Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60856.t1 | XP_003591776.2 | 97.1 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 8.70E-294 | 1018.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60856.t1 | B9RAJ0 | 55.6 | 489 | 194 | 6 | 55 | 524 | 6 | 490 | 8.1e-155 | 548.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60856.t1 | G7I369 | 97.1 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 6.3e-294 | 1018.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049351 | MS.gene60856 | 0.8108 | 9.63E-51 | -1.69E-46 |
MS.gene049427 | MS.gene60856 | 0.844248 | 8.50E-59 | -1.69E-46 |
MS.gene049491 | MS.gene60856 | 0.804581 | 2.02E-49 | -1.69E-46 |
MS.gene050301 | MS.gene60856 | 0.834925 | 2.26E-56 | -1.69E-46 |
MS.gene050593 | MS.gene60856 | 0.80922 | 2.11E-50 | -1.69E-46 |
MS.gene05101 | MS.gene60856 | 0.833877 | 4.14E-56 | -1.69E-46 |
MS.gene051387 | MS.gene60856 | 0.840017 | 1.12E-57 | -1.69E-46 |
MS.gene052188 | MS.gene60856 | 0.836405 | 9.54E-57 | -1.69E-46 |
MS.gene052310 | MS.gene60856 | 0.849203 | 3.76E-60 | -1.69E-46 |
MS.gene052421 | MS.gene60856 | 0.817848 | 2.67E-52 | -1.69E-46 |
MS.gene053384 | MS.gene60856 | 0.80425 | 2.36E-49 | -1.69E-46 |
MS.gene053758 | MS.gene60856 | 0.802567 | 5.28E-49 | -1.69E-46 |
MS.gene054123 | MS.gene60856 | 0.844831 | 5.92E-59 | -1.69E-46 |
MS.gene054376 | MS.gene60856 | 0.819555 | 1.09E-52 | -1.69E-46 |
MS.gene054804 | MS.gene60856 | 0.800984 | 1.12E-48 | -1.69E-46 |
MS.gene055390 | MS.gene60856 | 0.800624 | 1.32E-48 | -1.69E-46 |
MS.gene055647 | MS.gene60856 | 0.825978 | 3.49E-54 | -1.69E-46 |
MS.gene055930 | MS.gene60856 | 0.806374 | 8.49E-50 | -1.69E-46 |
MS.gene056407 | MS.gene60856 | 0.813001 | 3.19E-51 | -1.69E-46 |
MS.gene056410 | MS.gene60856 | 0.828182 | 1.04E-54 | -1.69E-46 |
MS.gene056511 | MS.gene60856 | 0.803877 | 2.83E-49 | -1.69E-46 |
MS.gene056609 | MS.gene60856 | 0.837463 | 5.12E-57 | -1.69E-46 |
MS.gene057011 | MS.gene60856 | 0.821923 | 3.12E-53 | -1.69E-46 |
MS.gene057123 | MS.gene60856 | 0.80306 | 4.17E-49 | -1.69E-46 |
MS.gene057146 | MS.gene60856 | 0.832625 | 8.50E-56 | -1.69E-46 |
MS.gene057416 | MS.gene60856 | 0.801252 | 9.83E-49 | -1.69E-46 |
MS.gene058019 | MS.gene60856 | 0.813471 | 2.52E-51 | -1.69E-46 |
MS.gene05811 | MS.gene60856 | 0.810537 | 1.10E-50 | -1.69E-46 |
MS.gene058660 | MS.gene60856 | 0.840977 | 6.28E-58 | -1.69E-46 |
MS.gene05883 | MS.gene60856 | 0.801288 | 9.66E-49 | -1.69E-46 |
MS.gene05886 | MS.gene60856 | 0.816357 | 5.76E-52 | -1.69E-46 |
MS.gene058993 | MS.gene60856 | 0.807786 | 4.26E-50 | -1.69E-46 |
MS.gene05907 | MS.gene60856 | 0.844587 | 6.89E-59 | -1.69E-46 |
MS.gene059536 | MS.gene60856 | 0.807952 | 3.93E-50 | -1.69E-46 |
MS.gene059597 | MS.gene60856 | 0.835224 | 1.90E-56 | -1.69E-46 |
