AlfalfaGEDB | MS.gene57512

M. sativa cultivar XinJiangDaYe / MS.gene57512

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008289 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF01852.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57512.t1	XP_013444922.1	99.4	810	5	0	1	810	1	810	0.00E+00	1516.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57512.t1	Q0WV12	64.5	831	245	13	1	810	1	802	3.2e-275	949.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57512.t1	A0A072TNH2	99.4	810	5	0	1	810	1	810	0.0e+00	1516.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene57512.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050128	MS.gene57512	0.815792	7.71E-52	-1.69E-46
MS.gene050301	MS.gene57512	0.820581	6.36E-53	-1.69E-46
MS.gene052178	MS.gene57512	0.831397	1.71E-55	-1.69E-46
MS.gene052340	MS.gene57512	0.81625	6.09E-52	-1.69E-46
MS.gene053557	MS.gene57512	0.803221	3.87E-49	-1.69E-46
MS.gene053928	MS.gene57512	0.833483	5.20E-56	-1.69E-46
MS.gene054010	MS.gene57512	0.830568	2.73E-55	-1.69E-46
MS.gene054011	MS.gene57512	0.834464	2.95E-56	-1.69E-46
MS.gene054012	MS.gene57512	0.841643	4.20E-58	-1.69E-46
MS.gene054013	MS.gene57512	0.839973	1.15E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene57512.t1	MTR_8g432540	99.383	810	5	0	1	810	1	810	1664
MS.gene57512.t1	MTR_7g076080	81.305	797	114	13	30	810	1	778	1278
MS.gene57512.t1	MTR_1g101280	66.273	762	228	12	64	807	1	751	974
MS.gene57512.t1	MTR_2g088470	55.659	751	274	13	77	809	26	735	787
MS.gene57512.t1	MTR_4g047800	54.606	749	296	12	74	810	17	733	775
MS.gene57512.t1	MTR_0198s0030	53.138	749	322	12	77	806	13	751	761
MS.gene57512.t1	MTR_6g477820	49.513	719	320	11	115	810	29	727	674
MS.gene57512.t1	MTR_2g101720	45.833	696	326	11	119	809	143	792	631
MS.gene57512.t1	MTR_5g029320	44.489	753	377	19	79	810	49	781	621
MS.gene57512.t1	MTR_5g005600	43.742	743	367	14	77	806	12	716	566

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene57512.t1	AT4G00730	68.396	829	216	12	1	810	1	802	1103
MS.gene57512.t1	AT3G61150	65.625	832	239	18	1	810	1	807	1045
MS.gene57512.t1	AT4G04890	55.780	744	282	14	82	809	26	738	804
MS.gene57512.t1	AT4G04890	55.780	744	282	14	82	809	26	738	804
MS.gene57512.t1	AT4G21750	55.336	759	284	10	82	809	26	760	801
MS.gene57512.t1	AT4G21750	55.336	759	284	10	82	809	26	760	801
MS.gene57512.t1	AT4G21750	55.336	759	284	10	82	809	26	760	801
MS.gene57512.t1	AT4G21750	55.336	759	284	10	82	809	26	760	801
MS.gene57512.t1	AT1G05230	52.618	764	315	14	50	810	1	720	769
MS.gene57512.t1	AT1G05230	52.618	764	315	14	50	810	1	720	769

