Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79893.t1 | RHN69172.1 | 98.6 | 1316 | 18 | 0 | 1 | 1316 | 1 | 1316 | 0.00E+00 | 2164.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79893.t1 | Q9SL02 | 62.4 | 1316 | 495 | 0 | 1 | 1316 | 1 | 1316 | 0.0e+00 | 1488.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79893.t1 | A0A396IUE8 | 98.6 | 1316 | 18 | 0 | 1 | 1316 | 1 | 1316 | 0.0e+00 | 2164.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene79893 | 0.863634 | 2.16E-64 | -1.69E-46 |
| MS.gene049418 | MS.gene79893 | 0.817437 | 3.30E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene79893 | 0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene050630 | MS.gene79893 | 0.819661 | 1.03E-52 | -1.69E-46 |
| MS.gene051021 | MS.gene79893 | 0.862539 | 4.72E-64 | -1.69E-46 |
| MS.gene051279 | MS.gene79893 | 0.830914 | 2.25E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene79893 | 0.817857 | 2.65E-52 | -1.69E-46 |
| MS.gene051671 | MS.gene79893 | 0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene79893 | 0.824082 | 9.79E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene79893 | 0.833745 | 4.47E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene79893 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene79893 | 0.824521 | 7.72E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene79893 | 0.868001 | 9.03E-66 | -1.69E-46 |
| MS.gene053226 | MS.gene79893 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene053536 | MS.gene79893 | 0.806651 | 7.42E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene79893 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene79893 | 0.874661 | 5.67E-68 | -1.69E-46 |
| MS.gene055465 | MS.gene79893 | 0.843361 | 1.47E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene79893 | 0.829043 | 6.42E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene79893 | 0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene79893 | 0.851187 | 1.04E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene79893 | -0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene056169 | MS.gene79893 | 0.843904 | 1.05E-58 | -1.69E-46 |
| MS.gene056228 | MS.gene79893 | 0.866543 | 2.64E-65 | -1.69E-46 |
| MS.gene056396 | MS.gene79893 | 0.810803 | 9.61E-51 | -1.69E-46 |
| MS.gene057082 | MS.gene79893 | 0.808297 | 3.32E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene79893 | 0.807523 | 4.85E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene79893 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene79893 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene79893 | 0.833637 | 4.76E-56 | -1.69E-46 |
| MS.gene059154 | MS.gene79893 | 0.845937 | 2.97E-59 | -1.69E-46 |
| MS.gene059625 | MS.gene79893 | 0.801793 | 7.61E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene79893 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene79893 | 0.808234 | 3.42E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79893.t1 | MTR_3g084300 | 99.012 | 1316 | 8 | 1 | 1 | 1316 | 1 | 1311 | 0.0 | 2653 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79893.t1 | AT2G31970 | 69.225 | 1316 | 405 | 0 | 1 | 1316 | 1 | 1316 | 0.0 | 1818 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATCCAAGCTTCAATCTT+TGG | 0.195557 | 3.1:-65423847 | MS.gene79893:CDS |
| GGATGAGCCAACCACAAATT+TGG | 0.220272 | 3.1:-65419582 | MS.gene79893:CDS |
| GCCTGTCCTGGGATAATTTC+AGG | 0.239184 | 3.1:+65421583 | None:intergenic |
| CCAGCTCTTCCTTGACTTGC+TGG | 0.240650 | 3.1:+65423257 | None:intergenic |
| CTTGTGTGATTTCCTTCTTC+AGG | 0.246655 | 3.1:+65431613 | None:intergenic |
| AAAATAAGAAGGGTGCTAAA+AGG | 0.255734 | 3.1:-65431657 | MS.gene79893:CDS |
| GGGTGTTTCGAAGGCCATTT+TGG | 0.258894 | 3.1:-65436903 | MS.gene79893:CDS |
| CTTATCTATGTCCTTGTATT+GGG | 0.266744 | 3.1:+65420927 | None:intergenic |
| GCGATTCCACACAATGAAAA+TGG | 0.287037 | 3.1:-65420087 | MS.gene79893:CDS |
| ATCTCTTATGAAGGGAGATT+TGG | 0.290588 | 3.1:-65431799 | MS.gene79893:CDS |
| TCTTCTAGAGTCCTCACTTC+TGG | 0.295451 | 3.1:+65422878 | None:intergenic |
| GCTTATCTATGTCCTTGTAT+TGG | 0.303062 | 3.1:+65420926 | None:intergenic |
| GAAGGATCTTGAAGATAAAA+AGG | 0.307260 | 3.1:-65433910 | MS.gene79893:intron |
| TCTGAAAGATGCGGCTTATA+CGG | 0.315101 | 3.1:-65436474 | MS.gene79893:intron |
| TTCATCAAGATGAAGCAAAT+TGG | 0.323797 | 3.1:-65436865 | MS.gene79893:CDS |
| GGATGGAAGCATTAAAGATT+TGG | 0.330227 | 3.1:-65434648 | MS.gene79893:CDS |
| CAGAACGAAGCACTCTATTT+AGG | 0.336357 | 3.1:-65434550 | MS.gene79893:CDS |
| GCAGCCAGACTTTCAGCATT+TGG | 0.345546 | 3.1:+65419554 | None:intergenic |
| AGGAAATCACACAAGCATTA+AGG | 0.346359 | 3.1:-65431605 | MS.gene79893:intron |
| TGACCACGAGTTTGAGAATC+TGG | 0.349229 | 3.1:-65422032 | MS.gene79893:CDS |
| TGACCAGCTTATCCAGCTTA+AGG | 0.354575 | 3.1:-65420896 | MS.gene79893:intron |
| GGGACCGACGATTAGGGTTA+AGG | 0.355058 | 3.1:+65437874 | None:intergenic |
| TCAGCACTGAAGGGTGGCTT+TGG | 0.357124 | 3.1:+65433984 | None:intergenic |
| AATCGATTCCAGAGCCTTGC+TGG | 0.358585 | 3.1:+65423823 | None:intergenic |
| GATGGATGAGCAGAGGAATA+TGG | 0.361544 | 3.1:-65422679 | MS.gene79893:CDS |
| CACCGTTGGGACCGACGATT+AGG | 0.363115 | 3.1:+65437867 | None:intergenic |
| CAGAGTCTGACTGAAGCCTT+TGG | 0.365798 | 3.1:-65422115 | MS.gene79893:CDS |
| TTATCTTTGCGCTTGGATAA+AGG | 0.366541 | 3.1:+65422091 | None:intergenic |
| TTCGCTTCACTGAAGGTTGC+GGG | 0.369897 | 3.1:-65437570 | MS.gene79893:intron |
| ATTGGAGCTCGTTGCATTGC+AGG | 0.370530 | 3.1:-65422849 | MS.gene79893:CDS |
| CTTAATCTGTCCCTTCGTTT+CGG | 0.374062 | 3.1:+65437542 | None:intergenic |
| AAAGACTTACAAGCTGAAAC+TGG | 0.374719 | 3.1:-65436510 | MS.gene79893:CDS |
| TACCCGATCCTACAGTTATA+AGG | 0.377263 | 3.1:-65419967 | MS.gene79893:intron |
| ACTAACATGACATATCCTTT+TGG | 0.390538 | 3.1:+65426841 | None:intergenic |
| AGACGAGAGAGAAAGAGAAT+TGG | 0.393062 | 3.1:-65432080 | MS.gene79893:intron |
| GGACAGGCAGAGGCTTCTTT+CGG | 0.397159 | 3.1:-65421568 | MS.gene79893:CDS |
| CATCATACGGTTGGCTTTAG+CGG | 0.398104 | 3.1:-65419639 | MS.gene79893:CDS |
| CTGGGATAATTTCAGGTGTT+CGG | 0.399452 | 3.1:+65421590 | None:intergenic |
| TAAAACATTGAAACATTTGC+TGG | 0.399701 | 3.1:-65434603 | MS.gene79893:CDS |
| GGACCGACGATTAGGGTTAA+GGG | 0.401101 | 3.1:+65437875 | None:intergenic |
| TTCTTTACAGACAACTGAAA+TGG | 0.401699 | 3.1:-65420785 | MS.gene79893:intron |
| AAAGAAGCCTCTGCCTGTCC+TGG | 0.402949 | 3.1:+65421571 | None:intergenic |
| GTGATGACGTTCTTGTTCTC+CGG | 0.413708 | 3.1:+65437908 | None:intergenic |
| GAAACATTTGCTGGAGCTAA+AGG | 0.414723 | 3.1:-65434594 | MS.gene79893:CDS |
| TTGCTGTGAGCGTTCTTTCT+CGG | 0.416564 | 3.1:-65423554 | MS.gene79893:CDS |
| GATAATATCTCTCCGCATGC+TGG | 0.418577 | 3.1:+65419346 | None:intergenic |
| TTTGCAAAGTTTGAATTTCG+AGG | 0.419600 | 3.1:+65422942 | None:intergenic |
| AAACATTTGCTGGAGCTAAA+GGG | 0.420145 | 3.1:-65434593 | MS.gene79893:CDS |
| AATATGGATACTGATATATC+AGG | 0.422969 | 3.1:-65422663 | MS.gene79893:CDS |
| TCGAGAGATTCCTGCGCTCA+TGG | 0.424086 | 3.1:-65436924 | MS.gene79893:CDS |
| CCTTCTCATCAAGATCAACT+TGG | 0.427850 | 3.1:+65422529 | None:intergenic |
| AGTTGGAGAAGCTTCGTATA+TGG | 0.428659 | 3.1:-65423336 | MS.gene79893:CDS |
| GATTCCATCAACTCCTCATC+AGG | 0.429278 | 3.1:+65434317 | None:intergenic |
| AATCGTGTAAAATCAAGGTT+GGG | 0.429532 | 3.1:-65433942 | MS.gene79893:CDS |
| AGACCATCGATAACTCCATC+TGG | 0.430893 | 3.1:-65434193 | MS.gene79893:CDS |
| CGGTCCAAATGCTGAAAGTC+TGG | 0.431082 | 3.1:-65419558 | MS.gene79893:CDS |
| ATCTATAATTTCCTGCATCC+TGG | 0.432798 | 3.1:+65421782 | None:intergenic |
| TTCCTTGTTATGCAGGATCA+TGG | 0.434231 | 3.1:-65419448 | MS.gene79893:intron |
| TACTGAGTTGACGAATTTGA+TGG | 0.440214 | 3.1:-65422697 | MS.gene79893:CDS |
| GACTCTAGAAGAAATTCAAT+TGG | 0.441635 | 3.1:-65422867 | MS.gene79893:CDS |
| TACCTTCGTGACAGTTAAAC+AGG | 0.442230 | 3.1:-65421014 | MS.gene79893:intron |
| TCTTTGGACCAGCAAGGCTC+TGG | 0.443969 | 3.1:-65423831 | MS.gene79893:CDS |
| GACAATCCCCAATGCTGAAA+AGG | 0.445333 | 3.1:-65423284 | MS.gene79893:CDS |
| TTAGAAAGTGAGCTTGGTTG+TGG | 0.445491 | 3.1:-65422905 | MS.gene79893:CDS |
| TGTTCTCCGGGTCGAAACTT+CGG | 0.445761 | 3.1:+65437921 | None:intergenic |
| GAGGATTTAGAAAGTGAGCT+TGG | 0.448238 | 3.1:-65422911 | MS.gene79893:CDS |
| CTGTGACCAGACCTAGCATT+AGG | 0.448470 | 3.1:+65437712 | None:intergenic |
| TGATTACATCATCAAGTGCC+TGG | 0.450118 | 3.1:+65423224 | None:intergenic |
| AGAACCTGATGAGGAGTTGA+TGG | 0.454055 | 3.1:-65434321 | MS.gene79893:CDS |
| TAGGGTTAAGGGTTTGAAGA+AGG | 0.454499 | 3.1:+65437886 | None:intergenic |
| ATTTGGACCGTCCAAATTTG+TGG | 0.456117 | 3.1:+65419571 | None:intergenic |
| AAATAAGAAGGGTGCTAAAA+GGG | 0.457318 | 3.1:-65431656 | MS.gene79893:CDS |
| TGCGCTCATGGGTGTTTCGA+AGG | 0.462259 | 3.1:-65436912 | MS.gene79893:CDS |
| CTGGTCCAAAGATTGAAGCT+TGG | 0.467024 | 3.1:+65423842 | None:intergenic |
| GCACAGTATAATCGAATCTC+AGG | 0.468434 | 3.1:-65419197 | MS.gene79893:CDS |
| AACTTCTTCTTTAACGTGGA+AGG | 0.469089 | 3.1:+65436830 | None:intergenic |
| GACCTTGAGGAGGAGTTTGA+AGG | 0.472709 | 3.1:-65434506 | MS.gene79893:intron |
| GAAGAAAATATGTTGAAGAT+TGG | 0.472939 | 3.1:-65421633 | MS.gene79893:CDS |
| CAAAGCATCCTCAGCACTGA+AGG | 0.480099 | 3.1:+65433974 | None:intergenic |
| TAACTTATCTAAACACCAAA+AGG | 0.480117 | 3.1:-65426856 | MS.gene79893:CDS |
| ATGAGAGGAAGATGTAGTGC+AGG | 0.481825 | 3.1:-65419818 | MS.gene79893:CDS |
| TGCTTAAAGCTTTCTTGCAC+CGG | 0.481962 | 3.1:-65437745 | MS.gene79893:CDS |
| ATACCTTAAGCTGGATAAGC+TGG | 0.485539 | 3.1:+65420893 | None:intergenic |
| ATGCTTGCAGCAAATTCGTC+TGG | 0.485767 | 3.1:-65431970 | MS.gene79893:intron |
| AGGGAGGATTCCTTCTGATA+AGG | 0.485776 | 3.1:-65431637 | MS.gene79893:CDS |
| ACTTAAATGCAAATGAAAGT+TGG | 0.485931 | 3.1:-65432310 | MS.gene79893:CDS |
| TGATGACGTTCTTGTTCTCC+GGG | 0.487340 | 3.1:+65437909 | None:intergenic |
| GGATCGGGTACCACCACCTT+CGG | 0.488070 | 3.1:+65419980 | None:intergenic |
| CGAGAGATTCCTGCGCTCAT+GGG | 0.488137 | 3.1:-65436923 | MS.gene79893:CDS |
| GCTCTTGCAACCCTTTCAAA+AGG | 0.489126 | 3.1:+65423592 | None:intergenic |
| ACCGTTGGGACCGACGATTA+GGG | 0.491248 | 3.1:+65437868 | None:intergenic |
| AGAAAAGAGATGTACAGAAA+AGG | 0.495584 | 3.1:-65423770 | MS.gene79893:intron |
| ATCGTCGGTCCCAACGGTGC+CGG | 0.495884 | 3.1:-65437863 | MS.gene79893:CDS |
| TCGATGGTCTTCTTGAGGAC+AGG | 0.496469 | 3.1:+65434206 | None:intergenic |
| CAATTGTGGAATTCTTGCAT+TGG | 0.496655 | 3.1:-65419603 | MS.gene79893:CDS |
| CTCCGGTTCAAAACCGCTGC+CGG | 0.497097 | 3.1:-65437519 | MS.gene79893:CDS |
| TAATCGTGTAAAATCAAGGT+TGG | 0.498249 | 3.1:-65433943 | MS.gene79893:CDS |
| AGACAGGTTGAAGGAGCTGC+AGG | 0.503868 | 3.1:-65421847 | MS.gene79893:CDS |
| ACTTCTTCTTTAACGTGGAA+GGG | 0.504784 | 3.1:+65436831 | None:intergenic |
| GTAGAGACGTGGTTTGCATA+AGG | 0.505155 | 3.1:-65437497 | MS.gene79893:CDS |
| AGTGATACCTCGCCGGTATG+AGG | 0.506912 | 3.1:+65437402 | None:intergenic |
| AAAGAAAGGAGACAGGTTGA+AGG | 0.507362 | 3.1:-65421856 | MS.gene79893:CDS |
| TCACTAATCGTGTAAAATCA+AGG | 0.509390 | 3.1:-65433947 | MS.gene79893:CDS |
| TTCTTCAGGTCCTTATCAGA+AGG | 0.509999 | 3.1:+65431627 | None:intergenic |
| TACAATGGCTACTGATTCAA+AGG | 0.511814 | 3.1:-65431835 | MS.gene79893:CDS |
| CCAGCAAGTCAAGGAAGAGC+TGG | 0.515756 | 3.1:-65423257 | MS.gene79893:CDS |
| TTACCTCCTAATGCTAGGTC+TGG | 0.517145 | 3.1:-65437718 | MS.gene79893:CDS |
| GGACCGTCCAAATTTGTGGT+TGG | 0.519912 | 3.1:+65419575 | None:intergenic |
| CACCACATTATACCTTAAGC+TGG | 0.521804 | 3.1:+65420884 | None:intergenic |
| TTGTGGCAACAGACTTATAG+AGG | 0.523323 | 3.1:-65420038 | MS.gene79893:CDS |
| ACCCTAATCGTCGGTCCCAA+CGG | 0.524311 | 3.1:-65437869 | MS.gene79893:CDS |
| AAACCTTATAACTGTAGGAT+CGG | 0.524478 | 3.1:+65419964 | None:intergenic |
| TAGCTTGCTGATCTCCCAGA+TGG | 0.524768 | 3.1:+65434178 | None:intergenic |
| ACAAACACAAATAAGCAAGT+TGG | 0.531132 | 3.1:-65434261 | MS.gene79893:CDS |
| CATTCTGATTCCGAAGGTGG+TGG | 0.531974 | 3.1:-65419990 | MS.gene79893:CDS |
| AAGTTGTGAAACCAGGATGC+AGG | 0.533607 | 3.1:-65421793 | MS.gene79893:CDS |
| GATCAGATACAGCAGTTGGA+TGG | 0.534765 | 3.1:-65434665 | MS.gene79893:CDS |
| ATAATCAGAGTCTGCACTTG+AGG | 0.534890 | 3.1:+65423363 | None:intergenic |
| GTGCATTGTAGTATCTGTCC+AGG | 0.535052 | 3.1:+65420752 | None:intergenic |
| TTATAGATGAACTAGACAAA+AGG | 0.537241 | 3.1:-65421767 | MS.gene79893:CDS |
| AAGATGTAGTGCAGGACAGA+AGG | 0.540905 | 3.1:-65419810 | MS.gene79893:intron |
| AACCTTATAACTGTAGGATC+GGG | 0.541554 | 3.1:+65419965 | None:intergenic |
| TTCGAAACACCCATGAGCGC+AGG | 0.542108 | 3.1:+65436914 | None:intergenic |
| TTCTGATAAGGACCTGAAGA+AGG | 0.542753 | 3.1:-65431625 | MS.gene79893:CDS |
| TAGCTATAGATGTGCTGACA+TGG | 0.543605 | 3.1:-65436948 | MS.gene79893:CDS |
| TCTTAAGCAGGCCCAATACA+AGG | 0.544643 | 3.1:-65420938 | MS.gene79893:CDS |
| TGACAAGGAGTTGGTTGAGC+CGG | 0.545549 | 3.1:-65422999 | MS.gene79893:CDS |
| GAAAGTGAGCTTGGTTGTGG+AGG | 0.546111 | 3.1:-65422902 | MS.gene79893:CDS |
| AGAAAGAACGCTCACAGCAA+GGG | 0.547047 | 3.1:+65423557 | None:intergenic |
| AAAAGATCAGATACAGCAGT+TGG | 0.547994 | 3.1:-65434669 | MS.gene79893:CDS |
| TATGCAAACCACGTCTCTAC+CGG | 0.549096 | 3.1:+65437500 | None:intergenic |
| GGCATCTCTCATCATACGGT+TGG | 0.549446 | 3.1:-65419648 | MS.gene79893:CDS |
| ACATTTGAAAATTCTTGCTG+TGG | 0.549787 | 3.1:-65423389 | MS.gene79893:CDS |
| AGGTACTCTAACTCAAAGAA+AGG | 0.549818 | 3.1:-65421870 | MS.gene79893:CDS |
| ATTCATTCTGATTCCGAAGG+TGG | 0.550830 | 3.1:-65419993 | MS.gene79893:CDS |
| ATGCAAGAATTCCACAATTG+AGG | 0.551543 | 3.1:+65419606 | None:intergenic |
| ACACTGAACTCAAGATGGCA+TGG | 0.552021 | 3.1:-65432340 | MS.gene79893:CDS |
| AAATAAGATTGATCTTAAGC+AGG | 0.552984 | 3.1:-65420950 | MS.gene79893:CDS |
| TACTGGCATCTCTCATCATA+CGG | 0.554024 | 3.1:-65419652 | MS.gene79893:CDS |
| TTGGAGCTCGTTGCATTGCA+GGG | 0.555173 | 3.1:-65422848 | MS.gene79893:CDS |
| ATCGTGTAAAATCAAGGTTG+GGG | 0.557025 | 3.1:-65433941 | MS.gene79893:CDS |
| AAGAAGCCTCTGCCTGTCCT+GGG | 0.558476 | 3.1:+65421572 | None:intergenic |
| ACCTGAAATTATCCCAGGAC+AGG | 0.558805 | 3.1:-65421584 | MS.gene79893:CDS |
| AACCACGTCTCTACCGGCAG+CGG | 0.559352 | 3.1:+65437506 | None:intergenic |
| GCGCTTGGATAAAGGTCCAA+AGG | 0.563340 | 3.1:+65422099 | None:intergenic |
| AAATAACACTGAACTCAAGA+TGG | 0.563459 | 3.1:-65432345 | MS.gene79893:CDS |
| CATGGAGGACAGGAAAGGCC+AGG | 0.565053 | 3.1:-65419430 | MS.gene79893:CDS |
| AGCAAATATAACATTGCAGA+TGG | 0.567660 | 3.1:-65423634 | MS.gene79893:CDS |
| AACATTTGCTGGAGCTAAAG+GGG | 0.569155 | 3.1:-65434592 | MS.gene79893:CDS |
| AGTATTCATTCTGATTCCGA+AGG | 0.570105 | 3.1:-65419996 | MS.gene79893:CDS |
| TATGCAGGATCATGGAGGAC+AGG | 0.570216 | 3.1:-65419440 | MS.gene79893:intron |
| GCAACAGACTTATAGAGGAC+AGG | 0.572063 | 3.1:-65420033 | MS.gene79893:CDS |
| CAGGCAGAGGCTTCTTTCGG+AGG | 0.572534 | 3.1:-65421565 | MS.gene79893:intron |
| CAAACTATTAATCCTCATAC+CGG | 0.573646 | 3.1:-65437414 | MS.gene79893:CDS |
| AATTATCCCAGGACAGGCAG+AGG | 0.573915 | 3.1:-65421578 | MS.gene79893:CDS |
| GATTACATCATCAAGTGCCT+GGG | 0.574783 | 3.1:+65423225 | None:intergenic |
| CGAAAATAAAGCCCTTAATG+TGG | 0.575676 | 3.1:-65431892 | MS.gene79893:CDS |
| TGTTCAACATATTTCACCAC+CGG | 0.577672 | 3.1:+65422980 | None:intergenic |
| CAGATACACAAAGGCACTTG+AGG | 0.579073 | 3.1:-65436570 | MS.gene79893:CDS |
| AATCACGGTTGCAGAATGCA+AGG | 0.579439 | 3.1:-65422635 | MS.gene79893:CDS |
| GTGAGTTACCTCCTAATGCT+AGG | 0.580225 | 3.1:-65437723 | MS.gene79893:CDS |
| GTCTGGCTGCGGCTATCCTG+AGG | 0.580685 | 3.1:-65419541 | MS.gene79893:intron |
| AAGAAAAGCAACAATGAGTA+CGG | 0.580808 | 3.1:-65437969 | None:intergenic |
| CAACCAGATTCTCAAACTCG+TGG | 0.581086 | 3.1:+65422029 | None:intergenic |
| AGAATATGTTAAACTTAGCA+AGG | 0.582751 | 3.1:-65423308 | MS.gene79893:CDS |
| GAGAAAGAACGCTCACAGCA+AGG | 0.583398 | 3.1:+65423556 | None:intergenic |
| CTTCAATCTTTGGACCAGCA+AGG | 0.583682 | 3.1:-65423837 | MS.gene79893:CDS |
| TGTCAGCACATCTATAGCTA+AGG | 0.585988 | 3.1:+65436951 | None:intergenic |
| TGCAGCAAATTCGTCTGGAG+GGG | 0.586209 | 3.1:-65431965 | MS.gene79893:intron |
| TAAGAAGGGTGCTAAAAGGG+AGG | 0.586867 | 3.1:-65431653 | MS.gene79893:CDS |
| AACTGCAAAGTTGTGAAACC+AGG | 0.589548 | 3.1:-65421800 | MS.gene79893:CDS |
| TTGCAGCAAATTCGTCTGGA+GGG | 0.589663 | 3.1:-65431966 | MS.gene79893:intron |
| TTCAAACTCCTCCTCAAGGT+CGG | 0.589692 | 3.1:+65434508 | None:intergenic |
| CACTGAACTCAAGATGGCAT+GGG | 0.592682 | 3.1:-65432339 | MS.gene79893:CDS |
| CTAACTCAAAGAAAGGAGAC+AGG | 0.593565 | 3.1:-65421863 | MS.gene79893:CDS |
| AACGTGGAAGGGTCTTGAAG+TGG | 0.594774 | 3.1:+65436842 | None:intergenic |
| CGAACACCTGAAATTATCCC+AGG | 0.595153 | 3.1:-65421589 | MS.gene79893:CDS |
| ATGGCAAACCTTATAACTGT+AGG | 0.597534 | 3.1:+65419959 | None:intergenic |
| CTCCCAGATGGAGTTATCGA+TGG | 0.597692 | 3.1:+65434190 | None:intergenic |
| GACCATCGATAACTCCATCT+GGG | 0.597732 | 3.1:-65434192 | MS.gene79893:CDS |
| CGAATTTGATGGATGAGCAG+AGG | 0.597782 | 3.1:-65422686 | MS.gene79893:CDS |
| GGACGCTAAAATTGATCATG+TGG | 0.597893 | 3.1:-65434627 | MS.gene79893:CDS |
| AGTGAAGACTGACAAGGAGT+TGG | 0.598043 | 3.1:-65423008 | MS.gene79893:CDS |
| GTGGACAAGATGCTGATCAA+AGG | 0.598421 | 3.1:-65437947 | MS.gene79893:CDS |
| CTTCTCATCAAGATCAACTT+GGG | 0.600285 | 3.1:+65422530 | None:intergenic |
| CCAAGTTGATCTTGATGAGA+AGG | 0.601866 | 3.1:-65422529 | MS.gene79893:intron |
| CAAGGAGTTGGTTGAGCCGG+TGG | 0.602126 | 3.1:-65422996 | MS.gene79893:CDS |
| GATTGGTCAGCGCCAGCATG+CGG | 0.603404 | 3.1:-65419358 | MS.gene79893:CDS |
| AGACTCTGATTATCAGCAGT+TGG | 0.605534 | 3.1:-65423353 | MS.gene79893:CDS |
| AGAGCTGGATCACAAATCCC+AGG | 0.606303 | 3.1:-65423242 | MS.gene79893:CDS |
| AGTTATCGATGGTCTTCTTG+AGG | 0.606694 | 3.1:+65434201 | None:intergenic |
| GCATCCTCAGCACTGAAGGG+TGG | 0.608278 | 3.1:+65433978 | None:intergenic |
| TTAATCACAGCAAAGAGGGA+AGG | 0.609678 | 3.1:-65423428 | MS.gene79893:intron |
| ATCAAACTTCTTCTTTAACG+TGG | 0.610212 | 3.1:+65436826 | None:intergenic |
| ACAAAATTATAAGAGAATTG+TGG | 0.610414 | 3.1:-65420055 | MS.gene79893:CDS |
| AACTTTGCAAAAGAAAGTTG+AGG | 0.611565 | 3.1:-65422930 | MS.gene79893:CDS |
| ATACAGGTTCTCATGCAGAC+TGG | 0.612239 | 3.1:-65419857 | MS.gene79893:intron |
| TCTTCAAACTCTGAAAGATG+CGG | 0.614509 | 3.1:-65436483 | MS.gene79893:CDS |
| CGAAGGGACAGATTAAGCTC+CGG | 0.615621 | 3.1:-65437536 | MS.gene79893:CDS |
| TGCAGGCTCACATGTCTCTG+AGG | 0.618854 | 3.1:-65434064 | MS.gene79893:intron |
| ATATTTATTAGAACCTGATG+AGG | 0.621136 | 3.1:-65434330 | MS.gene79893:intron |
| AAAGGAACTCCAGCAAGTCA+AGG | 0.621494 | 3.1:-65423266 | MS.gene79893:CDS |
| CAATCGAGAGATGCTTACAA+TGG | 0.621502 | 3.1:-65431850 | MS.gene79893:CDS |
| GATGCTGAGTTAGAAATGAG+AGG | 0.622381 | 3.1:-65419833 | MS.gene79893:CDS |
| CTTGCAGCAAATTCGTCTGG+AGG | 0.623052 | 3.1:-65431967 | MS.gene79893:intron |
| TGAAATGGCAAACAAAGACC+TGG | 0.623587 | 3.1:-65420770 | MS.gene79893:CDS |
| CACCTTCAAACTCCTCCTCA+AGG | 0.624156 | 3.1:+65434504 | None:intergenic |
| AACCGCTGCCGGTAGAGACG+TGG | 0.628955 | 3.1:-65437508 | MS.gene79893:CDS |
| GAAGCAATATTCCGACCTTG+AGG | 0.629350 | 3.1:-65434519 | MS.gene79893:CDS |
| ATATATCAGGTATTCAATCA+CGG | 0.630373 | 3.1:-65422650 | MS.gene79893:CDS |
| TGCGGGAGAAACCGAAACGA+AGG | 0.631254 | 3.1:-65437553 | MS.gene79893:CDS |
| TAAGTATCGAGAAGCTGACA+AGG | 0.632404 | 3.1:-65426919 | MS.gene79893:CDS |
| AAAGCCACCCTTCAGTGCTG+AGG | 0.638736 | 3.1:-65433982 | MS.gene79893:CDS |
| GCAATATTCCGACCTTGAGG+AGG | 0.639352 | 3.1:-65434516 | MS.gene79893:CDS |
| GAGCCAACCACAAATTTGGA+CGG | 0.640463 | 3.1:-65419578 | MS.gene79893:CDS |
| AGGATCATGGAGGACAGGAA+AGG | 0.641225 | 3.1:-65419435 | MS.gene79893:CDS |
| AAATGCTGAAAGTCTGGCTG+CGG | 0.641502 | 3.1:-65419552 | MS.gene79893:CDS |
| ATCACGGTTGCAGAATGCAA+GGG | 0.643434 | 3.1:-65422634 | MS.gene79893:CDS |
| CAGCTTCATTCACGACCCCA+AGG | 0.645705 | 3.1:-65437692 | MS.gene79893:intron |
| TGACAGTTAAACAGGTGCAA+AGG | 0.647336 | 3.1:-65421006 | MS.gene79893:intron |
| TGACCAGACCTAGCATTAGG+AGG | 0.650160 | 3.1:+65437715 | None:intergenic |
| AAAGCATCCTCAGCACTGAA+GGG | 0.652918 | 3.1:+65433975 | None:intergenic |
| GTTGTGGAGGACCAGAAGTG+AGG | 0.655223 | 3.1:-65422889 | MS.gene79893:CDS |
| TTAGAAGAGTGATACCTCGC+CGG | 0.661706 | 3.1:+65437395 | None:intergenic |
| ACAAACTAAGAGAGAGCACA+AGG | 0.666140 | 3.1:-65432267 | MS.gene79893:intron |
| CTTGTTATGCAGGATCATGG+AGG | 0.673703 | 3.1:-65419445 | MS.gene79893:intron |
| AAACCCTTAACCCTAATCGT+CGG | 0.673783 | 3.1:-65437878 | MS.gene79893:CDS |
| TCGTGTAAAATCAAGGTTGG+GGG | 0.676575 | 3.1:-65433940 | MS.gene79893:CDS |
| AGCATTAGGAGGTAACTCAC+CGG | 0.679949 | 3.1:+65437726 | None:intergenic |
| AGGCATCCGAAGTTTCGACC+CGG | 0.680747 | 3.1:-65437927 | MS.gene79893:CDS |
| GCGGGAGAAACCGAAACGAA+GGG | 0.681553 | 3.1:-65437552 | MS.gene79893:CDS |
| GGTTATAAAGAAACTTCACA+AGG | 0.683172 | 3.1:-65436549 | MS.gene79893:CDS |
| AGCTCAAGTGAAGACTGACA+AGG | 0.685303 | 3.1:-65423014 | MS.gene79893:CDS |
| AAAAGCAACAATGAGTACGG+TGG | 0.702967 | 3.1:-65437966 | None:intergenic |
| TGTACTGAGCAGATACACAA+AGG | 0.715032 | 3.1:-65436579 | MS.gene79893:intron |
| GCTTCGGGAAAACATCACAC+AGG | 0.717999 | 3.1:-65434714 | MS.gene79893:CDS |
| TATTAATCCTCATACCGGCG+AGG | 0.719923 | 3.1:-65437409 | MS.gene79893:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 65419183 | 65437978 | 65419183 | ID=MS.gene79893 |
| chr3.1 | mRNA | 65419183 | 65437978 | 65419183 | ID=MS.gene79893.t1;Parent=MS.gene79893 |
| chr3.1 | exon | 65437856 | 65437978 | 65437856 | ID=MS.gene79893.t1.exon1;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65437856 | 65437978 | 65437856 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65437693 | 65437779 | 65437693 | ID=MS.gene79893.t1.exon2;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65437693 | 65437779 | 65437693 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65437410 | 65437577 | 65437410 | ID=MS.gene79893.t1.exon3;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65437410 | 65437577 | 65437410 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65436806 | 65436981 | 65436806 | ID=MS.gene79893.t1.exon4;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65436806 | 65436981 | 65436806 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65436475 | 65436589 | 65436475 | ID=MS.gene79893.t1.exon5;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65436475 | 65436589 | 65436475 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65434507 | 65434735 | 65434507 | ID=MS.gene79893.t1.exon6;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65434507 | 65434735 | 65434507 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65434163 | 65434341 | 65434163 | ID=MS.gene79893.t1.exon7;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65434163 | 65434341 | 65434163 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65433911 | 65434081 | 65433911 | ID=MS.gene79893.t1.exon8;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65433911 | 65434081 | 65433911 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65432268 | 65432372 | 65432268 | ID=MS.gene79893.t1.exon9;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65432268 | 65432372 | 65432268 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65432081 | 65432188 | 65432081 | ID=MS.gene79893.t1.exon10;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65432081 | 65432188 | 65432081 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65431771 | 65431982 | 65431771 | ID=MS.gene79893.t1.exon11;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65431771 | 65431982 | 65431771 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65431606 | 65431698 | 65431606 | ID=MS.gene79893.t1.exon12;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65431606 | 65431698 | 65431606 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65426847 | 65426974 | 65426847 | ID=MS.gene79893.t1.exon13;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65426847 | 65426974 | 65426847 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65423771 | 65423885 | 65423771 | ID=MS.gene79893.t1.exon14;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65423771 | 65423885 | 65423771 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65423525 | 65423654 | 65423525 | ID=MS.gene79893.t1.exon15;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65423525 | 65423654 | 65423525 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65423231 | 65423440 | 65423231 | ID=MS.gene79893.t1.exon16;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65423231 | 65423440 | 65423231 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65422842 | 65423050 | 65422842 | ID=MS.gene79893.t1.exon17;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65422842 | 65423050 | 65422842 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65422530 | 65422731 | 65422530 | ID=MS.gene79893.t1.exon18;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65422530 | 65422731 | 65422530 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65421965 | 65422134 | 65421965 | ID=MS.gene79893.t1.exon19;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65421965 | 65422134 | 65421965 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65421566 | 65421890 | 65421566 | ID=MS.gene79893.t1.exon20;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65421566 | 65421890 | 65421566 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65420897 | 65421022 | 65420897 | ID=MS.gene79893.t1.exon21;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65420897 | 65421022 | 65420897 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65420745 | 65420797 | 65420745 | ID=MS.gene79893.t1.exon22;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65420745 | 65420797 | 65420745 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65419968 | 65420118 | 65419968 | ID=MS.gene79893.t1.exon23;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65419968 | 65420118 | 65419968 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65419811 | 65419873 | 65419811 | ID=MS.gene79893.t1.exon24;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65419811 | 65419873 | 65419811 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65419542 | 65419675 | 65419542 | ID=MS.gene79893.t1.exon25;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65419542 | 65419675 | 65419542 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65419327 | 65419455 | 65419327 | ID=MS.gene79893.t1.exon26;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65419327 | 65419455 | 65419327 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| chr3.1 | exon | 65419183 | 65419222 | 65419183 | ID=MS.gene79893.t1.exon27;Parent=MS.gene79893.t1 |
| chr3.1 | CDS | 65419183 | 65419222 | 65419183 | ID=cds.MS.gene79893.t1;Parent=MS.gene79893.t1 |
| Gene Sequence |
| Protein sequence |