MS.gene05959 | MS.gene60856 | 0.846064 | 2.75E-59 | -1.69E-46 |
MS.gene059676 | MS.gene60856 | 0.870965 | 9.79E-67 | -1.69E-46 |
MS.gene059688 | MS.gene60856 | 0.812238 | 4.69E-51 | -1.69E-46 |
MS.gene059960 | MS.gene60856 | 0.821954 | 3.07E-53 | -1.69E-46 |
MS.gene060818 | MS.gene60856 | 0.810085 | 1.37E-50 | -1.69E-46 |
MS.gene061200 | MS.gene60856 | 0.82342 | 1.40E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60856.t1 | MTR_1g092920 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1063 |
MS.gene60856.t1 | MTR_3g088860 | 55.021 | 478 | 196 | 5 | 61 | 524 | 9 | 481 | 0.0 | 560 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60856.t1 | AT5G04710 | 78.216 | 482 | 99 | 3 | 46 | 524 | 47 | 525 | 0.0 | 802 |
MS.gene60856.t1 | AT5G60160 | 58.193 | 476 | 183 | 5 | 61 | 524 | 5 | 476 | 0.0 | 580 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTTATCTGCAAAATT+TGG | 0.136182 | 1.4:+73193279 | None:intergenic |
AGAAGATGAGTCTCAAAATT+TGG | 0.216625 | 1.4:+73196217 | None:intergenic |
TGGTGCACCCACCATGTTTC+AGG | 0.245589 | 1.4:-73194082 | MS.gene60856:CDS |
TTGCCTGAGTTGGAAGGTTT+TGG | 0.257427 | 1.4:+73193145 | None:intergenic |
AAGAGTAGGAATACGCAAAA+TGG | 0.284264 | 1.4:+73197040 | None:intergenic |
GATAGGGATTTGAGTGTTGC+AGG | 0.304340 | 1.4:-73197125 | MS.gene60856:CDS |
CGAATGAAGTGTGATGAATT+TGG | 0.317750 | 1.4:+73198552 | None:intergenic |
CACTCGTAATATGTCTTGTT+TGG | 0.323205 | 1.4:-73198242 | MS.gene60856:CDS |
TCGATTATCTCAACGAATCT+TGG | 0.323561 | 1.4:-73198458 | MS.gene60856:CDS |
TCTAACAGTGTCTGCAGATA+TGG | 0.338378 | 1.4:-73193316 | MS.gene60856:intron |
TATGGCATACTTGGTTTGAT+AGG | 0.339877 | 1.4:-73197142 | MS.gene60856:CDS |
AGACTTATGGAGGTGGGTTA+TGG | 0.344088 | 1.4:-73197160 | MS.gene60856:CDS |
TTGTGAATCTCCGGATGATT+TGG | 0.367388 | 1.4:-73194642 | MS.gene60856:CDS |
AATTTGGTTTGAAACCTTCC+TGG | 0.386938 | 1.4:+73196233 | None:intergenic |
ATGGTAAATGTTCAGACTTA+TGG | 0.394816 | 1.4:-73197173 | MS.gene60856:CDS |
TAGGTCCAATACTCGCTTCT+GGG | 0.407232 | 1.4:-73192575 | MS.gene60856:CDS |
ATAGGTCCAATACTCGCTTC+TGG | 0.410477 | 1.4:-73192576 | MS.gene60856:CDS |
TGTTTGGTTGCTTTCGCCGT+TGG | 0.416471 | 1.4:-73198226 | MS.gene60856:CDS |
GTTAACAATGGAAACGGATT+GGG | 0.417308 | 1.4:+73198488 | None:intergenic |
TTCAAGTTATTGCGCATTGA+GGG | 0.445171 | 1.4:-73194678 | MS.gene60856:CDS |
GAGGTGGGTTATGGCATACT+TGG | 0.446649 | 1.4:-73197151 | MS.gene60856:CDS |
GAAGGCTTCTTCTTATATGA+TGG | 0.447361 | 1.4:-73197192 | MS.gene60856:CDS |
GAGACGTATAGTTGCGAGCT+TGG | 0.450006 | 1.4:-73194055 | MS.gene60856:CDS |
CCAATACTCGCTTCTGGGGT+TGG | 0.454012 | 1.4:-73192570 | MS.gene60856:CDS |
ACAAGTCCTTTCTGCAACTC+TGG | 0.460030 | 1.4:+73193243 | None:intergenic |
TCAGATTCTGCTCAAGGAGC+TGG | 0.464972 | 1.4:-73194102 | MS.gene60856:CDS |
GAATGAAGTGTGATGAATTT+GGG | 0.466763 | 1.4:+73198553 | None:intergenic |
CTACTCACTGTAGGAATTCG+TGG | 0.467627 | 1.4:-73192628 | MS.gene60856:intron |
CGTTAACAATGGAAACGGAT+TGG | 0.469284 | 1.4:+73198487 | None:intergenic |
ATGGCATACTTGGTTTGATA+GGG | 0.475833 | 1.4:-73197141 | MS.gene60856:CDS |
TGAAGGTACGATGTGGGTAA+TGG | 0.478279 | 1.4:-73197281 | MS.gene60856:intron |
ACTATACGCCAATCATTTCT+CGG | 0.479951 | 1.4:-73193997 | MS.gene60856:intron |
CTCTTGCCATTCATCTTGAC+CGG | 0.486089 | 1.4:-73197022 | MS.gene60856:intron |
AGATTGCGGTAGCGAAGAAA+TGG | 0.489273 | 1.4:+73198576 | None:intergenic |
CAGTGGATGATGAGAAGCTT+TGG | 0.489869 | 1.4:+73196126 | None:intergenic |
AGTAACGTCCACCTGGTTTG+AGG | 0.492439 | 1.4:+73198269 | None:intergenic |
CAAAATTTGGATGAACTCCA+TGG | 0.496480 | 1.4:+73193292 | None:intergenic |
TGTTGACTCTTGTGAATCTC+CGG | 0.497372 | 1.4:-73194651 | MS.gene60856:CDS |
CCAACCCCAGAAGCGAGTAT+TGG | 0.498498 | 1.4:+73192570 | None:intergenic |
AGAGTAGGAATACGCAAAAT+GGG | 0.505031 | 1.4:+73197041 | None:intergenic |
CTTCAAGTTATTGCGCATTG+AGG | 0.506033 | 1.4:-73194679 | MS.gene60856:CDS |
ATGGTATACCGAGAAATGAT+TGG | 0.506590 | 1.4:+73193989 | None:intergenic |
GATACTCAACCTAGCTGCCT+TGG | 0.507943 | 1.4:-73194749 | MS.gene60856:CDS |
TTGCTCAACTTTCAATGCAC+AGG | 0.508431 | 1.4:-73192524 | MS.gene60856:intron |
TTCTTAATGAAAATGAAGAA+TGG | 0.509917 | 1.4:-73198294 | MS.gene60856:CDS |
TGGCTAGCGAACAAGCGATT+CGG | 0.514344 | 1.4:-73194622 | MS.gene60856:CDS |
GCAGTATAAGAGAAATATGT+GGG | 0.516675 | 1.4:-73191860 | MS.gene60856:intron |
TAGAGAGGAATTGCCTGAGT+TGG | 0.517382 | 1.4:+73193135 | None:intergenic |
TGGACTCATTTCCACGCCAC+AGG | 0.517508 | 1.4:-73198438 | MS.gene60856:intron |
TGAGTGATGGAGATGAAGAA+TGG | 0.519262 | 1.4:+73198622 | None:intergenic |
TTCTGGGGTTGGCATCCGAA+CGG | 0.519284 | 1.4:-73192559 | MS.gene60856:CDS |
ACTCAACCTAGCTGCCTTGG+AGG | 0.522687 | 1.4:-73194746 | MS.gene60856:CDS |
AGAAGCGAGTATTGGACCTA+TGG | 0.522950 | 1.4:+73192578 | None:intergenic |
AAACGACAATTAATCGCAGC+TGG | 0.525194 | 1.4:-73198325 | MS.gene60856:CDS |
TCATCATCCACTGCTTATGC+AGG | 0.526925 | 1.4:-73196116 | MS.gene60856:intron |
CAATTCCACAGTCAACCGTT+CGG | 0.533344 | 1.4:+73192544 | None:intergenic |
AATCCAAAACCTTCCAACTC+AGG | 0.535938 | 1.4:-73193148 | MS.gene60856:intron |
TTCCACTGGTAGCATAGCGC+TGG | 0.536045 | 1.4:+73193202 | None:intergenic |
ATAGTACCGGTCAAGATGAA+TGG | 0.542404 | 1.4:+73197016 | None:intergenic |
TAGCGAAGAAATGGTGATGA+TGG | 0.542884 | 1.4:+73198585 | None:intergenic |
TTGAGGTTGAGTTTGAGTGA+TGG | 0.543547 | 1.4:+73198609 | None:intergenic |
TTTGCACCTCCAAGGCAGCT+AGG | 0.544081 | 1.4:+73194740 | None:intergenic |
AAGATCGTTAACAATGGAAA+CGG | 0.548215 | 1.4:+73198482 | None:intergenic |
GTCCTTTCTGCAACTCTGGT+CGG | 0.548950 | 1.4:+73193247 | None:intergenic |
