Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57127.t1 | XP_013450874.1 | 77.8 | 454 | 73 | 2 | 2 | 429 | 126 | 577 | 6.00E-200 | 706.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57127.t1 | Q4F883 | 41.6 | 423 | 209 | 16 | 11 | 422 | 139 | 534 | 1.8e-72 | 274.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57127.t1 | A0A072U5B0 | 77.8 | 454 | 73 | 2 | 2 | 429 | 126 | 577 | 4.3e-200 | 706.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene57127 | 0.813075 | 3.08E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene57127 | 0.803829 | 2.89E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene57127 | 0.814595 | 1.42E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene57127 | 0.817156 | 3.82E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene57127 | 0.802004 | 6.89E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene57127 | 0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene051492 | MS.gene57127 | 0.81259 | 3.93E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene57127 | 0.849376 | 3.37E-60 | -1.69E-46 |
| MS.gene054291 | MS.gene57127 | -0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene57127 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene57127 | 0.82228 | 2.58E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene57127 | 0.810927 | 9.03E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene57127 | 0.822469 | 2.33E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene57127 | 0.831734 | 1.41E-55 | -1.69E-46 |
| MS.gene056776 | MS.gene57127 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene57127 | 0.810076 | 1.38E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene57127 | 0.804498 | 2.10E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene57127 | 0.81955 | 1.09E-52 | -1.69E-46 |
| MS.gene057600 | MS.gene57127 | 0.800257 | 1.57E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene57127 | 0.807722 | 4.40E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene57127 | 0.808887 | 2.48E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene57127 | 0.80614 | 9.50E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene57127 | 0.805762 | 1.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57127.t1 | MTR_6g007975 | 77.753 | 454 | 73 | 2 | 2 | 429 | 126 | 577 | 0.0 | 729 |
| MS.gene57127.t1 | MTR_6g007985 | 73.187 | 455 | 95 | 2 | 1 | 429 | 48 | 501 | 0.0 | 672 |
| MS.gene57127.t1 | MTR_6g008015 | 72.907 | 454 | 96 | 2 | 2 | 429 | 126 | 578 | 0.0 | 669 |
| MS.gene57127.t1 | MTR_6g008055 | 71.047 | 449 | 97 | 3 | 10 | 429 | 131 | 575 | 0.0 | 631 |
| MS.gene57127.t1 | MTR_3g467360 | 62.363 | 457 | 142 | 4 | 2 | 429 | 120 | 575 | 0.0 | 566 |
| MS.gene57127.t1 | MTR_3g467360 | 62.363 | 457 | 142 | 4 | 2 | 429 | 126 | 581 | 0.0 | 566 |
| MS.gene57127.t1 | MTR_0286s0040 | 64.192 | 458 | 64 | 5 | 1 | 429 | 1 | 387 | 0.0 | 556 |
| MS.gene57127.t1 | MTR_6g007980 | 54.048 | 457 | 173 | 8 | 4 | 428 | 124 | 575 | 7.91e-155 | 450 |
| MS.gene57127.t1 | MTR_6g007980 | 53.930 | 458 | 173 | 9 | 4 | 428 | 124 | 576 | 2.82e-151 | 441 |
| MS.gene57127.t1 | MTR_6g007980 | 53.813 | 459 | 173 | 9 | 4 | 428 | 124 | 577 | 4.13e-151 | 441 |
| MS.gene57127.t1 | MTR_3g467350 | 55.939 | 261 | 102 | 4 | 10 | 259 | 130 | 388 | 4.55e-84 | 266 |
| MS.gene57127.t1 | MTR_3g467350 | 69.388 | 98 | 30 | 0 | 332 | 429 | 385 | 482 | 3.75e-42 | 155 |
| MS.gene57127.t1 | MTR_3g079340 | 26.453 | 344 | 195 | 11 | 86 | 393 | 276 | 597 | 2.47e-20 | 94.0 |
| MS.gene57127.t1 | MTR_3g078633 | 25.753 | 365 | 207 | 14 | 86 | 409 | 275 | 616 | 2.85e-18 | 87.4 |
| MS.gene57127.t1 | MTR_3g078633 | 25.753 | 365 | 207 | 14 | 86 | 409 | 203 | 544 | 5.75e-18 | 86.7 |
| MS.gene57127.t1 | MTR_8g494200 | 24.294 | 354 | 210 | 12 | 89 | 400 | 274 | 611 | 1.78e-17 | 85.1 |
| MS.gene57127.t1 | MTR_8g494200 | 43.011 | 93 | 50 | 3 | 1 | 91 | 121 | 212 | 3.52e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57127.t1 | AT5G14930 | 41.608 | 423 | 209 | 16 | 11 | 422 | 139 | 534 | 2.17e-88 | 278 |
| MS.gene57127.t1 | AT3G52430 | 27.252 | 433 | 247 | 15 | 12 | 400 | 112 | 520 | 1.04e-33 | 132 |
| MS.gene57127.t1 | AT5G14930 | 56.522 | 92 | 36 | 2 | 11 | 102 | 139 | 226 | 4.16e-25 | 103 |
| MS.gene57127.t1 | AT3G48080 | 24.069 | 349 | 217 | 9 | 86 | 394 | 264 | 604 | 4.22e-15 | 77.8 |
Find 67 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTTCATTCAGTTTCT+TGG | 0.135337 | 6.2:-4013271 | None:intergenic |
| ATCCAAACACTTCAAATATT+TGG | 0.140476 | 6.2:+4013593 | MS.gene57127:CDS |
| GAATTTGAGGACTATGTTTA+TGG | 0.218467 | 6.2:+4013798 | MS.gene57127:CDS |
| TGACTATAGATTCTTGCTTT+TGG | 0.226808 | 6.2:+4013694 | MS.gene57127:CDS |
| CCATATCACGTAGTTCTAAT+TGG | 0.247644 | 6.2:+4010913 | MS.gene57127:CDS |
| GTAACTCCATTGATTGTTAC+TGG | 0.248986 | 6.2:+4010759 | MS.gene57127:CDS |
| AATTACGATTCACTTGTAAT+TGG | 0.255243 | 6.2:+4011241 | MS.gene57127:CDS |
| ATAGAATACTCACAAATTAT+TGG | 0.261631 | 6.2:+4013409 | MS.gene57127:CDS |
| CCAATTAGAACTACGTGATA+TGG | 0.262315 | 6.2:-4010913 | None:intergenic |
| CTCCAAATATTTGAAGTGTT+TGG | 0.275295 | 6.2:-4013595 | None:intergenic |
| TAGAATACTCACAAATTATT+GGG | 0.326023 | 6.2:+4013410 | MS.gene57127:CDS |
| GTAACAATCAATGGAGTTAC+TGG | 0.331199 | 6.2:-4010756 | None:intergenic |
| GGATTCGAATCAGCTGAGTA+TGG | 0.341801 | 6.2:+4011148 | MS.gene57127:intron |
| AACGCTGCACCTTCTCTTTG+AGG | 0.345002 | 6.2:-4013462 | None:intergenic |
| GAATAACTATAAACATGTTA+AGG | 0.348895 | 6.2:+4013887 | MS.gene57127:CDS |
| AAAGATTACGCAGTATGGTT+TGG | 0.374336 | 6.2:+4013956 | MS.gene57127:CDS |
| CTATGTTTATGGTTTGCTTA+AGG | 0.380016 | 6.2:+4013809 | MS.gene57127:CDS |
| AAGATTACGCAGTATGGTTT+GGG | 0.381632 | 6.2:+4013957 | MS.gene57127:CDS |
| CCATTGATTGTTACTGGAAA+AGG | 0.396055 | 6.2:+4010765 | MS.gene57127:CDS |
| ATCACAAACTACATGCCTTT+CGG | 0.398239 | 6.2:+4010990 | MS.gene57127:CDS |
| TAGTATTGAGCAATAGCTAA+TGG | 0.411284 | 6.2:-4013534 | None:intergenic |
| ACTTGCATGCAAAGAGTTGA+AGG | 0.412326 | 6.2:+4013737 | MS.gene57127:CDS |
| ACATTTGGTTCACCTCTTGT+TGG | 0.416180 | 6.2:+4010870 | MS.gene57127:CDS |
| GATGGAAAGATTACGCAGTA+TGG | 0.420032 | 6.2:+4013951 | MS.gene57127:CDS |
| CGACCACTATGCATCACATT+TGG | 0.424066 | 6.2:+4010855 | MS.gene57127:CDS |
| GAATACATTAGTTGAATTTG+AGG | 0.425511 | 6.2:+4013785 | MS.gene57127:CDS |
| CAAATATTTGGAGGAATGGT+TGG | 0.438509 | 6.2:+4013605 | MS.gene57127:CDS |
| GTTCACCTCTTGTTGGTGAC+AGG | 0.438927 | 6.2:+4010877 | MS.gene57127:CDS |
| ATTGTTACTGGAAAAGGCCT+TGG | 0.443639 | 6.2:+4010771 | MS.gene57127:CDS |
| ACTTCAAATATTTGGAGGAA+TGG | 0.446817 | 6.2:+4013601 | MS.gene57127:CDS |
| ATTTCATTCAGTTTCTTGGA+TGG | 0.448594 | 6.2:-4013267 | None:intergenic |
| TTTCGCACTCGATGGCTCTT+CGG | 0.451840 | 6.2:+4013483 | MS.gene57127:CDS |
| TGTCAAGGATTCTTCTCTGC+TGG | 0.456873 | 6.2:+4011204 | MS.gene57127:CDS |
| CTTCTCTGCTGGCAGGAGAC+AGG | 0.459312 | 6.2:+4011215 | MS.gene57127:CDS |
| CTTGCAATGATCCACTTCCT+AGG | 0.466767 | 6.2:+4010961 | MS.gene57127:CDS |
| AATAACTATAAACATGTTAA+GGG | 0.468821 | 6.2:+4013888 | MS.gene57127:CDS |
| GACATATGGCGCTGCTTGAA+TGG | 0.473376 | 6.2:+4013295 | MS.gene57127:CDS |
| GTTACTGGAAAAGGCCTTGG+AGG | 0.482581 | 6.2:+4010774 | MS.gene57127:CDS |
| GTTAACTTCATGAACGATGA+TGG | 0.487432 | 6.2:+4013933 | MS.gene57127:CDS |
| CTTTGCCTCACGAAAATCTC+AGG | 0.495525 | 6.2:-4013846 | None:intergenic |
| GAATGAAATGAAGCGACATA+TGG | 0.505636 | 6.2:+4013281 | MS.gene57127:CDS |
| TTGCAGTTGCAGAGAACACT+AGG | 0.508408 | 6.2:+4011271 | MS.gene57127:CDS |
| AAGGATTCTTCTCTGCTGGC+AGG | 0.509451 | 6.2:+4011208 | MS.gene57127:CDS |
| CGCACTCGATGGCTCTTCGG+TGG | 0.520799 | 6.2:+4013486 | MS.gene57127:CDS |
| GTGATGAATCGCCTAGGAAG+TGG | 0.523803 | 6.2:-4010972 | None:intergenic |
| TGAATCAGAACAAAAGAGAA+AGG | 0.528847 | 6.2:-4011015 | None:intergenic |
| CAAACACTTCAAATATTTGG+AGG | 0.531767 | 6.2:+4013596 | MS.gene57127:CDS |
| ATTGCTCAATACTATAAAGA+AGG | 0.533061 | 6.2:+4013543 | MS.gene57127:CDS |
| ATGAGATAAATAGTACAAGT+AGG | 0.548568 | 6.2:+4013652 | MS.gene57127:CDS |
| TTGGGAAAAGATAGTTGAAG+AGG | 0.552287 | 6.2:+4013428 | MS.gene57127:CDS |
| AGGATTGACATCACACATGC+TGG | 0.559723 | 6.2:+4011291 | MS.gene57127:CDS |
| ATATTTGGAGGAATGGTTGG+AGG | 0.559966 | 6.2:+4013608 | MS.gene57127:CDS |
| GGCAAAGTAGCTATATGAGT+TGG | 0.567968 | 6.2:+4013862 | MS.gene57127:CDS |
| GATTCGAATCAGCTGAGTAT+GGG | 0.571489 | 6.2:+4011149 | MS.gene57127:CDS |
| GTGCAGCGTTTCGCACTCGA+TGG | 0.587772 | 6.2:+4013475 | MS.gene57127:CDS |
| GAAATGAAGCCTCAAAGAGA+AGG | 0.600996 | 6.2:+4013453 | MS.gene57127:CDS |
| GCTCAATACTATAAAGAAGG+TGG | 0.607324 | 6.2:+4013546 | MS.gene57127:CDS |
| GGTTGTGAAAGACAAAGAAG+AGG | 0.608796 | 6.2:+4013758 | MS.gene57127:CDS |
| ATATCACTATTAGACAACAT+TGG | 0.614599 | 6.2:+4010819 | MS.gene57127:CDS |
| AAAGTAGCTATATGAGTTGG+TGG | 0.616200 | 6.2:+4013865 | MS.gene57127:CDS |
| GTGAAGCTATTGATCCTCCA+AGG | 0.619372 | 6.2:-4010788 | None:intergenic |
| AACTTCCTGTCACCAACAAG+AGG | 0.623157 | 6.2:-4010882 | None:intergenic |
| TAGTTTGTGATGAATCGCCT+AGG | 0.624261 | 6.2:-4010978 | None:intergenic |
| GGGAATTTAATCGAAGAACT+CGG | 0.639424 | 6.2:+4011169 | MS.gene57127:CDS |
| CAAAAGAGAAAGGTTCCGAA+AGG | 0.642724 | 6.2:-4011005 | None:intergenic |
| CGGATGTAAAACGATTGTCA+AGG | 0.662399 | 6.2:+4011189 | MS.gene57127:CDS |
| GAACCAAATGTGATGCATAG+TGG | 0.665505 | 6.2:-4010858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAAAAAATTCA+AGG | + | chr6.2:4011127-4011146 | MS.gene57127:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr6.2:4012885-4012904 | MS.gene57127:intron | 10.0% |
| !! | TCGATTAATTAAATATTTAA+TGG | + | chr6.2:4012234-4012253 | MS.gene57127:intron | 10.0% |
| !! | TTAAATATTTAATTAATCGA+TGG | - | chr6.2:4012234-4012253 | None:intergenic | 10.0% |
| !! | AAAACAAAAAATCTTAACAT+AGG | + | chr6.2:4013327-4013346 | MS.gene57127:CDS | 15.0% |
| !! | AAACAAAAAATCTTAACATA+GGG | + | chr6.2:4013328-4013347 | MS.gene57127:CDS | 15.0% |
| !! | AATAACTATAAACATGTTAA+GGG | + | chr6.2:4013888-4013907 | MS.gene57127:CDS | 15.0% |
| !! | CCTATTTATAAAAGAAAATT+TGG | - | chr6.2:4013068-4013087 | None:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | chr6.2:4012781-4012800 | None:intergenic | 15.0% |
| !! | TCTTATTATAAGAAAAAGTT+GGG | + | chr6.2:4012983-4013002 | MS.gene57127:intron | 15.0% |
| !!! | CCAAATTTTCTTTTATAAAT+AGG | + | chr6.2:4013065-4013084 | MS.gene57127:intron | 15.0% |
| !!! | TTAGAATATTTTACTCTATT+CGG | - | chr6.2:4013092-4013111 | None:intergenic | 15.0% |
| !!! | TTTTAATATTAAAAAGGTGT+GGG | + | chr6.2:4011959-4011978 | MS.gene57127:intron | 15.0% |
| !!! | TTTTTAATATTAAAAAGGTG+TGG | + | chr6.2:4011958-4011977 | MS.gene57127:intron | 15.0% |
| !! | ATAGAATACTCACAAATTAT+TGG | + | chr6.2:4013409-4013428 | MS.gene57127:CDS | 20.0% |
| !! | ATTATTTCCAAATTAGAATC+AGG | - | chr6.2:4011062-4011081 | None:intergenic | 20.0% |
| !! | GAATAACTATAAACATGTTA+AGG | + | chr6.2:4013887-4013906 | MS.gene57127:CDS | 20.0% |
| !! | TAACCAATTAACAGAATAAT+AGG | - | chr6.2:4012187-4012206 | None:intergenic | 20.0% |
| !! | TAGAATACTCACAAATTATT+GGG | + | chr6.2:4013410-4013429 | MS.gene57127:CDS | 20.0% |
| !! | TATCTACTAATATAAACACT+TGG | - | chr6.2:4011557-4011576 | None:intergenic | 20.0% |
| !! | TCATTTAATTAAACCACATT+AGG | + | chr6.2:4011353-4011372 | MS.gene57127:intron | 20.0% |
| !! | TGTTATAGAAATAACTTACA+GGG | - | chr6.2:4011428-4011447 | None:intergenic | 20.0% |
| !! | TTGTTATAGAAATAACTTAC+AGG | - | chr6.2:4011429-4011448 | None:intergenic | 20.0% |
| !!! | ACTTTTTCTTATAATAAGAC+CGG | - | chr6.2:4012982-4013001 | None:intergenic | 20.0% |
| !!! | ATTGAACATGTATTTTGAAA+CGG | - | chr6.2:4012722-4012741 | None:intergenic | 20.0% |
| !!! | ATTTTTAACCTTTTAAGACT+CGG | + | chr6.2:4012948-4012967 | MS.gene57127:intron | 20.0% |
| !!! | GTCTTATTATAAGAAAAAGT+TGG | + | chr6.2:4012982-4013001 | MS.gene57127:intron | 20.0% |
| !!! | TCAACAAAAGTTGATATATT+TGG | + | chr6.2:4013006-4013025 | MS.gene57127:intron | 20.0% |
| !!! | TGTACTATTTATCTCATTTT+TGG | - | chr6.2:4013649-4013668 | None:intergenic | 20.0% |
| ! | AATTACGATTCACTTGTAAT+TGG | + | chr6.2:4011241-4011260 | MS.gene57127:CDS | 25.0% |
| ! | AGAAATTTGTGTGAGATATT+AGG | - | chr6.2:4011885-4011904 | None:intergenic | 25.0% |
| ! | ATATCACTATTAGACAACAT+TGG | + | chr6.2:4010819-4010838 | MS.gene57127:CDS | 25.0% |
| ! | ATCCAAACACTTCAAATATT+TGG | + | chr6.2:4013593-4013612 | MS.gene57127:CDS | 25.0% |
| ! | ATGAGATAAATAGTACAAGT+AGG | + | chr6.2:4013652-4013671 | MS.gene57127:CDS | 25.0% |
| ! | ATTGCTCAATACTATAAAGA+AGG | + | chr6.2:4013543-4013562 | MS.gene57127:CDS | 25.0% |
| ! | CGATTATTAGTAGTTAATGT+TGG | + | chr6.2:4012507-4012526 | MS.gene57127:intron | 25.0% |
| ! | CGTACAAAAAATATTAAACC+AGG | - | chr6.2:4012447-4012466 | None:intergenic | 25.0% |
| ! | GAATACATTAGTTGAATTTG+AGG | + | chr6.2:4013785-4013804 | MS.gene57127:CDS | 25.0% |
| ! | GTAGAAAAATCAGAAATTGA+AGG | + | chr6.2:4012579-4012598 | MS.gene57127:intron | 25.0% |
| ! | TAGTACAAGTAGGAAAAATA+TGG | + | chr6.2:4013662-4013681 | MS.gene57127:CDS | 25.0% |
| ! | TTAATTAAACCACATTAGGT+TGG | + | chr6.2:4011357-4011376 | MS.gene57127:intron | 25.0% |
| ! | TTCATCAAAAACAATACAGA+TGG | + | chr6.2:4011682-4011701 | MS.gene57127:intron | 25.0% |
| !! | GAAGCATTTATAATCTTGTT+AGG | - | chr6.2:4013123-4013142 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | - | chr6.2:4013045-4013064 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACTATGCCCTTA+TGG | - | chr6.2:4012276-4012295 | None:intergenic | 25.0% |
| AAAAAAGTTCATCTCCAATG+GGG | + | chr6.2:4012034-4012053 | MS.gene57127:intron | 30.0% | |
| AAAATGCATGGACAAAATCA+AGG | + | chr6.2:4011095-4011114 | MS.gene57127:intron | 30.0% | |
| AATATGTGAAGTGGTTAACT+TGG | + | chr6.2:4012925-4012944 | MS.gene57127:intron | 30.0% | |
| AATCAGAAATTGAAGGTTCA+AGG | + | chr6.2:4012586-4012605 | MS.gene57127:intron | 30.0% | |
| ACTTCAAATATTTGGAGGAA+TGG | + | chr6.2:4013601-4013620 | MS.gene57127:CDS | 30.0% | |
| ATCCAAACAGACTTCAAAAT+TGG | + | chr6.2:4011619-4011638 | MS.gene57127:intron | 30.0% | |
| ATTTCATTCAGTTTCTTGGA+TGG | - | chr6.2:4013270-4013289 | None:intergenic | 30.0% | |
| CAAAAAAGTTCATCTCCAAT+GGG | + | chr6.2:4012033-4012052 | MS.gene57127:intron | 30.0% | |
| CAAACACTTCAAATATTTGG+AGG | + | chr6.2:4013596-4013615 | MS.gene57127:CDS | 30.0% | |
| CAATAAATGCGTAATTACCT+TGG | + | chr6.2:4012530-4012549 | MS.gene57127:intron | 30.0% | |
| CTTCATTTCATTCAGTTTCT+TGG | - | chr6.2:4013274-4013293 | None:intergenic | 30.0% | |
| GAATTTGAGGACTATGTTTA+TGG | + | chr6.2:4013798-4013817 | MS.gene57127:CDS | 30.0% | |
| GATCAGATTCTAGTAGTTAT+TGG | + | chr6.2:4011384-4011403 | MS.gene57127:intron | 30.0% | |
| GCTCCTATTATTCTGTTAAT+TGG | + | chr6.2:4012181-4012200 | MS.gene57127:intron | 30.0% | |