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Find 226 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGACAAGTTAAGTTT+TGG	0.327392	8.3:+61837901	MS.gene57512:CDS
AAACATGCATAGATGAGGCG+GGG	0.640450	8.3:+61842755	MS.gene57512:CDS
AAAGAAAACTTACACTAGCA+CGG	0.608182	8.3:-61842083	None:intergenic
AAAGATTGGAGCTTAGTAAA+AGG	0.282647	8.3:+61837868	MS.gene57512:CDS
AAATCAATGTTCAACTCACC+TGG	0.542999	8.3:+61837385	MS.gene57512:CDS
AAATCGAAGAACACAAATGA+AGG	0.532956	8.3:+61837929	MS.gene57512:CDS
AAATGGAACAAACTTAACCC+TGG	0.651008	8.3:+61841817	MS.gene57512:CDS
AACAACGAAAGAATGCCATT+TGG	0.490945	8.3:+61837319	MS.gene57512:CDS
AACAATTCAGGAGGTGGTGG+AGG	0.485870	8.3:+61837268	MS.gene57512:CDS
AACAGATTCAAGAACTTGAA+AGG	0.557302	8.3:+61837731	MS.gene57512:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACTTACACTAGCA+CGG	-	chr8.3:61842086-61842105	None:intergenic	30.0%
AAAGATTGGAGCTTAGTAAA+AGG	+	chr8.3:61837868-61837887	MS.gene57512:CDS	30.0%
AAAGTTCAGAACACAATGTA+TGG	-	chr8.3:61839593-61839612	None:intergenic	30.0%
AAATCGAAGAACACAAATGA+AGG	+	chr8.3:61837929-61837948	MS.gene57512:CDS	30.0%
AACAGATTCAAGAACTTGAA+AGG	+	chr8.3:61837731-61837750	MS.gene57512:CDS	30.0%
ACAATTGTACTAGACTCAAT+TGG	+	chr8.3:61838061-61838080	MS.gene57512:intron	30.0%
ACAGAAATTCAAGTGATAAG+AGG	-	chr8.3:61840323-61840342	None:intergenic	30.0%
ACCATTGTTCAAGTAATATG+TGG	+	chr8.3:61839954-61839973	MS.gene57512:intron	30.0%
AGAAAAAGTGGTAGTATCTT+TGG	+	chr8.3:61842573-61842592	MS.gene57512:intron	30.0%
AGAAAATCAAACAGTCTTTG+AGG	-	chr8.3:61841952-61841971	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	61837244	61843101	61837244	ID=MS.gene57512
chr8.3	mRNA	61837244	61843101	61837244	ID=MS.gene57512.t1;Parent=MS.gene57512
chr8.3	exon	61837244	61837423	61837244	ID=MS.gene57512.t1.exon1;Parent=MS.gene57512.t1
chr8.3	CDS	61837244	61837423	61837244	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61837538	61837752	61837538	ID=MS.gene57512.t1.exon2;Parent=MS.gene57512.t1
chr8.3	CDS	61837538	61837752	61837538	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61837833	61837950	61837833	ID=MS.gene57512.t1.exon3;Parent=MS.gene57512.t1
chr8.3	CDS	61837833	61837950	61837833	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61838074	61838748	61838074	ID=MS.gene57512.t1.exon4;Parent=MS.gene57512.t1
chr8.3	CDS	61838074	61838748	61838074	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61838968	61839069	61838968	ID=MS.gene57512.t1.exon5;Parent=MS.gene57512.t1
chr8.3	CDS	61838968	61839069	61838968	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61839248	61839460	61839248	ID=MS.gene57512.t1.exon6;Parent=MS.gene57512.t1
chr8.3	CDS	61839248	61839460	61839248	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61841312	61841486	61841312	ID=MS.gene57512.t1.exon7;Parent=MS.gene57512.t1
chr8.3	CDS	61841312	61841486	61841312	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61841725	61842092	61841725	ID=MS.gene57512.t1.exon8;Parent=MS.gene57512.t1
chr8.3	CDS	61841725	61842092	61841725	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1
chr8.3	exon	61842715	61843101	61842715	ID=MS.gene57512.t1.exon9;Parent=MS.gene57512.t1
chr8.3	CDS	61842715	61843101	61842715	ID=cds.MS.gene57512.t1;Parent=MS.gene57512.t1

