AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65789.t1 MTR_3g017500 97.000 400 9 1 1 397 1 400 0.0 794
MS.gene65789.t1 MTR_3g017500 90.428 397 11 1 1 397 1 370 0.0 723
MS.gene65789.t1 MTR_8g038400 74.648 355 89 1 44 397 13 367 0.0 545
MS.gene65789.t1 MTR_8g088320 47.309 353 147 5 44 395 6 320 1.25e-114 337
MS.gene65789.t1 MTR_2g030230 46.000 350 151 4 48 397 18 329 9.03e-108 320
MS.gene65789.t1 MTR_2g011590 45.283 159 78 2 239 393 3 156 1.11e-37 134
MS.gene65789.t1 MTR_3g067585 44.444 162 81 2 236 393 1 157 1.93e-37 133
MS.gene65789.t1 MTR_8g107340 41.250 160 93 1 236 395 17 175 4.15e-37 133
MS.gene65789.t1 MTR_2g027100 45.860 157 84 1 236 391 1 157 2.33e-34 125
MS.gene65789.t1 MTR_1g031650 44.231 156 85 2 239 393 5 159 6.52e-34 124
MS.gene65789.t1 MTR_6g069470 38.728 173 102 2 223 395 3 171 2.55e-31 117
MS.gene65789.t1 MTR_4g084280 39.394 165 91 2 236 396 1 160 1.12e-30 115
MS.gene65789.t1 MTR_6g080710 43.478 115 64 1 51 165 19 132 7.23e-24 100
MS.gene65789.t1 MTR_2g080950 41.803 122 63 3 51 172 19 132 1.88e-23 102
MS.gene65789.t1 MTR_8g464390 44.248 113 55 3 51 163 19 123 1.04e-22 99.8
MS.gene65789.t1 MTR_1g031650 42.623 122 69 1 272 393 2 122 6.29e-22 91.3
MS.gene65789.t1 MTR_8g100100 39.583 144 61 4 51 169 503 645 2.66e-20 93.6
MS.gene65789.t1 MTR_8g100100 39.583 144 61 4 51 169 497 639 2.78e-20 93.6
MS.gene65789.t1 MTR_7g020860 39.552 134 56 3 54 163 508 640 6.71e-19 89.4
MS.gene65789.t1 MTR_8g067090 51.429 70 33 1 54 123 16 84 5.30e-18 85.5
MS.gene65789.t1 MTR_8g471120 51.429 70 33 1 54 123 16 84 5.30e-18 85.5
MS.gene65789.t1 MTR_7g020860 50.575 87 40 2 51 135 505 590 5.70e-18 86.3
MS.gene65789.t1 MTR_8g067080 51.429 70 33 1 54 123 16 84 9.75e-18 84.7
MS.gene65789.t1 MTR_8g471110 51.429 70 33 1 54 123 16 84 9.75e-18 84.7
MS.gene65789.t1 MTR_8g067080 51.429 70 33 1 54 123 16 84 1.00e-17 84.7
MS.gene65789.t1 MTR_1g069000 48.052 77 39 1 50 126 6 81 1.04e-17 85.1
MS.gene65789.t1 MTR_7g099830 48.052 77 39 1 50 126 6 81 3.58e-17 83.2
MS.gene65789.t1 MTR_3g098680 35.000 140 66 3 48 163 497 635 5.12e-17 83.6
MS.gene65789.t1 MTR_4g074170 41.818 110 55 5 32 133 457 565 4.27e-15 77.8
MS.gene65789.t1 MTR_1g008950 36.264 91 56 2 241 329 4 94 5.11e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65789.t1 AT3G07940 66.410 390 116 4 11 397 8 385 0.0 525
MS.gene65789.t1 AT4G05330 48.571 350 152 4 48 397 15 336 4.15e-117 344
MS.gene65789.t1 AT4G05330 48.571 350 152 4 48 397 15 336 4.15e-117 344
MS.gene65789.t1 AT4G21160 48.286 350 154 4 48 397 15 337 7.81e-117 343
MS.gene65789.t1 AT4G21160 48.286 350 154 4 48 397 15 337 7.81e-117 343
MS.gene65789.t1 AT4G21160 48.286 350 154 4 48 397 15 337 7.81e-117 343
MS.gene65789.t1 AT4G21160 48.286 350 154 4 48 397 15 337 7.81e-117 343
MS.gene65789.t1 AT3G07940 58.491 265 95 4 11 272 8 260 3.52e-105 311
MS.gene65789.t1 AT4G05330 48.607 323 138 4 75 397 7 301 3.27e-104 310
MS.gene65789.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.97e-37 133
MS.gene65789.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.97e-37 133
MS.gene65789.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.97e-37 133
MS.gene65789.t1 AT1G66360 42.593 162 92 1 236 396 1 162 1.10e-36 132
MS.gene65789.t1 AT1G70800 42.073 164 94 1 228 391 2 164 1.95e-36 131
MS.gene65789.t1 AT1G73580 42.500 160 91 1 236 395 4 162 2.58e-36 130
MS.gene65789.t1 AT1G70810 41.139 158 92 1 236 393 1 157 4.44e-34 124
MS.gene65789.t1 AT5G37740 41.875 160 91 1 236 393 1 160 1.49e-33 123
MS.gene65789.t1 AT2G01540 42.484 153 87 1 240 391 6 158 6.01e-33 122
MS.gene65789.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.47e-32 119
MS.gene65789.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.47e-32 119
MS.gene65789.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.47e-32 119
MS.gene65789.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.47e-32 119
MS.gene65789.t1 AT1G48590 39.024 164 91 2 236 395 6 164 5.71e-32 119
MS.gene65789.t1 AT1G48590 39.024 164 91 2 236 395 6 164 5.71e-32 119
MS.gene65789.t1 AT1G48590 39.024 164 91 2 236 395 37 195 1.02e-31 119
MS.gene65789.t1 AT1G23140 37.888 161 99 1 236 396 1 160 3.02e-31 117
MS.gene65789.t1 AT3G17980 36.585 164 95 2 236 395 13 171 5.46e-31 117
MS.gene65789.t1 AT5G37740 39.412 170 91 2 236 393 1 170 1.30e-30 115
MS.gene65789.t1 AT5G54310 38.235 170 89 3 51 212 19 180 7.80e-25 106
MS.gene65789.t1 AT3G17660 40.708 113 59 2 51 163 19 123 6.06e-24 98.2
MS.gene65789.t1 AT3G17660 40.708 113 59 2 51 163 19 123 1.21e-23 98.6
MS.gene65789.t1 AT3G17660 40.708 113 59 2 51 163 19 123 3.66e-23 97.8
MS.gene65789.t1 AT1G70790 43.697 119 66 1 274 391 3 121 2.98e-22 92.4
MS.gene65789.t1 AT5G13300 46.789 109 52 3 29 135 485 589 1.77e-19 91.3
MS.gene65789.t1 AT5G61980 40.146 137 57 3 51 163 501 636 1.05e-18 89.0
MS.gene65789.t1 AT2G35210 50.725 69 33 1 54 122 16 83 1.25e-17 84.0
MS.gene65789.t1 AT3G17660 37.931 116 48 4 51 163 19 113 1.73e-17 81.3
MS.gene65789.t1 AT2G35210 50.725 69 33 1 54 122 16 83 2.32e-17 83.6
MS.gene65789.t1 AT1G48590 29.570 186 78 4 226 395 15 163 2.47e-17 79.3
MS.gene65789.t1 AT5G46750 50.725 69 33 1 54 122 16 83 4.57e-17 82.8
MS.gene65789.t1 AT2G37550 46.753 77 40 1 50 126 6 81 9.98e-17 82.0