| TCTTATAATAAGACCGGAAT+AGG | - | chr6.2:4012976-4012995 | None:intergenic | 30.0% | |
| TGAATCAGAACAAAAGAGAA+AGG | - | chr6.2:4011018-4011037 | None:intergenic | 30.0% | |
| TGAGAATCCTGATTCTAATT+TGG | + | chr6.2:4011052-4011071 | MS.gene57127:intron | 30.0% | |
| ! | AGATGTTTTCGTAAACTATC+TGG | + | chr6.2:4011490-4011509 | MS.gene57127:intron | 30.0% |
| ! | CAAATGATGTCTTCTTTTGA+AGG | - | chr6.2:4013245-4013264 | None:intergenic | 30.0% |
| ! | CTCCAAATATTTGAAGTGTT+TGG | - | chr6.2:4013598-4013617 | None:intergenic | 30.0% |
| ! | GATGTTTTCGTAAACTATCT+GGG | + | chr6.2:4011491-4011510 | MS.gene57127:intron | 30.0% |
| ! | TAGTATTGAGCAATAGCTAA+TGG | - | chr6.2:4013537-4013556 | None:intergenic | 30.0% |
| ! | TGACTATAGATTCTTGCTTT+TGG | + | chr6.2:4013694-4013713 | MS.gene57127:CDS | 30.0% |
| ! | TTTCTCTTTTGTTCTGATTC+AGG | + | chr6.2:4011017-4011036 | MS.gene57127:CDS | 30.0% |
| !! | CACATTTCTAAAATTGACTC+TGG | + | chr6.2:4013148-4013167 | MS.gene57127:intron | 30.0% |
| !! | CAGAGTCAATTTTAGAAATG+TGG | - | chr6.2:4013150-4013169 | None:intergenic | 30.0% |
| !! | CCATTTTTGCGTACTTAAAT+GGG | + | chr6.2:4011789-4011808 | MS.gene57127:intron | 30.0% |
| !! | CTATGTTTATGGTTTGCTTA+AGG | + | chr6.2:4013809-4013828 | MS.gene57127:CDS | 30.0% |
| !! | GACTATAGATTCTTGCTTTT+GGG | + | chr6.2:4013695-4013714 | MS.gene57127:CDS | 30.0% |
| !! | TCCATTTTTGCGTACTTAAA+TGG | + | chr6.2:4011788-4011807 | MS.gene57127:intron | 30.0% |
| !!! | AACCAATTTTGAAGTCTGTT+TGG | - | chr6.2:4011624-4011643 | None:intergenic | 30.0% |
| !!! | AAGGGCATAGTTTTAAAAAC+CGG | + | chr6.2:4012277-4012296 | MS.gene57127:intron | 30.0% |
| !!! | ATTGGAGATGAACTTTTTTG+GGG | - | chr6.2:4012033-4012052 | None:intergenic | 30.0% |
| !!! | CATTGGAGATGAACTTTTTT+GGG | - | chr6.2:4012034-4012053 | None:intergenic | 30.0% |
| !!! | GGTTTTAACCTTTTAAGACT+CGG | - | chr6.2:4012074-4012093 | None:intergenic | 30.0% |
| AAAAAGTTCATCTCCAATGG+GGG | + | chr6.2:4012035-4012054 | MS.gene57127:intron | 35.0% | |
| AAAAATGGATGTCTCCATTG+TGG | - | chr6.2:4011777-4011796 | None:intergenic | 35.0% | |
| AAAGATTACGCAGTATGGTT+TGG | + | chr6.2:4013956-4013975 | MS.gene57127:CDS | 35.0% | |
| AAAGGTTAAAACCCTTCCAT+TGG | + | chr6.2:4012081-4012100 | MS.gene57127:intron | 35.0% | |
| AAGATTACGCAGTATGGTTT+GGG | + | chr6.2:4013957-4013976 | MS.gene57127:CDS | 35.0% | |
| AATTGAAGGTTCAAGGTTCA+AGG | + | chr6.2:4012593-4012612 | MS.gene57127:intron | 35.0% | |
| ATCACAAACTACATGCCTTT+CGG | + | chr6.2:4010990-4011009 | MS.gene57127:CDS | 35.0% | |
| CAAATATTTGGAGGAATGGT+TGG | + | chr6.2:4013605-4013624 | MS.gene57127:CDS | 35.0% | |
| CCAAAAAAGTTCATCTCCAA+TGG | + | chr6.2:4012032-4012051 | MS.gene57127:intron | 35.0% | |
| CCAATTAGAACTACGTGATA+TGG | - | chr6.2:4010916-4010935 | None:intergenic | 35.0% | |
| CCCATTTAAGTACGCAAAAA+TGG | - | chr6.2:4011792-4011811 | None:intergenic | 35.0% | |
| GAATGAAATGAAGCGACATA+TGG | + | chr6.2:4013281-4013300 | MS.gene57127:CDS | 35.0% | |
| GCTCAATACTATAAAGAAGG+TGG | + | chr6.2:4013546-4013565 | MS.gene57127:CDS | 35.0% | |
| GGGAATTTAATCGAAGAACT+CGG | + | chr6.2:4011169-4011188 | MS.gene57127:CDS | 35.0% | |
| GTAACAATCAATGGAGTTAC+TGG | - | chr6.2:4010759-4010778 | None:intergenic | 35.0% | |
| GTGACATTAAGCAAAATGCA+TGG | + | chr6.2:4011083-4011102 | MS.gene57127:intron | 35.0% | |
| GTGTGAGATATTAGGTTTGA+GGG | - | chr6.2:4011877-4011896 | None:intergenic | 35.0% | |
| GTTAACTTCATGAACGATGA+TGG | + | chr6.2:4013933-4013952 | MS.gene57127:CDS | 35.0% | |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr6.2:4012902-4012921 | MS.gene57127:intron | 35.0% | |
| TAAGACCCTCATTCTTAAGA+GGG | - | chr6.2:4011986-4012005 | None:intergenic | 35.0% | |
