AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65003


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65003.t1 MTR_7g446520 64.957 351 74 4 24 374 15 316 1.48e-149 431
MS.gene65003.t1 MTR_7g028855 68.889 270 45 2 1 270 33 263 1.08e-116 352
MS.gene65003.t1 MTR_7g446480 53.061 343 66 8 1 343 32 279 1.71e-99 302
MS.gene65003.t1 MTR_7g446510 57.826 230 81 5 118 343 77 294 7.93e-76 242
MS.gene65003.t1 MTR_7g446510 61.947 113 35 3 369 475 48 158 1.74e-32 127
MS.gene65003.t1 MTR_1g070355 32.258 248 162 2 96 343 47 288 1.18e-35 140
MS.gene65003.t1 MTR_5g076070 26.937 271 164 3 73 343 31 267 1.51e-30 120
MS.gene65003.t1 MTR_6g022080 26.455 189 135 3 104 289 60 247 2.47e-18 85.1
MS.gene65003.t1 MTR_8g467420 43.836 73 41 0 110 182 61 133 8.69e-17 78.6
MS.gene65003.t1 MTR_0402s0040 33.143 175 109 4 129 300 28 197 2.00e-16 82.0
MS.gene65003.t1 MTR_6g053140 32.164 171 100 5 73 241 51 207 3.94e-16 77.8
MS.gene65003.t1 MTR_6g051425 27.143 210 149 3 137 343 27 235 7.80e-16 79.3
MS.gene65003.t1 MTR_1g008290 34.426 122 75 2 187 308 10 126 1.81e-14 71.2
MS.gene65003.t1 MTR_4g035820 30.137 219 137 7 133 342 81 292 2.32e-14 76.3
MS.gene65003.t1 MTR_3g448650 42.500 80 46 0 123 202 78 157 3.87e-14 71.2
MS.gene65003.t1 MTR_2g101460 30.233 172 107 1 73 244 14 172 3.89e-14 72.0
MS.gene65003.t1 MTR_2g101460 34.426 122 80 0 123 244 41 162 1.71e-13 69.7
MS.gene65003.t1 MTR_0060s0090 38.462 78 48 0 132 209 61 138 2.08e-13 68.6
MS.gene65003.t1 MTR_2g098880 36.752 117 71 3 121 235 55 170 7.35e-13 68.9
MS.gene65003.t1 MTR_2g098880 36.752 117 71 3 121 235 67 182 8.00e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65003.t1 AT4G38180 33.019 212 138 4 131 340 77 286 5.36e-21 97.4
MS.gene65003.t1 AT4G15090 26.512 215 152 5 131 343 55 265 1.04e-14 77.4
MS.gene65003.t1 AT4G15090 26.512 215 152 5 131 343 55 265 1.04e-14 77.4
MS.gene65003.t1 AT4G15090 26.512 215 152 5 131 343 55 265 1.04e-14 77.4
MS.gene65003.t1 AT4G15090 26.512 215 152 5 131 343 55 265 1.04e-14 77.4
MS.gene65003.t1 AT4G15090 26.512 215 152 5 131 343 55 265 1.04e-14 77.4
MS.gene65003.t1 AT1G10240 26.295 251 162 8 109 343 24 267 2.05e-12 70.1
MS.gene65003.t1 AT1G10240 26.295 251 162 8 109 343 24 267 2.05e-12 70.1
MS.gene65003.t1 AT3G07500 37.719 114 67 3 122 234 28 138 6.53e-12 65.5
MS.gene65003.t1 AT3G22170 25.172 290 165 9 81 343 10 274 6.65e-12 68.6
MS.gene65003.t1 AT3G22170 25.172 290 165 9 81 343 10 274 6.65e-12 68.6

Find 91 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATATGAGGTCAAGAATA+TGG 0.224035 8.4:+39717105 None:intergenic
GACGTTTGAAATGTCTATTT+TGG 0.234421 8.4:-39718995 MS.gene65003:CDS
AATAAGAACTTGTCATATAA+TGG 0.247315 8.4:-39719207 MS.gene65003:CDS
TGCATTTACACCTTGTTTAT+CGG 0.260369 8.4:-39719280 MS.gene65003:CDS
TGTTCACTACAGACCCAAAA+AGG 0.266221 8.4:-39719366 MS.gene65003:CDS
CGCAATATAATCAAATATTC+TGG 0.294303 8.4:+39717984 None:intergenic
AGTGATGATGGTGGTTGTTC+TGG 0.317361 8.4:-39719842 MS.gene65003:CDS
ATTAACTGCTGAAGGAATAA+TGG 0.327415 8.4:-39719621 MS.gene65003:CDS
CTGTTAAGAAGAGTGATATT+AGG 0.348071 8.4:-39719529 MS.gene65003:CDS
AGTCTCCATGATGCCCTAAC+AGG 0.397514 8.4:+39717162 None:intergenic
ATAAGAACTTGTCATATAAT+GGG 0.403187 8.4:-39719206 MS.gene65003:CDS
TGCTGAAGGAATAATGGAAA+TGG 0.417359 8.4:-39719615 MS.gene65003:CDS
CGTGTGGTGAGGCACCTGTT+AGG 0.420139 8.4:-39717176 MS.gene65003:CDS
AAGGGTGGATATCTTGGTGT+TGG 0.424935 8.4:-39719167 MS.gene65003:CDS
TGAGGCTGCTGAAATCTATA+CGG 0.433917 8.4:-39718251 MS.gene65003:CDS