MS.gene65789.t1 AT2G37550 46.753 77 40 1 50 126 6 81 9.98e-17 82.0
MS.gene65789.t1 AT1G10870 40.000 130 57 5 59 169 478 605 1.14e-16 82.4
MS.gene65789.t1 AT4G17890 49.275 69 34 1 54 122 19 86 1.85e-16 80.9
MS.gene65789.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.58e-16 80.9
MS.gene65789.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.58e-16 80.9
MS.gene65789.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.58e-16 80.9
MS.gene65789.t1 AT4G17890 49.275 69 34 1 54 122 19 86 2.60e-16 80.5
MS.gene65789.t1 AT1G10870 38.519 135 57 5 59 169 478 610 4.26e-16 80.9
MS.gene65789.t1 AT1G60860 54.688 64 27 1 59 120 367 430 6.33e-15 77.0
MS.gene65789.t1 AT1G60860 54.688 64 27 1 59 120 307 370 7.23e-15 76.6
MS.gene65789.t1 AT1G60860 54.688 64 27 1 59 120 478 541 7.47e-15 77.0
MS.gene65789.t1 AT1G03370 37.778 90 55 1 243 331 3 92 9.88e-12 67.4
MS.gene65789.t1 AT1G03370 37.778 90 55 1 243 331 3 92 1.71e-11 66.6

Find 70 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATACTTACACCCATTT+TGG 0.186231 3.2:+8873838 None:intergenic
ATTAAGGTTAATGTGGTTAA+AGG 0.230072 3.2:-8871730 MS.gene65789:CDS
TGAATTTGTTGGATTGATTA+AGG 0.287189 3.2:-8871746 MS.gene65789:CDS
AGTCAATGCAGCTTGGAAAA+TGG 0.292719 3.2:-8870883 MS.gene65789:CDS
TCTTGCGTGGGATGGTATAA+AGG 0.303502 3.2:+8872550 None:intergenic
GTGGATCATCAGAGCCAAAA+TGG 0.335283 3.2:-8873852 MS.gene65789:CDS
AGAACAATTTAAATCCTGTT+TGG 0.340329 3.2:-8871518 MS.gene65789:CDS
TCAATGGAAGAATTCGGTTT+TGG 0.341563 3.2:+8872768 None:intergenic
ACGAACATACCTTAGATATA+TGG 0.355404 3.2:+8873005 None:intergenic
GCAGGTATGGTTGAATTTGT+TGG 0.378256 3.2:-8871757 MS.gene65789:CDS
CCTTATGTCATCCTTTCTCT+TGG 0.379448 3.2:-8871670 MS.gene65789:CDS
AACATCAGGTCTTCAAGTCT+TGG 0.381673 3.2:-8873076 MS.gene65789:intron
GTCAATGCAGCTTGGAAAAT+GGG 0.386273 3.2:-8870882 MS.gene65789:CDS
CCTAGGAGTCCATATATCTA+AGG 0.390014 3.2:-8873014 MS.gene65789:intron
TATCTCATCTATTGAGTAAG+AGG 0.392319 3.2:+8870728 None:intergenic
TCTCAGGAATTGACAGCATT+AGG 0.392637 3.2:+8871487 None:intergenic
AGAGAGCGATGGATGTTATC+TGG 0.401047 3.2:-8874076 MS.gene65789:intron
CATCCTTTCTCTTGGTCACC+AGG 0.414383 3.2:-8871662 MS.gene65789:intron
CGCTCCTCAATGGAAGAATT+CGG 0.431409 3.2:+8872762 None:intergenic
GGCTATCGTTTCGAAACAGC+TGG 0.433424 3.2:-8872436 MS.gene65789:CDS
ATTAGGCTTTCATTCCAAAC+AGG 0.437169 3.2:+8871504 None:intergenic
AAACAACTAGAAATCGTATT+GGG 0.442080 3.2:-8872457 MS.gene65789:CDS
AGTCGATTCATTGGTCAACT+TGG 0.444047 3.2:-8872850 MS.gene65789:CDS
TTAAGAGGAGGGATGTTCTC+AGG 0.446313 3.2:+8871471 None:intergenic
CAAACAACTAGAAATCGTAT+TGG 0.459695 3.2:-8872458 MS.gene65789:CDS
TTTATTTGCATCAAGTGCTC+TGG 0.459972 3.2:-8873049 MS.gene65789:CDS
GGAATAATATCTCTTGAAGA+AGG 0.465885 3.2:-8870827 MS.gene65789:CDS
TTTACTGTTATAGGCAGGTA+TGG 0.466561 3.2:-8871770 MS.gene65789:intron
GCTTGAGGAACTGCTCTGAC+TGG 0.472926 3.2:+8872517 None:intergenic
GACAATCTGATGCGTCAAGC+AGG 0.474603 3.2:-8873895 MS.gene65789:CDS
AAAATCAGAGCGCTCCTCAA+TGG 0.477617 3.2:+8872752 None:intergenic
AGACGAACAAGTCGATTCAT+TGG 0.483436 3.2:-8872859 MS.gene65789:CDS
TGAAGAAGGGAAAGTGAGAC+AGG 0.489048 3.2:-8870813 MS.gene65789:CDS
CTTGCGTGGGATGGTATAAA+GGG 0.496671 3.2:+8872551 None:intergenic
TGTCACTGAATCTAGATGAA+TGG 0.499000 3.2:-8872884 MS.gene65789:CDS
CCAAGAGAAAGGATGACATA+AGG 0.500819 3.2:+8871670 None:intergenic
TGACTTTGAGAATTTAAACT+TGG 0.501348 3.2:+8874100 None:intergenic
CCTTAGATATATGGACTCCT+AGG 0.508201 3.2:+8873014 None:intergenic
GATTCATTGGTCAACTTGGG+TGG 0.513627 3.2:-8872846 MS.gene65789:CDS
TCACTATATCTCTGATAGCT+AGG 0.520516 3.2:+8871701 None:intergenic
CAAGAGAAAGGATGACATAA+GGG 0.522273 3.2:+8871671 None:intergenic
GTCGATTCATTGGTCAACTT+GGG 0.529688 3.2:-8872849 MS.gene65789:CDS
GACAATACACTTGTGAAAGA+TGG 0.535420 3.2:-8870848 MS.gene65789:CDS
TGGATCATCAGAGCCAAAAT+GGG 0.539189 3.2:-8873851 MS.gene65789:CDS
ATCATGGAGTCAATGCAGCT+TGG 0.540788 3.2:-8870890 MS.gene65789:CDS
ATATGAGAAATCATCAATCA+TGG 0.553492 3.2:-8870906 MS.gene65789:CDS
TCACCTGGTGACCAAGAGAA+AGG 0.560168 3.2:+8871659 None:intergenic
TCTGAAATCAATGGTATACC+AGG 0.560420 3.2:-8876135 MS.gene65789:intron
CAGTGCAAAAGAGATCATAA+AGG 0.562906 3.2:+8874128 None:intergenic
GATCACTAGGTCCACAGGAA+AGG 0.571277 3.2:-8873921 MS.gene65789:intron
GGATGAAATTGTTCTTGCGT+GGG 0.575607 3.2:+8872538 None:intergenic
AACAAGTTCTGTGCTGATTG+TGG 0.576035 3.2:-8873871 MS.gene65789:CDS
CTTCCGATCACTAGGTCCAC+AGG 0.578366 3.2:-8873926 MS.gene65789:intron
AAAACCGAATTCTTCCATTG+AGG 0.580396 3.2:-8872766 MS.gene65789:CDS
GCTATCGTTTCGAAACAGCT+GGG 0.585756 3.2:-8872435 MS.gene65789:CDS
TGGATTGATTAAGGTTAATG+TGG 0.585859 3.2:-8871737 MS.gene65789:CDS
TTGTGGAGGATTGTAGCTTG+AGG 0.590164 3.2:+8872502 None:intergenic
GAATAATATCTCTTGAAGAA+GGG 0.592669 3.2:-8870826 MS.gene65789:CDS
TACAAAGAAGAGTAACTCGT+TGG 0.593650 3.2:-8872387 MS.gene65789:intron
TGGATGAAATTGTTCTTGCG+TGG 0.594858 3.2:+8872537 None:intergenic
AGATTGTCTAACCTTTCCTG+TGG 0.600164 3.2:+8873910 None:intergenic
CTCAAAGTCAAAGAGAGCGA+TGG 0.600889 3.2:-8874087 MS.gene65789:CDS
GGGACAAATCAAATTCTCCT+CGG 0.602338 3.2:+8872571 None:intergenic
GAAATTGTTCTTGCGTGGGA+TGG 0.606077 3.2:+8872542 None:intergenic
TCTGGTATACACAGAAGCCT+AGG 0.615657 3.2:-8873031 MS.gene65789:CDS
ACAATCTGATGCGTCAAGCA+GGG 0.621759 3.2:-8873894 MS.gene65789:CDS
CTTGGAAAATGGGTAGCAAG+TGG 0.649585 3.2:-8870872 MS.gene65789:CDS
AGGCTACAAAATGTTGAGAG+AGG 0.650552 3.2:-8870779 MS.gene65789:CDS
CTATCGTTTCGAAACAGCTG+GGG 0.668346 3.2:-8872434 MS.gene65789:CDS
TGAGACAGGAAATCTCATTG+AGG 0.699747 3.2:-8870799 MS.gene65789:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAAAAAAATAGAAG+TGG + chr3.2:8871162-8871181 None:intergenic 10.0%
!!! TTTTGAATTTTAAGTTAATT+GGG - chr3.2:8871836-8871855 MS.gene65789:intron 10.0%
!!! TTTTTGAATTTTAAGTTAAT+TGG - chr3.2:8871835-8871854 MS.gene65789:intron 10.0%
!! AAAATGTATCAAAACTAAAT+TGG + chr3.2:8873337-8873356 None:intergenic 15.0%
!! AAACAAAAAATATATACTAC+AGG - chr3.2:8874868-8874887 MS.gene65789:intron 15.0%
!! AAATAACTTATACATAAACA+AGG + chr3.2:8873425-8873444 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr3.2:8871465-8871484 None:intergenic 15.0%
!! AACAAAAAATATATACTACA+GGG - chr3.2:8874869-8874888 MS.gene65789:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr3.2:8871464-8871483 MS.gene65789:intron 15.0%
!! ACAGATAATTTATTATAGAT+AGG + chr3.2:8872131-8872150 None:intergenic 15.0%
!! GATAAATGTAACAATTAAAA+GGG + chr3.2:8872852-8872871 None:intergenic 15.0%
!! TACTAAAACAAAATGTTAAA+AGG - chr3.2:8874946-8874965 MS.gene65789:intron 15.0%
!! TGATAAATGTAACAATTAAA+AGG + chr3.2:8872853-8872872 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr3.2:8871338-8871357 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr3.2:8871441-8871460 None:intergenic 15.0%
!!! TCGACTTTTTTTTTTATATA+AGG + chr3.2:8872525-8872544 None:intergenic 15.0%
!!! TCTTTTTAATTTTATTATCC+AGG - chr3.2:8874270-8874289 MS.gene65789:intron 15.0%
!!! TTTGAATTTTAAGTTAATTG+GGG - chr3.2:8871837-8871856 MS.gene65789:intron 15.0%
!! AAAAGAAAAGTGAAAAACAA+TGG + chr3.2:8874256-8874275 None:intergenic 20.0%
!! AAAATAAAAAAATTTGTCCG+AGG + chr3.2:8873655-8873674 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr3.2:8871455-8871474 MS.gene65789:intron 20.0%
!! AAATTAAACATGATCTATGA+GGG - chr3.2:8872100-8872119 MS.gene65789:intron 20.0%
!! AAATTAAATGTCTCAATTGT+AGG - chr3.2:8872729-8872748 MS.gene65789:intron 20.0%
!! AACTATCCTATTAATCTATA+AGG + chr3.2:8871890-8871909 None:intergenic 20.0%
!! AATAATTAAGAGAAAGAGAA+TGG + chr3.2:8871498-8871517 None:intergenic 20.0%
!! AATAGAACAAAAAAATTGCA+GGG + chr3.2:8874668-8874687 None:intergenic 20.0%
!! AATTAAATGTCTCAATTGTA+GGG - chr3.2:8872730-8872749 MS.gene65789:intron 20.0%
!! ACTGAAAGAGAAAAAAAATA+GGG - chr3.2:8874969-8874988 MS.gene65789:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr3.2:8871378-8871397 None:intergenic 20.0%
!! ATAATAAATTATCTGTGATC+AGG - chr3.2:8872135-8872154 MS.gene65789:intron 20.0%
!! ATTCATATTTATCTTGAGAT+AGG - chr3.2:8874227-8874246 MS.gene65789:intron 20.0%
!! ATTTCATGTTTGATAAGATT+TGG - chr3.2:8875859-8875878 MS.gene65789:intron 20.0%
!! TAATAGAACAAAAAAATTGC+AGG + chr3.2:8874669-8874688 None:intergenic 20.0%
!! TACAAATGCTTAAAAACAAA+CGG + chr3.2:8872551-8872570 None:intergenic 20.0%
!! TAGATATATTGTATTGTTGT+CGG - chr3.2:8871040-8871059 MS.gene65789:intron 20.0%
!! TTCAGTGTAATTAAATTTGT+CGG + chr3.2:8871735-8871754 None:intergenic 20.0%
!!! AATTTTTGTTCTGAATTTTG+AGG - chr3.2:8871928-8871947 MS.gene65789:intron 20.0%
!!! ATTCAACTTACTATTTTAAG+AGG + chr3.2:8875442-8875461 None:intergenic 20.0%
!!! ATTTTTGTTCTGAATTTTGA+GGG - chr3.2:8871929-8871948 MS.gene65789:intron 20.0%
!!! TAATTTGTTTATCCAAACAT+GGG + chr3.2:8873379-8873398 None:intergenic 20.0%
!!! TCCATTTTCTTAAATATTAC+TGG + chr3.2:8872345-8872364 None:intergenic 20.0%
!!! TTAATTTGTTTATCCAAACA+TGG + chr3.2:8873380-8873399 None:intergenic 20.0%
!!! TTTTAGTACTTATGAAGTTA+TGG + chr3.2:8874934-8874953 None:intergenic 20.0%
!!! TTTTGAGTTTCTAACATATA+GGG + chr3.2:8874850-8874869 None:intergenic 20.0%
!!! TTTTTGAGTTTCTAACATAT+AGG + chr3.2:8874851-8874870 None:intergenic 20.0%
! AAACAACTAGAAATCGTATT+GGG - chr3.2:8874438-8874457 MS.gene65789:intron 25.0%
! ACATGATTTGACATGATTAT+AGG - chr3.2:8873985-8874004 MS.gene65789:intron 25.0%
! AGAACAATTTAAATCCTGTT+TGG - chr3.2:8875377-8875396 MS.gene65789:intron 25.0%
! ATAGACTAAAGCGAAAAAAT+AGG + chr3.2:8874697-8874716 None:intergenic 25.0%
! ATATGAGAAATCATCAATCA+TGG - chr3.2:8875989-8876008 MS.gene65789:intron 25.0%
! ATCAAATAACCAACATTATC+CGG - chr3.2:8872869-8872888 MS.gene65789:CDS 25.0%
! ATTAAGGTTAATGTGGTTAA+AGG - chr3.2:8875165-8875184 MS.gene65789:intron 25.0%
! ATTCATTACATCACTTTGAT+GGG + chr3.2:8870826-8870845 None:intergenic 25.0%
! CATCATTTGAAAAATAAGCA+TGG - chr3.2:8875482-8875501 MS.gene65789:intron 25.0%
! CTAAAGATGGATATATTACT+GGG + chr3.2:8874629-8874648 None:intergenic 25.0%
! GAAATTAAACATGATCTATG+AGG - chr3.2:8872099-8872118 MS.gene65789:intron 25.0%
! GAATAATATCTCTTGAAGAA+GGG - chr3.2:8876069-8876088 MS.gene65789:intron 25.0%
! GACTGAAAGAGAAAAAAAAT+AGG - chr3.2:8874968-8874987 MS.gene65789:intron 25.0%
! GAGAAAAAAAATAGGGATAA+AGG - chr3.2:8874976-8874995 MS.gene65789:intron 25.0%
! GCCAGTAATATTTAAGAAAA+TGG - chr3.2:8872341-8872360 MS.gene65789:intron 25.0%
! GTCAGTATAATTATATGTGT+CGG + chr3.2:8871706-8871725 None:intergenic 25.0%
! TACAAATTTCAACAATCACA+GGG + chr3.2:8872626-8872645 None:intergenic 25.0%
! TAGACTAAAGCGAAAAAATA+GGG + chr3.2:8874696-8874715 None:intergenic 25.0%
! TAGTAAAGCAGAAACAATAA+AGG + chr3.2:8872465-8872484 None:intergenic 25.0%
! TCAGTATAATTATATGTGTC+GGG + chr3.2:8871705-8871724 None:intergenic 25.0%
! TCGCTTAAGAAGTAAAATTA+AGG + chr3.2:8875531-8875550 None:intergenic 25.0%
! TGAGTTCCTTATAGATTAAT+AGG - chr3.2:8871881-8871900 MS.gene65789:intron 25.0%
! TTACAAATTTCAACAATCAC+AGG + chr3.2:8872627-8872646 None:intergenic 25.0%
! TTGAAAAATAAGCATGGAAT+TGG - chr3.2:8875488-8875507 MS.gene65789:intron 25.0%
!! ACTTTGAGAATTTAAACTTG+AGG - chr3.2:8872496-8872515 MS.gene65789:CDS 25.0%
!! ATTCAAAAACGACGATTTTA+TGG - chr3.2:8875920-8875939 MS.gene65789:intron 25.0%
!! CAAGAAAAATCTGAAATCAA+TGG - chr3.2:8870751-8870770 MS.gene65789:CDS 25.0%
!! GATTTTATTAGGTAACTAAC+TGG - chr3.2:8874160-8874179 MS.gene65789:intron 25.0%
!! TGACTTTGAGAATTTAAACT+TGG + chr3.2:8872513-8872494 None:intergenic 25.0%
!! TTCAAAAACGACGATTTTAT+GGG - chr3.2:8875921-8875940 MS.gene65789:intron 25.0%
!! TTTAATTTCTTTCCTTGAGA+AGG + chr3.2:8872088-8872107 None:intergenic 25.0%
!! TTTCTCAAGACATCTTTTAT+TGG - chr3.2:8872164-8872183 MS.gene65789:intron 25.0%
!! TTTTAAACTATTATCCGTGT+CGG + chr3.2:8870996-8871015 None:intergenic 25.0%
!!! AACTTACTATTTTAAGAGGA+GGG + chr3.2:8875438-8875457 None:intergenic 25.0%
!!! CATGCTTATTTTTCAAATGA+TGG + chr3.2:8875484-8875503 None:intergenic 25.0%
!!! TCATAACGTTTTTTTTCTTG+TGG + chr3.2:8874413-8874432 None:intergenic 25.0%
!!! TGAATTTGTTGGATTGATTA+AGG - chr3.2:8875149-8875168 MS.gene65789:intron 25.0%
!!! TTGTTTGAAAAGCATTATCT+TGG - chr3.2:8873126-8873145 MS.gene65789:intron 25.0%
!!! TTTGGTTTTTTTATGTAGCT+TGG + chr3.2:8874112-8874131 None:intergenic 25.0%
!!! TTTTTTCAGATAAGTGCTTA+TGG - chr3.2:8873474-8873493 MS.gene65789:intron 25.0%
AAACTATACAAATCATGCTG+CGG + chr3.2:8873293-8873312 None:intergenic 30.0%
AAATGATGGCTCACAAAAAA+TGG + chr3.2:8875470-8875489 None:intergenic 30.0%
AAGGAACAATAAGATTTGTG+TGG + chr3.2:8873183-8873202 None:intergenic 30.0%
ACAAATTTCAACAATCACAG+GGG + chr3.2:8872625-8872644 None:intergenic 30.0%
ACGAACATACCTTAGATATA+TGG + chr3.2:8873893-8873912 None:intergenic 30.0%
ACTTATCATAATGCTTGCAA+AGG - chr3.2:8875285-8875304 MS.gene65789:intron 30.0%
ACTTATTTAAGCTGATCTAC+TGG + chr3.2:8873567-8873586 None:intergenic 30.0%
AGTGTAAGCTCAAAGATTAA+GGG + chr3.2:8872938-8872957 None:intergenic 30.0%
ATAGAAAGTTTCATGTCTCA+AGG + chr3.2:8873716-8873735 None:intergenic 30.0%
CAAACAACTAGAAATCGTAT+TGG - chr3.2:8874437-8874456 MS.gene65789:intron 30.0%
CATCAAAGTGATGTAATGAA+TGG - chr3.2:8870825-8870844 MS.gene65789:CDS 30.0%
CATGTTTAACCAAAACAAAG+AGG + chr3.2:8871281-8871300 None:intergenic 30.0%
CATTCATTACATCACTTTGA+TGG + chr3.2:8870827-8870846 None:intergenic 30.0%
CCAGTAATATATCCATCTTT+AGG - chr3.2:8874627-8874646 MS.gene65789:intron 30.0%
CCTAAAGATGGATATATTAC+TGG + chr3.2:8874630-8874649 None:intergenic 30.0%
CTTCAAATTAAAGTTGTGTC+AGG + chr3.2:8872405-8872424 None:intergenic 30.0%
GAACAACAAGAATAAGTCAT+TGG - chr3.2:8870858-8870877 MS.gene65789:CDS 30.0%
GCTTTAGTCTATGTAACATT+TGG - chr3.2:8874705-8874724 MS.gene65789:intron 30.0%
GGAATAATATCTCTTGAAGA+AGG - chr3.2:8876068-8876087 MS.gene65789:intron 30.0%
TAGTGTAAGCTCAAAGATTA+AGG + chr3.2:8872939-8872958 None:intergenic 30.0%
TCCCTATATGTTTGAAAACT+CGG - chr3.2:8874743-8874762 MS.gene65789:intron 30.0%
TCTCAGTTATAACTTAGACA+AGG + chr3.2:8873202-8873221 None:intergenic 30.0%
TGGATTGATTAAGGTTAATG+TGG - chr3.2:8875158-8875177 MS.gene65789:intron 30.0%
TTATTATCTGATCTTGCAGT+CGG - chr3.2:8875336-8875355 MS.gene65789:intron 30.0%
TTCATTACATCACTTTGATG+GGG + chr3.2:8870825-8870844 None:intergenic 30.0%
TTCTCCCTATTTACTGTTAT+AGG - chr3.2:8875116-8875135 MS.gene65789:intron 30.0%
TTGCATTAGTCACTACTATA+TGG + chr3.2:8871984-8872003 None:intergenic 30.0%
! ACCGAGTTTTCAAACATATA+GGG + chr3.2:8874747-8874766 None:intergenic 30.0%
! AGGGATAAAGGTATATTACA+GGG - chr3.2:8874988-8875007 MS.gene65789:intron 30.0%
! AGGTATAGAAAGTTTTTACC+TGG + chr3.2:8870781-8870800 None:intergenic 30.0%
! AGTTGAAATTGATAGTCCTA+AGG + chr3.2:8873236-8873255 None:intergenic 30.0%
! ATATGAGCTGCAACAATTTT+TGG - chr3.2:8874298-8874317 MS.gene65789:intron 30.0%
! ATCACAAGAAGTTTAGAATG+AGG - chr3.2:8873685-8873704 MS.gene65789:intron 30.0%
! TACCGAGTTTTCAAACATAT+AGG + chr3.2:8874748-8874767 None:intergenic 30.0%
! TAGGGATAAAGGTATATTAC+AGG - chr3.2:8874987-8875006 MS.gene65789:intron 30.0%
! TCTAACTTGTATCTAGAACT+CGG - chr3.2:8875623-8875642 MS.gene65789:intron 30.0%
! TTACTTCTTAAGCGATGTTT+TGG - chr3.2:8875536-8875555 MS.gene65789:intron 30.0%
! TTTTGCCTCTGGATTTAAAT+GGG + chr3.2:8874827-8874846 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr3.2:8871547-8871566 MS.gene65789:intron 30.0%
!! ATCTTTAGGTTTTGTCGAAA+CGG - chr3.2:8874641-8874660 MS.gene65789:intron 30.0%
!! ATTTGTAAGTTGAGTTTTCG+AGG - chr3.2:8872564-8872583 MS.gene65789:CDS 30.0%
!! CAACTTACTATTTTAAGAGG+AGG + chr3.2:8875439-8875458 None:intergenic 30.0%
!! TTTGTAAGTTGAGTTTTCGA+GGG - chr3.2:8872565-8872584 MS.gene65789:CDS 30.0%
!!! TAACGTTTTTTTTCTTGTGG+AGG + chr3.2:8874410-8874429 None:intergenic 30.0%
AAAACCGAATTCTTCCATTG+AGG - chr3.2:8874129-8874148 MS.gene65789:CDS 35.0%
AACATAAACACTTGTGAGAC+CGG + chr3.2:8872891-8872910 None:intergenic 35.0%
AATTGAAGACGTGTATGTGT+TGG - chr3.2:8870916-8870935 MS.gene65789:CDS 35.0%
AATTGGGGATGTTACTACAA+TGG - chr3.2:8871852-8871871 MS.gene65789:intron 35.0%
AATTTAGGCTCATTCACAAG+TGG + chr3.2:8875564-8875583 None:intergenic 35.0%
ACCTGCCTATAACAGTAAAT+AGG + chr3.2:8875124-8875143 None:intergenic 35.0%
ACGTTTAATTAGCCCATGTT+TGG - chr3.2:8873364-8873383 MS.gene65789:intron 35.0%
AGCAGAAACAATAAAGGAGA+CGG + chr3.2:8872459-8872478 None:intergenic 35.0%
AGCTTCTGATGTTTCTTGTA+TGG - chr3.2:8872248-8872267 MS.gene65789:intron 35.0%
ATGTTTGAAAACTCGGTATC+CGG - chr3.2:8874750-8874769 MS.gene65789:intron 35.0%
ATTAGGCTTTCATTCCAAAC+AGG + chr3.2:8875394-8875413 None:intergenic 35.0%
CAAGAGAAAGGATGACATAA+GGG + chr3.2:8875227-8875246 None:intergenic 35.0%
CAGTGCAAAAGAGATCATAA+AGG + chr3.2:8872770-8872789 None:intergenic 35.0%
CATGACTTAAAAGAAGAGCA+TGG - chr3.2:8875822-8875841 MS.gene65789:intron 35.0%
CCTGCCTATAACAGTAAATA+GGG + chr3.2:8875123-8875142 None:intergenic 35.0%
GACAATACACTTGTGAAAGA+TGG - chr3.2:8876047-8876066 MS.gene65789:intron 35.0%
GATACAAGTTAGAAGAACAC+AGG + chr3.2:8875616-8875635 None:intergenic 35.0%
GTGTATAATGGTATTTCGAC+AGG - chr3.2:8872697-8872716 MS.gene65789:intron 35.0%
GTTTAACCAAAACAAAGAGG+AGG + chr3.2:8871278-8871297 None:intergenic 35.0%
GTTTATCTCTCCTACTTGTA+AGG - chr3.2:8873611-8873630 MS.gene65789:intron 35.0%
GTTTCGACAAAACCTAAAGA+TGG + chr3.2:8874642-8874661 None:intergenic 35.0%
TACAAAGAAGAGTAACTCGT+TGG - chr3.2:8874508-8874527 MS.gene65789:intron 35.0%
TACACCACTAGCATCAATTT+AGG + chr3.2:8875579-8875598 None:intergenic 35.0%
TATGAAGCACAAACACTCTT+TGG + chr3.2:8871091-8871110 None:intergenic 35.0%
TCAAAGATTAAGGGTCTGTT+TGG + chr3.2:8872929-8872948 None:intergenic 35.0%
TCACAAGTCAGAGTGTATAA+TGG - chr3.2:8872685-8872704 MS.gene65789:intron 35.0%
TCACTATATCTCTGATAGCT+AGG + chr3.2:8875197-8875216 None:intergenic 35.0%
TCATGACAAGCTATGAAACA+CGG - chr3.2:8871650-8871669 MS.gene65789:intron 35.0%
TCGTATACAATCTGCATGTA+AGG + chr3.2:8875891-8875910 None:intergenic 35.0%
TGTCACTGAATCTAGATGAA+TGG - chr3.2:8874011-8874030 MS.gene65789:intron 35.0%
TTTACTGTTATAGGCAGGTA+TGG - chr3.2:8875125-8875144 MS.gene65789:intron 35.0%
TTTATTTGCATCAAGTGCTC+TGG - chr3.2:8873846-8873865 MS.gene65789:intron 35.0%
TTTCTTTCCTTGAGAAGGTT+AGG + chr3.2:8872083-8872102 None:intergenic 35.0%
! ACAAACACTCTTTGGATTAG+AGG + chr3.2:8871083-8871102 None:intergenic 35.0%
! CAAGAAACATCAGAAGCTTT+TGG + chr3.2:8872246-8872265 None:intergenic 35.0%
! CTCAAGATGATTCTCAGTTT+TGG + chr3.2:8875015-8875034 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr3.2:8871416-8871435 None:intergenic 35.0%
! GTGAATACTTACACCCATTT+TGG + chr3.2:8873060-8873079 None:intergenic 35.0%
! GTTTTGCCTCTGGATTTAAA+TGG + chr3.2:8874828-8874847 None:intergenic 35.0%
! TACTTTTCGTCTTTGAACCA+CGG + chr3.2:8871815-8871834 None:intergenic 35.0%
! TCAATGGAAGAATTCGGTTT+TGG + chr3.2:8874130-8874149 None:intergenic 35.0%
! TCTGAAATCAATGGTATACC+AGG - chr3.2:8870760-8870779 MS.gene65789:CDS 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr3.2:8871412-8871431 None:intergenic 35.0%
! TTGAATCAAGTGCGTGTTTT+TGG + chr3.2:8875786-8875805 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3.2:8871312-8871331 None:intergenic 35.0%
!! TGAAGTGTCGATGTTAGATA+CGG + chr3.2:8870896-8870915 None:intergenic 35.0%
!!! TAAGCATGGAATTGGTCTTT+TGG - chr3.2:8875496-8875515 MS.gene65789:intron 35.0%
AACATCAGGTCTTCAAGTCT+TGG - chr3.2:8873819-8873838 MS.gene65789:intron 40.0%
AACCAAAACAAAGAGGAGGA+GGG + chr3.2:8871274-8871293 None:intergenic 40.0%
AAGTGACAGTGCTACATACA+AGG - chr3.2:8872422-8872441 MS.gene65789:CDS 40.0%
AAGTTCCAACTGAACTCTAG+AGG + chr3.2:8875657-8875676 None:intergenic 40.0%
AATGTCTCAATTGTAGGGTC+AGG - chr3.2:8872735-8872754 MS.gene65789:intron 40.0%
ACAAGTTAGAAGAACACAGG+AGG + chr3.2:8875613-8875632 None:intergenic 40.0%
AGATTGTCTAACCTTTCCTG+TGG + chr3.2:8872988-8873007 None:intergenic 40.0%
AGGAGAGATAAACCACACTA+AGG + chr3.2:8873604-8873623 None:intergenic 40.0%
AGGCTACAAAATGTTGAGAG+AGG - chr3.2:8876116-8876135 MS.gene65789:intron 40.0%
AGTCAATGCAGCTTGGAAAA+TGG - chr3.2:8876012-8876031 MS.gene65789:intron 40.0%
AGTCACTACTATATGGTGCA+GGG + chr3.2:8871977-8871996 None:intergenic 40.0%
AGTGACAGTGCTACATACAA+GGG - chr3.2:8872423-8872442 MS.gene65789:CDS 40.0%
ATCTCTTCTCAACCATGGAT+TGG + chr3.2:8871596-8871615 None:intergenic 40.0%
ATTACATCACTTTGATGGGG+AGG + chr3.2:8870822-8870841 None:intergenic 40.0%
CCAAGAGAAAGGATGACATA+AGG + chr3.2:8875228-8875247 None:intergenic 40.0%
CCCTATTTACTGTTATAGGC+AGG - chr3.2:8875120-8875139 MS.gene65789:intron 40.0%
CCTAGGAGTCCATATATCTA+AGG - chr3.2:8873881-8873900 MS.gene65789:CDS 40.0%
CCTTAGATATATGGACTCCT+AGG + chr3.2:8873884-8873903 None:intergenic 40.0%
CCTTATGTCATCCTTTCTCT+TGG - chr3.2:8875225-8875244 MS.gene65789:intron 40.0%
CTGAATATAACCACCTGTGT+TGG + chr3.2:8871139-8871158 None:intergenic 40.0%
GAAACAATAAAGGAGACGGA+TGG + chr3.2:8872455-8872474 None:intergenic 40.0%
GCAGGTATGGTTGAATTTGT+TGG - chr3.2:8875138-8875157 MS.gene65789:intron 40.0%
GCTCTTAGTAACATTGTCCT+CGG - chr3.2:8873635-8873654 MS.gene65789:intron 40.0%
GGAAGAAAGAATGAGGGAAA+AGG + chr3.2:8870801-8870820 None:intergenic 40.0%
GGAGAGATAAACCACACTAA+GGG + chr3.2:8873603-8873622 None:intergenic 40.0%
GGATGAAATTGTTCTTGCGT+GGG + chr3.2:8874360-8874379 None:intergenic 40.0%
GGGACAAATCAAATTCTCCT+CGG + chr3.2:8874327-8874346 None:intergenic 40.0%
GGTGTAGTATCTATGAAGCA+CGG - chr3.2:8870937-8870956 MS.gene65789:CDS 40.0%
GTCAATGCAGCTTGGAAAAT+GGG - chr3.2:8876013-8876032 MS.gene65789:intron 40.0%
TAACCAAAACAAAGAGGAGG+AGG + chr3.2:8871275-8871294 None:intergenic 40.0%
TAGTCACTACTATATGGTGC+AGG + chr3.2:8871978-8871997 None:intergenic 40.0%
TATTAGCTGTGTACCGTATC+CGG - chr3.2:8871774-8871793 MS.gene65789:intron 40.0%
TCTCAGGAATTGACAGCATT+AGG + chr3.2:8875411-8875430 None:intergenic 40.0%
TGAGAAGCTAAAGATGCCTT+AGG - chr3.2:8873217-8873236 MS.gene65789:intron 40.0%
TGAGACAGGAAATCTCATTG+AGG - chr3.2:8876096-8876115 MS.gene65789:intron 40.0%
TGAGCCTAAATTGATGCTAG+TGG - chr3.2:8875572-8875591 MS.gene65789:intron 40.0%
TGGATCATCAGAGCCAAAAT+GGG - chr3.2:8873044-8873063 MS.gene65789:CDS 40.0%
TGGATGAAATTGTTCTTGCG+TGG + chr3.2:8874361-8874380 None:intergenic 40.0%
TTAGCACTTGTGAGAGCTTA+TGG + chr3.2:8873542-8873561 None:intergenic 40.0%
TTCCTTGAGAAGGTTAGGAA+GGG + chr3.2:8872078-8872097 None:intergenic 40.0%
TTGACATGAAGAAACTCACC+TGG + chr3.2:8875254-8875273 None:intergenic 40.0%
TTTCCTTGAGAAGGTTAGGA+AGG + chr3.2:8872079-8872098 None:intergenic 40.0%
! AAACGACGATTTTATGGGAG+AGG - chr3.2:8875926-8875945 MS.gene65789:intron 40.0%
! AACATATAGGGTTTTGCCTC+TGG + chr3.2:8874838-8874857 None:intergenic 40.0%
! AGACGAACAAGTCGATTCAT+TGG - chr3.2:8874036-8874055 MS.gene65789:intron 40.0%
! AGTCGATTCATTGGTCAACT+TGG - chr3.2:8874045-8874064 MS.gene65789:intron 40.0%
! GCTTTTGCTGCTGATACTAA+TGG + chr3.2:8875969-8875988 None:intergenic 40.0%
! GTAACTACATGTGTCGATGT+CGG - chr3.2:8872376-8872395 MS.gene65789:intron 40.0%
! GTCGATTCATTGGTCAACTT+GGG - chr3.2:8874046-8874065 MS.gene65789:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr3.2:8871413-8871432 None:intergenic 40.0%
! TTGCAGCTCATATTTTCTCC+TGG + chr3.2:8874291-8874310 None:intergenic 40.0%
!! AACAAGTTCTGTGCTGATTG+TGG - chr3.2:8873024-8873043 MS.gene65789:CDS 40.0%
!! ACTAAGAGCACCTTACAAGT+AGG + chr3.2:8873624-8873643 None:intergenic 40.0%
!! GAAAAGCTTGACTTGCAAGA+AGG - chr3.2:8872595-8872614 MS.gene65789:CDS 40.0%
!! GATTGGTCTCTCGAATTAGT+CGG + chr3.2:8874784-8874803 None:intergenic 40.0%
!! GCAACAATTTTTGGATTCCG+AGG - chr3.2:8874307-8874326 MS.gene65789:intron 40.0%
!! TCTTTGGATTAGAGGTGTTC+CGG + chr3.2:8871075-8871094 None:intergenic 40.0%
!!! AGGAGCGCTCTGATTTTATT+AGG - chr3.2:8874149-8874168 MS.gene65789:intron 40.0%
!!! AGTGCGTGTTTTTGGTTTTG+CGG + chr3.2:8875778-8875797 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3.2:8871551-8871570 MS.gene65789:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3.2:8871570-8871551 None:intergenic 40.0%
!!! TTTTGCCTCTAGAGTTCAGT+TGG - chr3.2:8875649-8875668 MS.gene65789:intron 40.0%
AACCACACTAAGGGACTGTT+TGG + chr3.2:8873594-8873613 None:intergenic 45.0%
ACAATCTGATGCGTCAAGCA+GGG - chr3.2:8873001-8873020 MS.gene65789:intron 45.0%
ACCAAAACAAAGAGGAGGAG+GGG + chr3.2:8871273-8871292 None:intergenic 45.0%
ACTGATACAGACACAGACAC+TGG - chr3.2:8872297-8872316 MS.gene65789:intron 45.0%
AGAGAGCGATGGATGTTATC+TGG - chr3.2:8872819-8872838 MS.gene65789:CDS 45.0%
AGAGCATGGTCTTCATCTTC+TGG - chr3.2:8875836-8875855 MS.gene65789:intron 45.0%
ATCATGGAGTCAATGCAGCT+TGG - chr3.2:8876005-8876024 MS.gene65789:intron 45.0%
ATCCAAACAGTCCCTTAGTG+TGG - chr3.2:8873589-8873608 MS.gene65789:intron 45.0%
ATCCCTTCCTAACCTTCTCA+AGG - chr3.2:8872073-8872092 MS.gene65789:intron 45.0%
ATGGGGAGGAAGAAAGAATG+AGG + chr3.2:8870808-8870827 None:intergenic 45.0%
CAGCGCATTGTTTGAACATC+AGG - chr3.2:8873805-8873824 MS.gene65789:intron 45.0%
CGCTCCTCAATGGAAGAATT+CGG + chr3.2:8874136-8874155 None:intergenic 45.0%
CTATCGTTTCGAAACAGCTG+GGG - chr3.2:8874461-8874480 MS.gene65789:intron 45.0%
CTCAAAGTCAAAGAGAGCGA+TGG - chr3.2:8872808-8872827 MS.gene65789:CDS 45.0%
CTTGCGTGGGATGGTATAAA+GGG + chr3.2:8874347-8874366 None:intergenic 45.0%
CTTGGAAAATGGGTAGCAAG+TGG - chr3.2:8876023-8876042 MS.gene65789:intron 45.0%
CTTGTGAGACCGGATAATGT+TGG + chr3.2:8872881-8872900 None:intergenic 45.0%
GAAATTGTTCTTGCGTGGGA+TGG + chr3.2:8874356-8874375 None:intergenic 45.0%
GATACATGAGACACCAACAC+AGG - chr3.2:8871123-8871142 MS.gene65789:intron 45.0%
GATAGTGCTAGACCAATCCA+TGG - chr3.2:8871581-8871600 MS.gene65789:intron 45.0%
GATTCATTGGTCAACTTGGG+TGG - chr3.2:8874049-8874068 MS.gene65789:intron 45.0%
GCAACATCTCTTCTCAACCA+TGG + chr3.2:8871601-8871620 None:intergenic 45.0%
GCTATCGTTTCGAAACAGCT+GGG - chr3.2:8874460-8874479 MS.gene65789:intron 45.0%
GTGACAGTGCTACATACAAG+GGG - chr3.2:8872424-8872443 MS.gene65789:CDS 45.0%
GTGGATCATCAGAGCCAAAA+TGG - chr3.2:8873043-8873062 MS.gene65789:CDS 45.0%
TCGTCTTTGAACCACGGATA+CGG + chr3.2:8871809-8871828 None:intergenic 45.0%
TCTGCTTACTTCCGATCACT+AGG - chr3.2:8872961-8872980 MS.gene65789:intron 45.0%
TCTGGTATACACAGAAGCCT+AGG - chr3.2:8873864-8873883 MS.gene65789:CDS 45.0%
TCTTGCGTGGGATGGTATAA+AGG + chr3.2:8874348-8874367 None:intergenic 45.0%
TGAAGAAGGGAAAGTGAGAC+AGG - chr3.2:8876082-8876101 MS.gene65789:intron 45.0%
TGGGGAGGAAGAAAGAATGA+GGG + chr3.2:8870807-8870826 None:intergenic 45.0%
TTAAGAGGAGGGATGTTCTC+AGG + chr3.2:8875427-8875446 None:intergenic 45.0%
TTGTGGAGGATTGTAGCTTG+AGG + chr3.2:8874396-8874415 None:intergenic 45.0%
TTTCCTGTGGACCTAGTGAT+CGG + chr3.2:8872975-8872994 None:intergenic 45.0%
! AAAATCAGAGCGCTCCTCAA+TGG + chr3.2:8874146-8874165 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3.2:8871550-8871569 MS.gene65789:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3.2:8871569-8871550 None:intergenic 45.0%
!!! CTATTTTTTTAAATTATTAT+CGG - chr3.2:8871165-8871184 MS.gene65789:intron 5.0%
AAAACTCGGTATCCGGCTCA+AGG - chr3.2:8874757-8874776 MS.gene65789:intron 50.0%
AATCTGACTGTCCTCTAGCG+GGG - chr3.2:8874800-8874819 MS.gene65789:intron 50.0%
ACACGACATAGACACCGACA+CGG - chr3.2:8870979-8870998 MS.gene65789:CDS 50.0%
ACAGTGCTACATACAAGGGG+AGG - chr3.2:8872427-8872446 MS.gene65789:CDS 50.0%
ACATGAGACACCAACACAGG+TGG - chr3.2:8871126-8871145 MS.gene65789:intron 50.0%
ACCAAGACACTCCTAATCCG+AGG + chr3.2:8871681-8871700 None:intergenic 50.0%
ATGAAGCACGGACACAGACA+TGG - chr3.2:8870949-8870968 MS.gene65789:CDS 50.0%
CAAGACACTCCTAATCCGAG+GGG + chr3.2:8871679-8871698 None:intergenic 50.0%
CAATCTGACTGTCCTCTAGC+GGG - chr3.2:8874799-8874818 MS.gene65789:intron 50.0%
CATCCTTTCTCTTGGTCACC+AGG - chr3.2:8875233-8875252 MS.gene65789:intron 50.0%
CCAAGACACTCCTAATCCGA+GGG + chr3.2:8871680-8871699 None:intergenic 50.0%
CCAATCTGACTGTCCTCTAG+CGG - chr3.2:8874798-8874817 MS.gene65789:intron 50.0%
GAATTAGTCGGTCCTTGAGC+CGG + chr3.2:8874772-8874791 None:intergenic 50.0%
GACAATCTGATGCGTCAAGC+AGG - chr3.2:8873000-8873019 MS.gene65789:intron 50.0%
GATCACTAGGTCCACAGGAA+AGG - chr3.2:8872974-8872993 MS.gene65789:intron 50.0%
GGCTATCGTTTCGAAACAGC+TGG - chr3.2:8874459-8874478 MS.gene65789:intron 50.0%
TATGAAACACGGACACCCCT+CGG - chr3.2:8871661-8871680 MS.gene65789:intron 50.0%
TCACCTGGTGACCAAGAGAA+AGG + chr3.2:8875239-8875258 None:intergenic 50.0%
TTGAACCACGGATACGGACA+TGG + chr3.2:8871803-8871822 None:intergenic 50.0%
!! TCCCCTCCTCCTCTTTGTTT+TGG - chr3.2:8871269-8871288 MS.gene65789:intron 50.0%
!! TTGTTGTCGGTGTCAGACAC+CGG - chr3.2:8871053-8871072 MS.gene65789:intron 50.0%
ACGGACACAGACATGGACAC+CGG - chr3.2:8870956-8870975 MS.gene65789:CDS 55.0%
ACGGACATGGACACCGGATA+CGG + chr3.2:8871790-8871809 None:intergenic 55.0%
ACGGATACGGACATGGACAC+CGG + chr3.2:8871796-8871815 None:intergenic 55.0%
ATCTGACTGTCCTCTAGCGG+GGG - chr3.2:8874801-8874820 MS.gene65789:intron 55.0%
CCGCTAGAGGACAGTCAGAT+TGG + chr3.2:8874801-8874820 None:intergenic 55.0%
CTTCCGATCACTAGGTCCAC+AGG - chr3.2:8872969-8872988 MS.gene65789:intron 55.0%
GCTTGAGGAACTGCTCTGAC+TGG + chr3.2:8874381-8874400 None:intergenic 55.0%
GGGGGCCCATTTAAATCCAG+AGG - chr3.2:8874819-8874838 MS.gene65789:intron 55.0%
TTTAAATGGGCCCCCGCTAG+AGG + chr3.2:8874814-8874833 None:intergenic 55.0%
! GTCGGTGTCTATGTCGTGTC+CGG + chr3.2:8870978-8870997 None:intergenic 55.0%
!! CCCTCGGATTAGGAGTGTCT+TGG - chr3.2:8871677-8871696 MS.gene65789:CDS 55.0%
ACACGGACACCCCTCGGATT+AGG - chr3.2:8871667-8871686 MS.gene65789:CDS 60.0%
GGTGTCCATGTCCGTATCCG+TGG - chr3.2:8871795-8871814 MS.gene65789:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 8870736 8876181 8870736 ID=MS.gene65789
chr3.2 mRNA 8870736 8876181 8870736 ID=MS.gene65789.t1;Parent=MS.gene65789
chr3.2 exon 8876136 8876181 8876136 ID=MS.gene65789.t1.exon1;Parent=MS.gene65789.t1
chr3.2 CDS 8876136 8876181 8876136 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8874077 8874166 8874077 ID=MS.gene65789.t1.exon2;Parent=MS.gene65789.t1
chr3.2 CDS 8874077 8874166 8874077 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8873850 8873934 8873850 ID=MS.gene65789.t1.exon3;Parent=MS.gene65789.t1
chr3.2 CDS 8873850 8873934 8873850 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8873015 8873090 8873015 ID=MS.gene65789.t1.exon4;Parent=MS.gene65789.t1
chr3.2 CDS 8873015 8873090 8873015 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8872747 8872910 8872747 ID=MS.gene65789.t1.exon5;Parent=MS.gene65789.t1
chr3.2 CDS 8872747 8872910 8872747 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8872388 8872625 8872388 ID=MS.gene65789.t1.exon6;Parent=MS.gene65789.t1
chr3.2 CDS 8872388 8872625 8872388 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8871663 8871779 8871663 ID=MS.gene65789.t1.exon7;Parent=MS.gene65789.t1
chr3.2 CDS 8871663 8871779 8871663 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8871467 8871562 8871467 ID=MS.gene65789.t1.exon8;Parent=MS.gene65789.t1
chr3.2 CDS 8871467 8871562 8871467 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
chr3.2 exon 8870736 8871017 8870736 ID=MS.gene65789.t1.exon9;Parent=MS.gene65789.t1
chr3.2 CDS 8870736 8871017 8870736 ID=cds.MS.gene65789.t1;Parent=MS.gene65789.t1
Gene Sequence

>MS.gene65789

ATGGAGATGATGCATCAAGAAAAATCTGAAATCAATGGTATACCAGGTAAAAACTTTCTATACCTTTTCCCTCATTCTTTCTTCCTCCCCATCAAAGTGATGTAATGAATGGTTGATATTATGAACAACAAGAATAAGTCATTGGAATTTGATAGAACCGTATCTAACATCGACACTTCAAATTGAAGACGTGTATGTGTTGGTGTAGTATCTATGAAGCACGGACACAGACATGGACACCGGACACGACATAGACACCGACACGGATAATAGTTTAAAAAAATGCAATAATTCAGTGTAATCATAGATATATTGTATTGTTGTCGGTGTCAGACACCGGAACACCTCTAATCCAAAGAGTGTTTGTGCTTCATAGTGTAGTACACAGATACATGAGACACCAACACAGGTGGTTATATTCAGCCACTTCTATTTTTTTAAATTATTATCGGTGTCTGTGTTTTAGTGTAAGTGTCATGTTTATATCAATGTTTCACATGATAGAATAGAGCAGATTTATTCACATTTTTCTTTCCCCTCCTCCTCTTTGTTTTGGTTAAACATGTACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATTATTGCATTTCTTAATATGTGTGTAAACATCTAAAACGACACTCATTTTGAAACGGAGGGAGTATATGATAGTGCTAGACCAATCCATGGTTGAGAAGAGATGTTGCAATTTGCTTGCTCTCAAGTAACTACAAATTCATGACAAGCTATGAAACACGGACACCCCTCGGATTAGGAGTGTCTTGGTGCCCGACACATATAATTATACTGACACAACACCGACAAATTTAATTACACTGAATTATGTGATTTTCTCAAATTATTAGCTGTGTACCGTATCCGGTGTCCATGTCCGTATCCGTGGTTCAAAGACGAAAAGTATTTTTGAATTTTAAGTTAATTGGGGATGTTACTACAATGGCACTATTGAGTTCCTTATAGATTAATAGGATAGTTTTTTTTAGTAAAATGTTAAATTTTTGTTCTGAATTTTGAGGGTGTATGAACAATAGATGTTGTGCCCTGCACCATATAGTAGTGACTAATGCAACATCAATTATGAGTTAGATTATCTTCATTGTCTTCAAATAAGTACAATAAACTAAGTTTATTTCTAAAAATCCCTTCCTAACCTTCTCAAGGAAAGAAATTAAACATGATCTATGAGGGCTTCACCTATCTATAATAAATTATCTGTGATCAGGTTCTCATTTCTCAAGACATCTTTTATTGGTTAATTGTATTAAAGAATTCAAAACAAAGAAACAAAATGTGATTACAAGAATGACTCCAAAAGCTTCTGATGTTTCTTGTATGGAATGAAAGTTTATTGTGTTATGAAGCACTGATACAGACACAGACACTGGACACGATATTGACACATTCTTGCCAGTAATATTTAAGAAAATGGAACTAATTGAATGTAACTACATGTGTCGATGTCGGACACCTGACACAACTTTAATTTGAAGTGACAGTGCTACATACAAGGGGAGGAACCATCCGTCTCCTTTATTGTTTCTGCTTTACTAGAATGACTTTGACTTTGAGAATTTAAACTTGAGGTTTCCTTATATAAAAAAAAAAGTCGAGTTCCGTTTGTTTTTAAGCATTTGTAAGTTGAGTTTTCGAGGGAATAAAAGAAAAGCTTGACTTGCAAGAAGGTGAACCCCTGTGATTGTTGAAATTTGTAATGATAAAAGTAACTTCGAAGTGATGCTTTGTCGCAATTTCACAAGTCAGAGTGTATAATGGTATTTCGACAGGCTAACTATAAAATTAAATGTCTCAATTGTAGGGTCAGGATCTTCTTGCCTTTATGATCTCTTTTGCACTGAAACACCAAGTTTAAATTCTCAAAGTCAAAGAGAGCGATGGATGTTATCTGGTATTTTTCCCTTTTAATTGTTACATTTATCAAATAACCAACATTATCCGGTCTCACAAGTGTTTATGTTAGTATATAAGTTAATCCAAACAGACCCTTAATCTTTGAGCTTACACTATTTCTGCTTACTTCCGATCACTAGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCAGGGAACAAGTTCTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTAAGTATTCACTTTATTTGTAAAGTAATTTGATCTATGTGCATTGCTAAGTGCTACATTGTTTGAAAAGCATTATCTTGGATCAAGAACTAGTTATTAATACTGTGTCTTTCCACACAAATCTTATTGTTCCTTGTCTAAGTTATAACTGAGAAGCTAAAGATGCCTTAGGACTATCAATTTCAACTTGCTTGTTATTTGCTTTCTATCTTTGTGAAGCAACCGCAGCATGATTTGTATAGTTTTATGTTTAAAATTACATGAATCCAATTTAGTTTTGATACATTTTGTGTAATACGTTTAATTAGCCCATGTTTGGATAAACAAATTAAAATTAAGCGCTTATAGCATAAACCTTGTTTATGTATAAGTTATTTCTGTATCAGAAGATAAAATGAAGTCAAACTTTTTTCAGATAAGTGCTTATGGACATAAGCTAAAAACAACTTTTGAACATTTCATAAATTGTTTCCATAAGCTCTCACAAGTGCTAATGCCAGTAGATCAGCTTAAATAAGTCAATCCAAACAGTCCCTTAGTGTGGTTTATCTCTCCTACTTGTAAGGTGCTCTTAGTAACATTGTCCTCGGACAAATTTTTTTATTTTGTATTTCTAGATCACAAGAAGTTTAGAATGAGGAAGAACCTTGAGACATGAAACTTTCTATTCAGAATTAATTGACAATTTACTTTTCTCAGTAGATAATTAGTTCATATTATTTGCATTTGATTTTATTCAGCGCATTGTTTGAACATCAGGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACACAGAAGCCTAGGAGTCCATATATCTAAGGTATGTTCGTAACATAATATGTAAAACACATGTTATTTGACATTAAATGCATTTACTTGCAAATTTTCTAATAGAAATTTTAACATGATTTGACATGATTATAGGTTCTGTCACTGAATCTAGATGAATGGACAGACGAACAAGTCGATTCATTGGTCAACTTGGGTGGAAATACATTAATCAATAAGAAGTACGAAGCTTGCATGCCAAGCTACATAAAAAAACCAAAACCGAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGTAACTAACTGGATGAAAAAGCGTCACGAGCACACAAACACACACGCACACAACAAATTCATATTTATCTTGAGATAGGATACCATTGTTTTTCACTTTTCTTTTTAATTTTATTATCCAGGAGAAAATATGAGCTGCAACAATTTTTGGATTCCGAGGAGAATTTGATTTGTCCCTTTATACCATCCCACGCAAGAACAATTTCATCCAGTCAGAGCAGTTCCTCAAGCTACAATCCTCCACAAGAAAAAAAACGTTATGATAAACAAACAACTAGAAATCGTATTGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAGTAAGAGTACAAAGAAGAGTAACTCGTTGGTAATGTTTCATTTCATTTCTTCTTTAAAGTTAGTTAATGCAATAAATAATGCTATCTATGTTGAGAATTCTGATAGACTTAAATATGTTTTGTGTCCCAGTAATATATCCATCTTTAGGTTTTGTCGAAACGGTCCCTGCAATTTTTTTGTTCTATTATAGTCCCTATTTTTTCGCTTTAGTCTATGTAACATTTGGTTTATGTTCTTTTAGTCCCTATATGTTTGAAAACTCGGTATCCGGCTCAAGGACCGACTAATTCGAGAGACCAATCTGACTGTCCTCTAGCGGGGGCCCATTTAAATCCAGAGGCAAAACCCTATATGTTAGAAACTCAAAAACAAAAAATATATACTACAGGGACTAAAACAAAATATATAAAAAATTATAAAAAAAATATACCATAACTTCATAAGTACTAAAACAAAATGTTAAAAGGACTGAAAGAGAAAAAAAATAGGGATAAAGGTATATTACAGGGACCAAAACTGAGAATCATCTTGAGAAATGGAACATTCATGAAAGTTTAAGCATGATAAGTATTGAAATATTACATTTTTCTTTGTTCTTGACTACTGAATATTGTTTCTCCCTATTTACTGTTATAGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTAACCTAGCTATCAGAGATATAGTGACTAGTGACCCTTATGTCATCCTTTCTCTTGGTCACCAGGTGAGTTTCTTCATGTCAAAACTACTTAATACTTATCATAATGCTTGCAAAGGAAAATGTAACATTAAATATGTAACATTTTTATTATCTGATCTTGCAGTCGGTGAAGACGCGTGTCATAAAGAACAATTTAAATCCTGTTTGGAATGAAAGCCTAATGCTGTCAATTCCTGAGAACATCCCTCCTCTTAAAATAGTAAGTTGAATTTTCACCATTTTTTGTGAGCCATCATTTGAAAAATAAGCATGGAATTGGTCTTTTGGTAATTGATACCTTAATTTTACTTCTTAAGCGATGTTTTGGTTCCACTTGTGAATGAGCCTAAATTGATGCTAGTGGTGTAAATTGATTATGCCTCCTGTGTTCTTCTAACTTGTATCTAGAACTCGGAGCTTTTGCCTCTAGAGTTCAGTTGGAACTTTGTATGAACGTATACAAACAATCGTCATTTTTTGTTCAATTCACTTTTAGCTTTAATCAATGTTACAAAATCATTTTATGCAAAGTCAACTTTTGTTACCGCAAAACCAAAAACACGCACTTGATTCAATCAATTATTTTATGTTCATGACTTAAAAGAAGAGCATGGTCTTCATCTTCTGGATTTCATGTTTGATAAGATTTGGTATGATCCTTACATGCAGATTGTATACGACAAAGATTCATTCAAAAACGACGATTTTATGGGAGAGGCTGAAATAGACATTCAACCATTAGTATCAGCAGCAAAAGCATATGAGAAATCATCAATCATGGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAATACACTTGTGAAAGATGGAATAATATCTCTTGAAGAAGGGAAAGTGAGACAGGAAATCTCATTGAGGCTACAAAATGTTGAGAGAGGTGTTCTTGAAATTGAGCTTGAATGTGTTCCTCTTACTCAATAG
Protein sequence

>MS.gene65789.t1

MEMMHQEKSEINGIPGSGSSCLYDLFCTETPSLNSQSQRERWMLSGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDSLVNLGGNTLINKKYEACMPSYIKKPKPNSSIEERSDFIRRKYELQQFLDSEENLICPFIPSHARTISSSQSSSSSYNPPQEKKRYDKQTTRNRIGLSFRNSWGRKDSESKSTKKSNSLAGMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSIMESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