| TACTATCGTGTACGTGTATT+GGG | + | chr6.2:4012151-4012170 | MS.gene57127:intron | 35.0% | |
| TGATCTAAACCAACCTAATG+TGG | - | chr6.2:4011369-4011388 | None:intergenic | 35.0% | |
| TGTGTGAGATATTAGGTTTG+AGG | - | chr6.2:4011878-4011897 | None:intergenic | 35.0% | |
| TTAAGACCCTCATTCTTAAG+AGG | - | chr6.2:4011987-4012006 | None:intergenic | 35.0% | |
| TTAGTTTATCCCCACTTAGT+GGG | - | chr6.2:4011600-4011619 | None:intergenic | 35.0% | |
| TTGGGAAAAGATAGTTGAAG+AGG | + | chr6.2:4013428-4013447 | MS.gene57127:CDS | 35.0% | |
| ! | AAAGTAGCTATATGAGTTGG+TGG | + | chr6.2:4013865-4013884 | MS.gene57127:CDS | 35.0% |
| ! | ATTAGTTTATCCCCACTTAG+TGG | - | chr6.2:4011601-4011620 | None:intergenic | 35.0% |
| ! | CCATTGATTGTTACTGGAAA+AGG | + | chr6.2:4010765-4010784 | MS.gene57127:CDS | 35.0% |
| ! | CCTTTTCCAGTAACAATCAA+TGG | - | chr6.2:4010768-4010787 | None:intergenic | 35.0% |
| ! | GTAACTCCATTGATTGTTAC+TGG | + | chr6.2:4010759-4010778 | MS.gene57127:CDS | 35.0% |
| ! | TTTAAGACTCGGTACCTATT+AGG | - | chr6.2:4012978-4012959 | None:intergenic | 35.0% |
| !! | AATAGGTACCGAGTCTTAAA+AGG | + | chr6.2:4012063-4012082 | MS.gene57127:intron | 35.0% |
| !! | AATAGGTACCGAGTCTTAAA+AGG | - | chr6.2:4012082-4012063 | None:intergenic | 35.0% |
| !! | CCATATCACGTAGTTCTAAT+TGG | + | chr6.2:4010913-4010932 | MS.gene57127:CDS | 35.0% |
| !! | TATCTTTAGAGCATCCACAA+TGG | + | chr6.2:4011760-4011779 | MS.gene57127:intron | 35.0% |
| !!! | CATAGTTTTAAAAACCGGCT+CGG | + | chr6.2:4012282-4012301 | MS.gene57127:intron | 35.0% |
| !!! | CCATTGGAGATGAACTTTTT+TGG | - | chr6.2:4012035-4012054 | None:intergenic | 35.0% |
| !!! | GAACATGTATTTTGAAACGG+AGG | - | chr6.2:4012719-4012738 | None:intergenic | 35.0% |
| AACCAGGATAGCTCAAAAAC+CGG | - | chr6.2:4012431-4012450 | None:intergenic | 40.0% | |
| AAGTCAATGCAGATGTTCCA+AGG | - | chr6.2:4012550-4012569 | None:intergenic | 40.0% | |
| ACGGAGGAAGTAACATATAG+TGG | - | chr6.2:4012703-4012722 | None:intergenic | 40.0% | |
| ACTTGCATGCAAAGAGTTGA+AGG | + | chr6.2:4013737-4013756 | MS.gene57127:CDS | 40.0% | |
| ATAAGACCATCTCCAATGGA+AGG | - | chr6.2:4012096-4012115 | None:intergenic | 40.0% | |
| ATATTTGGAGGAATGGTTGG+AGG | + | chr6.2:4013608-4013627 | MS.gene57127:CDS | 40.0% | |
| ATCACATTCATGGTTCGAAC+TGG | - | chr6.2:4012350-4012369 | None:intergenic | 40.0% | |
| ATTGTTACTGGAAAAGGCCT+TGG | + | chr6.2:4010771-4010790 | MS.gene57127:CDS | 40.0% | |
| CAAAAGAGAAAGGTTCCGAA+AGG | - | chr6.2:4011008-4011027 | None:intergenic | 40.0% | |
| CGGATGTAAAACGATTGTCA+AGG | + | chr6.2:4011189-4011208 | MS.gene57127:CDS | 40.0% | |
| CGGTAAGACTCGTTAAAAAC+CGG | + | chr6.2:4012397-4012416 | MS.gene57127:intron | 40.0% | |
| CTAAATTAGTCACCGCTACA+CGG | - | chr6.2:4011725-4011744 | None:intergenic | 40.0% | |
| GAAATGAAGCCTCAAAGAGA+AGG | + | chr6.2:4013453-4013472 | MS.gene57127:CDS | 40.0% | |
| GAACCAAATGTGATGCATAG+TGG | - | chr6.2:4010861-4010880 | None:intergenic | 40.0% | |
| GATCGGTCATGTAATTAACC+CGG | + | chr6.2:4012367-4012386 | MS.gene57127:intron | 40.0% | |
| GATGGAAAGATTACGCAGTA+TGG | + | chr6.2:4013951-4013970 | MS.gene57127:CDS | 40.0% | |
| GATTCGAATCAGCTGAGTAT+GGG | + | chr6.2:4011149-4011168 | MS.gene57127:CDS | 40.0% | |
| GGCAAAGTAGCTATATGAGT+TGG | + | chr6.2:4013862-4013881 | MS.gene57127:CDS | 40.0% | |
| GGTTGTGAAAGACAAAGAAG+AGG | + | chr6.2:4013758-4013777 | MS.gene57127:CDS | 40.0% | |
| GTACTATCGTGTACGTGTAT+TGG | + | chr6.2:4012150-4012169 | MS.gene57127:intron | 40.0% | |
| GTGCATTGGAATATGTGAAG+TGG | + | chr6.2:4012916-4012935 | MS.gene57127:intron | 40.0% | |
| GTTCGAACCATGAATGTGAT+CGG | + | chr6.2:4012350-4012369 | MS.gene57127:intron | 40.0% | |
| TAAAACCCTTCCATTGGAGA+TGG | + | chr6.2:4012087-4012106 | MS.gene57127:intron | 40.0% | |
| TAAGACCATCTCCAATGGAA+GGG | - | chr6.2:4012095-4012114 | None:intergenic | 40.0% | |
| TACATGACCGATCACATTCA+TGG | - | chr6.2:4012360-4012379 | None:intergenic | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | chr6.2:4011588-4011607 | MS.gene57127:intron | 40.0% |
| ! | ACATTTGGTTCACCTCTTGT+TGG | + | chr6.2:4010870-4010889 | MS.gene57127:CDS | 40.0% |
| ! | AGATGCTAACTTGTGCCATA+AGG | + | chr6.2:4012258-4012277 | MS.gene57127:intron | 40.0% |
| ! | ATCGATGGACTCAATATGAG+TGG | - | chr6.2:4012219-4012238 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | chr6.2:4011587-4011606 | MS.gene57127:intron | 40.0% |
| ! | CGGTTTTTAACGAGTCTTAC+CGG | - | chr6.2:4012399-4012418 | None:intergenic | 40.0% |
| ! | GATGCTAACTTGTGCCATAA+GGG | + | chr6.2:4012259-4012278 | MS.gene57127:intron | 40.0% |
| ! | TAGTTTGTGATGAATCGCCT+AGG | - | chr6.2:4010981-4011000 | None:intergenic | 40.0% |
| ! | TTAAGACTCGGTACCTATTC+CGG | + | chr6.2:4012960-4012979 | MS.gene57127:intron | 40.0% |
| !! | GTGATTCACTTTTATGCCCA+TGG | - | chr6.2:4012626-4012645 | None:intergenic | 40.0% |
| !! | TGCTCTAAAGATACTGGTTG+AGG | - | chr6.2:4011753-4011772 | None:intergenic | 40.0% |
| !! | TGTGGATGCTCTAAAGATAC+TGG | - | chr6.2:4011759-4011778 | None:intergenic | 40.0% |
| AACTTCCTGTCACCAACAAG+AGG | - | chr6.2:4010885-4010904 | None:intergenic | 45.0% | |
| AGGATTGACATCACACATGC+TGG | + | chr6.2:4011291-4011310 | MS.gene57127:CDS | 45.0% | |
| AGGCATAAGACCATCTCCAA+TGG | - | chr6.2:4012100-4012119 | None:intergenic | 45.0% | |
| AGGTTCAAGGTTTCGAACCA+TGG | + | chr6.2:4012606-4012625 | MS.gene57127:intron | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | - | chr6.2:4011589-4011608 | None:intergenic | 45.0% | |
| CGACCACTATGCATCACATT+TGG | + | chr6.2:4010855-4010874 | MS.gene57127:CDS | 45.0% | |
| CTCCATCTGAAGAGAACTTG+AGG | - | chr6.2:4012120-4012139 | None:intergenic | 45.0% | |
| CTCGTTAAAAACCGGTGACT+CGG | + | chr6.2:4012405-4012424 | MS.gene57127:intron | 45.0% | |
| CTTCAGATGGAGAGAAGACA+GGG | + | chr6.2:4012128-4012147 | MS.gene57127:intron | 45.0% | |
| CTTGCAATGATCCACTTCCT+AGG | + | chr6.2:4010961-4010980 | MS.gene57127:CDS | 45.0% | |
| CTTTGCCTCACGAAAATCTC+AGG | - | chr6.2:4013849-4013868 | None:intergenic | 45.0% | |
| GGATTCGAATCAGCTGAGTA+TGG | + | chr6.2:4011148-4011167 | MS.gene57127:intron | 45.0% | |
| GGTTCAAGGTTTCGAACCAT+GGG | + | chr6.2:4012607-4012626 | MS.gene57127:intron | 45.0% | |
| GTAATTAACCCGGCGTAAAC+CGG | + | chr6.2:4012377-4012396 | MS.gene57127:intron | 45.0% | |
| GTGAAGCTATTGATCCTCCA+AGG | - | chr6.2:4010791-4010810 | None:intergenic | 45.0% | |
| TACCTATTAGGTACCCCCAT+TGG | - | chr6.2:4012051-4012070 | None:intergenic | 45.0% | |
| TCTTCAGATGGAGAGAAGAC+AGG | + | chr6.2:4012127-4012146 | MS.gene57127:intron | 45.0% | |
| TGCCTCAAGTTCTCTTCAGA+TGG | + | chr6.2:4012115-4012134 | MS.gene57127:intron | 45.0% | |
| TGGGTCCCTCTTAAGAATGA+GGG | + | chr6.2:4011978-4011997 | MS.gene57127:intron | 45.0% | |
| TGTCAAGGATTCTTCTCTGC+TGG | + | chr6.2:4011204-4011223 | MS.gene57127:CDS | 45.0% | |
| TTGCAGTTGCAGAGAACACT+AGG | + | chr6.2:4011271-4011290 | MS.gene57127:CDS | 45.0% | |
| ! | AGACAAGTATTGCCGTGTAG+CGG | + | chr6.2:4011710-4011729 | MS.gene57127:intron | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | chr6.2:4011586-4011605 | MS.gene57127:intron | 45.0% |
| ! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6.2:4013710-4013729 | MS.gene57127:CDS | 45.0% |
| ! | TGTCTCCTGAGATTTTCGTG+AGG | + | chr6.2:4013841-4013860 | MS.gene57127:CDS | 45.0% |
| !!! | TTTTAAAAACCGGCTCGGAC+CGG | + | chr6.2:4012287-4012306 | MS.gene57127:intron | 45.0% |
| !!! | TCAATTTTTTAATATTAAAA+AGG | + | chr6.2:4011953-4011972 | MS.gene57127:intron | 5.0% |
| AACGCTGCACCTTCTCTTTG+AGG | - | chr6.2:4013465-4013484 | None:intergenic | 50.0% | |
| AAGGATTCTTCTCTGCTGGC+AGG | + | chr6.2:4011208-4011227 | MS.gene57127:CDS | 50.0% | |
| AGGGTCTTAAGTGAGACCAC+GGG | + | chr6.2:4011997-4012016 | MS.gene57127:intron | 50.0% | |
| GACATATGGCGCTGCTTGAA+TGG | + | chr6.2:4013295-4013314 | MS.gene57127:CDS | 50.0% | |
| GAGGGTCTTAAGTGAGACCA+CGG | + | chr6.2:4011996-4012015 | MS.gene57127:intron | 50.0% | |
| GTGATGAATCGCCTAGGAAG+TGG | - | chr6.2:4010975-4010994 | None:intergenic | 50.0% | |
| GTGGGTCCCTCTTAAGAATG+AGG | + | chr6.2:4011977-4011996 | MS.gene57127:intron | 50.0% | |
| GTTACTGGAAAAGGCCTTGG+AGG | + | chr6.2:4010774-4010793 | MS.gene57127:CDS | 50.0% | |
| TTTCGCACTCGATGGCTCTT+CGG | + | chr6.2:4013483-4013502 | MS.gene57127:CDS | 50.0% | |
| ! | TTAAAAACCGGTGACTCGGC+CGG | + | chr6.2:4012409-4012428 | MS.gene57127:intron | 50.0% |
| ! | TTGGGGTCTTATAAGACCCG+TGG | - | chr6.2:4012016-4012035 | None:intergenic | 50.0% |
| !! | CTCCAATGGGGGTACCTAAT+AGG | + | chr6.2:4012046-4012065 | MS.gene57127:intron | 50.0% |
| !! | GTTCACCTCTTGTTGGTGAC+AGG | + | chr6.2:4010877-4010896 | MS.gene57127:CDS | 50.0% |
| GTTCGAACTGGCATACCGTC+CGG | - | chr6.2:4012338-4012357 | None:intergenic | 55.0% | |
| TCAAAAACCGGCCGAGTCAC+CGG | - | chr6.2:4012419-4012438 | None:intergenic | 55.0% | |
| !! | CGAGTCTTACCGGTTTACGC+CGG | - | chr6.2:4012389-4012408 | None:intergenic | 55.0% |
| !! | GAGTCTTACCGGTTTACGCC+GGG | - | chr6.2:4012388-4012407 | None:intergenic | 55.0% |
| !! | GGCCGGTTTTTGAGCTATCC+TGG | + | chr6.2:4012426-4012445 | MS.gene57127:intron | 55.0% |
| CATACCGTCCGGTTCCCAGT+CGG | - | chr6.2:4012327-4012346 | None:intergenic | 60.0% | |
| CTTCTCTGCTGGCAGGAGAC+AGG | + | chr6.2:4011215-4011234 | MS.gene57127:CDS | 60.0% | |
| GTGCAGCGTTTCGCACTCGA+TGG | + | chr6.2:4013475-4013494 | MS.gene57127:CDS | 60.0% | |
| CCGGTTGAACCGGTCCGACT+GGG | + | chr6.2:4012310-4012329 | MS.gene57127:intron | 65.0% | |
| CGCACTCGATGGCTCTTCGG+TGG | + | chr6.2:4013486-4013505 | MS.gene57127:CDS | 65.0% | |
| GAACCGGTCCGACTGGGAAC+CGG | + | chr6.2:4012316-4012335 | MS.gene57127:intron | 65.0% | |
| ! | CCCAGTCGGACCGGTTCAAC+CGG | - | chr6.2:4012313-4012332 | None:intergenic | 65.0% |
| !! | AAAAACCGGCTCGGACCGGC+CGG | + | chr6.2:4012291-4012310 | MS.gene57127:intron | 65.0% |
| CGGTCCGACTGGGAACCGGA+CGG | + | chr6.2:4012320-4012339 | MS.gene57127:intron | 70.0% | |
| CGTCCGGTTCCCAGTCGGAC+CGG | - | chr6.2:4012322-4012341 | None:intergenic | 70.0% | |
| CTCGGACCGGCCGGTTGAAC+CGG | + | chr6.2:4012300-4012319 | MS.gene57127:intron | 70.0% | |
| GCCGGTTGAACCGGTCCGAC+TGG | + | chr6.2:4012309-4012328 | MS.gene57127:intron | 70.0% | |
| TTCAACCGGCCGGTCCGAGC+CGG | - | chr6.2:4012299-4012318 | None:intergenic | 70.0% | |
| ! | GTCGGACCGGTTCAACCGGC+CGG | - | chr6.2:4012309-4012328 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 4010735 | 4013998 | 4010735 | ID=MS.gene57127 |
| chr6.2 | mRNA | 4010735 | 4013998 | 4010735 | ID=MS.gene57127.t1;Parent=MS.gene57127 |
| chr6.2 | exon | 4010735 | 4011038 | 4010735 | ID=MS.gene57127.t1.exon1;Parent=MS.gene57127.t1 |
| chr6.2 | CDS | 4010735 | 4011038 | 4010735 | ID=cds.MS.gene57127.t1;Parent=MS.gene57127.t1 |
| chr6.2 | exon | 4011149 | 4011312 | 4011149 | ID=MS.gene57127.t1.exon2;Parent=MS.gene57127.t1 |
| chr6.2 | CDS | 4011149 | 4011312 | 4011149 | ID=cds.MS.gene57127.t1;Parent=MS.gene57127.t1 |
| chr6.2 | exon | 4013177 | 4013998 | 4013177 | ID=MS.gene57127.t1.exon3;Parent=MS.gene57127.t1 |
| chr6.2 | CDS | 4013177 | 4013998 | 4013177 | ID=cds.MS.gene57127.t1;Parent=MS.gene57127.t1 |
| Gene Sequence |
| Protein sequence |