TGTAAATGCACAACACTAGA+TGG 0.434308 8.4:+39719293 None:intergenic
TAGCACAGGGGATGAAAACT+TGG 0.442426 8.4:+39718300 None:intergenic
GATTATAGTGTTGGTGATAA+AGG 0.444719 8.4:-39719818 MS.gene65003:CDS
AGGGTGGATATCTTGGTGTT+GGG 0.445698 8.4:-39719166 MS.gene65003:CDS
TTTAAGTACTGTAAGTGTAA+AGG 0.451106 8.4:-39719557 MS.gene65003:CDS
GACGATAGTTCTGATGAAAC+TGG 0.457084 8.4:-39719875 MS.gene65003:CDS
AAACCTATCCGATGATTGTT+GGG 0.461967 8.4:-39719997 None:intergenic
GCTCAGAAGGGTGGATATCT+TGG 0.465501 8.4:-39719173 MS.gene65003:CDS
TAGTGAACACGAAGCCTAGC+TGG 0.465685 8.4:+39719380 None:intergenic
GCAGATAAAGCACAAATTGA+TGG 0.466709 8.4:-39719245 MS.gene65003:CDS
CACTAGATGGAGTAAGTTCA+TGG 0.468010 8.4:+39719306 None:intergenic
TGTTCTGGTGATTATAGTGT+TGG 0.469535 8.4:-39719827 MS.gene65003:CDS
GAGAGAAGAAGCATTTATCA+AGG 0.474767 8.4:-39719448 MS.gene65003:CDS
AATAATGGAAATGGAATTTG+CGG 0.487093 8.4:-39719606 MS.gene65003:CDS
AAGCCAAAGTAGCACAGAAA+AGG 0.490310 8.4:-39717209 MS.gene65003:CDS
GGGATACATTGTGGCTCAGA+AGG 0.492920 8.4:-39719186 MS.gene65003:CDS
GAAACCTATCCGATGATTGT+TGG 0.493181 8.4:-39719998 None:intergenic
AATGTAGATGATAGTTCTGA+TGG 0.493462 8.4:-39719941 MS.gene65003:CDS
TGCAGATGAGTTGTTAGCAC+AGG 0.500743 8.4:+39718286 None:intergenic
GCAGTATGTATGCAACAAGC+AGG 0.502107 8.4:-39719477 MS.gene65003:CDS
ATATATGAGGTCAAGAATAT+GGG 0.503744 8.4:+39717106 None:intergenic
TGTAGTTGTTGGTGAGGAAA+TGG 0.504666 8.4:-39719657 MS.gene65003:CDS
GAAGATGATGATGTAGTTGT+TGG 0.505754 8.4:-39719668 MS.gene65003:CDS
GTGAAAGAAGAGATTATGAA+AGG 0.507624 8.4:-39718211 MS.gene65003:CDS
TTGACAAAATATATTGAGGA+AGG 0.507727 8.4:-39718133 MS.gene65003:CDS
AGTGAAGGTCATGGTAATGA+AGG 0.507811 8.4:-39719722 MS.gene65003:CDS
ATAATGGAAATGGAATTTGC+GGG 0.512795 8.4:-39719605 MS.gene65003:CDS
CCGATGATTGTTGGGAGTCA+AGG 0.516932 8.4:-39719989 MS.gene65003:CDS
ATAAATTCATTAACTGCTGA+AGG 0.519495 8.4:-39719629 MS.gene65003:CDS
CCTTGACTCCCAACAATCAT+CGG 0.519588 8.4:+39719989 None:intergenic
AGCATTTATCAAGGTCAGAT+AGG 0.519899 8.4:-39719439 MS.gene65003:CDS
AATATTTGATTATATTGCGT+TGG 0.522218 8.4:-39717980 MS.gene65003:CDS
TAGGGCATCATGGAGACTAA+TGG 0.524044 8.4:-39717157 MS.gene65003:CDS
GAATTTGACAAAATATATTG+AGG 0.529054 8.4:-39718137 MS.gene65003:CDS
GTGTGGTGAGGCACCTGTTA+GGG 0.531715 8.4:-39717175 MS.gene65003:CDS
CAGAATTCTCAAGCGAATGC+AGG 0.540569 8.4:-39719899 MS.gene65003:CDS
AGGCACCTGTTAGGGCATCA+TGG 0.549978 8.4:-39717167 MS.gene65003:CDS
TGTTTATCGGCAAATATTCG+AGG 0.554010 8.4:-39719267 MS.gene65003:CDS
CGAATATTTGCCGATAAACA+AGG 0.558539 8.4:+39719270 None:intergenic
TGGCAGGATAAGAACATAGA+CGG 0.565361 8.4:-39717258 MS.gene65003:intron
TTGTTGGTGAGGAAATGGTA+AGG 0.572827 8.4:-39719652 MS.gene65003:CDS
TACATTGTGGCTCAGAAGGG+TGG 0.583038 8.4:-39719182 MS.gene65003:CDS
CAGTATGTATGCAACAAGCA+GGG 0.584535 8.4:-39719476 MS.gene65003:CDS
AGAGGAATGTGGATCAGTTG+AGG 0.594052 8.4:+39719043 None:intergenic
GGAGGCAATGAAAGTGATGA+TGG 0.602419 8.4:-39719854 MS.gene65003:CDS
TCATATAATGGGATACATTG+TGG 0.603031 8.4:-39719195 MS.gene65003:CDS
CAATATTCTACCACTGATGA+CGG 0.609508 8.4:-39719017 MS.gene65003:CDS
GCAGATGAGTTGTTAGCACA+GGG 0.612958 8.4:+39718287 None:intergenic
GGTGAAGATGATGAAAGTCA+AGG 0.619507 8.4:-39719797 MS.gene65003:CDS
GGTCATGGTAATGAAGGTCA+TGG 0.621031 8.4:-39719716 MS.gene65003:CDS
GAAAGGTGTTGCAATGAGTG+TGG 0.626883 8.4:-39718194 MS.gene65003:CDS
CAAGAAATTTGAATCTCGAG+AGG 0.629020 8.4:-39718059 MS.gene65003:intron
GATAGTTCTGATGGGAGTCG+TGG 0.630048 8.4:-39719932 MS.gene65003:CDS
GAATATTGACAAGAGGAATG+TGG 0.631435 8.4:+39719032 None:intergenic
AGTATGTATGCAACAAGCAG+GGG 0.634341 8.4:-39719475 MS.gene65003:CDS
ATGTAGATGATAGTTCTGAT+GGG 0.634382 8.4:-39719940 MS.gene65003:CDS
TCTGCATTGTCTTGAACGTG+AGG 0.635704 8.4:-39718269 MS.gene65003:CDS
GGATACATTGTGGCTCAGAA+GGG 0.635876 8.4:-39719185 MS.gene65003:CDS
TTTCAAACGTCCGTCATCAG+TGG 0.642596 8.4:+39719007 None:intergenic
CTCGTACAAAGTGTCCAGCT+AGG 0.644688 8.4:-39719394 MS.gene65003:CDS
ATTGATGGTCTTCAATTACA+CGG 0.645357 8.4:-39719230 MS.gene65003:CDS
AGTGGTAGAATATTGACAAG+AGG 0.645661 8.4:+39719025 None:intergenic
GAAAAGAAGAACGTGTGGTG+AGG 0.652176 8.4:-39717187 MS.gene65003:CDS
AATGAAGGTCATGGTAGTGA+AGG 0.653004 8.4:-39719707 MS.gene65003:CDS
TGATGATGTAGTTGTTGGTG+AGG 0.665725 8.4:-39719663 MS.gene65003:CDS
TTAACGATGAGATTGTAATG+AGG 0.666140 8.4:-39719499 MS.gene65003:CDS
AAAAGGAAAAGAAGAACGTG+TGG 0.672916 8.4:-39717192 MS.gene65003:CDS
GGATAAGAACATAGACGGCG+AGG 0.683636 8.4:-39717253 MS.gene65003:CDS
GGTGATGAAAGTGAAGGTCA+TGG 0.683798 8.4:-39719731 MS.gene65003:CDS
AGGTGTTGCAATGAGTGTGG+AGG 0.696599 8.4:-39718191 MS.gene65003:CDS
GGCAATGAAAGTGATGATGG+TGG 0.706532 8.4:-39719851 MS.gene65003:CDS
GATAGTTCTGATGAAACTGG+AGG 0.707194 8.4:-39719872 MS.gene65003:CDS
AGTGAAGGTGATGAAACTGA+AGG 0.712471 8.4:-39719752 MS.gene65003:CDS
AGTGAAAGTGATGAAAGTGA+AGG 0.717258 8.4:-39719767 MS.gene65003:CDS
ACTGAAGGTGATGAAAGTGA+AGG 0.722369 8.4:-39719737 MS.gene65003:CDS
CAGATGAGTTGTTAGCACAG+GGG 0.769007 8.4:+39718288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATAGAAACTTATATG+TGG - chr8.4:39718289-39718308 MS.gene65003:CDS 20.0%
!! AAATCATAAAGAGTTATGTT+AGG - chr8.4:39718691-39718710 MS.gene65003:intron 20.0%
!! AAATTGAGAAGTTAATCAAA+AGG + chr8.4:39719823-39719842 None:intergenic 20.0%
!! AACAATAGAAACTTATATGT+GGG - chr8.4:39718290-39718309 MS.gene65003:CDS 20.0%
!! AATAAGAACTTGTCATATAA+TGG - chr8.4:39717895-39717914 MS.gene65003:intron 20.0%
!! AATATTTGATTATATTGCGT+TGG - chr8.4:39719122-39719141 MS.gene65003:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG - chr8.4:39717896-39717915 MS.gene65003:intron 20.0%
!! CCTTCAACAAAAAAAAATAT+GGG + chr8.4:39719078-39719097 None:intergenic 20.0%
!! GAATTTGACAAAATATATTG+AGG - chr8.4:39718965-39718984 MS.gene65003:intron 20.0%
!! TCCTTCAACAAAAAAAAATA+TGG + chr8.4:39719079-39719098 None:intergenic 20.0%
!!! ATTTCTGTATAATTTTGATG+AGG - chr8.4:39718734-39718753 MS.gene65003:intron 20.0%
!!! TTGATTAACTTCTCAATTTT+TGG - chr8.4:39719824-39719843 MS.gene65003:CDS 20.0%
! ATAAATTCATTAACTGCTGA+AGG - chr8.4:39717473-39717492 MS.gene65003:intron 25.0%
! CCAACAATGTGTTTAAATAT+AGG - chr8.4:39719760-39719779 MS.gene65003:CDS 25.0%
! CCTATATTTAAACACATTGT+TGG + chr8.4:39719763-39719782 None:intergenic 25.0%
! CGCAATATAATCAAATATTC+TGG + chr8.4:39719121-39719140 None:intergenic 25.0%
! TTGACAAAATATATTGAGGA+AGG - chr8.4:39718969-39718988 MS.gene65003:intron 25.0%
! TTTCATACAATCTAGAAAAC+TGG + chr8.4:39718322-39718341 None:intergenic 25.0%
!! AAAAATGCGTGTTGTTATTA+AGG - chr8.4:39717994-39718013 MS.gene65003:CDS 25.0%
!! AATAATGGAAATGGAATTTG+CGG - chr8.4:39717496-39717515 MS.gene65003:intron 25.0%
!! AGCAATGTACTCTAATTTTA+CGG - chr8.4:39718500-39718519 MS.gene65003:intron 25.0%
!! ATAACATATCTACCCTTTTT+GGG + chr8.4:39717752-39717771 None:intergenic 25.0%
!! TTTAAGTACTGTAAGTGTAA+AGG - chr8.4:39717545-39717564 MS.gene65003:intron 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG - chr8.4:39718108-39718127 MS.gene65003:CDS 25.0%
!!! AGATCAGATTATTTCTGTTT+TGG - chr8.4:39718145-39718164 MS.gene65003:CDS 25.0%
!!! CCCATATTTTTTTTTGTTGA+AGG - chr8.4:39719075-39719094 MS.gene65003:CDS 25.0%
!!! TGTTAACAATTCAGCTTTTT+TGG - chr8.4:39718464-39718483 MS.gene65003:intron 25.0%
AAGAGTTATGTTAGGAAGAA+AGG - chr8.4:39718699-39718718 MS.gene65003:intron 30.0%
ATATGAGAACAAGGAATTGT+GGG - chr8.4:39718599-39718618 MS.gene65003:intron 30.0%
ATTAACTGCTGAAGGAATAA+TGG - chr8.4:39717481-39717500 MS.gene65003:intron 30.0%
CAAAAAAAAATATGGGAGCA+TGG + chr8.4:39719071-39719090 None:intergenic 30.0%
CAAATATAACTGTTTGTGAG+TGG + chr8.4:39718248-39718267 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG - chr8.4:39718246-39718265 MS.gene65003:CDS 30.0%
CTGTTAAGAAGAGTGATATT+AGG - chr8.4:39717573-39717592 MS.gene65003:intron 30.0%
GTGAAAGAAGAGATTATGAA+AGG - chr8.4:39718891-39718910 MS.gene65003:intron 30.0%
TACCAAAACATATGAGAACA+AGG - chr8.4:39718590-39718609 MS.gene65003:intron 30.0%
TATATTGCGTTGGACAAAAA+AGG - chr8.4:39719132-39719151 MS.gene65003:CDS 30.0%
TTAACGATGAGATTGTAATG+AGG - chr8.4:39717603-39717622 MS.gene65003:intron 30.0%
TTGTAAGAATGTTCAAACTG+TGG - chr8.4:39719166-39719185 MS.gene65003:CDS 30.0%
! AAGGAATTTGAAGAGTTTTG+GGG - chr8.4:39718525-39718544 MS.gene65003:intron 30.0%
! AGAAGGAATTTGAAGAGTTT+TGG - chr8.4:39718523-39718542 MS.gene65003:intron 30.0%
! ATAATGGAAATGGAATTTGC+GGG - chr8.4:39717497-39717516 MS.gene65003:intron 30.0%
! ATTGATGGTCTTCAATTACA+CGG - chr8.4:39717872-39717891 MS.gene65003:intron 30.0%
! CATAACATATCTACCCTTTT+TGG + chr8.4:39717753-39717772 None:intergenic 30.0%
! GAAGGAATTTGAAGAGTTTT+GGG - chr8.4:39718524-39718543 MS.gene65003:intron 30.0%
! TCATATAATGGGATACATTG+TGG - chr8.4:39717907-39717926 MS.gene65003:intron 30.0%
! TGCATTTACACCTTGTTTAT+CGG - chr8.4:39717822-39717841 MS.gene65003:intron 30.0%
! TTCCTTGTTCTCATATGTTT+TGG + chr8.4:39718595-39718614 None:intergenic 30.0%
!! AATGTAGATGATAGTTCTGA+TGG - chr8.4:39717161-39717180 MS.gene65003:CDS 30.0%
!! ATGTAGATGATAGTTCTGAT+GGG - chr8.4:39717162-39717181 MS.gene65003:CDS 30.0%
!! GACGTTTGAAATGTCTATTT+TGG - chr8.4:39718107-39718126 MS.gene65003:CDS 30.0%
!! GATTATAGTGTTGGTGATAA+AGG - chr8.4:39717284-39717303 MS.gene65003:intron 30.0%
!!! AACAATTCAGCTTTTTTGGA+TGG - chr8.4:39718468-39718487 MS.gene65003:intron 30.0%
!!! TTAACTTCTCAATTTTTGGC+AGG - chr8.4:39719828-39719847 MS.gene65003:CDS 30.0%
AAAAGGAAAAGAAGAACGTG+TGG - chr8.4:39719910-39719929 MS.gene65003:CDS 35.0%
AGCATTTATCAAGGTCAGAT+AGG - chr8.4:39717663-39717682 MS.gene65003:intron 35.0%
AGTGAAAGTGATGAAAGTGA+AGG - chr8.4:39717335-39717354 MS.gene65003:intron 35.0%
AGTGGTAGAATATTGACAAG+AGG + chr8.4:39718080-39718099 None:intergenic 35.0%
ATATAACTGTTTGTGAGTGG+TGG + chr8.4:39718245-39718264 None:intergenic 35.0%
CAAGAAATTTGAATCTCGAG+AGG - chr8.4:39719043-39719062 MS.gene65003:CDS 35.0%
CAATATTCTACCACTGATGA+CGG - chr8.4:39718085-39718104 MS.gene65003:CDS 35.0%
CATATGAGAACAAGGAATTG+TGG - chr8.4:39718598-39718617 MS.gene65003:intron 35.0%
CATGATAGCCAAAAAAACAC+GGG - chr8.4:39719256-39719275 MS.gene65003:CDS 35.0%
CGAATATTTGCCGATAAACA+AGG + chr8.4:39717835-39717854 None:intergenic 35.0%
GAACAAATACAACTATCCGT+TGG - chr8.4:39718201-39718220 MS.gene65003:CDS 35.0%
GAATATTGACAAGAGGAATG+TGG + chr8.4:39718073-39718092 None:intergenic 35.0%
GCAGATAAAGCACAAATTGA+TGG - chr8.4:39717857-39717876 MS.gene65003:intron 35.0%
GCATGATAGCCAAAAAAACA+CGG - chr8.4:39719255-39719274 MS.gene65003:CDS 35.0%
GGTACTTACGTTCATATTCA+CGG + chr8.4:39719742-39719761 None:intergenic 35.0%
TGTAAATGCACAACACTAGA+TGG + chr8.4:39717812-39717831 None:intergenic 35.0%
TGTTCTGGTGATTATAGTGT+TGG - chr8.4:39717275-39717294 MS.gene65003:intron 35.0%
TGTTTATCGGCAAATATTCG+AGG - chr8.4:39717835-39717854 MS.gene65003:intron 35.0%
! GAAGATGATGATGTAGTTGT+TGG - chr8.4:39717434-39717453 MS.gene65003:intron 35.0%
! GTACTCTAATTTTACGGAGA+AGG - chr8.4:39718506-39718525 MS.gene65003:intron 35.0%
! TGCTGAAGGAATAATGGAAA+TGG - chr8.4:39717487-39717506 MS.gene65003:intron 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG - chr8.4:39718115-39718134 MS.gene65003:CDS 35.0%
!! AATTTTGATGAGGCAATGAG+AGG - chr8.4:39718744-39718763 MS.gene65003:intron 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG - chr8.4:39718257-39718276 MS.gene65003:CDS 35.0%
!! GAGAGAAGAAGCATTTATCA+AGG - chr8.4:39717654-39717673 MS.gene65003:intron 35.0%
!!! TCATATGTTTTGGTAACCCA+GGG + chr8.4:39718585-39718604 None:intergenic 35.0%
!!! TTATTTCTGTTTTGGCGATG+TGG - chr8.4:39718153-39718172 MS.gene65003:CDS 35.0%
!!! TTTCCTTTTCTGTGCTACTT+TGG + chr8.4:39719899-39719918 None:intergenic 35.0%
AAAGGGATGTAGTTAAAGCG+AGG - chr8.4:39719695-39719714 MS.gene65003:CDS 40.0%
AAGCCAAAGTAGCACAGAAA+AGG - chr8.4:39719893-39719912 MS.gene65003:CDS 40.0%
ACTGAAGGTGATGAAAGTGA+AGG - chr8.4:39717365-39717384 MS.gene65003:intron 40.0%
AGACGTGGTAGAAGGATTAA+AGG - chr8.4:39719677-39719696 MS.gene65003:CDS 40.0%
AGTATGTATGCAACAAGCAG+GGG - chr8.4:39717627-39717646 MS.gene65003:intron 40.0%
AGTGAAGGTGATGAAACTGA+AGG - chr8.4:39717350-39717369 MS.gene65003:intron 40.0%
CAAAGGGAGGAAAATCAAAG+TGG - chr8.4:39719287-39719306 MS.gene65003:CDS 40.0%
CACTAGATGGAGTAAGTTCA+TGG + chr8.4:39717799-39717818 None:intergenic 40.0%
CAGTATGTATGCAACAAGCA+GGG - chr8.4:39717626-39717645 MS.gene65003:intron 40.0%
CATGCTAGCCAAAAAAACGT+GGG - chr8.4:39719561-39719580 MS.gene65003:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG - chr8.4:39718348-39718367 MS.gene65003:intron 40.0%
GACGTGGTAGAAGGATTAAA+GGG - chr8.4:39719678-39719697 MS.gene65003:CDS 40.0%
GGTGAAGATGATGAAAGTCA+AGG - chr8.4:39717305-39717324 MS.gene65003:intron 40.0%
GTGGAGGAAAAAGAAGTGAA+GGG - chr8.4:39718927-39718946 MS.gene65003:intron 40.0%
GTTCACTACAGACCCAAAAA+GGG - chr8.4:39717737-39717756 MS.gene65003:intron 40.0%
TACCTGCGTGACAATTTCTT+TGG - chr8.4:39718630-39718649 MS.gene65003:intron 40.0%
TAGTTAAAGCGAGGTTGTCA+AGG - chr8.4:39719704-39719723 MS.gene65003:CDS 40.0%
TCATGCTAGCCAAAAAAACG+TGG - chr8.4:39719560-39719579 MS.gene65003:CDS 40.0%
TGAGGCTGCTGAAATCTATA+CGG - chr8.4:39718851-39718870 MS.gene65003:intron 40.0%
TGGCAGGATAAGAACATAGA+CGG - chr8.4:39719844-39719863 MS.gene65003:CDS 40.0%
TGGCTATCATGCTGAGATAT+GGG + chr8.4:39719247-39719266 None:intergenic 40.0%
TGTGGAGGAAAAAGAAGTGA+AGG - chr8.4:39718926-39718945 MS.gene65003:intron 40.0%
TGTTCACTACAGACCCAAAA+AGG - chr8.4:39717736-39717755 MS.gene65003:intron 40.0%
TTGGCTATCATGCTGAGATA+TGG + chr8.4:39719248-39719267 None:intergenic 40.0%
! AATGAAGGTCATGGTAGTGA+AGG - chr8.4:39717395-39717414 MS.gene65003:intron 40.0%
! AGTGAAGGTCATGGTAATGA+AGG - chr8.4:39717380-39717399 MS.gene65003:intron 40.0%
! AGTGCTTGCAGAACATTTTC+TGG + chr8.4:39719209-39719228 None:intergenic 40.0%
! ATCCTTCTACCACGTCTTTT+TGG + chr8.4:39719674-39719693 None:intergenic 40.0%
! ATCCTTCTGCCATGTCTTTT+TGG + chr8.4:39719369-39719388 None:intergenic 40.0%
! CCATCTGTTACAACTGCTTT+TGG + chr8.4:39718351-39718370 None:intergenic 40.0%
! TGATGATGTAGTTGTTGGTG+AGG - chr8.4:39717439-39717458 MS.gene65003:intron 40.0%
! TGTAGTTGTTGGTGAGGAAA+TGG - chr8.4:39717445-39717464 MS.gene65003:intron 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG - chr8.4:39717450-39717469 MS.gene65003:intron 40.0%
!! GACGATAGTTCTGATGAAAC+TGG - chr8.4:39717227-39717246 MS.gene65003:CDS 40.0%
!! GATAGTTCTGATGAAACTGG+AGG - chr8.4:39717230-39717249 MS.gene65003:CDS 40.0%
!!! ATCCTTCTCCCACGTTTTTT+TGG + chr8.4:39719572-39719591 None:intergenic 40.0%
!!! ATCCTTCTCCCGTGTTTTTT+TGG + chr8.4:39719267-39719286 None:intergenic 40.0%
!!! CTCATATGTTTTGGTAACCC+AGG + chr8.4:39718586-39718605 None:intergenic 40.0%
AAACACGGGAGAAGGATCAA+AGG - chr8.4:39719270-39719289 MS.gene65003:CDS 45.0%
AACACGGGAGAAGGATCAAA+GGG - chr8.4:39719271-39719290 MS.gene65003:CDS 45.0%
AGAGGAATGTGGATCAGTTG+AGG + chr8.4:39718062-39718081 None:intergenic 45.0%
AGCCAAAAAAACACGGGAGA+AGG - chr8.4:39719262-39719281 MS.gene65003:CDS 45.0%
AGCCAAAAAAACGTGGGAGA+AGG - chr8.4:39719567-39719586 MS.gene65003:CDS 45.0%
AGCCAAAAAGACATGGCAGA+AGG - chr8.4:39719364-39719383 MS.gene65003:CDS 45.0%
ATGGCAGAAGGATCAAAGAG+AGG - chr8.4:39719376-39719395 MS.gene65003:CDS 45.0%
CACCAAAGAAATTGTCACGC+AGG + chr8.4:39718635-39718654 None:intergenic 45.0%
CAGAATTCTCAAGCGAATGC+AGG - chr8.4:39717203-39717222 MS.gene65003:CDS 45.0%
CAGATGAGTTGTTAGCACAG+GGG + chr8.4:39718817-39718836 None:intergenic 45.0%
CTGCGTGACAATTTCTTTGG+TGG - chr8.4:39718633-39718652 MS.gene65003:intron 45.0%
GAAAAGAAGAACGTGTGGTG+AGG - chr8.4:39719915-39719934 MS.gene65003:CDS 45.0%
GCAGATGAGTTGTTAGCACA+GGG + chr8.4:39718818-39718837 None:intergenic 45.0%
GCAGCAGACAAAATCACCAA+CGG + chr8.4:39718220-39718239 None:intergenic 45.0%
GCAGTATGTATGCAACAAGC+AGG - chr8.4:39717625-39717644 MS.gene65003:intron 45.0%
GCAGTTGTAACAGATGGTGA+CGG - chr8.4:39718354-39718373 MS.gene65003:intron 45.0%
GGAGGCAATGAAAGTGATGA+TGG - chr8.4:39717248-39717267 MS.gene65003:CDS 45.0%
GGATACATTGTGGCTCAGAA+GGG - chr8.4:39717917-39717936 MS.gene65003:intron 45.0%
GGTGATGAAAGTGAAGGTCA+TGG - chr8.4:39717371-39717390 MS.gene65003:intron 45.0%
TAACCCAGGGATTGTTCTCA+AGG + chr8.4:39718572-39718591 None:intergenic 45.0%
TAGCACAGGGGATGAAAACT+TGG + chr8.4:39718805-39718824 None:intergenic 45.0%
TCTGCATTGTCTTGAACGTG+AGG - chr8.4:39718833-39718852 MS.gene65003:intron 45.0%
TGCAGATGAGTTGTTAGCAC+AGG + chr8.4:39718819-39718838 None:intergenic 45.0%
TGCCAAAAAGACGTGGTAGA+AGG - chr8.4:39719669-39719688 MS.gene65003:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG - chr8.4:39718377-39718396 MS.gene65003:intron 45.0%
TTGGCTAGCATGATGAGACA+TGG + chr8.4:39719553-39719572 None:intergenic 45.0%
TTTCAAACGTCCGTCATCAG+TGG + chr8.4:39718098-39718117 None:intergenic 45.0%
! AAGGGTGGATATCTTGGTGT+TGG - chr8.4:39717935-39717954 MS.gene65003:intron 45.0%
! ATCCTTTTCCCACGTCTTTC+TGG + chr8.4:39719470-39719489 None:intergenic 45.0%
! GGTCATGGTAATGAAGGTCA+TGG - chr8.4:39717386-39717405 MS.gene65003:intron 45.0%
! TAGGGCATCATGGAGACTAA+TGG - chr8.4:39719945-39719964 MS.gene65003:CDS 45.0%
!! AGATGGTGACGGTTCTATGA+GGG - chr8.4:39718365-39718384 MS.gene65003:intron 45.0%
!! AGGGTGGATATCTTGGTGTT+GGG - chr8.4:39717936-39717955 MS.gene65003:intron 45.0%
!! AGTGATGATGGTGGTTGTTC+TGG - chr8.4:39717260-39717279 MS.gene65003:intron 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG - chr8.4:39718263-39718282 MS.gene65003:CDS 45.0%
!! GAAAGGTGTTGCAATGAGTG+TGG - chr8.4:39718908-39718927 MS.gene65003:intron 45.0%
!! GGCAATGAAAGTGATGATGG+TGG - chr8.4:39717251-39717270 MS.gene65003:CDS 45.0%
!!! TGAAGAGTTTTGGGGTGACT+TGG - chr8.4:39718533-39718552 MS.gene65003:intron 45.0%
AGCCAGAAAGACGTGGGAAA+AGG - chr8.4:39719465-39719484 MS.gene65003:CDS 50.0%
AGTCTCCATGATGCCCTAAC+AGG + chr8.4:39719943-39719962 None:intergenic 50.0%
CATAGACGATGACGCGTACT+TGG + chr8.4:39718411-39718430 None:intergenic 50.0%
CATGCTAGCCAGAAAGACGT+GGG - chr8.4:39719459-39719478 MS.gene65003:CDS 50.0%
GAGTGCTTGCCAAAAAGACG+TGG - chr8.4:39719662-39719681 MS.gene65003:CDS 50.0%
GCCTGCTAGCCAAAAAGACA+TGG - chr8.4:39719357-39719376 MS.gene65003:CDS 50.0%
GCTCAGAAGGGTGGATATCT+TGG - chr8.4:39717929-39717948 MS.gene65003:intron 50.0%
GGATAAGAACATAGACGGCG+AGG - chr8.4:39719849-39719868 MS.gene65003:CDS 50.0%
GGGATACATTGTGGCTCAGA+AGG - chr8.4:39717916-39717935 MS.gene65003:intron 50.0%
TACATTGTGGCTCAGAAGGG+TGG - chr8.4:39717920-39717939 MS.gene65003:intron 50.0%
TAGTGAACACGAAGCCTAGC+TGG + chr8.4:39717725-39717744 None:intergenic 50.0%
TGGCTAGCAGGCTGAGATTT+GGG + chr8.4:39719349-39719368 None:intergenic 50.0%
TGGCTAGCATGCTGAGACAT+GGG + chr8.4:39719450-39719469 None:intergenic 50.0%
TTGGCTAGCAGGCTGAGATT+TGG + chr8.4:39719350-39719369 None:intergenic 50.0%
! AGGTGTTGCAATGAGTGTGG+AGG - chr8.4:39718911-39718930 MS.gene65003:intron 50.0%
! ATGGCCTTGAGAACAATCCC+TGG - chr8.4:39718565-39718584 MS.gene65003:intron 50.0%
! CTCGTACAAAGTGTCCAGCT+AGG - chr8.4:39717708-39717727 MS.gene65003:intron 50.0%
! TGGCCTTGAGAACAATCCCT+GGG - chr8.4:39718566-39718585 MS.gene65003:intron 50.0%
!! CAGATGGTGACGGTTCTATG+AGG - chr8.4:39718364-39718383 MS.gene65003:intron 50.0%
!! GATAGTTCTGATGGGAGTCG+TGG - chr8.4:39717170-39717189 MS.gene65003:CDS 50.0%
!! GGTGACTTGGTGAGGGAAAA+TGG - chr8.4:39718546-39718565 MS.gene65003:intron 50.0%
!!! AGTTTTGGGGTGACTTGGTG+AGG - chr8.4:39718538-39718557 MS.gene65003:intron 50.0%
!!! GCCATGTCTTTTTGGCTAGC+AGG + chr8.4:39719361-39719380 None:intergenic 50.0%
!!! GTTTTGGGGTGACTTGGTGA+GGG - chr8.4:39718539-39718558 MS.gene65003:intron 50.0%
ACGGGAGAAGGATCAAAGGG+AGG - chr8.4:39719274-39719293 MS.gene65003:CDS 55.0%
CGCGTCATCGTCTATGTGCT+TGG - chr8.4:39718415-39718434 MS.gene65003:intron 55.0%
CTGGCTAGCATGCTGAGACA+TGG + chr8.4:39719451-39719470 None:intergenic 55.0%
GCATGCTAGCCAGAAAGACG+TGG - chr8.4:39719458-39719477 MS.gene65003:CDS 55.0%
! AGGCACCTGTTAGGGCATCA+TGG - chr8.4:39719935-39719954 MS.gene65003:CDS 55.0%
! GTGTGGTGAGGCACCTGTTA+GGG - chr8.4:39719927-39719946 MS.gene65003:CDS 55.0%
!! TGGTGACGGTTCTATGAGGG+AGG - chr8.4:39718368-39718387 MS.gene65003:intron 55.0%
! CGTGTGGTGAGGCACCTGTT+AGG - chr8.4:39719926-39719945 MS.gene65003:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 39717116 39720008 39717116 ID=MS.gene65003
chr8.4 mRNA 39717116 39720008 39717116 ID=MS.gene65003.t1;Parent=MS.gene65003
chr8.4 exon 39718982 39720008 39718982 ID=MS.gene65003.t1.exon1;Parent=MS.gene65003.t1
chr8.4 CDS 39718982 39720008 39718982 ID=cds.MS.gene65003.t1;Parent=MS.gene65003.t1
chr8.4 exon 39718060 39718334 39718060 ID=MS.gene65003.t1.exon2;Parent=MS.gene65003.t1
chr8.4 CDS 39718060 39718334 39718060 ID=cds.MS.gene65003.t1;Parent=MS.gene65003.t1
chr8.4 exon 39717971 39718027 39717971 ID=MS.gene65003.t1.exon3;Parent=MS.gene65003.t1
chr8.4 CDS 39717971 39718027 39717971 ID=cds.MS.gene65003.t1;Parent=MS.gene65003.t1
chr8.4 exon 39717116 39717274 39717116 ID=MS.gene65003.t1.exon4;Parent=MS.gene65003.t1
chr8.4 CDS 39717116 39717274 39717116 ID=cds.MS.gene65003.t1;Parent=MS.gene65003.t1
Gene Sequence

>MS.gene65003

ATGATTGTTGGGAGTCAAGGTAAATCTACTGAGAATGTTGAACAAAATGTAGATGATAGTTCTGATGGGAGTCGTGGTAATTTTACTCAGAATTCTCAAGCGAATGCAGGTGACGATAGTTCTGATGAAACTGGAGGCAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGTTGGTGATAAAGGTGAAGATGATGAAAGTCAAGGTTATGAAAGTGAAAGTGATGAAAGTGAAGGTGATGAAACTGAAGGTGATGAAAGTGAAGGTCATGGTAATGAAGGTCATGGTAGTGAAGGTGATAAGAATTTAGATGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAATGGAAATGGAATTTGCGGGTATTGATGAAGCTTACGATTTTTATTTTAAGTACTGTAAGTGTAAAGGTTTTGCTGTTAAGAAGAGTGATATTAGGCGCAATGTTAACGATGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTCAGATAGGCAAAGAGATCATCGACGTCTCACTCGTACAAAGTGTCCAGCTAGGCTTCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTATGTATATTTTTGAAGAGAGTCACAACCATGAACTTACTCCATCTAGTGTTGTGCATTTACACCTTGTTTATCGGCAAATATTCGAGGCAGATAAAGCACAAATTGATGGTCTTCAATTACACGGAATAAGAACTTGTCATATAATGGGATACATTGTGGCTCAGAAGGGTGGATATCTTGGTGTTGGGTTCACTAAGAAAGATTTGTACAATTACTTTGACAAAAAAATGCGTGTTGTTATTAAGGATAGTGATGTTTCAGCTGCTTTAAACTATCTGAATGTTAAATCCTCAACTGATCCACATTCCTCTTGTCAATATTCTACCACTGATGACGGACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGTAGATCAGATTATTTCTGTTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACAACTATCCGTTGGTGATTTTGTCTGCTGCAACCACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATAGAAACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGACGGTTCTATGAGGGAGGCGATAAAGGCAGTTTTACCAAGTACGCGTCATCGTCTATGTGCTTGGCATCTGAACAAGAATGTTGTTGACAATGTTAACAATTCAGCTTTTTTGGATGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGAAGGAATTTGAAGAGTTTTGGGGTGACTTGGTGAGGGAAAATGGCCTTGAGAACAATCCCTGGGTTACCAAAACATATGAGAACAAGGAATTGTGGGCAACTGCATACCTGCGTGACAATTTCTTTGGTGGTAGAAGAACTACGACTCAATGTGAGTCTGTTAATAAAATCATAAAGAGTTATGTTAGGAAGAAAGGAAGCATCTTTGAATTTCTGTATAATTTTGATGAGGCAATGAGAGGCTACATAAATAATAAACTTGTAGCTAATTTTAAATCCAAGTTTTCATCCCCTGTGCTAACAACTCATCTGCATTGTCTTGAACGTGAGGCTGCTGAAATCTATACGGCAAAGATCTTTCAAGAAGTGAAAGAAGAGATTATGAAAGGTGTTGCAATGAGTGTGGAGGAAAAAGAAGTGAAGGGTGACTTGAGAACAATGAATTTGACAAAATATATTGAGGAAGGTGTTTATGAAATTTTATACGATGAGTCGATGTCAGCAATTCAGTGTTCGTGCAAGAAATTTGAATCTCGAGAGGTTCCATGCTCCCATATTTTTTTTTGTTGAAGGAAGAACGCGTTGAACACATTCCAGAATATTTGATTATATTGCGTTGGACAAAAAAGGTGAAGATTGATTTGTAAGAATGTTCAAACTGTGGCAGCACGCAACATGATGCCAGAAAATGTTCTGCAAGCACTGAACATCTTTCTGTACCCATATCTCAGCATGATAGCCAAAAAAACACGGGAGAAGGATCAAAGGGAGGAAAATCAAAGTGGAAGACATGTTCTGCAAGCACTGAACATATTTTTGTGCCCAAATCTCAGCCTGCTAGCCAAAAAGACATGGCAGAAGGATCAAAGAGAGGAAATCAAAGAGAAAGAATATTTTTGCAAGCAATGAACATCTTTCTGTGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAAAAGGATCAAAGAGAGTGAAATCAAAGAGAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGTGTCCATGTCTCATCATGCTAGCCAAAAAAACGTGGGAGAAGGATCAAAGAGAGTGAAATCAAAGAAAAAGACTTGTTCTGCAAGCAATCAACATATTTATGCGCTTATGTCTCAGAGTGCTTGCCAAAAAGACGTGGTAGAAGGATTAAAGGGATGTAGTTAAAGCGAGGTTGTCAAGGATTCACAAAGATCCGTGAATATGAACGTAAGTACCAACAATGTGTTTAAATATAGGAATGTAAATGACTTACTTACTGCACAAGTAATGTTCACCTTTTGATTAACTTCTCAATTTTTGGCAGGATAAGAACATAGACGGCGAGGATTATGTGATGATTCTTGAACAAGCCAAAGTAGCACAGAAAAGGAAAAGAAGAACGTGTGGTGAGGCACCTGTTAGGGCATCATGGAGACTAATGGCACTGAATTTAAGTTCAATCAAATTAATCCCATATTCTTGA

Protein sequence

>MS.gene65003.t1

MIVGSQGKSTENVEQNVDDSSDGSRGNFTQNSQANAGDDSSDETGGNESDDGGCSGDYSVGDKGEDDESQGYESESDESEGDETEGDESEGHGNEGHGSEGDKNLDEDDDVVVGEEMVRINSLTAEGIMEMEFAGIDEAYDFYFKYCKCKGFAVKKSDIRRNVNDEIVMRQYVCNKQGFREKKHLSRSDRQRDHRRLTRTKCPARLRVHYRPKKGRYVMYIFEESHNHELTPSSVVHLHLVYRQIFEADKAQIDGLQLHGIRTCHIMGYIVAQKGGYLGVGFTKKDLYNYFDKKMRVVIKDSDVSAALNYLNVKSSTDPHSSCQYSTTDDGRLKCLFWADGTTNFKSKFSSPVLTTHLHCLEREAAEIYTAKIFQEVKEEIMKGVAMSVEEKEVKGDLRTMNLTKYIEEGVYEILYDESMSAIQCSCKKFESREEERVEHIPEYLIILRWTKKDKNIDGEDYVMILEQAKVAQKRKRRTCGEAPVRASWRLMALNLSSIKLIPYS