Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63426.t1 | PNY16524.1 | 73.8 | 229 | 60 | 0 | 55 | 283 | 30 | 258 | 4.50E-93 | 351.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63426.t1 | A0A2K3PMN3 | 73.8 | 229 | 60 | 0 | 55 | 283 | 30 | 258 | 3.2e-93 | 351.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene63426 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene63426 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene63426 | 0.811906 | 5.54E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene63426 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene63426 | 0.822164 | 2.74E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene63426 | 0.807095 | 5.98E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene63426 | 0.82331 | 1.48E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene63426 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene63426 | 0.804697 | 1.91E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene63426 | 0.812601 | 3.91E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene63426 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene63426 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene63426 | 0.841534 | 4.48E-58 | -1.69E-46 |
| MS.gene055623 | MS.gene63426 | 0.820725 | 5.89E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene63426 | 0.825146 | 5.49E-54 | -1.69E-46 |
| MS.gene057394 | MS.gene63426 | 0.825256 | 5.18E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene63426 | 0.8074 | 5.15E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene63426 | 0.823878 | 1.09E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene63426 | 0.802113 | 6.54E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene63426 | 0.830395 | 3.01E-55 | -1.69E-46 |
| MS.gene059124 | MS.gene63426 | 0.816421 | 5.58E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene63426 | 0.823895 | 1.08E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene63426 | 0.838299 | 3.12E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene63426 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene63426 | 0.840626 | 7.77E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63426.t1 | MTR_2g046410 | 91.379 | 116 | 10 | 0 | 39 | 154 | 8 | 123 | 5.53e-70 | 221 |
| MS.gene63426.t1 | MTR_1914s0010 | 30.286 | 175 | 90 | 1 | 88 | 262 | 28 | 170 | 2.35e-21 | 90.5 |
| MS.gene63426.t1 | MTR_1g053380 | 26.908 | 249 | 136 | 4 | 14 | 262 | 26 | 228 | 1.25e-20 | 90.5 |
| MS.gene63426.t1 | MTR_0100s0070 | 36.538 | 104 | 66 | 0 | 97 | 200 | 38 | 141 | 2.55e-20 | 85.5 |
| MS.gene63426.t1 | MTR_0261s0010 | 35.484 | 93 | 60 | 0 | 88 | 180 | 31 | 123 | 8.83e-19 | 80.9 |
| MS.gene63426.t1 | MTR_8g019530 | 41.667 | 84 | 49 | 0 | 97 | 180 | 196 | 279 | 7.29e-17 | 79.3 |
| MS.gene63426.t1 | MTR_8g461860 | 34.000 | 100 | 63 | 1 | 82 | 178 | 21 | 120 | 2.16e-16 | 74.3 |
| MS.gene63426.t1 | MTR_0113s0060 | 25.000 | 200 | 116 | 3 | 58 | 256 | 49 | 215 | 3.09e-16 | 79.0 |
| MS.gene63426.t1 | MTR_1056s0010 | 27.174 | 184 | 87 | 2 | 82 | 262 | 21 | 160 | 3.83e-16 | 76.3 |
| MS.gene63426.t1 | MTR_0058s0020 | 40.000 | 70 | 42 | 0 | 82 | 151 | 22 | 91 | 7.72e-13 | 63.5 |
| MS.gene63426.t1 | MTR_0718s0040 | 40.625 | 64 | 38 | 0 | 88 | 151 | 31 | 94 | 2.53e-12 | 62.8 |
| MS.gene63426.t1 | MTR_8g445590 | 39.062 | 64 | 39 | 0 | 88 | 151 | 29 | 92 | 4.49e-12 | 62.0 |
| MS.gene63426.t1 | MTR_1g053430 | 39.062 | 64 | 39 | 0 | 88 | 151 | 31 | 94 | 9.32e-12 | 61.2 |
| MS.gene63426.t1 | MTR_1g053410 | 39.062 | 64 | 39 | 0 | 88 | 151 | 31 | 94 | 9.32e-12 | 61.2 |
| MS.gene63426.t1 | MTR_3g448540 | 26.241 | 141 | 79 | 3 | 79 | 218 | 20 | 136 | 2.54e-11 | 62.4 |
| MS.gene63426.t1 | MTR_1336s0010 | 35.821 | 67 | 43 | 0 | 85 | 151 | 22 | 88 | 4.58e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTCATTCCTCCTTGTTTC+AGG | 0.137796 | 4.4:+60693845 | None:intergenic |
| CACGATCCTCCACGATTTCT+TGG | 0.204306 | 4.4:-60694126 | MS.gene63426:CDS |
| TTTGCAGTCCTAGCACTTCT+AGG | 0.230928 | 4.4:+60693886 | None:intergenic |
| TTCCTGTGCATATCAGTGTT+TGG | 0.280833 | 4.4:+60694898 | None:intergenic |
| ATATGCATCTTACTTACTAT+TGG | 0.285200 | 4.4:-60694013 | MS.gene63426:CDS |
| AGGAGATGCAGTTTGGGAAT+TGG | 0.292320 | 4.4:-60694931 | MS.gene63426:CDS |
| TCCTGTGCATATCAGTGTTT+GGG | 0.305294 | 4.4:+60694899 | None:intergenic |
| ATTGAGTGTCTGGAGGAAAT+AGG | 0.307141 | 4.4:-60694951 | MS.gene63426:CDS |
| TTCGAGTGAGTTCTAGATTC+TGG | 0.314466 | 4.4:+60693446 | None:intergenic |
| AGGAAATAGGAGATGCAGTT+TGG | 0.335676 | 4.4:-60694938 | MS.gene63426:CDS |
| TTTCCAATGGCTGATGTAAC+TGG | 0.338056 | 4.4:+60693484 | None:intergenic |
| TATGCATCTTACTTACTATT+GGG | 0.372620 | 4.4:-60694012 | MS.gene63426:CDS |
| AGTTCCTTTCCACCAGTATT+CGG | 0.374095 | 4.4:+60693984 | None:intergenic |
| AACCAGAGAAAGCTGACTTA+TGG | 0.375519 | 4.4:-60694095 | MS.gene63426:CDS |
| TGCAGTTTGGGAATTGGATA+TGG | 0.377236 | 4.4:-60694925 | MS.gene63426:CDS |
| GTTACATCAGCCATTGGAAA+TGG | 0.382947 | 4.4:-60693481 | MS.gene63426:CDS |
| TAAGTCAGCTTTCTCTGGTT+CGG | 0.394222 | 4.4:+60694098 | None:intergenic |
| ATCCATAAGTCAGCTTTCTC+TGG | 0.396402 | 4.4:+60694093 | None:intergenic |
| CGTCATTCCTCCTTGTTTCA+GGG | 0.397216 | 4.4:+60693846 | None:intergenic |
| TACAATTTGCAGATAATGTC+GGG | 0.399963 | 4.4:-60695005 | None:intergenic |
| CTAACAATCAATATATTACT+TGG | 0.400573 | 4.4:-60693945 | MS.gene63426:CDS |
| GAACGAAACGCTGAAAATAA+AGG | 0.405688 | 4.4:-60694168 | MS.gene63426:CDS |