Gene Sequence

>MS.gene57512

ATGAGTTTTGGGGGGTTTGTAGAGAACAATTCAGGAGGTGGTGGAGGTGTAAGAAACATAGGAGAAATCTCTTGCAACAACGAAAGAATGCCATTTGGTTCTTTCTCTCAACCTCGTCTTGTTACTTCACCAGCTTTGGCTAAATCAATGTTCAACTCACCTGGATTATCACTTGCACTTGTAAGAACTAAGAAAGATCTTGTTCTTTTTTGTTTGTTTTTGTTTTGTTAGTTTTCTTAAATTTTGTTGTGTTTTTTGATGACCCTTTTGATTTGTTTGATGGAAAAAATGAAGCAAACAAATATTGATGGACAAGAAGATGTGAATGGATCAATGCATGGGAATTATGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAGGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAGCAAGATGCTGATGACAAGCCTCCTAGGAAGAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAACTTGAAAGGTATTTTTCTTTTACCATTTTTGTGTTTTTGTTTTTAAGGTTCATTTTGTAGATTTTAATAATCATGTTTTGTGTTATAGTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGATTGGAGCTTAGTAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGGTGTGTGATATGACATCAAAAAGTCATTTTCATTTTCACATGGTTTTACTTTTTACTTACTTTTTGAGTTTTTCTTAATAACCTTTTTGTGTTGCTAACTTTTTGTTTGTACAATTGTACTAGACTCAATTGGAAAGGCATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATTTGTTCAAATTGCGGTGGTCCAGCTATGATCGGCGAGATTTCACTCGAGGAACAACACCTTCGAATCGAGAATGCAAGGTTGAAGGATGAGCTAGATAGAGTTTGTGCACTTGCTGGAAAGTTTTTAGGCCGTCCGATTTCTTCGTTACCAAATTCAAGTTTAGAGCTTGGTGTTGGAGGAAACAACAACAATGGTTTTAATGTGATGAATAATGTGCCTTCAACATTACCTGATTTTAGTTCAGGAATGTCTAATAACCCTTTAGCCATTGTGTCTCCTTCAAATAGACAAACATCTATGGTGACTACTGGTTTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAACTTGCTTTGGCTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAATGACCCTCTTTGGATTAGGAGTATAGAAGGAGGAAGGGAAATTTTGAACCATGAGGAATATTTGAGGACATTCACTCCTTGCATTGGTTTGAAACCTAATGGTTTTGTTTCTGAGGCCTCAAGGGAAACTGGTACTGTCATCATCAATAGCTTGGCCCTCGTCGAGACTCTTATGGACTCGGTGAGCTTCTAAACCCTTAATGTTATCGATGCAACCTCAATTGTGATCACAAAAATATAACAAACTTTGATGTCATGTTTCAGATTGGTTCTGATTGCAGTCTCAAACCATTTTCTTAAACATTGTGATCTTATATATATGAATTACAAATTGTTTTAGTGCTTTTCCCATTCTACGTAGAAATATAATTATGAATCTGACTTGGTTTTCTTTCAACAGAATCGATGGATAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACAAATGAAGTTATATCTAATGGAATAAATGGAACAAGAAATGGTGCACTTCAACTTGTAAGTAAAATTTGTTATGTTTTTACCGTAGTGCTAAATATCAATTATAGCGTAGCGGTATTTAAACAAACTGTTATTTCACACGATCCATGATTGACAACACTGGCATTACATGAATTAGCTCTAGCAAAACGGATGTATTTTCGGTGTTTTGACAGTAAAGTTTGTGTTTTTTCAGATGCAAGCTGAACTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAACATGCAGAAGGGGTTTGGGCTGTGGTTGACGTGTCTATAGATACCATCAGAGAAACTTCTGGTGCTACAAGTTTTGTGAACTGTAGGAAGCTTCCCTCTGGCTGTGTTGTGCAAGATATGCCAAATGGTTACTCCAAGGTAATTAAATTTCAAAAAATGCTTTCTTATTCTTGTTATTAGTGTGTTTTATGGTTTTTATAATCCCTACATTACATGTTTTTTAGTTTCCACATCTTCTTGTGGACAGTAAAAATGATTTACATTCCTCCATACATTGTGTTCTGAACTTTTTTATTTTAATATTAGGGAAATTTAGAGTTACTATTTACCATGAGGGCATCCTCACAGTTGAAGTCTGCTATGAGACTGATGAGTAGACAATGCCTAGGGTGTCTAGTCGATGTTTCTATTACGAGTTAAAACTATCAGTCATTTTGGTCCTTAAATGTGTTAGACGCCTTGCATTTATCTAAATTATAAAAACATTTCCGAATGTGTTTTTCGTTAATTAGTTTGGTTCTCGAAAGTTTATTCAATTAGTCAGATTACTCCATAAAATTTATGCACATTTTTTGAAGTGACAAGCGCGTCACACATTCGCGGACCAAAATGACTATTTACTCTTTTAATTACCATTGTTCAAGTAATATGTGGATCAAAAGAGGTGAGTAGAATATTCAAGTGAAGTGAAGCAAAACACAAGGTCAAGGAATCAAGGGGCTTGTGCTTTTCAAAGCAATTAATTAATCAAAAAGCTCATTGTTCAAAGTAACTTAACTAGTCTAGTGACTACTCACTATATAACTACTCTGTCAATTATAATTCCCATATAAAATATGAATTTTCCACTTTTCAAAGAATTGTATTGCACCTGAGTAGGATGCTTCTCATAAACAATTACAAATTCCAATCTTAAAGTTTTCAACAATTAATCTTTAAATAATACTCCCCATGTGGCCTAAAGTATAGATTAATCCACTATTTTAATATATAGAACCCTCTTATCACTTGAATTTCTGTACCTTTTGAAACTTATTGACTAGATTAGCAATTTTTTCCTTGTAATCTTATAAGTACATTTTGATTCTATAAACAAATAAACAATATATACAAAGTTTCTATTCCAATCTATTATGCTATATAGATAGTTCCTTACAAGCATTATTTAATTCACATGATTTGGATTTAGCATAGTTCAAGGCCTATTTTATTTCTCATTTTCATTAGGGTCAAACATTTAAGAGACTGGCTATTTTGTCTTTTTCCTGTGAGATTTGCAAATCTCAATGCTCACAGTCCCCATTGTTCCTAAAAATCTTGCTTGACTTTATCAATAGTACCCTATTTTATGTAAATGGTCCATGAGATACCTCTTGTCCTTTCTATTGAAATGACCAATCATCTCTCATCATATAATCACTATCATATTACTATTTACTACTACAAATGTTACAAATTTGTAGTACAAAATAAAACTTGATAAAATGTTAGAGTAAGTTATATATGGAAAATATGATTTCTATTTAATATTAGAAAGTTGAAATTTATTAAGTTCTATTTTAAAATATATGATTTGCATGAAAAAAGTTAAGGTATAAGTGTGACTTAATTCATATATATTTTTTTATAATGATCTATGCAAGTGTTGAGTAGTAATTTTCTATATCAAGGTCAAGTTTTGTTTTGATTTTCCTTTCCATACATATATACATAATGTAATGACAACATAAAAATAATATTGGAAATAATTTCTATTGTTGTATTGTAATGAAATAGGTACTTAATCACATAAGTACACTTATAATACAATATACAGTAAAGAAATGTTTTGCAGCATGATATAAATTGATACTATTGTTATGCATGCAATTGTGAATAGAACTTGAGACATGTGATTTCTAAGTACGACTTAAGGGCATGTGGATTGAATGCAAAGTTGGAAAAGTTGGCATGACAAACATGGTTAATATTGCATTGATGAATTTGCAGGTGACATGGGTGGAACATACAGAATATGAGGAAAATCAAGTCCACCAGCTGTATAGACCTCTGTTGAGCTCAGGTATGGGGTTTGGCGCGTCTCGGTGGGTCGCTACCCTACAACGCCAGTGCGAGTGCCTTGCCATATTAATGTCCTCTGCCGCTCCCTCTCGAGACCACTCTGGTATTACTCTAACTCAACTACTCACATCATCTTTGATACACATAAAATATCTTTTGATAGTAAATATATTTCTTCTTTGCGTAAAAATATTTTATATGATACTCACATATCATAAAATAAATGCACTACAATGATACAATGTTTTGATATCTCTAGCACATTTTACTTTAAATCATTCAATGATGGTATGATTAACAATAATCTGAACCAAATTGTATTTTTTATGAATGTCTCACAGCAATAACAGCAGGAGGAAGGCGAAGCATGCTGAAACTCGCACAACGAATGACTAACAACTTCTGTGCCGGGGTCTGTGCCTCAACGGTCCACAAATGGAACAAACTTAACCCTGGTAATGTAGACGAAGACGTGAGGGTGATGACACGAAAGAGCGTCGATGATCCAGGCGAGCCACCAGGGATCGTGTTGAGCGCAGCCACGTCTGTGTGGCTCCCGGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGCGATGAAAGGCTCCGTAGCGAATGGGATATACTGTCCAATGGTGGTCCTATGCAAGAGATGGCTCATATTGCTAAAGGACAAGATCATGGCAACTGTGTTTCTCTTCTCCGTGCTAGTGTAAGTTTTCTTTAATTCTTTCTCATTTTAAAACCCTAATAATAATAATAATAATAATGATTTTTTAATACTTATTTGAAACATTTCTTCAAATTATATGGTTGGTACTAGTTGTTACTATTACAAGTTGTAATAACAACAATGTTGAGATGTGACAACGTTATAACTATGTGGACTTGCAAGTTGTTGTAATATTGTAACAAAGTTCAACGTTGAAATGTGAATGTGGCTTTGTTTGTTTGTCGGTAGTGTTTGGATTTTGAGAGGTTGAAAAGTTGAGAAGGACAAGAAGGAAATTTCTGAAGGATCTACAAGCACAAACTTTGATGATTCACTTAGATAAGCTTTTATAACAAGTCAAAATACACTTGTCACCTTATGTATTCCTATTTTATATGGTCCCACCCTTTGTTTAATCAAAATTACTAGTACATTTTTTAGTTTTTAGAAAAATGGAAAAATGTTAGTATTATTATTTTAAGAAAAAGTGGTAGTATCTTTGGTTTGACTAGCTTAGCTCATCAAGAAAATGACAATACATAATAATTTATATTTCATGATTTATTCTCAATTATTATACATTTAATTTATGTTTTTTTAATTGTTTATTTTGATTTTGTAGGCAATGAATTCCAACCAGAGTAGCATGTTGATACTACAAGAAACATGCATAGATGAGGCGGGGTCGCTTGTTGTCTATGCACCGGTTGATATTCCAGCTATGCATGTTGTCATGAACGGTGGCGATTCAGCTTATGTGGCATTACTTCCGTCCGGCTTCGCCATCGTTCCTGACGGTCCTGGGTCACGTGGACTAGAGAATGGCGATGCGACCGCAAATGGAGGCGGCGAGGGGCGTGTTAGCGGGTCCCTTTTAACCGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCTACAGCAAAACTCACCGTGGAATCGGTTGAAACAGTGAACAATCTCATTTCATGCACTGTTCAGAAAATCAAAGCAGCACTTCAATGTGAAAGCTGA

Protein sequence

>MS.gene57512.t1

MSFGGFVENNSGGGGGVRNIGEISCNNERMPFGSFSQPRLVTSPALAKSMFNSPGLSLALQTNIDGQEDVNGSMHGNYEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVPSTLPDFSSGMSNNPLAIVSPSNRQTSMVTTGFDRSVERSMFLELALAAMDELVKMAQTNDPLWIRSIEGGREILNHEEYLRTFTPCIGLKPNGFVSEASRETGTVIINSLALVETLMDSNRWIEMFPCIIARTSTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGATSFVNCRKLPSGCVVQDMPNGYSKVTWVEHTEYEENQVHQLYRPLLSSGMGFGASRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGDATANGGGEGRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES