Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045358.t1 | RHN69172.1 | 98.6 | 1316 | 18 | 0 | 1 | 1316 | 1 | 1316 | 0.00E+00 | 2168.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045358.t1 | Q9SL02 | 62.5 | 1316 | 494 | 0 | 1 | 1316 | 1 | 1316 | 0.0e+00 | 1489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045358.t1 | A0A396IUE8 | 98.6 | 1316 | 18 | 0 | 1 | 1316 | 1 | 1316 | 0.0e+00 | 2168.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045358.t1 | MTR_3g084300 | 99.088 | 1316 | 7 | 1 | 1 | 1316 | 1 | 1311 | 0.0 | 2657 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045358.t1 | AT2G31970 | 69.149 | 1316 | 406 | 0 | 1 | 1316 | 1 | 1316 | 0.0 | 1818 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATCCAAGCTTCAATCTT+TGG | 0.195557 | 3.4:+78952196 | MS.gene045358:CDS |
| GGATGAGCCAACCACAAATT+TGG | 0.220272 | 3.4:+78956463 | MS.gene045358:CDS |
| GCCTGTCCTGGGATAATTTC+TGG | 0.229131 | 3.4:-78954462 | None:intergenic |
| CCAGCTCTTCCTTGACTTGC+TGG | 0.240650 | 3.4:-78952784 | None:intergenic |
| CTTGTGTGATTTCCTTCTTC+AGG | 0.246655 | 3.4:-78948042 | None:intergenic |
| AAAATAAGAAGGGTGCTAAA+AGG | 0.255734 | 3.4:+78947998 | MS.gene045358:CDS |
| GGGTGTTTCGAAGGCCATTT+TGG | 0.258894 | 3.4:+78943432 | MS.gene045358:CDS |
| CTTATCTATGTCCTTGTATT+GGG | 0.266744 | 3.4:-78955118 | None:intergenic |
| GCGATTCCACACAATGAAAA+TGG | 0.287037 | 3.4:+78955958 | MS.gene045358:CDS |
| ATCTCTTATGAAGGGAGATT+TGG | 0.290588 | 3.4:+78947856 | MS.gene045358:CDS |
| TCTTCTAGAGTCCTCACTTC+TGG | 0.295451 | 3.4:-78953163 | None:intergenic |
| GCTTATCTATGTCCTTGTAT+TGG | 0.303062 | 3.4:-78955119 | None:intergenic |
| GAAGGATCTTGAAGATAAAA+AGG | 0.307260 | 3.4:+78945755 | MS.gene045358:CDS |
| TTCATCAAGATGAAGCAAAT+TGG | 0.323797 | 3.4:+78943470 | MS.gene045358:CDS |
| TCTGAAAGATGCTGCTTATA+CGG | 0.329428 | 3.4:+78943861 | MS.gene045358:CDS |
| GGATGGAAGCATTAAAGATT+TGG | 0.330227 | 3.4:+78945017 | MS.gene045358:CDS |
| CAGAACGAAGCACTCTATTT+AGG | 0.336357 | 3.4:+78945115 | MS.gene045358:CDS |
| GCAGCCAGACTTTCAGCATT+TGG | 0.345546 | 3.4:-78956491 | None:intergenic |
| AGGAAATCACACAAGCATTA+AGG | 0.346359 | 3.4:+78948050 | MS.gene045358:CDS |
| TGACCACGAGTTTGAGAATC+TGG | 0.349229 | 3.4:+78954014 | MS.gene045358:CDS |
| AATCAATTCCAGAGCCTTGC+TGG | 0.351593 | 3.4:-78952220 | None:intergenic |
| TGACCAGCTTATCCAGCTTA+AGG | 0.354575 | 3.4:+78955149 | MS.gene045358:CDS |
| GGGACCGACGATTAGGGTTA+AGG | 0.355058 | 3.4:-78942448 | None:intergenic |
| TCAGCACTGAAGGGTGGCTT+TGG | 0.357124 | 3.4:-78945681 | None:intergenic |
| GATGGATGAGCAGAGGAATA+TGG | 0.361544 | 3.4:+78953367 | MS.gene045358:CDS |
| CACCGTTGGGACCGACGATT+AGG | 0.363115 | 3.4:-78942455 | None:intergenic |
| CAGAGTCTGACTGAAGCCTT+TGG | 0.365798 | 3.4:+78953931 | MS.gene045358:intron |
| TTATCTTTGCGCTTGGATAA+AGG | 0.366541 | 3.4:-78953955 | None:intergenic |
| TTCGCTTCACTGAAGGTTGC+GGG | 0.369897 | 3.4:+78942790 | MS.gene045358:intron |
| ATTGGAGCTCGTTGCATTGC+AGG | 0.370530 | 3.4:+78953192 | MS.gene045358:CDS |
| CTTAATCTGTCCCTTCGTTT+CGG | 0.374062 | 3.4:-78942818 | None:intergenic |
| AAAGACTTACAAGCTGAAAC+TGG | 0.374719 | 3.4:+78943825 | MS.gene045358:CDS |
| TACCCGATCCTACAGTTATA+AGG | 0.377263 | 3.4:+78956078 | MS.gene045358:CDS |
| CTGGGATAATTTCTGGTGTT+CGG | 0.387310 | 3.4:-78954455 | None:intergenic |
| CAAACTATTAATCCTCATTC+CGG | 0.387489 | 3.4:+78942946 | MS.gene045358:CDS |
| AGACGAGAGAGAAAGAGAAT+TGG | 0.393062 | 3.4:+78947575 | MS.gene045358:CDS |
| GGACAGGCAGAGGCTTCTTT+CGG | 0.397159 | 3.4:+78954477 | MS.gene045358:CDS |
| CATCATACGGTTGGCTTTAG+CGG | 0.398104 | 3.4:+78956406 | MS.gene045358:CDS |
| TAAAACATTGAAACATTTGC+TGG | 0.399701 | 3.4:+78945062 | MS.gene045358:CDS |
| GGACCGACGATTAGGGTTAA+GGG | 0.401101 | 3.4:-78942447 | None:intergenic |
| TTCTTTACAGACAACTGAAA+TGG | 0.401699 | 3.4:+78955260 | MS.gene045358:intron |
| AAAGAAGCCTCTGCCTGTCC+TGG | 0.402949 | 3.4:-78954474 | None:intergenic |
| GTGATGACGTTCTTGTTCTC+CGG | 0.413708 | 3.4:-78942414 | None:intergenic |
| GAAACATTTGCTGGAGCTAA+AGG | 0.414723 | 3.4:+78945071 | MS.gene045358:CDS |
| TTGCTGTGAGCGTTCTTTCT+CGG | 0.416564 | 3.4:+78952489 | MS.gene045358:CDS |
| TTTGCAAAGTTTGAATTTCG+AGG | 0.419600 | 3.4:-78953099 | None:intergenic |
| AAACATTTGCTGGAGCTAAA+GGG | 0.420145 | 3.4:+78945072 | MS.gene045358:CDS |
| AATATGGATACTGATATATC+AGG | 0.422969 | 3.4:+78953383 | MS.gene045358:CDS |
| TCGAGAGATTCCTGCGCTCA+TGG | 0.424086 | 3.4:+78943411 | MS.gene045358:CDS |
| ACTAACATGACATATCCTTT+TGG | 0.427196 | 3.4:-78949134 | None:intergenic |
| CCTTCTCATCAAGATCAACT+TGG | 0.427850 | 3.4:-78953517 | None:intergenic |
| AGTTGGAGAAGCTTCGTATA+TGG | 0.428659 | 3.4:+78952705 | MS.gene045358:CDS |
| GATTCCATCAACTCCTCATC+AGG | 0.429278 | 3.4:-78945348 | None:intergenic |
| AATCGTGTAAAATCAAGGTT+GGG | 0.429532 | 3.4:+78945723 | MS.gene045358:CDS |
| AGACCATCGATAACTCCATC+TGG | 0.430893 | 3.4:+78945472 | MS.gene045358:CDS |
| CGGTCCAAATGCTGAAAGTC+TGG | 0.431082 | 3.4:+78956487 | MS.gene045358:CDS |
| ATCTATAATTTCCTGCATCC+TGG | 0.432798 | 3.4:-78954263 | None:intergenic |
| TGCTGAGTTGACGAATTTGA+TGG | 0.433178 | 3.4:+78953349 | MS.gene045358:CDS |
| TTCCTTGTTATGCAGGATCA+TGG | 0.434231 | 3.4:+78956597 | MS.gene045358:intron |
| TGTTCTCCGGGTCGAAACTC+CGG | 0.437908 | 3.4:-78942401 | None:intergenic |
| GACTCTAGAAGAAATTCAAT+TGG | 0.441635 | 3.4:+78953174 | MS.gene045358:CDS |
| TACCTTCGTGACAGTTAAAC+AGG | 0.442230 | 3.4:+78955031 | MS.gene045358:intron |
| TCTTTGGACCAGCAAGGCTC+TGG | 0.443969 | 3.4:+78952212 | MS.gene045358:CDS |
| GACAATCCCCAATGCTGAAA+AGG | 0.445333 | 3.4:+78952757 | MS.gene045358:CDS |
| TTAGAAAGTGAGCTTGGTTG+TGG | 0.445491 | 3.4:+78953136 | MS.gene045358:CDS |
| GAGGATTTAGAAAGTGAGCT+TGG | 0.448238 | 3.4:+78953130 | MS.gene045358:CDS |
| CTGTGACCAGACCTAGCATT+AGG | 0.448470 | 3.4:-78942610 | None:intergenic |
| TGATTACATCATCAAGTGCC+TGG | 0.450118 | 3.4:-78952817 | None:intergenic |
| AGAACCTGATGAGGAGTTGA+TGG | 0.454055 | 3.4:+78945344 | MS.gene045358:intron |
| TAGGGTTAAGGGTTTGAAGA+AGG | 0.454499 | 3.4:-78942436 | None:intergenic |
| ATTTGGACCGTCCAAATTTG+TGG | 0.456117 | 3.4:-78956474 | None:intergenic |
| AAATAAGAAGGGTGCTAAAA+GGG | 0.457318 | 3.4:+78947999 | MS.gene045358:CDS |
| TGCGCTCATGGGTGTTTCGA+AGG | 0.462259 | 3.4:+78943423 | MS.gene045358:CDS |
| CTGGTCCAAAGATTGAAGCT+TGG | 0.467024 | 3.4:-78952201 | None:intergenic |
| GCACAGTATAATCGAATCTC+AGG | 0.468434 | 3.4:+78956858 | MS.gene045358:CDS |
| AACTTCTTCTTTAACGTGGA+AGG | 0.469089 | 3.4:-78943505 | None:intergenic |
| GACCTTGAGGAGGAGTTTGA+AGG | 0.472709 | 3.4:+78945159 | MS.gene045358:CDS |
| GAAGAAAATATGTTGAAGAT+TGG | 0.472939 | 3.4:+78954412 | MS.gene045358:CDS |
| CAAAGCATCCTCAGCACTGA+AGG | 0.480099 | 3.4:-78945691 | None:intergenic |
| TAACTTATCTAAACACCAAA+AGG | 0.480117 | 3.4:+78949119 | MS.gene045358:CDS |
| ATGAGAGGAAGATGTAGTGC+AGG | 0.481825 | 3.4:+78956227 | MS.gene045358:CDS |
| TGCTTAAAGCTTTCTTGCAC+CGG | 0.481962 | 3.4:+78942577 | MS.gene045358:CDS |
| ATACCTTAAGCTGGATAAGC+TGG | 0.485539 | 3.4:-78955152 | None:intergenic |
| ATGCTTGCAGCAAATTCGTC+TGG | 0.485767 | 3.4:+78947685 | MS.gene045358:intron |
| AGGGAGGATTCCTTCTGATA+AGG | 0.485776 | 3.4:+78948018 | MS.gene045358:CDS |
| ACTTAAATGCAAATGAAAGT+TGG | 0.485931 | 3.4:+78947345 | MS.gene045358:CDS |
| TGATGACGTTCTTGTTCTCC+GGG | 0.487340 | 3.4:-78942413 | None:intergenic |
| GGATCGGGTACCACCACCTT+CGG | 0.488070 | 3.4:-78956065 | None:intergenic |
| CGAGAGATTCCTGCGCTCAT+GGG | 0.488137 | 3.4:+78943412 | MS.gene045358:CDS |
| GCTCTTGCAACCCTTTCAAA+AGG | 0.489126 | 3.4:-78952451 | None:intergenic |
| ACCGTTGGGACCGACGATTA+GGG | 0.491248 | 3.4:-78942454 | None:intergenic |
| GATAATATCTCTCTGCATGC+TGG | 0.491315 | 3.4:-78956699 | None:intergenic |
| AGAAAAGAGATGTACAGAAA+AGG | 0.495584 | 3.4:+78952273 | MS.gene045358:CDS |
| ATCGTCGGTCCCAACGGTGC+CGG | 0.495884 | 3.4:+78942459 | MS.gene045358:CDS |
| TCGATGGTCTTCTTGAGGAC+AGG | 0.496469 | 3.4:-78945459 | None:intergenic |
| CAATTGTGGAATTCTTGCAT+TGG | 0.496655 | 3.4:+78956442 | MS.gene045358:CDS |
| CTCCGGTTCAAAACCGCTGC+CGG | 0.497097 | 3.4:+78942841 | MS.gene045358:CDS |
| TAATCGTGTAAAATCAAGGT+TGG | 0.498249 | 3.4:+78945722 | MS.gene045358:CDS |
| AGACAGGTTGAAGGAGCTGC+AGG | 0.503868 | 3.4:+78954198 | MS.gene045358:CDS |
| ACTTCTTCTTTAACGTGGAA+GGG | 0.504784 | 3.4:-78943504 | None:intergenic |
| GTAGAGACGTGGTTTGCATA+AGG | 0.505155 | 3.4:+78942863 | MS.gene045358:CDS |
| AAAGAAAGGAGACAGGTTGA+AGG | 0.507362 | 3.4:+78954189 | MS.gene045358:CDS |
| TCACTAATCGTGTAAAATCA+AGG | 0.509390 | 3.4:+78945718 | MS.gene045358:CDS |
| TTCTTCAGGTCCTTATCAGA+AGG | 0.509999 | 3.4:-78948028 | None:intergenic |
| TACAATGGCTACTGATTCAA+AGG | 0.511814 | 3.4:+78947820 | MS.gene045358:CDS |
| CCAGCAAGTCAAGGAAGAGC+TGG | 0.515756 | 3.4:+78952784 | MS.gene045358:CDS |
| TTACCTCCTAATGCTAGGTC+TGG | 0.517145 | 3.4:+78942604 | MS.gene045358:CDS |
| GGACCGTCCAAATTTGTGGT+TGG | 0.519912 | 3.4:-78956470 | None:intergenic |
| CACCACATTATACCTTAAGC+TGG | 0.521804 | 3.4:-78955161 | None:intergenic |
| TTGTGGCAACAGACTTATAG+AGG | 0.523323 | 3.4:+78956007 | MS.gene045358:CDS |
| ACCCTAATCGTCGGTCCCAA+CGG | 0.524311 | 3.4:+78942453 | MS.gene045358:CDS |
| AAACCTTATAACTGTAGGAT+CGG | 0.524478 | 3.4:-78956081 | None:intergenic |
| TAGCTTGCTGATCTCCCAGA+TGG | 0.524768 | 3.4:-78945487 | None:intergenic |
| AGATGCTGATCAAAGGCATC+CGG | 0.530517 | 3.4:+78942382 | MS.gene045358:CDS |
| ACAAACACAAATAAGCAAGT+TGG | 0.531132 | 3.4:+78945404 | MS.gene045358:CDS |
| CATTCTGATTCCGAAGGTGG+TGG | 0.531974 | 3.4:+78956055 | MS.gene045358:CDS |
| AAGTTGTGAAACCAGGATGC+AGG | 0.533607 | 3.4:+78954252 | MS.gene045358:CDS |
| GATCAGATACAGCAGTTGGA+TGG | 0.534765 | 3.4:+78945000 | MS.gene045358:CDS |
| ATAATCAGAGTCTGCACTTG+AGG | 0.534890 | 3.4:-78952678 | None:intergenic |
| GTGCATTGTAGTATCTGTCC+AGG | 0.535052 | 3.4:-78955293 | None:intergenic |
| TTATAGATGAACTAGACAAA+AGG | 0.537241 | 3.4:+78954278 | MS.gene045358:CDS |
| AAGATGTAGTGCAGGACAGA+AGG | 0.540905 | 3.4:+78956235 | MS.gene045358:CDS |
| AACCTTATAACTGTAGGATC+GGG | 0.541554 | 3.4:-78956080 | None:intergenic |
| TTCGAAACACCCATGAGCGC+AGG | 0.542108 | 3.4:-78943421 | None:intergenic |
| TTCTGATAAGGACCTGAAGA+AGG | 0.542753 | 3.4:+78948030 | MS.gene045358:CDS |
| TAGCTATAGATGTGCTGACA+TGG | 0.543605 | 3.4:+78943387 | MS.gene045358:CDS |
| TCTTAAGCAGGCCCAATACA+AGG | 0.544643 | 3.4:+78955107 | MS.gene045358:CDS |
| TGACAAGGAGTTGGTTGAGC+CGG | 0.545549 | 3.4:+78953042 | MS.gene045358:CDS |
| GAAAGTGAGCTTGGTTGTGG+AGG | 0.546111 | 3.4:+78953139 | MS.gene045358:CDS |
| AGAAAGAACGCTCACAGCAA+GGG | 0.547047 | 3.4:-78952486 | None:intergenic |
| AAAAGATCAGATACAGCAGT+TGG | 0.547994 | 3.4:+78944996 | MS.gene045358:CDS |
| TATGCAAACCACGTCTCTAC+CGG | 0.549096 | 3.4:-78942860 | None:intergenic |
| GGCATCTCTCATCATACGGT+TGG | 0.549446 | 3.4:+78956397 | MS.gene045358:CDS |
| ACATTTGAAAATTCTTGCTG+TGG | 0.549787 | 3.4:+78952652 | MS.gene045358:CDS |
| AGGTACTCTAACTCAAAGAA+AGG | 0.549818 | 3.4:+78954175 | MS.gene045358:intron |
| ATTCATTCTGATTCCGAAGG+TGG | 0.550830 | 3.4:+78956052 | MS.gene045358:CDS |
| ATGCAAGAATTCCACAATTG+AGG | 0.551543 | 3.4:-78956439 | None:intergenic |
| ACACTGAACTCAAGATGGCA+TGG | 0.552021 | 3.4:+78947315 | MS.gene045358:CDS |
| AGTGATACCTCGCCGGAATG+AGG | 0.552135 | 3.4:-78942958 | None:intergenic |
| AAATAAGATTGATCTTAAGC+AGG | 0.552984 | 3.4:+78955095 | MS.gene045358:CDS |
| TACTGGCATCTCTCATCATA+CGG | 0.554024 | 3.4:+78956393 | MS.gene045358:CDS |
| TTGGAGCTCGTTGCATTGCA+GGG | 0.555173 | 3.4:+78953193 | MS.gene045358:CDS |
| AATTATCCCAGGACAGGCAG+AGG | 0.556649 | 3.4:+78954467 | MS.gene045358:CDS |
| ATCGTGTAAAATCAAGGTTG+GGG | 0.557025 | 3.4:+78945724 | MS.gene045358:CDS |
| AAGAAGCCTCTGCCTGTCCT+GGG | 0.558476 | 3.4:-78954473 | None:intergenic |
| AACCACGTCTCTACCGGCAG+CGG | 0.559352 | 3.4:-78942854 | None:intergenic |
| GCGCTTGGATAAAGGTCCAA+AGG | 0.563340 | 3.4:-78953947 | None:intergenic |
| AAATAACACTGAACTCAAGA+TGG | 0.563459 | 3.4:+78947310 | MS.gene045358:CDS |
| CATGGAGGACAGGAAAGGCC+AGG | 0.565053 | 3.4:+78956615 | MS.gene045358:CDS |
| AGCAAATATAACATTGCAGA+TGG | 0.567660 | 3.4:+78952409 | MS.gene045358:intron |
| AACATTTGCTGGAGCTAAAG+GGG | 0.569155 | 3.4:+78945073 | MS.gene045358:CDS |
| ACCAGAAATTATCCCAGGAC+AGG | 0.569225 | 3.4:+78954461 | MS.gene045358:CDS |
| AGTATTCATTCTGATTCCGA+AGG | 0.570105 | 3.4:+78956049 | MS.gene045358:CDS |
| TATGCAGGATCATGGAGGAC+AGG | 0.570216 | 3.4:+78956605 | MS.gene045358:intron |
| GCAACAGACTTATAGAGGAC+AGG | 0.572063 | 3.4:+78956012 | MS.gene045358:CDS |
| CAGGCAGAGGCTTCTTTCGG+AGG | 0.572534 | 3.4:+78954480 | MS.gene045358:CDS |
| GATTACATCATCAAGTGCCT+GGG | 0.574783 | 3.4:-78952816 | None:intergenic |
| CGAAAATAAAGCCCTTAATG+TGG | 0.575676 | 3.4:+78947763 | MS.gene045358:CDS |
| TGTTCAACATATTTCACCAC+CGG | 0.577672 | 3.4:-78953061 | None:intergenic |
| CAGATACACAAAGGCACTTG+AGG | 0.579073 | 3.4:+78943765 | MS.gene045358:intron |
| AATCACGGTTGCAGAATGCA+AGG | 0.579439 | 3.4:+78953411 | MS.gene045358:CDS |
| GTGAGTTACCTCCTAATGCT+AGG | 0.580225 | 3.4:+78942599 | MS.gene045358:CDS |
| GTCTGGCTGCGGCTATCCTG+AGG | 0.580685 | 3.4:+78956504 | MS.gene045358:CDS |
| CAACCAGATTCTCAAACTCG+TGG | 0.581086 | 3.4:-78954017 | None:intergenic |
| AGAATATGTTAAACTTAGCA+AGG | 0.582751 | 3.4:+78952733 | MS.gene045358:CDS |
| GAGAAAGAACGCTCACAGCA+AGG | 0.583398 | 3.4:-78952487 | None:intergenic |
| CTTCAATCTTTGGACCAGCA+AGG | 0.583682 | 3.4:+78952206 | MS.gene045358:CDS |
| TGTCAGCACATCTATAGCTA+AGG | 0.585988 | 3.4:-78943384 | None:intergenic |
| TGCAGCAAATTCGTCTGGAG+GGG | 0.586209 | 3.4:+78947690 | MS.gene045358:intron |
| TAAGAAGGGTGCTAAAAGGG+AGG | 0.586867 | 3.4:+78948002 | MS.gene045358:CDS |
| AACTGCAAAGTTGTGAAACC+AGG | 0.589548 | 3.4:+78954245 | MS.gene045358:CDS |
| TTGCAGCAAATTCGTCTGGA+GGG | 0.589663 | 3.4:+78947689 | MS.gene045358:intron |
| TTCAAACTCCTCCTCAAGGT+CGG | 0.589692 | 3.4:-78945157 | None:intergenic |
| GTCGACAAGATGCTGATCAA+AGG | 0.589698 | 3.4:+78942375 | MS.gene045358:CDS |
| AGGCATCCGGAGTTTCGACC+CGG | 0.592178 | 3.4:+78942395 | MS.gene045358:CDS |
| CACTGAACTCAAGATGGCAT+GGG | 0.592682 | 3.4:+78947316 | MS.gene045358:CDS |
| CTAACTCAAAGAAAGGAGAC+AGG | 0.593565 | 3.4:+78954182 | MS.gene045358:CDS |
| AACGTGGAAGGGTCTTGAAG+TGG | 0.594774 | 3.4:-78943493 | None:intergenic |
| ATGGCAAACCTTATAACTGT+AGG | 0.597534 | 3.4:-78956086 | None:intergenic |
| CTCCCAGATGGAGTTATCGA+TGG | 0.597692 | 3.4:-78945475 | None:intergenic |
| GACCATCGATAACTCCATCT+GGG | 0.597732 | 3.4:+78945473 | MS.gene045358:CDS |
| CGAATTTGATGGATGAGCAG+AGG | 0.597782 | 3.4:+78953360 | MS.gene045358:CDS |
| GGACGCTAAAATTGATCATG+TGG | 0.597893 | 3.4:+78945038 | MS.gene045358:CDS |
| AGTGAAGACTGACAAGGAGT+TGG | 0.598043 | 3.4:+78953033 | MS.gene045358:CDS |
| CTTCTCATCAAGATCAACTT+GGG | 0.600285 | 3.4:-78953516 | None:intergenic |
| CCAAGTTGATCTTGATGAGA+AGG | 0.601866 | 3.4:+78953517 | MS.gene045358:CDS |
| CAAGGAGTTGGTTGAGCCGG+TGG | 0.602126 | 3.4:+78953045 | MS.gene045358:CDS |
| AGACTCTGATTATCAGCAGT+TGG | 0.605534 | 3.4:+78952688 | MS.gene045358:CDS |
| AGAGCTGGATCACAAATCCC+AGG | 0.606303 | 3.4:+78952799 | MS.gene045358:CDS |
| AGTTATCGATGGTCTTCTTG+AGG | 0.606694 | 3.4:-78945464 | None:intergenic |
| GCATCCTCAGCACTGAAGGG+TGG | 0.608278 | 3.4:-78945687 | None:intergenic |
| TTAATCACAGCAAAGAGGGA+AGG | 0.609678 | 3.4:+78952613 | MS.gene045358:intron |
| ATCAAACTTCTTCTTTAACG+TGG | 0.610212 | 3.4:-78943509 | None:intergenic |
| ACAAAATTATAAGAGAATTG+TGG | 0.610414 | 3.4:+78955990 | MS.gene045358:CDS |
| AACTTTGCAAAAGAAAGTTG+AGG | 0.611565 | 3.4:+78953111 | MS.gene045358:CDS |
| ATACAGGTTCTCATGCAGAC+TGG | 0.612239 | 3.4:+78956188 | MS.gene045358:intron |
| CGAAGGGACAGATTAAGCTC+CGG | 0.615621 | 3.4:+78942824 | MS.gene045358:CDS |
| CGAACACCAGAAATTATCCC+AGG | 0.616060 | 3.4:+78954456 | MS.gene045358:CDS |
| TGCAGGCTCACATGTCTCTG+AGG | 0.618854 | 3.4:+78945601 | MS.gene045358:intron |
| ATATTTATTAGAACCTGATG+AGG | 0.621136 | 3.4:+78945335 | MS.gene045358:intron |
| AAAGGAACTCCAGCAAGTCA+AGG | 0.621494 | 3.4:+78952775 | MS.gene045358:CDS |
| CAATCGAGAGATGCTTACAA+TGG | 0.621502 | 3.4:+78947805 | MS.gene045358:CDS |
| GATGCTGAGTTAGAAATGAG+AGG | 0.622381 | 3.4:+78956212 | MS.gene045358:CDS |
| CTTGCAGCAAATTCGTCTGG+AGG | 0.623052 | 3.4:+78947688 | MS.gene045358:intron |
| TGAAATGGCAAACAAAGACC+TGG | 0.623587 | 3.4:+78955275 | MS.gene045358:CDS |
| CACCTTCAAACTCCTCCTCA+AGG | 0.624156 | 3.4:-78945161 | None:intergenic |
| AACCGCTGCCGGTAGAGACG+TGG | 0.628955 | 3.4:+78942852 | MS.gene045358:CDS |
| GAAGCAATATTCCGACCTTG+AGG | 0.629350 | 3.4:+78945146 | MS.gene045358:CDS |
| ATATATCAGGTATTCAATCA+CGG | 0.630373 | 3.4:+78953396 | MS.gene045358:CDS |
| TGCGGGAGAAACCGAAACGA+AGG | 0.631254 | 3.4:+78942807 | MS.gene045358:CDS |
| TAAGTATCGAGAAGCTGACA+AGG | 0.632404 | 3.4:+78949056 | MS.gene045358:CDS |
| AAAGCCACCCTTCAGTGCTG+AGG | 0.638736 | 3.4:+78945683 | MS.gene045358:CDS |
| GCAATATTCCGACCTTGAGG+AGG | 0.639352 | 3.4:+78945149 | MS.gene045358:CDS |
| GAGCCAACCACAAATTTGGA+CGG | 0.640463 | 3.4:+78956467 | MS.gene045358:CDS |
| AGGATCATGGAGGACAGGAA+AGG | 0.641225 | 3.4:+78956610 | MS.gene045358:intron |
| AAATGCTGAAAGTCTGGCTG+CGG | 0.641502 | 3.4:+78956493 | MS.gene045358:CDS |
| ATCACGGTTGCAGAATGCAA+GGG | 0.643434 | 3.4:+78953412 | MS.gene045358:CDS |
| CAGCTTCATTCACGACCCCA+AGG | 0.644788 | 3.4:+78942630 | MS.gene045358:CDS |
| TGACAGTTAAACAGGTGCAA+AGG | 0.647336 | 3.4:+78955039 | MS.gene045358:intron |
| TTAGAAGAGTGATACCTCGC+CGG | 0.648711 | 3.4:-78942965 | None:intergenic |
| TGACCAGACCTAGCATTAGG+AGG | 0.650160 | 3.4:-78942607 | None:intergenic |
| AAAGCATCCTCAGCACTGAA+GGG | 0.652918 | 3.4:-78945690 | None:intergenic |
| GTTGTGGAGGACCAGAAGTG+AGG | 0.655223 | 3.4:+78953152 | MS.gene045358:CDS |
| ACAAACTAAGAGAGAGCACA+AGG | 0.666140 | 3.4:+78947388 | MS.gene045358:CDS |
| CTTGTTATGCAGGATCATGG+AGG | 0.673703 | 3.4:+78956600 | MS.gene045358:intron |
| AAACCCTTAACCCTAATCGT+CGG | 0.673783 | 3.4:+78942444 | MS.gene045358:CDS |
| TCGTGTAAAATCAAGGTTGG+GGG | 0.676575 | 3.4:+78945725 | MS.gene045358:CDS |
| AGCATTAGGAGGTAACTCAC+CGG | 0.679949 | 3.4:-78942596 | None:intergenic |
| GCGGGAGAAACCGAAACGAA+GGG | 0.681553 | 3.4:+78942808 | MS.gene045358:CDS |
| GGTTATAAAGAAACTTCACA+AGG | 0.683172 | 3.4:+78943786 | MS.gene045358:CDS |
| AGCTCAAGTGAAGACTGACA+AGG | 0.685303 | 3.4:+78953027 | MS.gene045358:CDS |
| TATTAATCCTCATTCCGGCG+AGG | 0.712892 | 3.4:+78942951 | MS.gene045358:CDS |
| TGTACTGAGCAGATACACAA+AGG | 0.715032 | 3.4:+78943756 | MS.gene045358:intron |
| GCTTCGGGAAAACATCACAC+AGG | 0.717999 | 3.4:+78944951 | MS.gene045358:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78942366 | 78956894 | 78942366 | ID=MS.gene045358 |
| chr3.4 | mRNA | 78942366 | 78956894 | 78942366 | ID=MS.gene045358.t1;Parent=MS.gene045358 |
| chr3.4 | exon | 78942366 | 78942488 | 78942366 | ID=MS.gene045358.t1.exon1;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78942366 | 78942488 | 78942366 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78942565 | 78942651 | 78942565 | ID=MS.gene045358.t1.exon2;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78942565 | 78942651 | 78942565 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78942805 | 78942972 | 78942805 | ID=MS.gene045358.t1.exon3;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78942805 | 78942972 | 78942805 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78943376 | 78943551 | 78943376 | ID=MS.gene045358.t1.exon4;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78943376 | 78943551 | 78943376 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78943768 | 78943882 | 78943768 | ID=MS.gene045358.t1.exon5;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78943768 | 78943882 | 78943768 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78944952 | 78945180 | 78944952 | ID=MS.gene045358.t1.exon6;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78944952 | 78945180 | 78944952 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78945346 | 78945524 | 78945346 | ID=MS.gene045358.t1.exon7;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78945346 | 78945524 | 78945346 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78945606 | 78945776 | 78945606 | ID=MS.gene045358.t1.exon8;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78945606 | 78945776 | 78945606 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78947305 | 78947409 | 78947305 | ID=MS.gene045358.t1.exon9;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78947305 | 78947409 | 78947305 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78947489 | 78947596 | 78947489 | ID=MS.gene045358.t1.exon10;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78947489 | 78947596 | 78947489 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78947695 | 78947906 | 78947695 | ID=MS.gene045358.t1.exon11;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78947695 | 78947906 | 78947695 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78947979 | 78948071 | 78947979 | ID=MS.gene045358.t1.exon12;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78947979 | 78948071 | 78947979 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78949023 | 78949150 | 78949023 | ID=MS.gene045358.t1.exon13;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78949023 | 78949150 | 78949023 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78952180 | 78952294 | 78952180 | ID=MS.gene045358.t1.exon14;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78952180 | 78952294 | 78952180 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78952411 | 78952540 | 78952411 | ID=MS.gene045358.t1.exon15;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78952411 | 78952540 | 78952411 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78952623 | 78952832 | 78952623 | ID=MS.gene045358.t1.exon16;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78952623 | 78952832 | 78952623 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78953013 | 78953221 | 78953013 | ID=MS.gene045358.t1.exon17;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78953013 | 78953221 | 78953013 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78953337 | 78953538 | 78953337 | ID=MS.gene045358.t1.exon18;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78953337 | 78953538 | 78953337 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78953934 | 78954103 | 78953934 | ID=MS.gene045358.t1.exon19;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78953934 | 78954103 | 78953934 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78954177 | 78954501 | 78954177 | ID=MS.gene045358.t1.exon20;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78954177 | 78954501 | 78954177 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78955045 | 78955170 | 78955045 | ID=MS.gene045358.t1.exon21;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78955045 | 78955170 | 78955045 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78955270 | 78955322 | 78955270 | ID=MS.gene045358.t1.exon22;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78955270 | 78955322 | 78955270 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78955949 | 78956099 | 78955949 | ID=MS.gene045358.t1.exon23;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78955949 | 78956099 | 78955949 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78956194 | 78956256 | 78956194 | ID=MS.gene045358.t1.exon24;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78956194 | 78956256 | 78956194 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78956392 | 78956525 | 78956392 | ID=MS.gene045358.t1.exon25;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78956392 | 78956525 | 78956392 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78956612 | 78956740 | 78956612 | ID=MS.gene045358.t1.exon26;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78956612 | 78956740 | 78956612 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| chr3.4 | exon | 78956855 | 78956894 | 78956855 | ID=MS.gene045358.t1.exon27;Parent=MS.gene045358.t1 |
| chr3.4 | CDS | 78956855 | 78956894 | 78956855 | ID=cds.MS.gene045358.t1;Parent=MS.gene045358.t1 |
| Gene Sequence |
| Protein sequence |
