AlfalfaGEDB | MS.gene61373

M. sativa cultivar XinJiangDaYe / MS.gene61373

KEGG: K13606
GO: -
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61373.t1	XP_003620673.1	98.4	514	8	0	1	514	1	514	1.40E-288	1001.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61373.t1	Q93ZA0	75.4	451	106	2	69	514	46	496	3.1e-191	669.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61373.t1	G7KPV9	98.4	514	8	0	1	514	1	514	1.0e-288	1001.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049257	MS.gene61373	0.825172	5.42E-54	-1.69E-46
MS.gene049757	MS.gene61373	0.803538	3.32E-49	-1.69E-46
MS.gene050060	MS.gene61373	0.837959	3.82E-57	-1.69E-46
MS.gene050133	MS.gene61373	-0.826168	3.15E-54	-1.69E-46
MS.gene050426	MS.gene61373	-0.810209	1.29E-50	-1.69E-46
MS.gene050553	MS.gene61373	0.838774	2.35E-57	-1.69E-46
MS.gene05081	MS.gene61373	0.837845	4.09E-57	-1.69E-46
MS.gene051525	MS.gene61373	0.806311	8.75E-50	-1.69E-46
MS.gene051552	MS.gene61373	-0.820478	6.72E-53	-1.69E-46
MS.gene051838	MS.gene61373	0.832962	7.01E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61373.t1	MTR_6g088500	98.444	514	8	0	1	514	1	514	0.0	1038
MS.gene61373.t1	MTR_6g088500	97.938	388	8	0	1	388	1	388	0.0	778
MS.gene61373.t1	MTR_8g044240	45.161	248	116	4	180	422	71	303	8.11e-62	206
MS.gene61373.t1	MTR_4g058810	25.463	216	146	4	172	386	5	206	2.00e-14	73.9
MS.gene61373.t1	MTR_4g058840	25.000	216	147	4	172	386	5	206	5.14e-14	72.8
MS.gene61373.t1	MTR_4g058820	25.000	216	147	4	172	386	5	206	5.14e-14	72.8
MS.gene61373.t1	MTR_7g105590	27.723	202	120	5	184	382	14	192	1.02e-13	70.5
MS.gene61373.t1	MTR_3g086210	26.923	234	141	10	164	386	31	245	1.61e-13	72.0
MS.gene61373.t1	MTR_1g051165	22.581	217	156	3	172	386	8	214	1.04e-11	65.9
MS.gene61373.t1	MTR_3g068085	24.303	251	161	8	184	433	21	243	1.13e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61373.t1	AT4G13250	75.388	451	106	2	69	514	46	496	0.0	695
MS.gene61373.t1	AT4G13250	74.945	451	106	3	69	514	46	494	0.0	686
MS.gene61373.t1	AT5G04900	42.308	286	137	6	180	453	79	348	3.73e-64	213
MS.gene61373.t1	AT1G24360	27.273	209	123	6	183	386	79	263	5.94e-14	73.2
MS.gene61373.t1	AT1G10310	30.144	209	125	4	181	389	18	205	1.39e-13	70.9
MS.gene61373.t1	AT5G65205	29.665	209	121	6	183	390	11	194	3.45e-13	70.5
MS.gene61373.t1	AT3G46170	22.672	247	171	4	172	415	20	249	4.98e-13	70.1
MS.gene61373.t1	AT3G55310	23.171	246	171	4	172	415	11	240	7.83e-13	69.3
MS.gene61373.t1	AT3G55290	22.672	247	173	4	171	415	11	241	1.93e-12	68.2
MS.gene61373.t1	AT3G55290	22.672	247	173	4	171	415	10	240	2.00e-12	68.2

