Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60915.t1 | XP_003595873.2 | 98.6 | 700 | 10 | 0 | 1 | 700 | 45 | 744 | 0.00E+00 | 1340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60915.t1 | Q6NLC1 | 68.7 | 648 | 187 | 6 | 53 | 698 | 60 | 693 | 1.5e-244 | 847.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60915.t1 | G7IT31 | 98.6 | 700 | 10 | 0 | 1 | 700 | 45 | 744 | 0.0e+00 | 1340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene60915 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene60915 | 0.833178 | 6.19E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene60915 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene60915 | 0.851746 | 7.26E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene60915 | 0.841878 | 3.64E-58 | -1.69E-46 |
| MS.gene051588 | MS.gene60915 | 0.877413 | 6.41E-69 | -1.69E-46 |
| MS.gene051860 | MS.gene60915 | 0.80205 | 6.74E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene60915 | -0.846373 | 2.26E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene60915 | 0.826054 | 3.35E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene60915 | 0.820232 | 7.65E-53 | -1.69E-46 |
| MS.gene053169 | MS.gene60915 | 0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene60915 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene60915 | 0.846976 | 1.55E-59 | -1.69E-46 |
| MS.gene054556 | MS.gene60915 | 0.836119 | 1.13E-56 | -1.69E-46 |
| MS.gene054719 | MS.gene60915 | 0.836525 | 8.89E-57 | -1.69E-46 |
| MS.gene054917 | MS.gene60915 | 0.855009 | 8.41E-62 | -1.69E-46 |
| MS.gene054918 | MS.gene60915 | 0.849061 | 4.12E-60 | -1.69E-46 |
| MS.gene054920 | MS.gene60915 | 0.8674 | 1.41E-65 | -1.69E-46 |
| MS.gene055116 | MS.gene60915 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene60915 | 0.826566 | 2.53E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene60915 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene60915 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene60915 | 0.824797 | 6.65E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene60915 | 0.815442 | 9.22E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene60915 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene60915 | 0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene60915 | 0.828238 | 1.00E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene60915 | 0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene60915 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene60915 | 0.824747 | 6.83E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene60915 | 0.848442 | 6.11E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene60915 | 0.817686 | 2.90E-52 | -1.69E-46 |
| MS.gene058700 | MS.gene60915 | 0.832379 | 9.78E-56 | -1.69E-46 |
| MS.gene05886 | MS.gene60915 | 0.849452 | 3.20E-60 | -1.69E-46 |