TGCAGTATAAGAGAAATATG+TGG | 0.550194 | 1.4:-73191861 | MS.gene60856:intron |
GTGGGTTCAGATTCTGCTCA+AGG | 0.551999 | 1.4:-73194108 | MS.gene60856:CDS |
GTTAGAAATGACATGGGATG+CGG | 0.553592 | 1.4:-73192606 | MS.gene60856:CDS |
GCAAATAACTATGTTGGTGA+AGG | 0.554402 | 1.4:-73194033 | MS.gene60856:CDS |
AATGTTCAGACTTATGGAGG+TGG | 0.554687 | 1.4:-73197167 | MS.gene60856:CDS |
ATTGTTTAGCACAGTGAACC+AGG | 0.556386 | 1.4:-73196251 | MS.gene60856:intron |
TCGAGTTTCATCGAGAGTAA+AGG | 0.562438 | 1.4:+73196193 | None:intergenic |
TATAAGAGAAATATGTGGGA+AGG | 0.567515 | 1.4:-73191856 | MS.gene60856:CDS |
GCTCGCAACTATACGTCTCA+TGG | 0.570595 | 1.4:+73194059 | None:intergenic |
GAGGAATTGCCTGAGTTGGA+AGG | 0.571426 | 1.4:+73193139 | None:intergenic |
GCCGAAAACAGCGTCAGTGA+AGG | 0.571596 | 1.4:-73197210 | MS.gene60856:CDS |
TGTTCGCTAGCCAAATCATC+CGG | 0.572626 | 1.4:+73194632 | None:intergenic |
AAGAAGAGATGTGATTCCAC+TGG | 0.575695 | 1.4:+73193188 | None:intergenic |
ATGGGATGCGGATCAACCAT+AGG | 0.581725 | 1.4:-73192594 | MS.gene60856:CDS |
ATTCATTGTTTGCACCTCCA+AGG | 0.583178 | 1.4:+73194732 | None:intergenic |
GGTTGCTCTGTTTGACAATG+AGG | 0.587175 | 1.4:-73194597 | MS.gene60856:CDS |
CACCGACCAGAGTTGCAGAA+AGG | 0.588992 | 1.4:-73193249 | MS.gene60856:CDS |
ACGTCTCATGGCCTGAAACA+TGG | 0.589765 | 1.4:+73194071 | None:intergenic |
TTCGGCTTCAGTTTCAGACA+TGG | 0.589778 | 1.4:+73197227 | None:intergenic |
TGTTGTTGAAGGTACGATGT+GGG | 0.589808 | 1.4:-73197287 | MS.gene60856:intron |
GAAATGGTGATGATGGTTTG+AGG | 0.591381 | 1.4:+73198592 | None:intergenic |
GTGAAGAAGTAACGTCCACC+TGG | 0.592016 | 1.4:+73198262 | None:intergenic |
ATGTTCAGACTTATGGAGGT+GGG | 0.592042 | 1.4:-73197166 | MS.gene60856:CDS |
ATTCGTGGTTAGAAATGACA+TGG | 0.593807 | 1.4:-73192613 | MS.gene60856:CDS |
GTGTCTGCAGATATGGCCCA+TGG | 0.599082 | 1.4:-73193309 | MS.gene60856:CDS |
TCAAGATGAATGGCAAGAGT+AGG | 0.611001 | 1.4:+73197026 | None:intergenic |
TTTAGCACAGTGAACCAGGA+AGG | 0.619667 | 1.4:-73196247 | MS.gene60856:intron |
ATCGAGAAGATCGTTAACAA+TGG | 0.623163 | 1.4:+73198476 | None:intergenic |
AAAATTTGGATGAACTCCAT+GGG | 0.626689 | 1.4:+73193293 | None:intergenic |
AGCTTGGCAAATAACTATGT+TGG | 0.628527 | 1.4:-73194039 | MS.gene60856:CDS |
CTTTCTGCAACTCTGGTCGG+TGG | 0.630101 | 1.4:+73193250 | None:intergenic |
TTGTTGTTGAAGGTACGATG+TGG | 0.636225 | 1.4:-73197288 | MS.gene60856:intron |
GTGATGAATTTGGGAGATTG+CGG | 0.637552 | 1.4:+73198562 | None:intergenic |
AGGTCCAATACTCGCTTCTG+GGG | 0.638373 | 1.4:-73192574 | MS.gene60856:CDS |
AACCAGCGCTATGCTACCAG+TGG | 0.640942 | 1.4:-73193204 | MS.gene60856:CDS |
GTAAATGTTCAGACTTATGG+AGG | 0.649065 | 1.4:-73197170 | MS.gene60856:CDS |
CATAGACAAGATGCTGACTG+TGG | 0.652971 | 1.4:-73191778 | MS.gene60856:CDS |
TAGCGAACAAGCGATTCGGA+TGG | 0.653246 | 1.4:-73194618 | MS.gene60856:CDS |
GGCATCCGAACGGTTGACTG+TGG | 0.654138 | 1.4:-73192549 | MS.gene60856:CDS |
TGCTCTGTTTGACAATGAGG+AGG | 0.654956 | 1.4:-73194594 | MS.gene60856:intron |
GAAGAATGGAACCTCAAACC+AGG | 0.655104 | 1.4:-73198280 | MS.gene60856:CDS |
CTCATGGCCTGAAACATGGT+GGG | 0.659072 | 1.4:+73194075 | None:intergenic |
ATACGTACCTGCATAAGCAG+TGG | 0.663270 | 1.4:+73196109 | None:intergenic |
GAAGAATGGAGAAGAATGTG+CGG | 0.674419 | 1.4:+73198636 | None:intergenic |
GAATGAAGGTACCTGTGGCG+TGG | 0.675955 | 1.4:+73198427 | None:intergenic |
TTTACTCTCGATGAAACTCG+AGG | 0.679371 | 1.4:-73196191 | MS.gene60856:CDS |
TTCGTGGTTAGAAATGACAT+GGG | 0.700502 | 1.4:-73192612 | MS.gene60856:CDS |
GAATGGAACCTCAAACCAGG+TGG | 0.708230 | 1.4:-73198277 | MS.gene60856:CDS |
TCTCATGGCCTGAAACATGG+TGG | 0.711165 | 1.4:+73194074 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 73191770 | 73198679 | 73191770 | ID=MS.gene60856 |
chr1.4 | mRNA | 73191770 | 73198679 | 73191770 | ID=MS.gene60856.t1;Parent=MS.gene60856 |
chr1.4 | exon | 73198439 | 73198679 | 73198439 | ID=MS.gene60856.t1.exon1;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73198439 | 73198679 | 73198439 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73198220 | 73198355 | 73198220 | ID=MS.gene60856.t1.exon2;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73198220 | 73198355 | 73198220 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73197023 | 73197298 | 73197023 | ID=MS.gene60856.t1.exon3;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73197023 | 73197298 | 73197023 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73196117 | 73196264 | 73196117 | ID=MS.gene60856.t1.exon4;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73196117 | 73196264 | 73196117 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73194595 | 73194834 | 73194595 | ID=MS.gene60856.t1.exon5;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73194595 | 73194834 | 73194595 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73193998 | 73194130 | 73193998 | ID=MS.gene60856.t1.exon6;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73193998 | 73194130 | 73193998 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73193149 | 73193330 | 73193149 | ID=MS.gene60856.t1.exon7;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73193149 | 73193330 | 73193149 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73192525 | 73192637 | 73192525 | ID=MS.gene60856.t1.exon8;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73192525 | 73192637 | 73192525 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
chr1.4 | exon | 73191770 | 73191878 | 73191770 | ID=MS.gene60856.t1.exon9;Parent=MS.gene60856.t1 |
chr1.4 | CDS | 73191770 | 73191878 | 73191770 | ID=cds.MS.gene60856.t1;Parent=MS.gene60856.t1 |
Gene Sequence |
Protein sequence |