% |
!!! | TGCGTATTTGTTTTTGCAGA+CGG | - | chr6.2:4662968-4662987 | MS.gene56755:intron | 35.0% |
AAAATGAACATTCAGGAGGC+AGG | + | chr6.2:4663401-4663420 | None:intergenic | 40.0% | |
AACGTGAGATCAGGGATATA+AGG | - | chr6.2:4661590-4661609 | MS.gene56755:intron | 40.0% | |
AATGAAGCATGTTGAGTGGA+AGG | + | chr6.2:4661493-4661512 | None:intergenic | 40.0% | |
ACCAAATGAAGCATGTTGAG+TGG | + | chr6.2:4661497-4661516 | None:intergenic | 40.0% | |
ACTCCTCAAGCAAATCACTA+TGG | + | chr6.2:4661438-4661457 | None:intergenic | 40.0% | |
AGAACACAAGACCATTACTG+AGG | - | chr6.2:4661259-4661278 | MS.gene56755:intron | 40.0% | |
ATACGCAGAATGAAACCTCA+AGG | + | chr6.2:4662955-4662974 | None:intergenic | 40.0% | |
ATTGTTATACACATTGCGCG+CGG | - | chr6.2:4663510-4663529 | MS.gene56755:intron | 40.0% | |
ATTTAGCCCCTCAGATTAGT+GGG | + | chr6.2:4660262-4660281 | None:intergenic | 40.0% | |
CATTACTGAGGTTTACAGTG+AGG | - | chr6.2:4661271-4661290 | MS.gene56755:intron | 40.0% | |
CGCTACTGATGGTCATTTAT+CGG | - | chr6.2:4663170-4663189 | MS.gene56755:intron | 40.0% | |
CTCACTGTAAACCTCAGTAA+TGG | + | chr6.2:4661273-4661292 | None:intergenic | 40.0% | |
GCTAAGGTCAAGTTCTTGAA+TGG | + | chr6.2:4663295-4663314 | None:intergenic | 40.0% | |
GCTGTCAAGGAACTATTCAA+AGG | - | chr6.2:4660956-4660975 | MS.gene56755:CDS | 40.0% | |
GGAAGTGAAAAACACGTTTC+CGG | - | chr6.2:4660746-4660765 | MS.gene56755:intron | 40.0% | |
GTCAGCAAAGATACACGAAA+AGG | + | chr6.2:4662627-4662646 | None:intergenic | 40.0% | |
GTTAAGAAGGCTGAAGCTAA+TGG | - | chr6.2:4661658-4661677 | MS.gene56755:intron | 40.0% | |
TATGTGCGAAAGTTAAGGAG+AGG | - | chr6.2:4662501-4662520 | MS.gene56755:CDS | 40.0% | |
TCAGCTCTTGATGAACCTAT+GGG | + | chr6.2:4659913-4659932 | None:intergenic | 40.0% | |
TCCACTCAACATGCTTCATT+TGG | - | chr6.2:4661493-4661512 | MS.gene56755:intron | 40.0% | |
TTACCTTGCGAGTTCTATTG+CGG | - | chr6.2:4662763-4662782 | MS.gene56755:CDS | 40.0% | |
TTCAACGCTTACCTACCAAA+AGG | - | chr6.2:4661001-4661020 | MS.gene56755:CDS | 40.0% | |
TTCAGCTCTTGATGAACCTA+TGG | + | chr6.2:4659914-4659933 | None:intergenic | 40.0% | |
TTTATCGGAATCATCCAAGG+TGG | - | chr6.2:4663185-4663204 | MS.gene56755:intron | 40.0% | |
! | AAGTTTTACCTGTCGTCAGT+AGG | + | chr6.2:4663354-4663373 | None:intergenic | 40.0% |
! | AGGGATCTCAGTATTTTGTG+TGG | - | chr6.2:4660895-4660914 | MS.gene56755:intron | 40.0% |
! | CTAGGTTGCTACCCTTTTTA+AGG | - | chr6.2:4661411-4661430 | MS.gene56755:intron | 40.0% |
! | TCGAATTTTCTCATGCCTTG+AGG | - | chr6.2:4662937-4662956 | MS.gene56755:intron | 40.0% |
! | TCTAGAACCCACTAATCTGA+GGG | - | chr6.2:4660252-4660271 | MS.gene56755:CDS | 40.0% |
! | TGACTACGATTTTTGAACCC+TGG | - | chr6.2:4660504-4660523 | MS.gene56755:intron | 40.0% |
! | TGCCTCCTGAATGTTCATTT+TGG | - | chr6.2:4663400-4663419 | MS.gene56755:intron | 40.0% |