| MS.gene059141 | MS.gene60915 | 0.823785 | 1.15E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene60915 | 0.855686 | 5.34E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene60915 | 0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene60915 | -0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene60915 | 0.807297 | 5.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60915 | MS.gene24979 | PPI |
| MS.gene068301 | MS.gene60915 | PPI |
| MS.gene60915 | MS.gene33686 | PPI |
| MS.gene33433 | MS.gene60915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60915.t1 | MTR_2g062790 | 98.571 | 700 | 10 | 0 | 1 | 700 | 45 | 744 | 0.0 | 1402 |
| MS.gene60915.t1 | MTR_1g057830 | 88.611 | 360 | 34 | 1 | 341 | 700 | 12 | 364 | 0.0 | 593 |
| MS.gene60915.t1 | MTR_3g087350 | 29.809 | 577 | 315 | 17 | 140 | 700 | 166 | 668 | 8.52e-57 | 210 |
| MS.gene60915.t1 | MTR_3g087350 | 28.103 | 580 | 299 | 18 | 145 | 681 | 825 | 1329 | 3.62e-46 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60915.t1 | AT1G54350 | 65.665 | 699 | 204 | 8 | 4 | 698 | 27 | 693 | 0.0 | 887 |
| MS.gene60915.t1 | AT4G39850 | 29.720 | 572 | 317 | 16 | 140 | 698 | 168 | 667 | 5.09e-57 | 211 |
| MS.gene60915.t1 | AT4G39850 | 28.549 | 634 | 357 | 18 | 80 | 683 | 762 | 1329 | 2.38e-49 | 187 |
| MS.gene60915.t1 | AT4G39850 | 29.720 | 572 | 317 | 16 | 140 | 698 | 168 | 667 | 5.18e-57 | 211 |
| MS.gene60915.t1 | AT4G39850 | 28.436 | 633 | 358 | 17 | 80 | 683 | 762 | 1328 | 5.78e-50 | 189 |
| MS.gene60915.t1 | AT4G39850 | 29.720 | 572 | 317 | 16 | 140 | 698 | 168 | 667 | 5.18e-57 | 211 |
| MS.gene60915.t1 | AT4G39850 | 28.436 | 633 | 358 | 17 | 80 | 683 | 762 | 1328 | 5.78e-50 | 189 |
| MS.gene60915.t1 | AT4G39850 | 29.720 | 572 | 317 | 16 | 140 | 698 | 168 | 667 | 6.96e-57 | 210 |
| MS.gene60915.t1 | AT4G39850 | 28.189 | 635 | 372 | 19 | 80 | 683 | 762 | 1343 | 8.01e-47 | 180 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCAATGGAAGGCCTTTC+AGG | 0.154189 | 2.4:+31107970 | MS.gene60915:CDS |
| TACATAGTATATGATCTTTC+CGG | 0.212636 | 2.4:-31115791 | None:intergenic |
| GAACAAAAGAAAACCTTATC+TGG | 0.214012 | 2.4:-31108050 | None:intergenic |
| TACTACTTGGGTGGCTTTGC+TGG | 0.236788 | 2.4:+31110030 | MS.gene60915:CDS |
| TCAAAAGCCGTACATGGTTT+TGG | 0.237570 | 2.4:+31115927 | MS.gene60915:CDS |
| AAATTTCTTGCAAGAGAAAA+AGG | 0.250601 | 2.4:+31111240 | MS.gene60915:CDS |
| GGAAAGTGGCAGCACCTTAT+TGG | 0.261757 | 2.4:+31108658 | MS.gene60915:CDS |
| TAAATCTCTCTCGGATTCTT+TGG | 0.269966 | 2.4:+31115430 | MS.gene60915:CDS |
| GTTCTTCTCATATACTCTAT+TGG | 0.270925 | 2.4:+31111061 | MS.gene60915:CDS |
| AACAGCCCTTTCTTTCTCTT+TGG | 0.272720 | 2.4:+31110964 | MS.gene60915:CDS |
| GCTGATTTCTTCTAGAAATC+TGG | 0.291668 | 2.4:+31113353 | MS.gene60915:CDS |
| CAAACAATGAACAGCCAAAT+TGG | 0.291996 | 2.4:+31118101 | MS.gene60915:CDS |
| TTATGGACTTGTACGGGTTC+GGG | 0.324633 | 2.4:+31111276 | MS.gene60915:CDS |
| GTTATGGACTTGTACGGGTT+CGG | 0.326593 | 2.4:+31111275 | MS.gene60915:CDS |
| AACATCTTTATTAAGAGTTA+TGG | 0.330581 | 2.4:+31115747 | MS.gene60915:CDS |
| GCTGAGTCAATTGCTTTCTA+TGG | 0.332810 | 2.4:+31111304 | MS.gene60915:CDS |
| TAAGAGTTATGGCTGGTCTA+TGG | 0.333129 | 2.4:+31115758 | MS.gene60915:CDS |
| AGGTGAGTTTGATGATATTT+TGG | 0.336741 | 2.4:+31115394 | MS.gene60915:intron |
| GTGGGTTCGATGTGCCAATT+TGG | 0.336932 | 2.4:-31118115 | None:intergenic |
| AAGATCATATACTATGTAAA+AGG | 0.341820 | 2.4:+31115796 | MS.gene60915:CDS |
| ATGGTCTAGTGTTCTCTCTC+TGG | 0.347611 | 2.4:+31117545 | MS.gene60915:CDS |
| AACAAATGTGTCTCTGAATC+AGG | 0.349409 | 2.4:+31108005 | MS.gene60915:CDS |
| TTTCATTGAGATGGAGGTCT+TGG | 0.352402 | 2.4:+31110822 | MS.gene60915:CDS |
| GCTACATATTACCTCGGTTC+GGG | 0.358370 | 2.4:+31117505 | MS.gene60915:CDS |
| CAAGCAAGATTGCAGCTTGC+TGG | 0.371047 | 2.4:+31108699 | MS.gene60915:CDS |
| AACAATTACTTTATCCAACT+TGG | 0.371885 | 2.4:+31115962 | MS.gene60915:CDS |
| AGTATTCACATCTGAACTAA+TGG | 0.378490 | 2.4:-31115839 | None:intergenic |
| GCTCTCACTTTGGCTACTAC+TGG | 0.383712 | 2.4:+31108729 | MS.gene60915:CDS |
| AGAGAAACATGAAACCTTAC+TGG | 0.387955 | 2.4:+31115523 | MS.gene60915:CDS |
| GGCTACATATTACCTCGGTT+CGG | 0.388740 | 2.4:+31117504 | MS.gene60915:CDS |
| AAGGAAGCAGACTTTCGTTA+TGG | 0.392421 | 2.4:+31111259 | MS.gene60915:CDS |
| TCATCAACAATTCGCTGGTC+TGG | 0.393279 | 2.4:-31110923 | None:intergenic |
| AGAGAAAGAAAGGGCTGTTC+CGG | 0.394846 | 2.4:-31110960 | None:intergenic |
| TCTGCTGTCATTAATCGGTT+AGG | 0.396603 | 2.4:+31113555 | MS.gene60915:CDS |
| GTTGCTCCCATGTATTTCTC+TGG | 0.404905 | 2.4:+31113429 | MS.gene60915:CDS |
| TTATTGGAGTTCTGATGATA+AGG | 0.408989 | 2.4:+31108674 | MS.gene60915:CDS |
| TAACCAATTTAACAGATAAC+AGG | 0.410263 | 2.4:+31115706 | MS.gene60915:intron |
| TGAGCTGATAAAGATCTTAG+AGG | 0.415212 | 2.4:+31117470 | MS.gene60915:CDS |
| TGATGGTGTGGTGGAAGTGC+AGG | 0.416519 | 2.4:+31108596 | MS.gene60915:CDS |
| ACTGAATGAGATCAAGTCTA+TGG | 0.420267 | 2.4:-31111002 | None:intergenic |
| TCATTCAGTAACATCTTGTA+TGG | 0.427733 | 2.4:+31111016 | MS.gene60915:CDS |
| AAAACCTCAACTAGCTCTAC+TGG | 0.431606 | 2.4:+31117608 | MS.gene60915:CDS |
| CTTTACAAGTTCATCTGCAT+TGG | 0.434448 | 2.4:+31115478 | MS.gene60915:CDS |
| AAGCACTTATAGCTTGAAAC+TGG | 0.436695 | 2.4:-31113530 | None:intergenic |
| GGAGTTCAAGAATACCTCAT+TGG | 0.440355 | 2.4:-31117658 | None:intergenic |
| CTCTTGTGGAGTCAATCCAT+TGG | 0.440924 | 2.4:-31115504 | None:intergenic |
| CACTTCCACCACACCATCAC+TGG | 0.443255 | 2.4:-31108592 | None:intergenic |
| AAAGCAGCTACTTTACTACT+TGG | 0.443578 | 2.4:+31110017 | MS.gene60915:CDS |
| GAGAAACTCTTTCATTGAGA+TGG | 0.445852 | 2.4:+31110813 | MS.gene60915:CDS |
| ACAATTACTTTATCCAACTT+GGG | 0.452027 | 2.4:+31115963 | MS.gene60915:CDS |
| TGTTTATCACTATCTGATGT+TGG | 0.452089 | 2.4:-31116000 | None:intergenic |
| ATGGCTGGTCTATGGAGAAC+TGG | 0.454629 | 2.4:+31115766 | MS.gene60915:CDS |
| TTATCATCAGAACTCCAATA+AGG | 0.455180 | 2.4:-31108672 | None:intergenic |
| TAGGATTCTGTCGTGGAAGT+TGG | 0.460665 | 2.4:-31118059 | None:intergenic |
| AAATCCATCAGCAGAAAATC+CGG | 0.460996 | 2.4:+31115889 | MS.gene60915:CDS |
| AGACTTATCATTGACAATCA+AGG | 0.461558 | 2.4:+31115595 | MS.gene60915:CDS |
| TTCAAGTTCTTCCTCCTGAA+AGG | 0.462884 | 2.4:-31107984 | None:intergenic |
| AGAGTGCCAAAGAGAAAGAA+AGG | 0.464970 | 2.4:-31110970 | None:intergenic |
| CCTACCTCAAAAGCCGTACA+TGG | 0.467676 | 2.4:+31115921 | MS.gene60915:CDS |
| ACTTTCGTTATGGACTTGTA+CGG | 0.468756 | 2.4:+31111269 | MS.gene60915:CDS |
| GCTACTACTGGAATTAGTGT+TGG | 0.474431 | 2.4:+31108741 | MS.gene60915:CDS |
| TGGCTGTTCATTGTTTGAAT+CGG | 0.483100 | 2.4:-31118095 | None:intergenic |
| TGGTCTAGTGTTCTCTCTCT+GGG | 0.488358 | 2.4:+31117546 | MS.gene60915:CDS |
| TCATATACTATGTAAAAGGC+GGG | 0.491506 | 2.4:+31115800 | MS.gene60915:CDS |
| TTACATGGATCGCTACTTGA+AGG | 0.491857 | 2.4:+31110856 | MS.gene60915:CDS |
| GGTCTATGGAGAACTGGAAC+CGG | 0.496438 | 2.4:+31115772 | MS.gene60915:CDS |
| AAGGTTTCATGTTTCTCTTG+TGG | 0.496726 | 2.4:-31115518 | None:intergenic |
| TACGAAAAGATTGCAGCAGC+GGG | 0.497494 | 2.4:+31117998 | MS.gene60915:CDS |
| TCTGTCGTGGAAGTTGGATA+AGG | 0.498346 | 2.4:-31118053 | None:intergenic |
| CCCATTATGCCCCTTTCCAA+TGG | 0.499905 | 2.4:+31107957 | None:intergenic |
| GAAAGGCCTTCCATTGGAAA+GGG | 0.502321 | 2.4:-31107967 | None:intergenic |
| CCTCCTGAAAGGCCTTCCAT+TGG | 0.503907 | 2.4:-31107973 | None:intergenic |
| TGGCTTTGCTGGAGGAATCC+CGG | 0.504424 | 2.4:+31110041 | MS.gene60915:CDS |
| CAAACTATCTATCTCCAGTA+AGG | 0.504471 | 2.4:-31115537 | None:intergenic |
| ATTGCCAACTGACCCAGATA+AGG | 0.510978 | 2.4:+31108037 | MS.gene60915:CDS |
| ATCTTAGAGGATGTCCGTCT+TGG | 0.514615 | 2.4:+31117483 | MS.gene60915:CDS |
| CATATTACCTCGGTTCGGGT+TGG | 0.517683 | 2.4:+31117509 | MS.gene60915:CDS |
| TTGGATGACGAGGCATTACA+TGG | 0.518451 | 2.4:+31110841 | MS.gene60915:CDS |
| TGTGCAGAAAGATGAGATAG+TGG | 0.518505 | 2.4:+31108563 | MS.gene60915:intron |
| CTTTCGTTATGGACTTGTAC+GGG | 0.519129 | 2.4:+31111270 | MS.gene60915:CDS |
| GGTTGGATTCAACACATGAA+TGG | 0.519369 | 2.4:+31117526 | MS.gene60915:CDS |
| GCTTCCTTTCTTGTCAAACT+CGG | 0.520734 | 2.4:+31117410 | MS.gene60915:CDS |
| CTTCTCATATACTCTATTGG+TGG | 0.523116 | 2.4:+31111064 | MS.gene60915:CDS |
| GGCATAACATACATTAGTGT+TGG | 0.526211 | 2.4:+31118019 | MS.gene60915:CDS |
| TAAAGAGGATTCGCGTCTAG+TGG | 0.528037 | 2.4:-31118134 | None:intergenic |
| TCTCTCTCGGATTCTTTGGA+AGG | 0.528441 | 2.4:+31115434 | MS.gene60915:CDS |
| GATGATCTAAGTTCTTTCAC+CGG | 0.529116 | 2.4:+31110941 | MS.gene60915:CDS |
| AACAAAAGAAAACCTTATCT+GGG | 0.530791 | 2.4:-31108049 | None:intergenic |
| TACTTGGGTGGCTTTGCTGG+AGG | 0.532060 | 2.4:+31110033 | MS.gene60915:CDS |
| TGAAAGGCCTTCCATTGGAA+AGG | 0.534046 | 2.4:-31107968 | None:intergenic |
| GAGTCAATTGCTTTCTATGG+TGG | 0.534909 | 2.4:+31111307 | MS.gene60915:CDS |
| TCATCTGCATTGGAATCCAA+TGG | 0.538018 | 2.4:+31115488 | MS.gene60915:CDS |
| TTATGCCCCTTTCCAATGGA+AGG | 0.541333 | 2.4:+31107961 | None:intergenic |
| AAAACCTTATCTGGGTCAGT+TGG | 0.543409 | 2.4:-31108041 | None:intergenic |
| TCATCCGAGTTTGACAAGAA+AGG | 0.544571 | 2.4:-31117414 | None:intergenic |
| ATAACAGGACCAAGTGGAAG+TGG | 0.548195 | 2.4:+31115721 | MS.gene60915:CDS |
| ATGGGAGCAACAACAGCAGC+AGG | 0.550352 | 2.4:-31113417 | None:intergenic |
| AAGCAACTCTAAATCTCTCT+CGG | 0.551088 | 2.4:+31115421 | MS.gene60915:CDS |
| GAGTGCCAAAGAGAAAGAAA+GGG | 0.554199 | 2.4:-31110969 | None:intergenic |
| TTATCTGGGTCAGTTGGCAA+TGG | 0.554657 | 2.4:-31108035 | None:intergenic |
| TCTTTATTAAGAGTTATGGC+TGG | 0.559998 | 2.4:+31115751 | MS.gene60915:CDS |
| TTAGATCATCAACAATTCGC+TGG | 0.561218 | 2.4:-31110928 | None:intergenic |
| CAATTACTTTATCCAACTTG+GGG | 0.565844 | 2.4:+31115964 | MS.gene60915:CDS |
| AAACTCTTTCATTGAGATGG+AGG | 0.566123 | 2.4:+31110816 | MS.gene60915:CDS |
| AAGCAGCTACTTTACTACTT+GGG | 0.566859 | 2.4:+31110018 | MS.gene60915:CDS |
| ATCATATACTATGTAAAAGG+CGG | 0.569322 | 2.4:+31115799 | MS.gene60915:CDS |
| AATGACATAGCGGTAACCAT+TGG | 0.575192 | 2.4:-31113385 | None:intergenic |
| AAAGAGGATTCGCGTCTAGT+GGG | 0.575584 | 2.4:-31118133 | None:intergenic |
| GTGATATATCTGAAGATCGT+GGG | 0.577030 | 2.4:+31115866 | MS.gene60915:CDS |
| ATGAGAAGAACAACAAAGAG+TGG | 0.577778 | 2.4:-31111049 | None:intergenic |
| AGAGTACCCAAAACCATGTA+CGG | 0.579041 | 2.4:-31115934 | None:intergenic |
| CAGCTACTTTACTACTTGGG+TGG | 0.581250 | 2.4:+31110021 | MS.gene60915:CDS |
| ACGACATCATCACCCCAAGT+TGG | 0.582232 | 2.4:-31115976 | None:intergenic |
| AATCTGGAGTTCTTCACCAA+TGG | 0.584185 | 2.4:+31113369 | MS.gene60915:CDS |
| AATCGGTTGAAGATATGCGT+AGG | 0.585760 | 2.4:-31118078 | None:intergenic |
| AGATGCAACTTCTTCTGCAG+CGG | 0.593320 | 2.4:+31111341 | MS.gene60915:CDS |
| GTCTTGGCTACATATTACCT+CGG | 0.603287 | 2.4:+31117499 | MS.gene60915:CDS |
| AATAGACTATTACCTTTCCG+AGG | 0.613877 | 2.4:-31111105 | None:intergenic |
| CGTGATATATCTGAAGATCG+TGG | 0.617035 | 2.4:+31115865 | MS.gene60915:CDS |
| GTACGAAAAGATTGCAGCAG+CGG | 0.617171 | 2.4:+31117997 | MS.gene60915:CDS |
| TCATCCAGTAGAGCTAGTTG+AGG | 0.619074 | 2.4:-31117612 | None:intergenic |
| CCAATGGAAGGCCTTTCAGG+AGG | 0.619194 | 2.4:+31107973 | MS.gene60915:CDS |
| GTGCAGAAAGATGAGATAGT+GGG | 0.621373 | 2.4:+31108564 | MS.gene60915:intron |
| TGCACTTGATGAAGCCAATG+AGG | 0.624985 | 2.4:+31117644 | MS.gene60915:CDS |
| CATATACTATGTAAAAGGCG+GGG | 0.635401 | 2.4:+31115801 | MS.gene60915:CDS |
| AGAAACCAGTGATGGTGTGG+TGG | 0.640911 | 2.4:+31108587 | MS.gene60915:CDS |
| AGAAGAACAACAAAGAGTGG+AGG | 0.645391 | 2.4:-31111046 | None:intergenic |
| GTAATAAGTGTAGAATCACT+TGG | 0.648547 | 2.4:-31115572 | None:intergenic |
| CATACATTAGTGTTGGCCAT+CGG | 0.648954 | 2.4:+31118026 | MS.gene60915:CDS |
| GATGGAGGTCTTGGATGACG+AGG | 0.656033 | 2.4:+31110831 | MS.gene60915:CDS |
| AAAGGCCTTCCATTGGAAAG+GGG | 0.656936 | 2.4:-31107966 | None:intergenic |
| GATGGTGTGGTGGAAGTGCA+GGG | 0.657302 | 2.4:+31108597 | MS.gene60915:CDS |
| TAACAGATAACAGGACCAAG+TGG | 0.669592 | 2.4:+31115715 | MS.gene60915:intron |
| GAGGTAATATGTAGCCAAGA+CGG | 0.673624 | 2.4:-31117497 | None:intergenic |
| CGATCTTCAGATATATCACG+AGG | 0.678508 | 2.4:-31115862 | None:intergenic |
| GTTGAATCCAACCCGAACCG+AGG | 0.684589 | 2.4:-31117516 | None:intergenic |
| GGGAGAAACCAGTGATGGTG+TGG | 0.687224 | 2.4:+31108584 | MS.gene60915:CDS |
| AGTTGGATAAGGTTGACCGA+TGG | 0.689538 | 2.4:-31118042 | None:intergenic |
| CAATGAGAGAAAAGTCACCA+AGG | 0.699409 | 2.4:-31113503 | None:intergenic |
| ATATGCGTAGGATTCTGTCG+TGG | 0.730796 | 2.4:-31118066 | None:intergenic |
| GAAGAACTTGAATGACATAG+CGG | 0.742392 | 2.4:-31113395 | None:intergenic |
| ATAGTGGGAGAAACCAGTGA+TGG | 0.746381 | 2.4:+31108579 | MS.gene60915:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 31107963 | 31118165 | 31107963 | ID=MS.gene60915 |
| chr2.4 | mRNA | 31107963 | 31118165 | 31107963 | ID=MS.gene60915.t1;Parent=MS.gene60915 |
| chr2.4 | exon | 31107963 | 31108058 | 31107963 | ID=MS.gene60915.t1.exon1;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31107963 | 31108058 | 31107963 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31108570 | 31108804 | 31108570 | ID=MS.gene60915.t1.exon2;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31108570 | 31108804 | 31108570 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31109995 | 31110062 | 31109995 | ID=MS.gene60915.t1.exon3;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31109995 | 31110062 | 31109995 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31110788 | 31111114 | 31110788 | ID=MS.gene60915.t1.exon4;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31110788 | 31111114 | 31110788 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31111226 | 31111390 | 31111226 | ID=MS.gene60915.t1.exon5;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31111226 | 31111390 | 31111226 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31113348 | 31113576 | 31113348 | ID=MS.gene60915.t1.exon6;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31113348 | 31113576 | 31113348 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31115396 | 31115634 | 31115396 | ID=MS.gene60915.t1.exon7;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31115396 | 31115634 | 31115396 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31115721 | 31116027 | 31115721 | ID=MS.gene60915.t1.exon8;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31115721 | 31116027 | 31115721 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31117406 | 31117665 | 31117406 | ID=MS.gene60915.t1.exon9;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31117406 | 31117665 | 31117406 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| chr2.4 | exon | 31117989 | 31118165 | 31117989 | ID=MS.gene60915.t1.exon10;Parent=MS.gene60915.t1 |
| chr2.4 | CDS | 31117989 | 31118165 | 31117989 | ID=cds.MS.gene60915.t1;Parent=MS.gene60915.t1 |
| Gene Sequence |
| Protein sequence |