| TGAGTTCTAGATTCTGGTTT+CGG | 0.411694 | 4.4:+60693452 | None:intergenic |
| GAACCGAAGGATTGAGTGTC+TGG | 0.416168 | 4.4:-60694961 | MS.gene63426:CDS |
| GGAAATAGGAGATGCAGTTT+GGG | 0.418307 | 4.4:-60694937 | MS.gene63426:CDS |
| TATTGGGAGATGCCGAATAC+TGG | 0.420095 | 4.4:-60693996 | MS.gene63426:CDS |
| CCTCCAGACACTCAATCCTT+CGG | 0.423683 | 4.4:+60694958 | None:intergenic |
| AGCTCTTTCCATACCTCCTT+CGG | 0.426303 | 4.4:+60694278 | None:intergenic |
| TATTCAAGCTATGGCAGAAA+TGG | 0.428109 | 4.4:-60694256 | MS.gene63426:CDS |
| AACTACTGAAAAGGCTGAAA+GGG | 0.434631 | 4.4:-60694214 | MS.gene63426:CDS |
| TTCAGTAGTTTGTTCTGCAA+TGG | 0.440638 | 4.4:+60694227 | None:intergenic |
| GTTGGATATTTAGACCTAGA+TGG | 0.442309 | 4.4:+60693595 | None:intergenic |
| AGGACCAGGTGGATGAAGAT+TGG | 0.442604 | 4.4:-60693768 | MS.gene63426:CDS |
| TGCAGCAACGTTTGAGTCGT+TGG | 0.442835 | 4.4:-60693812 | MS.gene63426:CDS |
| CAGGAAGATAGAAGCAATGA+AGG | 0.477605 | 4.4:-60693650 | MS.gene63426:CDS |
| TGCAGAACAAACTACTGAAA+AGG | 0.489874 | 4.4:-60694223 | MS.gene63426:CDS |
| TGGCTATGTGAAGGATTTGA+AGG | 0.503175 | 4.4:-60693748 | MS.gene63426:CDS |
| TCGGTTTGATCCATTTCCAA+TGG | 0.514467 | 4.4:+60693471 | None:intergenic |
| AAACGCTGAAAATAAAGGAT+TGG | 0.530560 | 4.4:-60694163 | MS.gene63426:CDS |
| GGCTGATGTAACTGGACGAT+AGG | 0.537944 | 4.4:+60693492 | None:intergenic |
| AAGCAATACCGAAGGAGGTA+TGG | 0.538428 | 4.4:-60694286 | MS.gene63426:CDS |
| AAACTACTGAAAAGGCTGAA+AGG | 0.539653 | 4.4:-60694215 | MS.gene63426:CDS |
| GGAAAGAGCTATTCAAGCTA+TGG | 0.545696 | 4.4:-60694265 | MS.gene63426:CDS |
| GGATATTCGAAAGCAACAAA+GGG | 0.546128 | 4.4:-60694193 | MS.gene63426:CDS |
| GAAGTGTGGGTGGACCATCT+AGG | 0.546802 | 4.4:-60693609 | MS.gene63426:intron |
| AAACAAGGAGGAATGACGAT+TGG | 0.546824 | 4.4:-60693841 | MS.gene63426:CDS |
| GGGATATTCGAAAGCAACAA+AGG | 0.547460 | 4.4:-60694194 | MS.gene63426:CDS |
| AATCATATAGAAGCCGAAAA+CGG | 0.547606 | 4.4:-60694315 | MS.gene63426:intron |
| GAGGTGTTCTGACGAAGTAA+AGG | 0.549717 | 4.4:-60694040 | MS.gene63426:CDS |
| TGGAATCAATCGAGGAAGTG+TGG | 0.554352 | 4.4:-60693623 | MS.gene63426:CDS |
| ATAGAAGCAATGAAGGAAGG+TGG | 0.555130 | 4.4:-60693643 | MS.gene63426:CDS |
| GCTGATGTAACTGGACGATA+GGG | 0.556386 | 4.4:+60693493 | None:intergenic |
| CGTCCAGTTACATCAGCCAT+TGG | 0.557921 | 4.4:-60693487 | MS.gene63426:CDS |
| GGGAAGTCATTGAGTCACTC+GGG | 0.562221 | 4.4:-60694984 | MS.gene63426:CDS |
| TGAGTCACTCGGGGAACCGA+AGG | 0.576536 | 4.4:-60694974 | MS.gene63426:CDS |
| TAACAATCAATATATTACTT+GGG | 0.577300 | 4.4:-60693944 | MS.gene63426:CDS |
| TCCCAAACACTGATATGCAC+AGG | 0.582176 | 4.4:-60694900 | MS.gene63426:CDS |
| GGGGAAGTCATTGAGTCACT+CGG | 0.590627 | 4.4:-60694985 | MS.gene63426:CDS |
| TGGAATTGACGAATTTCTAG+TGG | 0.594365 | 4.4:+60693691 | None:intergenic |
| AAAAGATATTCGCTGTGTTG+AGG | 0.600068 | 4.4:-60694059 | MS.gene63426:CDS |
| TGGGAGATGCCGAATACTGG+TGG | 0.603074 | 4.4:-60693993 | MS.gene63426:CDS |
| GGAATCAATCGAGGAAGTGT+GGG | 0.604585 | 4.4:-60693622 | MS.gene63426:CDS |
| ATCAATCGAGGAAGTGTGGG+TGG | 0.605958 | 4.4:-60693619 | MS.gene63426:CDS |
| TCGGTTTCTCCAAGAAATCG+TGG | 0.618640 | 4.4:+60694117 | None:intergenic |
| GAATTTCTGACCCTGAAACA+AGG | 0.624632 | 4.4:-60693856 | MS.gene63426:CDS |
| AAGATAGAAGCAATGAAGGA+AGG | 0.625382 | 4.4:-60693646 | MS.gene63426:CDS |
| GATGCCGAATACTGGTGGAA+AGG | 0.627420 | 4.4:-60693988 | MS.gene63426:CDS |
| ATAGCCAATCTTCATCCACC+TGG | 0.629217 | 4.4:+60693764 | None:intergenic |
| GAGGCAAGCAATACCGAAGG+AGG | 0.630174 | 4.4:-60694291 | MS.gene63426:CDS |
| TAGAAGTGCTAGGACTGCAA+AGG | 0.636790 | 4.4:-60693884 | MS.gene63426:CDS |
| ACAATTTGCAGATAATGTCG+GGG | 0.658616 | 4.4:-60695004 | None:intergenic |
| TCGTTTCTTTCAGGACCAGG+TGG | 0.660576 | 4.4:-60693779 | MS.gene63426:CDS |
| GGAGAGGCAAGCAATACCGA+AGG | 0.661150 | 4.4:-60694294 | MS.gene63426:CDS |
| CCGAAGGATTGAGTGTCTGG+AGG | 0.663528 | 4.4:-60694958 | MS.gene63426:CDS |
| CTATGTGAAGGATTTGAAGG+CGG | 0.665309 | 4.4:-60693745 | MS.gene63426:CDS |
| GATGAAGATTGGCTATGTGA+AGG | 0.685036 | 4.4:-60693757 | MS.gene63426:CDS |
| AAGGAAGGTGGAATCAATCG+AGG | 0.691870 | 4.4:-60693631 | MS.gene63426:CDS |
| TATAGAAGCCGAAAACGGAG+AGG | 0.696787 | 4.4:-60694310 | MS.gene63426:intron |
| GGAAGTCATTGAGTCACTCG+GGG | 0.700450 | 4.4:-60694983 | MS.gene63426:CDS |
| TTTCTGACCCTGAAACAAGG+AGG | 0.730128 | 4.4:-60693853 | MS.gene63426:CDS |
| GTTTCTCCAAGAAATCGTGG+AGG | 0.742931 | 4.4:+60694120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATTATTTAATAATT+AGG | - | chr4.4:60694065-60694084 | MS.gene63426:CDS | 0.0% |
| !! | ATAAAAATAAATAAAACACA+AGG | + | chr4.4:60693767-60693786 | None:intergenic | 10.0% |
| !! | TAACAATCAATATATTACTT+GGG | - | chr4.4:60694504-60694523 | MS.gene63426:intron | 15.0% |
| !!! | CTTTTACTAGTAAATTAATT+TGG | + | chr4.4:60693869-60693888 | None:intergenic | 15.0% |
| !! | AGTCAAACTAATTAAACATA+AGG | + | chr4.4:60693617-60693636 | None:intergenic | 20.0% |
| !! | CTAACAATCAATATATTACT+TGG | - | chr4.4:60694503-60694522 | MS.gene63426:intron | 20.0% |
| !!! | AAAATATTTTCGTTTCTTTC+AGG | - | chr4.4:60694660-60694679 | MS.gene63426:intron | 20.0% |
| !!! | TAATTAGGTTCTAACTAATT+AGG | - | chr4.4:60694080-60694099 | MS.gene63426:CDS | 20.0% |
| ! | ATATGCATCTTACTTACTAT+TGG | - | chr4.4:60694435-60694454 | MS.gene63426:intron | 25.0% |
| ! | TATGCATCTTACTTACTATT+GGG | - | chr4.4:60694436-60694455 | MS.gene63426:intron | 25.0% |
| !! | TCTAACTAATTAGGACTTTT+AGG | - | chr4.4:60694089-60694108 | MS.gene63426:CDS | 25.0% |
| !!! | AACTAGTTTTTTGATTCCTA+TGG | + | chr4.4:60693588-60693607 | None:intergenic | 25.0% |
| AAACGCTGAAAATAAAGGAT+TGG | - | chr4.4:60694285-60694304 | MS.gene63426:CDS | 30.0% | |
| AATCATATAGAAGCCGAAAA+CGG | - | chr4.4:60694133-60694152 | MS.gene63426:CDS | 30.0% | |
| ACATTAATGGTATCAGAGTA+CGG | - | chr4.4:60693973-60693992 | MS.gene63426:CDS | 30.0% | |
| TTTCTATCGTTACGGAAAAT+GGG | - | chr4.4:60693945-60693964 | MS.gene63426:CDS | 30.0% | |
| ! | AACACCATTTTCTATCGTTA+CGG | - | chr4.4:60693937-60693956 | MS.gene63426:CDS | 30.0% |
| ! | CGAATATCTTTTCTATCTCT+TGG | + | chr4.4:60694381-60694400 | None:intergenic | 30.0% |
| ! | TTTTCCGTAACGATAGAAAA+TGG | + | chr4.4:60693944-60693963 | None:intergenic | 30.0% |
| ! | TTTTCTATCGTTACGGAAAA+TGG | - | chr4.4:60693944-60693963 | MS.gene63426:CDS | 30.0% |
| !! | GATTATTTCTACGACTCATT+GGG | + | chr4.4:60694117-60694136 | None:intergenic | 30.0% |
| !! | TGATTATTTCTACGACTCAT+TGG | + | chr4.4:60694118-60694137 | None:intergenic | 30.0% |
| AAAAGATATTCGCTGTGTTG+AGG | - | chr4.4:60694389-60694408 | MS.gene63426:intron | 35.0% | |
| AAACTACTGAAAAGGCTGAA+AGG | - | chr4.4:60694233-60694252 | MS.gene63426:CDS | 35.0% | |
| AACTACTGAAAAGGCTGAAA+GGG | - | chr4.4:60694234-60694253 | MS.gene63426:CDS | 35.0% | |
| AAGATAGAAGCAATGAAGGA+AGG | - | chr4.4:60694802-60694821 | MS.gene63426:intron | 35.0% | |
| AAGCACTTGTAGAAAAATGC+AGG | - | chr4.4:60694779-60694798 | MS.gene63426:intron | 35.0% | |
| ACGTTAATTATCTTGCCCTT+AGG | + | chr4.4:60693713-60693732 | None:intergenic | 35.0% | |
| AGGTCTAAATATCCAACTCA+AGG | - | chr4.4:60694859-60694878 | MS.gene63426:intron | 35.0% | |
| GAACGAAACGCTGAAAATAA+AGG | - | chr4.4:60694280-60694299 | MS.gene63426:CDS | 35.0% | |
| GGATATTCGAAAGCAACAAA+GGG | - | chr4.4:60694255-60694274 | MS.gene63426:CDS | 35.0% | |
| GGTCTAAATATCCAACTCAA+GGG | - | chr4.4:60694860-60694879 | MS.gene63426:intron | 35.0% | |
| GTTGGATATTTAGACCTAGA+TGG | + | chr4.4:60694856-60694875 | None:intergenic | 35.0% | |
| TATTCAAGCTATGGCAGAAA+TGG | - | chr4.4:60694192-60694211 | MS.gene63426:CDS | 35.0% | |
| TGATATGCACAGGAATAAGT+AGG | - | chr4.4:60693558-60693577 | MS.gene63426:intron | 35.0% | |
| TGCAGAACAAACTACTGAAA+AGG | - | chr4.4:60694225-60694244 | MS.gene63426:CDS | 35.0% | |
| TTCTATCGTTACGGAAAATG+GGG | - | chr4.4:60693946-60693965 | MS.gene63426:CDS | 35.0% | |
| ! | AAAATGGGGCGTTACATTAA+TGG | - | chr4.4:60693960-60693979 | MS.gene63426:CDS | 35.0% |
| ! | CGAGAGTAAGGCTTTTTATA+CGG | + | chr4.4:60694907-60694926 | None:intergenic | 35.0% |
| ! | TATACGGTTGCTTTCCTTTA+TGG | + | chr4.4:60694891-60694910 | None:intergenic | 35.0% |
| ! | TGCATTTTTCTACAAGTGCT+TGG | + | chr4.4:60694780-60694799 | None:intergenic | 35.0% |
| ! | TGGAATTGACGAATTTCTAG+TGG | + | chr4.4:60694760-60694779 | None:intergenic | 35.0% |
| !! | TATGACGTACTTTAACTTGC+AGG | - | chr4.4:60693641-60693660 | MS.gene63426:CDS | 35.0% |
| !! | TTCAGTAGTTTGTTCTGCAA+TGG | + | chr4.4:60694224-60694243 | None:intergenic | 35.0% |
| !!! | AGTATTTTCCTAGAAGTGCT+AGG | - | chr4.4:60694554-60694573 | MS.gene63426:intron | 35.0% |
| AAACAAGGAGGAATGACGAT+TGG | - | chr4.4:60694607-60694626 | MS.gene63426:intron | 40.0% | |
| AGCCTGAGTATGTAAACCTA+AGG | - | chr4.4:60693694-60693713 | MS.gene63426:CDS | 40.0% | |
| AGGAAATAGGAGATGCAGTT+TGG | - | chr4.4:60693510-60693529 | MS.gene63426:intron | 40.0% | |
| AGTTCCTTTCCACCAGTATT+CGG | + | chr4.4:60694467-60694486 | None:intergenic | 40.0% | |
| ATAGAAGCAATGAAGGAAGG+TGG | - | chr4.4:60694805-60694824 | MS.gene63426:intron | 40.0% | |
| ATCCATAAGTCAGCTTTCTC+TGG | + | chr4.4:60694358-60694377 | None:intergenic | 40.0% | |
| ATTGAGTGTCTGGAGGAAAT+AGG | - | chr4.4:60693497-60693516 | MS.gene63426:CDS | 40.0% | |
| CAGGAAGATAGAAGCAATGA+AGG | - | chr4.4:60694798-60694817 | MS.gene63426:intron | 40.0% | |
| CTAAATATCCAACTCAAGGG+TGG | - | chr4.4:60694863-60694882 | MS.gene63426:intron | 40.0% | |
| CTATGTGAAGGATTTGAAGG+CGG | - | chr4.4:60694703-60694722 | MS.gene63426:intron | 40.0% | |
| GAATTTCTGACCCTGAAACA+AGG | - | chr4.4:60694592-60694611 | MS.gene63426:intron | 40.0% | |
| GCCTGAGTATGTAAACCTAA+GGG | - | chr4.4:60693695-60693714 | MS.gene63426:CDS | 40.0% | |
| GGAAAGAGCTATTCAAGCTA+TGG | - | chr4.4:60694183-60694202 | MS.gene63426:CDS | 40.0% | |
| GGAAATAGGAGATGCAGTTT+GGG | - | chr4.4:60693511-60693530 | MS.gene63426:intron | 40.0% | |
| GGAATAAGTAGGACAACCAT+AGG | - | chr4.4:60693569-60693588 | MS.gene63426:intron | 40.0% | |
| GGGATATTCGAAAGCAACAA+AGG | - | chr4.4:60694254-60694273 | MS.gene63426:CDS | 40.0% | |
| GTTACATCAGCCATTGGAAA+TGG | - | chr4.4:60694967-60694986 | MS.gene63426:CDS | 40.0% | |
| TAAGTCAGCTTTCTCTGGTT+CGG | + | chr4.4:60694353-60694372 | None:intergenic | 40.0% | |
| TCCTGTGCATATCAGTGTTT+GGG | + | chr4.4:60693552-60693571 | None:intergenic | 40.0% | |
| TGCAGTTTGGGAATTGGATA+TGG | - | chr4.4:60693523-60693542 | MS.gene63426:intron | 40.0% | |
| TGGCTATGTGAAGGATTTGA+AGG | - | chr4.4:60694700-60694719 | MS.gene63426:intron | 40.0% | |
| TTACATACTCAGGCTTGTCT+GGG | + | chr4.4:60693689-60693708 | None:intergenic | 40.0% | |
| TTACTCACAGTTCGAGAGTA+AGG | + | chr4.4:60694919-60694938 | None:intergenic | 40.0% | |
| TTCCTGTGCATATCAGTGTT+TGG | + | chr4.4:60693553-60693572 | None:intergenic | 40.0% | |
| TTTACATACTCAGGCTTGTC+TGG | + | chr4.4:60693690-60693709 | None:intergenic | 40.0% | |
| TTTCCAATGGCTGATGTAAC+TGG | + | chr4.4:60694967-60694986 | None:intergenic | 40.0% | |
| ! | AACCAGAGAAAGCTGACTTA+TGG | - | chr4.4:60694353-60694372 | MS.gene63426:intron | 40.0% |
| ! | AGAGTACGGTTGATTCTTTC+GGG | - | chr4.4:60693987-60694006 | MS.gene63426:CDS | 40.0% |
| ! | CAGAGTACGGTTGATTCTTT+CGG | - | chr4.4:60693986-60694005 | MS.gene63426:CDS | 40.0% |
| ! | GATGAAGATTGGCTATGTGA+AGG | - | chr4.4:60694691-60694710 | MS.gene63426:intron | 40.0% |
| ! | TCGGTTTGATCCATTTCCAA+TGG | + | chr4.4:60694980-60694999 | None:intergenic | 40.0% |
| ! | TTTTCGTTTCTTTCAGGACC+AGG | - | chr4.4:60694666-60694685 | MS.gene63426:intron | 40.0% |
| AAGCAATACCGAAGGAGGTA+TGG | - | chr4.4:60694162-60694181 | MS.gene63426:CDS | 45.0% | |
| AAGGAAGGTGGAATCAATCG+AGG | - | chr4.4:60694817-60694836 | MS.gene63426:intron | 45.0% | |
| ACTCAAGGGTGGAACCATAA+AGG | - | chr4.4:60694874-60694893 | MS.gene63426:intron | 45.0% | |
| AGCTCTTTCCATACCTCCTT+CGG | + | chr4.4:60694173-60694192 | None:intergenic | 45.0% | |
| AGGAGATGCAGTTTGGGAAT+TGG | - | chr4.4:60693517-60693536 | MS.gene63426:intron | 45.0% | |
| ATAGCCAATCTTCATCCACC+TGG | + | chr4.4:60694687-60694706 | None:intergenic | 45.0% | |
| GATTCTTTCGGGAACGTTAG+AGG | - | chr4.4:60693998-60694017 | MS.gene63426:CDS | 45.0% | |
| GCCCTTAGGTTTACATACTC+AGG | + | chr4.4:60693699-60693718 | None:intergenic | 45.0% | |
| GCTGATGTAACTGGACGATA+GGG | + | chr4.4:60694958-60694977 | None:intergenic | 45.0% | |
| GTTTCTCCAAGAAATCGTGG+AGG | + | chr4.4:60694331-60694350 | None:intergenic | 45.0% | |
| TATAGAAGCCGAAAACGGAG+AGG | - | chr4.4:60694138-60694157 | MS.gene63426:CDS | 45.0% | |
| TATTGGGAGATGCCGAATAC+TGG | - | chr4.4:60694452-60694471 | MS.gene63426:intron | 45.0% | |
| TCCCAAACACTGATATGCAC+AGG | - | chr4.4:60693548-60693567 | MS.gene63426:intron | 45.0% | |
| TCGGTTTCTCCAAGAAATCG+TGG | + | chr4.4:60694334-60694353 | None:intergenic | 45.0% | |
| TGGAATCAATCGAGGAAGTG+TGG | - | chr4.4:60694825-60694844 | MS.gene63426:intron | 45.0% | |
| TTATGGTTCCACCCTTGAGT+TGG | + | chr4.4:60694874-60694893 | None:intergenic | 45.0% | |
| TTTCTGACCCTGAAACAAGG+AGG | - | chr4.4:60694595-60694614 | MS.gene63426:intron | 45.0% | |
| TTTGCAGTCCTAGCACTTCT+AGG | + | chr4.4:60694565-60694584 | None:intergenic | 45.0% | |
| ! | ATTGCTTGCCTCTCCGTTTT+CGG | + | chr4.4:60694149-60694168 | None:intergenic | 45.0% |
| ! | CGTCATTCCTCCTTGTTTCA+GGG | + | chr4.4:60694605-60694624 | None:intergenic | 45.0% |
| ! | GAGGTGTTCTGACGAAGTAA+AGG | - | chr4.4:60694408-60694427 | MS.gene63426:intron | 45.0% |
| ! | GGAATCAATCGAGGAAGTGT+GGG | - | chr4.4:60694826-60694845 | MS.gene63426:intron | 45.0% |
| ! | TCGTCATTCCTCCTTGTTTC+AGG | + | chr4.4:60694606-60694625 | None:intergenic | 45.0% |
| !! | TAGAAGTGCTAGGACTGCAA+AGG | - | chr4.4:60694564-60694583 | MS.gene63426:intron | 45.0% |
| AGGACCAGGTGGATGAAGAT+TGG | - | chr4.4:60694680-60694699 | MS.gene63426:intron | 50.0% | |
| CACGATCCTCCACGATTTCT+TGG | - | chr4.4:60694322-60694341 | MS.gene63426:intron | 50.0% | |
| CCTCCAGACACTCAATCCTT+CGG | + | chr4.4:60693493-60693512 | None:intergenic | 50.0% | |
| CGTCCAGTTACATCAGCCAT+TGG | - | chr4.4:60694961-60694980 | MS.gene63426:CDS | 50.0% | |
| GAACCGAAGGATTGAGTGTC+TGG | - | chr4.4:60693487-60693506 | MS.gene63426:CDS | 50.0% | |
| GATGCCGAATACTGGTGGAA+AGG | - | chr4.4:60694460-60694479 | MS.gene63426:intron | 50.0% | |
| GGAAGTCATTGAGTCACTCG+GGG | - | chr4.4:60693465-60693484 | MS.gene63426:CDS | 50.0% | |
| GGCTGATGTAACTGGACGAT+AGG | + | chr4.4:60694959-60694978 | None:intergenic | 50.0% | |
| GGGAAGTCATTGAGTCACTC+GGG | - | chr4.4:60693464-60693483 | MS.gene63426:CDS | 50.0% | |
| GGGGAAGTCATTGAGTCACT+CGG | - | chr4.4:60693463-60693482 | MS.gene63426:CDS | 50.0% | |
| TCGTTTCTTTCAGGACCAGG+TGG | - | chr4.4:60694669-60694688 | MS.gene63426:intron | 50.0% | |
| TGCAGCAACGTTTGAGTCGT+TGG | - | chr4.4:60694636-60694655 | MS.gene63426:intron | 50.0% | |
| ! | ATCAATCGAGGAAGTGTGGG+TGG | - | chr4.4:60694829-60694848 | MS.gene63426:intron | 50.0% |
| CCGAAGGATTGAGTGTCTGG+AGG | - | chr4.4:60693490-60693509 | MS.gene63426:CDS | 55.0% | |
| GAAGTGTGGGTGGACCATCT+AGG | - | chr4.4:60694839-60694858 | MS.gene63426:intron | 55.0% | |
| GAGGCAAGCAATACCGAAGG+AGG | - | chr4.4:60694157-60694176 | MS.gene63426:CDS | 55.0% | |
| GGAGAGGCAAGCAATACCGA+AGG | - | chr4.4:60694154-60694173 | MS.gene63426:CDS | 55.0% | |
| TGGGAGATGCCGAATACTGG+TGG | - | chr4.4:60694455-60694474 | MS.gene63426:intron | 55.0% | |
| TGAGTCACTCGGGGAACCGA+AGG | - | chr4.4:60693474-60693493 | MS.gene63426:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 60693458 | 60695012 | 60693458 | ID=MS.gene63426 |
| chr4.4 | mRNA | 60693458 | 60695012 | 60693458 | ID=MS.gene63426.t1;Parent=MS.gene63426 |
| chr4.4 | exon | 60694895 | 60695012 | 60694895 | ID=MS.gene63426.t1.exon1;Parent=MS.gene63426.t1 |
| chr4.4 | CDS | 60694895 | 60695012 | 60694895 | ID=cds.MS.gene63426.t1;Parent=MS.gene63426.t1 |
| chr4.4 | exon | 60693610 | 60694327 | 60693610 | ID=MS.gene63426.t1.exon2;Parent=MS.gene63426.t1 |
| chr4.4 | CDS | 60693610 | 60694327 | 60693610 | ID=cds.MS.gene63426.t1;Parent=MS.gene63426.t1 |
| chr4.4 | exon | 60693458 | 60693524 | 60693458 | ID=MS.gene63426.t1.exon3;Parent=MS.gene63426.t1 |
| chr4.4 | CDS | 60693458 | 60693524 | 60693458 | ID=cds.MS.gene63426.t1;Parent=MS.gene63426.t1 |
| Gene Sequence |
| Protein sequence |
