AlfalfaGEDB | MS.gene64276

M. sativa cultivar XinJiangDaYe / MS.gene64276

KEGG: -
GO: -
PFAM: PF03018.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64276.t1	KEH41194.1	97.9	236	5	0	1	236	1	236	2.40E-110	408.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64276.t1	Q9T0H8	63.7	234	78	2	3	236	18	244	4.4e-76	285.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64276.t1	A0A072VGM0	97.9	236	5	0	1	236	1	236	1.8e-110	408.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene64276	0.823318	1.48E-53	-1.69E-46
MS.gene049549	MS.gene64276	0.840053	1.10E-57	-1.69E-46
MS.gene051138	MS.gene64276	0.802052	6.73E-49	-1.69E-46
MS.gene051973	MS.gene64276	0.813612	2.34E-51	-1.69E-46
MS.gene051996	MS.gene64276	0.817057	4.02E-52	-1.69E-46
MS.gene052211	MS.gene64276	0.835717	1.43E-56	-1.69E-46
MS.gene052212	MS.gene64276	0.803457	3.45E-49	-1.69E-46
MS.gene05240	MS.gene64276	0.830358	3.07E-55	-1.69E-46
MS.gene052606	MS.gene64276	0.800787	1.22E-48	-1.69E-46
MS.gene052702	MS.gene64276	0.802374	5.78E-49	-1.69E-46
MS.gene053887	MS.gene64276	0.808332	3.26E-50	-1.69E-46
MS.gene054146	MS.gene64276	0.806277	8.89E-50	-1.69E-46
MS.gene054181	MS.gene64276	0.809403	1.93E-50	-1.69E-46
MS.gene054277	MS.gene64276	0.820662	6.09E-53	-1.69E-46
MS.gene054742	MS.gene64276	0.844442	7.54E-59	-1.69E-46
MS.gene054884	MS.gene64276	0.801093	1.06E-48	-1.69E-46
MS.gene055240	MS.gene64276	0.828263	9.91E-55	-1.69E-46
MS.gene056218	MS.gene64276	0.807816	4.20E-50	-1.69E-46
MS.gene056694	MS.gene64276	0.808873	2.50E-50	-1.69E-46
MS.gene056697	MS.gene64276	0.806861	6.70E-50	-1.69E-46
MS.gene056748	MS.gene64276	0.835673	1.46E-56	-1.69E-46
MS.gene056856	MS.gene64276	0.802115	6.54E-49	-1.69E-46
MS.gene056920	MS.gene64276	0.834914	2.27E-56	-1.69E-46
MS.gene056922	MS.gene64276	0.817909	2.58E-52	-1.69E-46
MS.gene056923	MS.gene64276	0.803226	3.86E-49	-1.69E-46
MS.gene056988	MS.gene64276	0.805865	1.09E-49	-1.69E-46
MS.gene057261	MS.gene64276	0.853495	2.30E-61	-1.69E-46
MS.gene057820	MS.gene64276	0.810757	9.84E-51	-1.69E-46
MS.gene058603	MS.gene64276	0.801113	1.05E-48	-1.69E-46
MS.gene059328	MS.gene64276	0.805782	1.13E-49	-1.69E-46
MS.gene059953	MS.gene64276	0.803122	4.05E-49	-1.69E-46
MS.gene059955	MS.gene64276	0.838262	3.19E-57	-1.69E-46
MS.gene060087	MS.gene64276	0.827915	1.20E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64276.t1	MTR_1g046490	97.881	236	5	0	1	236	1	236	7.67e-168	462
MS.gene64276.t1	MTR_1g046800	89.565	230	22	1	7	236	23	250	2.45e-147	411
MS.gene64276.t1	MTR_1g046500	90.000	230	21	1	7	236	23	250	4.10e-143	400
MS.gene64276.t1	MTR_4g062470	42.982	228	109	6	23	236	84	304	4.37e-40	140
MS.gene64276.t1	MTR_4g062520	42.795	229	109	6	23	236	82	303	5.17e-40	139
MS.gene64276.t1	MTR_1g115510	38.235	238	124	6	19	236	119	353	6.59e-38	135
MS.gene64276.t1	MTR_7g021300	36.328	256	123	8	5	234	146	387	1.98e-37	135
MS.gene64276.t1	MTR_4g062460	38.596	228	120	7	21	234	36	257	1.49e-34	124
MS.gene64276.t1	MTR_1g115515	27.854	219	126	4	23	236	43	234	1.73e-17	79.0
MS.gene64276.t1	MTR_1g054525	35.780	109	67	2	104	209	62	170	3.19e-15	72.0
MS.gene64276.t1	MTR_4g049550	37.069	116	64	3	122	234	66	175	1.10e-14	70.1
MS.gene64276.t1	MTR_4g122110	37.079	89	55	1	120	207	66	154	3.13e-14	68.9
MS.gene64276.t1	MTR_7g093790	41.053	95	54	2	119	211	75	169	6.05e-14	68.6
MS.gene64276.t1	MTR_4g122130	39.000	100	58	3	114	211	60	158	8.33e-14	67.8
MS.gene64276.t1	MTR_4g013385	40.000	90	53	1	122	210	78	167	1.04e-13	67.8
MS.gene64276.t1	MTR_0433s0040	40.000	90	53	1	122	210	78	167	1.04e-13	67.8
MS.gene64276.t1	MTR_7g093820	38.947	95	56	2	119	211	78	172	1.81e-13	67.0
MS.gene64276.t1	MTR_7g093850	40.000	95	55	2	119	211	78	172	2.15e-13	67.0
MS.gene64276.t1	MTR_7g093830	38.947	95	56	2	119	211	77	171	3.24e-13	66.2
MS.gene64276.t1	MTR_4g049570	34.211	114	70	2	122	234	66	175	5.17e-13	65.5
MS.gene64276.t1	MTR_4g013335	36.667	90	56	1	121	209	83	172	5.71e-13	65.9
MS.gene64276.t1	MTR_4g013310	30.147	136	84	3	106	236	67	196	6.88e-13	65.5
MS.gene64276.t1	MTR_4g013325	36.667	90	56	1	121	209	86	175	1.12e-12	65.1
MS.gene64276.t1	MTR_4g013770	38.298	94	57	1	121	213	78	171	2.26e-12	63.9
MS.gene64276.t1	MTR_3g034030	32.407	108	72	1	102	208	53	160	5.02e-12	63.2
MS.gene64276.t1	MTR_4g078885	31.481	108	73	1	102	208	53	160	2.82e-11	60.8
MS.gene64276.t1	MTR_7g093870	36.082	97	56	2	120	211	76	171	4.71e-11	60.8
MS.gene64276.t1	MTR_4g013345	35.955	89	56	1	122	209	84	172	6.41e-11	60.1
MS.gene64276.t1	MTR_5g096120	41.304	92	52	1	122	211	76	167	7.95e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64276.t1	AT4G13580	69.231	234	65	2	3	236	18	244	1.21e-109	315
MS.gene64276.t1	AT3G24020	66.949	236	71	2	1	236	15	243	4.04e-109	314
MS.gene64276.t1	AT1G07730	44.348	230	106	6	25	236	164	389	8.88e-44	152
MS.gene64276.t1	AT2G28670	46.087	230	100	6	27	236	1	226	1.66e-42	144
MS.gene64276.t1	AT3G55230	39.918	243	124	7	15	236	62	303	4.17e-42	145
MS.gene64276.t1	AT2G28670	46.121	232	101	6	25	236	209	436	1.24e-41	147
MS.gene64276.t1	AT2G39430	40.496	242	122	8	16	236	80	320	2.53e-41	144
MS.gene64276.t1	AT1G65870	33.636	110	70	2	108	214	62	171	1.34e-14	70.1
MS.gene64276.t1	AT5G42510	38.043	92	56	1	118	208	69	160	1.81e-13	67.0
MS.gene64276.t1	AT3G13650	34.409	93	60	1	122	213	74	166	2.89e-13	66.6
MS.gene64276.t1	AT5G42500	35.484	93	59	1	120	211	74	166	9.11e-13	65.1
MS.gene64276.t1	AT3G58090	34.091	88	57	1	125	211	163	250	3.61e-12	64.7
MS.gene64276.t1	AT5G49030	35.165	91	58	1	122	211	79	169	4.14e-12	65.9
MS.gene64276.t1	AT5G49040	35.165	91	58	1	122	211	79	169	4.23e-11	60.5
MS.gene64276.t1	AT1G22900	36.364	88	55	1	122	208	84	171	5.43e-11	60.5
MS.gene64276.t1	AT4G38700	36.082	97	57	3	120	211	72	168	7.00e-11	60.1

Find 73 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGACCTGATGGACTTGGATT+AGG	0.267549	1.3:+28163039	MS.gene64276:CDS
TCCTTTCCTGTGGCTGCAAT+TGG	0.276263	1.3:-28162736	None:intergenic
CCTACTGTTAATGGTGTTAC+TGG	0.279068	1.3:+28162931	MS.gene64276:CDS
GGATTAGCACCATTTGCATT+AGG	0.295406	1.3:-28162910	None:intergenic
GGTGCTAATCCTACTGTTAA+TGG	0.300360	1.3:+28162922	MS.gene64276:CDS
GACCTGATGGACTTGGATTA+GGG	0.360686	1.3:+28163040	MS.gene64276:CDS
GATTAGCACCATTTGCATTA+GGG	0.363396	1.3:-28162909	None:intergenic
TTAACATCTCAACCAGAGTT+AGG	0.377354	1.3:+28163093	MS.gene64276:CDS
CCAGCTAAACCAGTTCCTAA+TGG	0.378420	1.3:-28162958	None:intergenic
TGATTGTTATTGTTGTTGTT+TGG	0.384388	1.3:-28162994	None:intergenic
AAGTACTATGTCGCGATTGT+CGG	0.386251	1.3:+28163257	MS.gene64276:CDS
CTTGGAATGTTGAATCCAAC+TGG	0.413683	1.3:-28162871	None:intergenic
ACAAATTGTTGGAAAGGGTC+AGG	0.415848	1.3:+28163119	MS.gene64276:CDS
GGTGTTACTGGTATCCCATT+AGG	0.418329	1.3:+28162943	MS.gene64276:CDS
ACCTGTCCAGGTGGAATAAG+AGG	0.418722	1.3:-28163333	None:intergenic
TTGTTCATGCATGACATTCT+TGG	0.422552	1.3:+28162772	MS.gene64276:CDS
GATGGACTTGGATTAGGGTT+TGG	0.426030	1.3:+28163045	MS.gene64276:CDS
TTGTCGGTTGTAGGAGGGAC+GGG	0.426417	1.3:+28163273	MS.gene64276:CDS
CAGCTAAACCAGTTCCTAAT+GGG	0.429060	1.3:-28162957	None:intergenic
GGGAAGTTTAAGTATGCAAA+AGG	0.440542	1.3:+28163294	MS.gene64276:CDS
ATACTCATCAGTACTTCAAA+TGG	0.444661	1.3:-28163395	None:intergenic
CCGGTCACTGGTCGAGCCGT+TGG	0.445896	1.3:-28162805	None:intergenic
ACTGGTATCCCATTAGGAAC+TGG	0.446148	1.3:+28162949	MS.gene64276:CDS
ACCTCTTATTCCACCTGGAC+AGG	0.449379	1.3:+28163332	MS.gene64276:CDS
GCACCATTTGCATTAGGGAT+TGG	0.453359	1.3:-28162904	None:intergenic
AACAATGTTCAGTTAACGTT+AGG	0.471550	1.3:+28163018	MS.gene64276:CDS
CCATTAGGAACTGGTTTAGC+TGG	0.473165	1.3:+28162958	MS.gene64276:CDS
AACCCTAATCCAAGTCCATC+AGG	0.473769	1.3:-28163042	None:intergenic
GGTTCACAAATTGTTGGAAA+GGG	0.477487	1.3:+28163114	MS.gene64276:CDS
TGCATGAACAACTCAATGAT+TGG	0.478315	1.3:-28162760	None:intergenic
ATGTCGCGATTGTCGGTTGT+AGG	0.484227	1.3:+28163264	MS.gene64276:CDS
CGGTCACTGGTCGAGCCGTT+GGG	0.485879	1.3:-28162804	None:intergenic
CAAATTGTTGGAAAGGGTCA+GGG	0.488459	1.3:+28163120	MS.gene64276:CDS
ATGCCAATCCCTAATGCAAA+TGG	0.503234	1.3:+28162901	MS.gene64276:CDS
ATTGTTGTTGTTTGGTGCAA+AGG	0.507799	1.3:-28162986	None:intergenic
GAGTTAGGTTCACAAATTGT+TGG	0.509703	1.3:+28163108	MS.gene64276:CDS
CGACCAGTGACCGGTTTGCT+CGG	0.510231	1.3:+28162814	MS.gene64276:CDS
TCGCGATTGTCGGTTGTAGG+AGG	0.512692	1.3:+28163267	MS.gene64276:CDS
CCTGGACAGGTTGCTACTGA+TGG	0.513998	1.3:+28163345	MS.gene64276:CDS
ATGTAGCAAGTTCGGCTGAC+GGG	0.514478	1.3:+28163148	MS.gene64276:CDS
AGGTTCACAAATTGTTGGAA+AGG	0.517920	1.3:+28163113	MS.gene64276:CDS
ACGTTAGGACCTGATGGACT+TGG	0.520993	1.3:+28163033	MS.gene64276:CDS
CCATCAGTAGCAACCTGTCC+AGG	0.527354	1.3:-28163345	None:intergenic
GAATCCAACTGGGGTTGCAA+AGG	0.532298	1.3:-28162860	None:intergenic
ACAATTTGTGAACCTAACTC+TGG	0.539499	1.3:-28163105	None:intergenic
GTATATGTTGCCGAGCAAAC+CGG	0.541501	1.3:-28162824	None:intergenic
CTGAGACCTCTTATTCCACC+TGG	0.543896	1.3:+28163327	MS.gene64276:CDS
AATCCAACTGGGGTTGCAAA+GGG	0.544346	1.3:-28162859	None:intergenic
AATGATTGGTTCCTTTCCTG+TGG	0.544898	1.3:-28162746	None:intergenic
GGGATTGGCATACTATCACT+TGG	0.545050	1.3:-28162889	None:intergenic
TTGCCGAGCAAACCGGTCAC+TGG	0.546279	1.3:-28162817	None:intergenic
GTACCCTTTGCAACCCCAGT+TGG	0.549320	1.3:+28162856	MS.gene64276:CDS
GGAAGTTTAAGTATGCAAAA+GGG	0.559845	1.3:+28163295	MS.gene64276:CDS
TTCATGCATGACATTCTTGG+AGG	0.561309	1.3:+28162775	MS.gene64276:CDS
TCCAATTGCAGCCACAGGAA+AGG	0.562874	1.3:+28162735	MS.gene64276:CDS
TGACGGGAGTAGACAGATGA+TGG	0.563922	1.3:+28163164	MS.gene64276:CDS
ATTGATCCAATTGCAGCCAC+AGG	0.569919	1.3:+28162730	MS.gene64276:CDS
CGCGATTGTCGGTTGTAGGA+GGG	0.572138	1.3:+28163268	MS.gene64276:CDS
CCAGTAACACCATTAACAGT+AGG	0.579036	1.3:-28162931	None:intergenic
CAGTTAACGTTAGGACCTGA+TGG	0.580607	1.3:+28163027	MS.gene64276:CDS
AAATTGTTGGAAAGGGTCAG+GGG	0.581072	1.3:+28163121	MS.gene64276:CDS
TACCATTGCAATGATGGCAA+TGG	0.586210	1.3:+28162690	None:intergenic
TATGTAGCAAGTTCGGCTGA+CGG	0.590795	1.3:+28163147	MS.gene64276:CDS
TGTCGGTTGTAGGAGGGACG+GGG	0.591191	1.3:+28163274	MS.gene64276:CDS
ATTGTCGGTTGTAGGAGGGA+CGG	0.596598	1.3:+28163272	MS.gene64276:CDS
CCAACGGCTCGACCAGTGAC+CGG	0.606503	1.3:+28162805	MS.gene64276:CDS
TTGGAATGTTGAATCCAACT+GGG	0.618283	1.3:-28162870	None:intergenic
TCAGTAGCAACCTGTCCAGG+TGG	0.657359	1.3:-28163342	None:intergenic
AATTGTTGGAAAGGGTCAGG+GGG	0.661911	1.3:+28163122	MS.gene64276:CDS
ATGGTGCTGAGACTTTGTTG+AGG	0.693982	1.3:+28163364	MS.gene64276:CDS
TTGCTCGGCAACATATACAG+TGG	0.727097	1.3:+28162829	MS.gene64276:CDS
TCTTGGAGGAAGTAACCCAA+CGG	0.728715	1.3:+28162789	MS.gene64276:CDS
TGGAATGTTGAATCCAACTG+GGG	0.746650	1.3:-28162869	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATGGTTTGTATAAGAT+TGG	+	chr1.3:28163234-28163253	MS.gene64276:CDS	20.0%
!!	GGTGATAGTTTGAATTTTTA+TGG	+	chr1.3:28163219-28163238	MS.gene64276:CDS	25.0%
!!	TGATTGTTATTGTTGTTGTT+TGG	-	chr1.3:28162997-28163016	None:intergenic	25.0%
	AACAATGTTCAGTTAACGTT+AGG	+	chr1.3:28163018-28163037	MS.gene64276:CDS	30.0%
	GGAAGTTTAAGTATGCAAAA+GGG	+	chr1.3:28163295-28163314	MS.gene64276:CDS	30.0%
!!	GTTTTTACAGCACTTTTTGA+AGG	+	chr1.3:28163186-28163205	MS.gene64276:CDS	30.0%
	ACAATTTGTGAACCTAACTC+TGG	-	chr1.3:28163108-28163127	None:intergenic	35.0%
	AGGTTCACAAATTGTTGGAA+AGG	+	chr1.3:28163113-28163132	MS.gene64276:CDS	35.0%
	GAGTTAGGTTCACAAATTGT+TGG	+	chr1.3:28163108-28163127	MS.gene64276:CDS	35.0%
	GATTAGCACCATTTGCATTA+GGG	-	chr1.3:28162912-28162931	None:intergenic	35.0%
	GGGAAGTTTAAGTATGCAAA+AGG	+	chr1.3:28163294-28163313	MS.gene64276:CDS	35.0%
	GGTTCACAAATTGTTGGAAA+GGG	+	chr1.3:28163114-28163133	MS.gene64276:CDS	35.0%
	TGCATGAACAACTCAATGAT+TGG	-	chr1.3:28162763-28162782	None:intergenic	35.0%
	TTAACATCTCAACCAGAGTT+AGG	+	chr1.3:28163093-28163112	MS.gene64276:CDS	35.0%
	TTGGAATGTTGAATCCAACT+GGG	-	chr1.3:28162873-28162892	None:intergenic	35.0%
	TTGTTCATGCATGACATTCT+TGG	+	chr1.3:28162772-28162791	MS.gene64276:CDS	35.0%
!!	ATTGTTGTTGTTTGGTGCAA+AGG	-	chr1.3:28162989-28163008	None:intergenic	35.0%
!!	TTACAGCACTTTTTGAAGGA+GGG	+	chr1.3:28163190-28163209	MS.gene64276:CDS	35.0%
!!	TTTACAGCACTTTTTGAAGG+AGG	+	chr1.3:28163189-28163208	MS.gene64276:CDS	35.0%
	AAATTGTTGGAAAGGGTCAG+GGG	+	chr1.3:28163121-28163140	MS.gene64276:CDS	40.0%
	AAGTACTATGTCGCGATTGT+CGG	+	chr1.3:28163257-28163276	MS.gene64276:CDS	40.0%
	ACAAATTGTTGGAAAGGGTC+AGG	+	chr1.3:28163119-28163138	MS.gene64276:CDS	40.0%
	ATGCCAATCCCTAATGCAAA+TGG	+	chr1.3:28162901-28162920	MS.gene64276:CDS	40.0%
	CAAATTGTTGGAAAGGGTCA+GGG	+	chr1.3:28163120-28163139	MS.gene64276:CDS	40.0%
	CAGCTAAACCAGTTCCTAAT+GGG	-	chr1.3:28162960-28162979	None:intergenic	40.0%
	CCAGTAACACCATTAACAGT+AGG	-	chr1.3:28162934-28162953	None:intergenic	40.0%
	CTTGGAATGTTGAATCCAAC+TGG	-	chr1.3:28162874-28162893	None:intergenic	40.0%
	GGTGCTAATCCTACTGTTAA+TGG	+	chr1.3:28162922-28162941	MS.gene64276:CDS	40.0%
	TGGAATGTTGAATCCAACTG+GGG	-	chr1.3:28162872-28162891	None:intergenic	40.0%
	TTCATGCATGACATTCTTGG+AGG	+	chr1.3:28162775-28162794	MS.gene64276:CDS	40.0%
!	AATGATTGGTTCCTTTCCTG+TGG	-	chr1.3:28162749-28162768	None:intergenic	40.0%
!	GGATTAGCACCATTTGCATT+AGG	-	chr1.3:28162913-28162932	None:intergenic	40.0%
!!	CCTACTGTTAATGGTGTTAC+TGG	+	chr1.3:28162931-28162950	MS.gene64276:CDS	40.0%
!!	TACAGCACTTTTTGAAGGAG+GGG	+	chr1.3:28163191-28163210	MS.gene64276:CDS	40.0%
	AACCCTAATCCAAGTCCATC+AGG	-	chr1.3:28163045-28163064	None:intergenic	45.0%
	AATCCAACTGGGGTTGCAAA+GGG	-	chr1.3:28162862-28162881	None:intergenic	45.0%
	AATTGTTGGAAAGGGTCAGG+GGG	+	chr1.3:28163122-28163141	MS.gene64276:CDS	45.0%
	ACTGGTATCCCATTAGGAAC+TGG	+	chr1.3:28162949-28162968	MS.gene64276:CDS	45.0%
	ATTGATCCAATTGCAGCCAC+AGG	+	chr1.3:28162730-28162749	MS.gene64276:CDS	45.0%
	CAGTTAACGTTAGGACCTGA+TGG	+	chr1.3:28163027-28163046	MS.gene64276:CDS	45.0%
	CCAGCTAAACCAGTTCCTAA+TGG	-	chr1.3:28162961-28162980	None:intergenic	45.0%
	GCACCATTTGCATTAGGGAT+TGG	-	chr1.3:28162907-28162926	None:intergenic	45.0%
	GTATATGTTGCCGAGCAAAC+CGG	-	chr1.3:28162827-28162846	None:intergenic	45.0%
	TATGTAGCAAGTTCGGCTGA+CGG	+	chr1.3:28163147-28163166	MS.gene64276:CDS	45.0%
	TCTTGGAGGAAGTAACCCAA+CGG	+	chr1.3:28162789-28162808	MS.gene64276:CDS	45.0%
	TTGCTCGGCAACATATACAG+TGG	+	chr1.3:28162829-28162848	MS.gene64276:CDS	45.0%
!	ATGGTGCTGAGACTTTGTTG+AGG	+	chr1.3:28163364-28163383	MS.gene64276:CDS	45.0%
!	CCATTAGGAACTGGTTTAGC+TGG	+	chr1.3:28162958-28162977	MS.gene64276:CDS	45.0%
!	GATGGACTTGGATTAGGGTT+TGG	+	chr1.3:28163045-28163064	MS.gene64276:CDS	45.0%
!	GGGATTGGCATACTATCACT+TGG	-	chr1.3:28162892-28162911	None:intergenic	45.0%
!!	CTTTTTGAAGGAGGGGAGTA+TGG	+	chr1.3:28163198-28163217	MS.gene64276:CDS	45.0%
!!	GACCTGATGGACTTGGATTA+GGG	+	chr1.3:28163040-28163059	MS.gene64276:CDS	45.0%
!!	GGTGTTACTGGTATCCCATT+AGG	+	chr1.3:28162943-28162962	MS.gene64276:CDS	45.0%
	ACCTCTTATTCCACCTGGAC+AGG	+	chr1.3:28163332-28163351	MS.gene64276:CDS	50.0%
	ACCTGTCCAGGTGGAATAAG+AGG	-	chr1.3:28163336-28163355	None:intergenic	50.0%
	ATGTAGCAAGTTCGGCTGAC+GGG	+	chr1.3:28163148-28163167	MS.gene64276:CDS	50.0%
	CTGAGACCTCTTATTCCACC+TGG	+	chr1.3:28163327-28163346	MS.gene64276:CDS	50.0%
	GAATCCAACTGGGGTTGCAA+AGG	-	chr1.3:28162863-28162882	None:intergenic	50.0%
	TCCAATTGCAGCCACAGGAA+AGG	+	chr1.3:28162735-28162754	MS.gene64276:CDS	50.0%
	TCCTTTCCTGTGGCTGCAAT+TGG	-	chr1.3:28162739-28162758	None:intergenic	50.0%
	TGACGGGAGTAGACAGATGA+TGG	+	chr1.3:28163164-28163183	MS.gene64276:CDS	50.0%
!	ATGTCGCGATTGTCGGTTGT+AGG	+	chr1.3:28163264-28163283	MS.gene64276:CDS	50.0%
!	ATTGTCGGTTGTAGGAGGGA+CGG	+	chr1.3:28163272-28163291	MS.gene64276:CDS	50.0%
!	GGGGGTGTATGTAGCAAGTT+CGG	+	chr1.3:28163140-28163159	MS.gene64276:CDS	50.0%
!!	ACGTTAGGACCTGATGGACT+TGG	+	chr1.3:28163033-28163052	MS.gene64276:CDS	50.0%
!!	GGACCTGATGGACTTGGATT+AGG	+	chr1.3:28163039-28163058	MS.gene64276:CDS	50.0%
	CCATCAGTAGCAACCTGTCC+AGG	-	chr1.3:28163348-28163367	None:intergenic	55.0%
	CCTGGACAGGTTGCTACTGA+TGG	+	chr1.3:28163345-28163364	MS.gene64276:CDS	55.0%
	GTACCCTTTGCAACCCCAGT+TGG	+	chr1.3:28162856-28162875	MS.gene64276:CDS	55.0%
	TCAGTAGCAACCTGTCCAGG+TGG	-	chr1.3:28163345-28163364	None:intergenic	55.0%
!	CGCGATTGTCGGTTGTAGGA+GGG	+	chr1.3:28163268-28163287	MS.gene64276:CDS	55.0%
!	TCGCGATTGTCGGTTGTAGG+AGG	+	chr1.3:28163267-28163286	MS.gene64276:CDS	55.0%
!	TTGTCGGTTGTAGGAGGGAC+GGG	+	chr1.3:28163273-28163292	MS.gene64276:CDS	55.0%
	TTGCCGAGCAAACCGGTCAC+TGG	-	chr1.3:28162820-28162839	None:intergenic	60.0%
!	TGTCGGTTGTAGGAGGGACG+GGG	+	chr1.3:28163274-28163293	MS.gene64276:CDS	60.0%
!!	CGACCAGTGACCGGTTTGCT+CGG	+	chr1.3:28162814-28162833	MS.gene64276:CDS	60.0%
	CCAACGGCTCGACCAGTGAC+CGG	+	chr1.3:28162805-28162824	MS.gene64276:CDS	65.0%
	CGGTCACTGGTCGAGCCGTT+GGG	-	chr1.3:28162807-28162826	None:intergenic	65.0%
	CCGGTCACTGGTCGAGCCGT+TGG	-	chr1.3:28162808-28162827	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	28162700	28163410	28162700	ID=MS.gene64276
chr1.3	mRNA	28162700	28163410	28162700	ID=MS.gene64276.t1;Parent=MS.gene64276
chr1.3	exon	28162700	28163410	28162700	ID=MS.gene64276.t1.exon1;Parent=MS.gene64276.t1
chr1.3	CDS	28162700	28163410	28162700	ID=cds.MS.gene64276.t1;Parent=MS.gene64276.t1

Gene Sequence

>MS.gene64276

ATGATGGCAATGGCAACAAACATAACAGCTATTGATCCAATTGCAGCCACAGGAAAGGAACCAATCATTGAGTTGTTCATGCATGACATTCTTGGAGGAAGTAACCCAACGGCTCGACCAGTGACCGGTTTGCTCGGCAACATATACAGTGGTCAAGTACCCTTTGCAACCCCAGTTGGATTCAACATTCCAAGTGATAGTATGCCAATCCCTAATGCAAATGGTGCTAATCCTACTGTTAATGGTGTTACTGGTATCCCATTAGGAACTGGTTTAGCTGGTACTTCCTTTGCACCAAACAACAACAATAACAATCAAAACAATGTTCAGTTAACGTTAGGACCTGATGGACTTGGATTAGGGTTTGGTACAATTACTGTTATTGATGATATATTAACATCTCAACCAGAGTTAGGTTCACAAATTGTTGGAAAGGGTCAGGGGGTGTATGTAGCAAGTTCGGCTGACGGGAGTAGACAGATGATGGTTTTTACAGCACTTTTTGAAGGAGGGGAGTATGGTGATAGTTTGAATTTTTATGGTTTGTATAAGATTGGAAGTACTATGTCGCGATTGTCGGTTGTAGGAGGGACGGGGAAGTTTAAGTATGCAAAAGGGTTTGCTGAACTGAGACCTCTTATTCCACCTGGACAGGTTGCTACTGATGGTGCTGAGACTTTGTTGAGGATTACTGTCCATTTGAAGTACTGA

Protein sequence

>MS.gene64276.t1

MMAMATNITAIDPIAATGKEPIIELFMHDILGGSNPTARPVTGLLGNIYSGQVPFATPVGFNIPSDSMPIPNANGANPTVNGVTGIPLGTGLAGTSFAPNNNNNNQNNVQLTLGPDGLGLGFGTITVIDDILTSQPELGSQIVGKGQGVYVASSADGSRQMMVFTALFEGGEYGDSLNFYGLYKIGSTMSRLSVVGGTGKFKYAKGFAELRPLIPPGQVATDGAETLLRITVHLKY