!! | CTATGAAGCTCTGAAAATGG+AGG | - | chr6.2:4660618-4660637 | MS.gene56755:intron | 40.0% |
!! | GAAGGCACTTCAAGAATGTT+TGG | + | chr6.2:4662547-4662566 | None:intergenic | 40.0% |
!! | TCGTGTATCTTTGCTGACTT+TGG | - | chr6.2:4662629-4662648 | MS.gene56755:intron | 40.0% |
!! | TTGGAGCGTTGTGAAAATAC+TGG | - | chr6.2:4662879-4662898 | MS.gene56755:CDS | 40.0% |
!!! | GCGTATTTGTTTTTGCAGAC+GGG | - | chr6.2:4662969-4662988 | MS.gene56755:intron | 40.0% |
AAATGACCATCAGTAGCGAG+TGG | + | chr6.2:4663168-4663187 | None:intergenic | 45.0% | |
AACAATGTTTGCCGACGCTA+AGG | + | chr6.2:4663311-4663330 | None:intergenic | 45.0% | |
AGCAAAGGAAACGTGAGATC+AGG | - | chr6.2:4661581-4661600 | MS.gene56755:intron | 45.0% | |
ATCAATGGTTGTCAGCTTCC+TGG | + | chr6.2:4660709-4660728 | None:intergenic | 45.0% | |
CAAGAACTTGACCTTAGCGT+CGG | - | chr6.2:4663297-4663316 | MS.gene56755:intron | 45.0% | |
CGAAACAATGAACTTGCGCA+AGG | - | chr6.2:4661558-4661577 | MS.gene56755:intron | 45.0% | |
CTAGAACCCACTAATCTGAG+GGG | - | chr6.2:4660253-4660272 | MS.gene56755:CDS | 45.0% | |
GAAGGTGGAGTTGTTAATGG+CGG | - | chr6.2:4660666-4660685 | MS.gene56755:CDS | 45.0% | |
GATTTAGCCCCTCAGATTAG+TGG | + | chr6.2:4660263-4660282 | None:intergenic | 45.0% | |
GCAAAGGAAACGTGAGATCA+GGG | - | chr6.2:4661582-4661601 | MS.gene56755:intron | 45.0% | |
GGTGAAGGTGGAGTTGTTAA+TGG | - | chr6.2:4660663-4660682 | MS.gene56755:CDS | 45.0% | |
TCAATGGTTGTCAGCTTCCT+GGG | + | chr6.2:4660708-4660727 | None:intergenic | 45.0% | |
TTAAACTCGATATCCTGCCC+TGG | - | chr6.2:4660158-4660177 | MS.gene56755:intron | 45.0% | |
TTTCTGATGTAGGCCTAAGC+TGG | - | chr6.2:4663485-4663504 | MS.gene56755:intron | 45.0% | |
TTTGTGTGGCGATTGTTTCC+AGG | - | chr6.2:4660909-4660928 | MS.gene56755:intron | 45.0% | |
!! | AGATTAGTGGGTTCTAGAGC+CGG | + | chr6.2:4660250-4660269 | None:intergenic | 45.0% |
!! | CTCTAGAACCCACTAATCTG+AGG | - | chr6.2:4660251-4660270 | MS.gene56755:CDS | 45.0% |
!! | GAGTGTTGAACATCCTGATC+TGG | - | chr6.2:4661528-4661547 | MS.gene56755:intron | 45.0% |
!! | GGACCATAGTGATTTGCTTG+AGG | - | chr6.2:4661432-4661451 | MS.gene56755:intron | 45.0% |
!! | TGAAGCTCTGAAAATGGAGG+TGG | - | chr6.2:4660621-4660640 | MS.gene56755:intron | 45.0% |
AAACCTAGGTCTGGTCCACT+CGG | + | chr6.2:4660195-4660214 | None:intergenic | 50.0% | |
ACATCCATCCATCTCACGCT+TGG | + | chr6.2:4663232-4663251 | None:intergenic | 50.0% | |
AGACCGCAATAGAACTCGCA+AGG | + | chr6.2:4662769-4662788 | None:intergenic | 50.0% | |
AGCTTCTACCTACTGACGAC+AGG | - | chr6.2:4663343-4663362 | MS.gene56755:intron | 50.0% | |
ATCGGAATCATCCAAGGTGG+AGG | - | chr6.2:4663188-4663207 | MS.gene56755:intron | 50.0% | |
CAAAGAACCCAAGCGTGAGA+TGG | - | chr6.2:4663221-4663240 | MS.gene56755:intron | 50.0% | |
CATCCATCCATCTCACGCTT+GGG | + | chr6.2:4663231-4663250 | None:intergenic | 50.0% | |
CGTCGGCAAACATTGTTCTC+CGG | - | chr6.2:4663314-4663333 | MS.gene56755:intron | 50.0% | |
GTCGGCAAACATTGTTCTCC+GGG | - | chr6.2:4663315-4663334 | MS.gene56755:intron | 50.0% | |
GTTTCGTCGTCATCCAGATC+AGG | + | chr6.2:4661544-4661563 | None:intergenic | 50.0% | |
TCTGAAAATGGAGGTGGCAG+TGG | - | chr6.2:4660627-4660646 | MS.gene56755:intron | 50.0% | |
TGAACTTGCGCAAGGAGCAA+AGG | - | chr6.2:4661566-4661585 | MS.gene56755:intron | 50.0% | |
TGTCGTCAGTAGGTAGAAGC+TGG | + | chr6.2:4663344-4663363 | None:intergenic | 50.0% | |
TGTGGCGATTGTTTCCAGGA+CGG | - | chr6.2:4660913-4660932 | MS.gene56755:intron | 50.0% | |
! | TTTGCAGACGGGTTTCTTGC+TGG | - | chr6.2:4662980-4662999 | MS.gene56755:intron | 50.0% |
!! | ACTCGGATTAGTCCGTTCCA+GGG | + | chr6.2:4660178-4660197 | None:intergenic | 50.0% |
!! | TGGTGTCATAGCTGCTGTCA+AGG | - | chr6.2:4660943-4660962 | MS.gene56755:CDS | 50.0% |
AATCCGAGTGGACCAGACCT+AGG | - | chr6.2:4660189-4660208 | MS.gene56755:CDS | 55.0% | |
AATGGAGGTGGCAGTGGTGA+AGG | - | chr6.2:4660633-4660652 | MS.gene56755:intron | 55.0% | |
ACTGCCTCCACAGTGATTGC+TGG | + | chr6.2:4663572-4663591 | None:intergenic | 55.0% | |
CTCGATATCCTGCCCTGGAA+CGG | - | chr6.2:4660163-4660182 | MS.gene56755:intron | 55.0% | |
GAACCCAAGCGTGAGATGGA+TGG | - | chr6.2:4663225-4663244 | MS.gene56755:intron | 55.0% | |
GGAGTTGTTAATGGCGGTGG+AGG | - | chr6.2:4660672-4660691 | MS.gene56755:CDS | 55.0% | |
GGTGGAGTTGTTAATGGCGG+TGG | - | chr6.2:4660669-4660688 | MS.gene56755:CDS | 55.0% | |
GTAGCCAGCAATCACTGTGG+AGG | - | chr6.2:4663565-4663584 | MS.gene56755:intron | 55.0% | |
GTAGGTAGAAGCTGGTAGCC+CGG | + | chr6.2:4663336-4663355 | None:intergenic | 55.0% | |
GTCGTAGCCAGCAATCACTG+TGG | - | chr6.2:4663562-4663581 | MS.gene56755:intron | 55.0% | |
GTTTCCAGGACGGACACTCA+TGG | - | chr6.2:4660923-4660942 | MS.gene56755:intron | 55.0% | |
TCAGAGCCACTCGCTACTGA+TGG | - | chr6.2:4663159-4663178 | MS.gene56755:intron | 55.0% | |
!! | CACTCGGATTAGTCCGTTCC+AGG | + | chr6.2:4660179-4660198 | None:intergenic | 55.0% |
!! | CTGGAACGGACTAATCCGAG+TGG | - | chr6.2:4660177-4660196 | MS.gene56755:intron | 55.0% |
GAAGGTGGCAGTGGTGAAGG+TGG | - | chr6.2:4660651-4660670 | MS.gene56755:CDS | 60.0% | |
GACACCATGAGTGTCCGTCC+TGG | + | chr6.2:4660930-4660949 | None:intergenic | 60.0% | |
GGTGAAGGTGGCAGTGGTGA+AGG | - | chr6.2:4660648-4660667 | MS.gene56755:intron | 60.0% | |
GTCTTCGTCGTCCTCCACCT+TGG | + | chr6.2:4663202-4663221 | None:intergenic | 60.0% | |
TGGAGGCAGTGCGCATGGAT+TGG | - | chr6.2:4663582-4663601 | MS.gene56755:intron | 60.0% | |
! | GTGGAGGTGCAAGTACTCCC+AGG | - | chr6.2:4660688-4660707 | MS.gene56755:CDS | 60.0% |
!! | GGATTAGTCCGTTCCAGGGC+AGG | + | chr6.2:4660174-4660193 | None:intergenic | 60.0% |
ACGACCGCTGCAACCTGCGA+CGG | + | chr6.2:4663547-4663566 | None:intergenic | 65.0% | |
CACTGTGGAGGCAGTGCGCA+TGG | - | chr6.2:4663577-4663596 | MS.gene56755:intron | 65.0% | |
GGAGAGGTTGAGCAGCGCTG+AGG | - | chr6.2:4662517-4662536 | MS.gene56755:CDS | 65.0% | |
GGAGGTGGCAGTGGTGAAGG+TGG | - | chr6.2:4660636-4660655 | MS.gene56755:intron | 65.0% | |
GGCAGTGGTGAAGGTGGCAG+TGG | - | chr6.2:4660642-4660661 | MS.gene56755:intron | 65.0% | |
GGTGACAAGTCAGCCGTCGC+AGG | - | chr6.2:4663531-4663550 | MS.gene56755:intron | 65.0% | |
TCAGCCGTCGCAGGTTGCAG+CGG | - | chr6.2:4663540-4663559 | MS.gene56755:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 4659895 | 4663656 | 4659895 | ID=MS.gene56755 |
chr6.2 | mRNA | 4659895 | 4663656 | 4659895 | ID=MS.gene56755.t1;Parent=MS.gene56755 |
chr6.2 | exon | 4663616 | 4663656 | 4663616 | ID=MS.gene56755.t1.exon1;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4663616 | 4663656 | 4663616 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4662725 | 4662925 | 4662725 | ID=MS.gene56755.t1.exon2;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4662725 | 4662925 | 4662725 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4662440 | 4662620 | 4662440 | ID=MS.gene56755.t1.exon3;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4662440 | 4662620 | 4662440 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4662259 | 4662357 | 4662259 | ID=MS.gene56755.t1.exon4;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4662259 | 4662357 | 4662259 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4661824 | 4662136 | 4661824 | ID=MS.gene56755.t1.exon5;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4661824 | 4662136 | 4661824 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4660938 | 4661074 | 4660938 | ID=MS.gene56755.t1.exon6;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4660938 | 4661074 | 4660938 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4660651 | 4660726 | 4660651 | ID=MS.gene56755.t1.exon7;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4660651 | 4660726 | 4660651 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4660535 | 4660564 | 4660535 | ID=MS.gene56755.t1.exon8;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4660535 | 4660564 | 4660535 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4660187 | 4660388 | 4660187 | ID=MS.gene56755.t1.exon9;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4660187 | 4660388 | 4660187 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
chr6.2 | exon | 4659895 | 4660054 | 4659895 | ID=MS.gene56755.t1.exon10;Parent=MS.gene56755.t1 |
chr6.2 | CDS | 4659895 | 4660054 | 4659895 | ID=cds.MS.gene56755.t1;Parent=MS.gene56755.t1 |
Gene Sequence |
Protein sequence |