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Find 124 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTACACAGAGAACACA+TGG	0.664446	6.3:+80470923	MS.gene61373:CDS
AACAAGATTGCTGTTCAAAT+TGG	0.227837	6.3:+80467531	MS.gene61373:intron
AACAATGCTGGAACAAATAA+AGG	0.317086	6.3:+80468881	MS.gene61373:CDS
AACTTGGTTATATTGACATT+TGG	0.298895	6.3:+80468527	MS.gene61373:CDS
AACTTTGCGGTCAGCGAACT+TGG	0.384243	6.3:+80468511	MS.gene61373:CDS
AAGCAGACCGACTTAGAAAC+TGG	0.348050	6.3:+80470860	MS.gene61373:CDS
AAGGCAAGCAAGATTCTAGG+AGG	0.670870	6.3:-80470227	None:intergenic
AAGGGGATTGGGCAAAGCAT+TGG	0.542264	6.3:+80468181	MS.gene61373:CDS
AATAAACATAAGCTAAGAAA+TGG	0.370948	6.3:+80466607	MS.gene61373:CDS
AATACTCACACGGCTGTCAG+AGG	0.628482	6.3:-80469241	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAAATTGTTGTGCTAA+TGG	+	chr6.3:80468721-80468740	MS.gene61373:intron	30.0%
AACAATGCTGGAACAAATAA+AGG	+	chr6.3:80468881-80468900	MS.gene61373:CDS	30.0%
AACAGTAGTTTCTTATCGAA+TGG	+	chr6.3:80469272-80469291	MS.gene61373:intron	30.0%
AAGAGTTATATGCATGTTTC+AGG	+	chr6.3:80470816-80470835	MS.gene61373:intron	30.0%
ACACAAAAGGACTAAAATGA+AGG	-	chr6.3:80470423-80470442	None:intergenic	30.0%
ACAGTAGTTTCTTATCGAAT+GGG	+	chr6.3:80469273-80469292	MS.gene61373:intron	30.0%
ACCAAGTAATTAAAGTGTAC+TGG	-	chr6.3:80470327-80470346	None:intergenic	30.0%
ACCAGTACACTTTAATTACT+TGG	+	chr6.3:80470323-80470342	MS.gene61373:intron	30.0%
ACTGTAAACAACATGATAGA+AGG	-	chr6.3:80469554-80469573	None:intergenic	30.0%
AGAGTTATATGCATGTTTCA+GGG	+	chr6.3:80470817-80470836	MS.gene61373:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	80466559	80471023	80466559	ID=MS.gene61373
chr6.3	mRNA	80466559	80471023	80466559	ID=MS.gene61373.t1;Parent=MS.gene61373
chr6.3	exon	80466559	80466906	80466559	ID=MS.gene61373.t1.exon1;Parent=MS.gene61373.t1
chr6.3	CDS	80466559	80466906	80466559	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80467537	80467615	80467537	ID=MS.gene61373.t1.exon2;Parent=MS.gene61373.t1
chr6.3	CDS	80467537	80467615	80467537	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80467786	80467921	80467786	ID=MS.gene61373.t1.exon3;Parent=MS.gene61373.t1
chr6.3	CDS	80467786	80467921	80467786	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80468178	80468252	80468178	ID=MS.gene61373.t1.exon4;Parent=MS.gene61373.t1
chr6.3	CDS	80468178	80468252	80468178	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80468354	80468549	80468354	ID=MS.gene61373.t1.exon5;Parent=MS.gene61373.t1
chr6.3	CDS	80468354	80468549	80468354	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80468878	80468946	80468878	ID=MS.gene61373.t1.exon6;Parent=MS.gene61373.t1
chr6.3	CDS	80468878	80468946	80468878	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80469115	80469254	80469115	ID=MS.gene61373.t1.exon7;Parent=MS.gene61373.t1
chr6.3	CDS	80469115	80469254	80469115	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80469757	80469879	80469757	ID=MS.gene61373.t1.exon8;Parent=MS.gene61373.t1
chr6.3	CDS	80469757	80469879	80469757	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80470100	80470292	80470100	ID=MS.gene61373.t1.exon9;Parent=MS.gene61373.t1
chr6.3	CDS	80470100	80470292	80470100	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1
chr6.3	exon	80470838	80471023	80470838	ID=MS.gene61373.t1.exon10;Parent=MS.gene61373.t1
chr6.3	CDS	80470838	80471023	80470838	ID=cds.MS.gene61373.t1;Parent=MS.gene61373.t1

Gene Sequence

>MS.gene61373

ATGGCTACTACAATTGTTAAGCTTCAAGTTTTTCCAGAGTGTAATTTGAATAAACATAAGCTAAGAAATGGATTTGGTAGCTCAAATTCTTCATCTGGGGTGTTTGGTTTTGGACAAAATTTTGGTGGGTTGTGTTTGAGAAAGTGTAGGGCTTTCAAGAGTGAAGATGGTGGTGGTTTGAAGGAGAAAAAGTGGAGAAATTTGAAGAAAAAGGAAGTGAAACTTCAAATAGAAAATGGGTTTTGGAGTAATTTTAGAAATGTTTTGTTGGGGAATTTTATGGTGGGTTCTAAGTTGGATGATGAGTATAGACAAGCTGTTGTTAGGGTTGATGAAGTTCTATCTAAGGTGAGTTCTTGTTTATGATGTTTTATCATTTTTTTTAATCTGTTTGGATAATTAATTGTTTTTATATAGCATAAGCACTTATCATATATGTATTTATGTATAAGATATTTGTTAGGGTTGATGAGGTTCTATGTATTAGTTATTTGTTAAGCACTTATCATTCTTGATTCTCTGTTTGGATTAACAACTTAATTGAGTGGTTTTAGCATATAAGTACTTATGGATAAGCTATTTCTATATCAGAAGATACAATTAAGTGTTTATCTATAACTTATTTTCATATGTTATATTGGAGAGCTTAGAAACATATGTATAGCTTATTTCTATAAGAAAAGATAAAATAAGTGCTTATCCATAACTTGTTTTCTTAAGTTAACTCAGAGAGTTACAGAATTGTGTTGAAAACAGCTTAAATAAATTGAAAATAGCATATGGAAATAAGCTGAAAACAACTTTTGGATATGTTTCAAGTTGTTTCCATAAATTTTTCCAACCAAAATAGTCTCATAAGTGCTTAATCTAGTAGATAGACTCAAATAAGCAAATCCGAAAAGGCCCTTGTAATGTTATTTCCTTTTGTGCTGTATTGAGTGTTGAATATAACTGTGTTTGTCTATGTGTATAAACAAGATTGCTGTTCAAATTGGAAGATATATTGTGACCATGATGAGCACTGGTGTCATCCTTGCAATCGGATTTCAGATGTCAGGTTGGTATATATTCTACTTTCATATTTTCGAATGTGAATATGAAAATATTTGCACTTGTAGTCGAGTTTCCGACAATAATGCAAACAAGTTTTACACTAACGTTCAATCATATCTCACCAAGATGCCTCGTATCATATGTGATGTTGATTTTTTTGGAAATTTTGTGAAGGTGGAGATAGTCAGATGGATGCACTGATATGGTATAGTTGGCTTGGAGGAGTTATCATTGGGACAATGATAGGTGCTAACTGGGTGTTGGAAGATTATTGTCGCGAAGGTCCACGTAATGTTGTCATAACTGGAAGGTAAATTCACTCACCGATAATATTCTAGAAATCGATTTCCAACATTTTTTGCTTTTTGATGAGCCTATGCACTCTTCTATGTAGTATCTTTCAGTTTTTTTGCAAAAATATCTACACGATTATCTACGTGGTGCGCTGTATTTGGATGCATGTATAAAAAAAAATTAACACTGATATTTCATACCGATTAAAGTTGATTACATCTAAGTTTTCTTTCATAATATTGACTCTTGCATCTTGTAAATTTTGTGTGCAGTACAAGGGGATTGGGCAAAGCATTGGCACGGGAGTTTCTTCTTTCGGGAGATCGTGTAATTGTTACTTCACGAAGGTGGTATCACAAACTATGTGAACATTTTATAACGATGAAATTAATATATTTTGTTGCTCACAACGTGTTGTTGCTCCCACTCTCAAATTTTGTGAAGGCAGCCCTGAGTCTGTGCAAGCAACTGTCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGTTCATCTTTGACAAAGCTTTCTCAAGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAGGCTAATGATGTTCAGAGATTGGCAAACTTTGCGGTCAGCGAACTTGGTTATATTGACATTTGGGTAAGTGTGGCTGTTCTTTCTATTGAGCACTATGTACCACTGACACTTGAGATTGAATGTGTCTTTGACACTTGACACGTGTCGGCATTAGATACCAACAAGATACTGACACATGTGGTTACATTCAATCACTTTAGCATAACATGAGTGTGGTTTTTTGCACATTAGCATAAAGGAAATTGTTGTGCTAATGGACCCTACTATCAATTTTGTTATCGCTTCAATGAAAGTTTTATATTGGATTCCTTATTTCTTGCTGAGTGTGGTTTCTGCTTTTTGGTCCTAATCTAATTTTTCATGTTGTTTTTTTATTCAAACTACTCAACAGATAAACAATGCTGGAACAAATAAAGGTTTTAGACCATTGCTTCAATTCAGTGACGAAGATATCAAACAGGTATGTAACTGCATAATTTCTTTTTTATTTTGTTGAAACATAAAGGCCGTTAAGTTAAGTTTTCTTTCATTCCGTCTAAGAATGAGATGTTGTAAAATTTCTTCTCATGAATGATTGTTTTTTCATCTTCATCCTTAACTTGAAAAGTTGTTTTTTTTTCTTCTGTAGATTGTCTCGACAAATTTGGTAGGTTCTATCCTTTGTACCCGAGAAGCCATGCGTATTATGAGAAACCAAACCAAGCCAGGCCATATATTTAATATGGACGGTGCAGGTTCCGGAGGGTCTAGCACACCTCTGACAGCCGTGTGAGTATTCTCTTGACAACAGTAGTTTCTTATCGAATGGGAGGATGTTAATCATTCCACCGAGCTTTATTTAACTTTAGGGCTCATGCACTTTTTCGTGTTTTCACTTCAATCAATAAACATGATTGATTATTGGTTCTATATTTTTCTCACTATTTTCTGTTGCAATTTTCAAAAACAGATTCAACATTTTTAAGAAATTCTGAGAATGCCAAATTTTTTTCCTTGTTTTTGAAAATGAATTCTCCCCAACTATCCTCCTATCTTCTCTCTATCACATATATTCACCACATGAGCCTTCTATCATGTTGTTTACAGTCTAAAATGAACACAAATTTAAGATAGTGAAAATTGAAAATGTTTTCTGAAACTAAGTGAGACATTCTATATGTTACTCGAAATATGCGTGATTGCGTGTATCTATGAATGAGTGTTCTTCAAAAGTCATGGCGGATAATGATTCCTGATGATGATGCTTACTTCCTTTTCATTTCTTGTGTAGCTATGGTTCTACAAAATGCGGCCTTAGACAATTTCATGGATCACTATTGACGGAGTGCAAGCGATCGAAAGTAGGTGTCCATACAGCATCTCCAGGCATGGTTCTCACAGAACTTCTTTTAAGGTAACATCTCTATTTGCAAACGTTTTGTTTTTTCGTGTGGACCGCTTTCCAGAATTTTCTTGTGTAGGAATTACCAACTTCTTTTTCTGTCGTCAACTATACTTTCAGCTCGTCCTTTTTAATCTTATAACGAATAGCATTCTTGTGTTTCTTTGTGTAACTTTCTCTGATCTAAGTTAATATAGTTTAATAATTCTTAGAAATGTGGCTTTTTTTGCAGTGGTTCAACTATCCAAAACAAGCAAATGTTCAATATCATATGTGAGCTTCCTGAAACTGTTGCTAGAACATTAGTTCCACGGATGCGAGTCGTTAAAGGAACTGGCAAGGCCATCAATTACTTGACTCCTCCTAGAATCTTGCTTGCCTTGGTCACTGCTTGGTTACGGCGAGGTCGCTGGTTTGATGATGAGGTATGTAATGGCGATAATTTTGAGGCTGAAACCAGTACACTTTAATTACTTGGTATTCTATCATATAAATGCTCATCTTTGAATATAGAATTAGGCTAAATTACACTTTTGGTCACATAAATATTTTCCTTCATTTTAGTCCTTTTGTGTTACAAACGTTGGTCACTTTGGCCCATTGACATTTGTTGGTTTCATATTTGTCCCTTAAGTTACAAATATCAGACACTTGCATCATTTCTCTCAGTTTTCTGTTTGAGTCCGTCAAATGTTTCATACGCGGCATTATGTTTTGGACCTTGCTGATTAGGCGCCTAACTCAAAAAGAAGACAGAAACATTTTACGAACTAAAACAGAAAACTGATAGAAAAGACCAAAGTGAAACTTAAAAATAACTGAAGGGACCAAAAGTGAAATTTAGGCTACTAATTACCTATGAATCACCGACACGGACACAGGACACGACACAGACACATAGTGTTTGATAGTAATTTTTAAAAATAGAAGTGGTTCAATGTAATTCTTAAGAGTTATATGCATGTTTCAGGGAAGAGCATTATACTCAGCCGAAGCAGACCGACTTAGAAACTGGGCCGAAAACCGCGCACGGTTTTCCTTCACCGATGCAATGGAAATGTACACAGAGAACACATGGTTATCAGTCTTCTCACTTTCAGTTGTTTGTGCATTCATAATTCTTTCTAGCACTAGCAGCAATTTGCCTGGAACATAA

Protein sequence

>MS.gene61373.t1

MATTIVKLQVFPECNLNKHKLRNGFGSSNSSSGVFGFGQNFGGLCLRKCRAFKSEDGGGLKEKKWRNLKKKEVKLQIENGFWSNFRNVLLGNFMVGSKLDDEYRQAVVRVDEVLSKIAVQIGRYIVTMMSTGVILAIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANWVLEDYCREGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATVKELEENLKEGIANAVGSSLTKLSQAKVVGIACDVCEANDVQRLANFAVSELGYIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRIMRNQTKPGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSLLTECKRSKVGVHTASPGMVLTELLLSGSTIQNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYSAEADRLRNWAENRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTSSNLPGT