Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65820.t1 | XP_003598648.1 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 4.70E-170 | 607.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65820.t1 | P51074 | 66.9 | 314 | 104 | 0 | 1 | 314 | 1 | 314 | 1.2e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65820.t1 | B7FJY0 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 3.4e-170 | 607.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene65820 | 0.842818 | 2.05E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene65820 | -0.805625 | 1.22E-49 | -1.69E-46 |
| MS.gene050710 | MS.gene65820 | 0.836307 | 1.01E-56 | -1.69E-46 |
| MS.gene050809 | MS.gene65820 | 0.812148 | 4.91E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene65820 | -0.803361 | 3.62E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene65820 | 0.812696 | 3.72E-51 | -1.69E-46 |
| MS.gene051552 | MS.gene65820 | 0.841447 | 4.73E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene65820 | -0.824226 | 9.05E-54 | -1.69E-46 |
| MS.gene051996 | MS.gene65820 | 0.803752 | 3.00E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene65820 | 0.815271 | 1.01E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene65820 | -0.812223 | 4.72E-51 | -1.69E-46 |
| MS.gene052702 | MS.gene65820 | 0.817499 | 3.20E-52 | -1.69E-46 |
| MS.gene053579 | MS.gene65820 | -0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene054107 | MS.gene65820 | -0.842614 | 2.32E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene65820 | 0.85851 | 7.84E-63 | -1.69E-46 |
| MS.gene054884 | MS.gene65820 | 0.82668 | 2.37E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene65820 | -0.80396 | 2.72E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene65820 | -0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene65820 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene65820 | -0.801584 | 8.41E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene65820 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene65820 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene056678 | MS.gene65820 | 0.811862 | 5.66E-51 | -1.69E-46 |
| MS.gene056688 | MS.gene65820 | 0.847168 | 1.37E-59 | -1.69E-46 |
| MS.gene056694 | MS.gene65820 | 0.820316 | 7.31E-53 | -1.69E-46 |
| MS.gene056697 | MS.gene65820 | 0.841615 | 4.27E-58 | -1.69E-46 |
| MS.gene056920 | MS.gene65820 | 0.826673 | 2.38E-54 | -1.69E-46 |
| MS.gene057261 | MS.gene65820 | 0.809757 | 1.62E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene65820 | 0.803329 | 3.67E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene65820 | -0.801307 | 9.58E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene65820 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene058158 | MS.gene65820 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene65820 | 0.840868 | 6.71E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene65820 | -0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene65820 | -0.819304 | 1.25E-52 | -1.69E-46 |
| MS.gene05926 | MS.gene65820 | 0.837025 | 6.63E-57 | -1.69E-46 |
| MS.gene059328 | MS.gene65820 | 0.800368 | 1.49E-48 | -1.69E-46 |
| MS.gene059512 | MS.gene65820 | -0.801907 | 7.22E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene65820 | 0.855171 | 7.55E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65820.t1 | MTR_3g018780 | 98.408 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 0.0 | 630 |
| MS.gene65820.t1 | MTR_8g038220 | 78.981 | 314 | 65 | 1 | 1 | 314 | 1 | 313 | 0.0 | 525 |
| MS.gene65820.t1 | MTR_8g038220 | 78.662 | 314 | 67 | 0 | 1 | 314 | 1 | 314 | 0.0 | 525 |
| MS.gene65820.t1 | MTR_8g038180 | 73.397 | 312 | 83 | 0 | 1 | 312 | 1 | 312 | 9.78e-171 | 476 |
| MS.gene65820.t1 | MTR_8g038210 | 72.930 | 314 | 84 | 1 | 1 | 314 | 1 | 313 | 1.96e-168 | 470 |
| MS.gene65820.t1 | MTR_8g038210 | 72.611 | 314 | 85 | 1 | 1 | 314 | 1 | 313 | 4.21e-168 | 469 |
| MS.gene65820.t1 | MTR_3g018790 | 68.790 | 314 | 98 | 0 | 1 | 314 | 1 | 314 | 3.06e-162 | 454 |
| MS.gene65820.t1 | MTR_3g018790 | 67.769 | 242 | 78 | 0 | 73 | 314 | 19 | 260 | 1.00e-121 | 350 |
| MS.gene65820.t1 | MTR_2g031980 | 46.945 | 311 | 165 | 0 | 1 | 311 | 1 | 311 | 1.61e-108 | 318 |
| MS.gene65820.t1 | MTR_5g063670 | 47.302 | 315 | 165 | 1 | 1 | 314 | 1 | 315 | 2.16e-100 | 298 |
| MS.gene65820.t1 | MTR_0276s0050 | 48.562 | 313 | 160 | 1 | 1 | 312 | 1 | 313 | 8.91e-98 | 291 |
| MS.gene65820.t1 | MTR_3g018920 | 59.615 | 208 | 52 | 1 | 1 | 208 | 1 | 176 | 2.27e-81 | 244 |
| MS.gene65820.t1 | MTR_8g038150 | 40.523 | 306 | 179 | 1 | 10 | 312 | 11 | 316 | 1.50e-75 | 234 |
| MS.gene65820.t1 | MTR_8g107640 | 38.217 | 314 | 191 | 3 | 1 | 312 | 1 | 313 | 1.06e-71 | 224 |
| MS.gene65820.t1 | MTR_6g071605 | 38.291 | 316 | 192 | 3 | 1 | 314 | 1 | 315 | 5.99e-70 | 220 |
| MS.gene65820.t1 | MTR_6g071615 | 39.241 | 316 | 189 | 3 | 1 | 314 | 1 | 315 | 2.21e-68 | 216 |
| MS.gene65820.t1 | MTR_1g033560 | 35.783 | 313 | 198 | 3 | 1 | 311 | 1 | 312 | 9.99e-65 | 206 |
| MS.gene65820.t1 | MTR_1g112520 | 36.508 | 315 | 197 | 3 | 1 | 313 | 1 | 314 | 1.45e-62 | 201 |
| MS.gene65820.t1 | MTR_6g071595 | 35.333 | 300 | 192 | 2 | 15 | 313 | 16 | 314 | 2.31e-57 | 187 |
| MS.gene65820.t1 | MTR_8g038170 | 36.709 | 316 | 175 | 6 | 14 | 312 | 5 | 312 | 2.20e-55 | 182 |
| MS.gene65820.t1 | MTR_8g038170 | 36.709 | 316 | 175 | 6 | 14 | 312 | 5 | 312 | 2.20e-55 | 182 |
| MS.gene65820.t1 | MTR_3g018925 | 64.486 | 107 | 38 | 0 | 208 | 314 | 3 | 109 | 4.29e-41 | 139 |
| MS.gene65820.t1 | MTR_6g071595 | 31.356 | 236 | 160 | 2 | 15 | 249 | 16 | 250 | 8.38e-39 | 138 |
| MS.gene65820.t1 | MTR_6g028030 | 26.389 | 288 | 204 | 4 | 33 | 312 | 23 | 310 | 1.70e-30 | 117 |
| MS.gene65820.t1 | MTR_8g038090 | 51.389 | 72 | 30 | 2 | 244 | 312 | 22 | 91 | 3.39e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65820.t1 | AT5G12380 | 53.698 | 311 | 144 | 0 | 1 | 311 | 1 | 311 | 1.04e-122 | 354 |
| MS.gene65820.t1 | AT1G35720 | 51.266 | 316 | 152 | 2 | 1 | 314 | 1 | 316 | 1.29e-109 | 321 |
| MS.gene65820.t1 | AT5G10230 | 50.159 | 315 | 155 | 2 | 1 | 314 | 1 | 314 | 1.41e-105 | 311 |
| MS.gene65820.t1 | AT5G65020 | 50.000 | 316 | 156 | 2 | 1 | 314 | 1 | 316 | 1.54e-104 | 308 |
| MS.gene65820.t1 | AT5G10220 | 49.527 | 317 | 156 | 3 | 1 | 314 | 1 | 316 | 2.30e-104 | 308 |
| MS.gene65820.t1 | AT5G65020 | 50.515 | 291 | 143 | 1 | 25 | 314 | 11 | 301 | 5.93e-99 | 293 |
| MS.gene65820.t1 | AT2G38760 | 40.881 | 318 | 181 | 3 | 1 | 311 | 1 | 318 | 1.42e-80 | 247 |
| MS.gene65820.t1 | AT1G68090 | 36.825 | 315 | 197 | 2 | 1 | 313 | 1 | 315 | 1.91e-66 | 211 |
| MS.gene65820.t1 | AT2G38750 | 34.416 | 308 | 177 | 7 | 25 | 314 | 19 | 319 | 1.29e-48 | 165 |
| MS.gene65820.t1 | AT2G38750 | 34.416 | 308 | 177 | 7 | 25 | 314 | 2 | 302 | 1.40e-48 | 164 |
| MS.gene65820.t1 | AT1G68090 | 35.600 | 250 | 159 | 2 | 1 | 248 | 1 | 250 | 4.72e-48 | 162 |
Find 67 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCCATTATTGCAATTT+TGG | 0.023972 | 3.2:+9277928 | MS.gene65820:CDS |
| CGCAATGCGATCAAGAAATT+TGG | 0.104840 | 3.2:+9279639 | MS.gene65820:CDS |
| GCCTCAGTTTGTGCCAATTT+TGG | 0.143057 | 3.2:-9278804 | None:intergenic |
| GAAGTTCATCCTCACTCTTT+TGG | 0.245293 | 3.2:+9279800 | MS.gene65820:CDS |
| ATGACCCAAAATTGCAATAA+TGG | 0.312567 | 3.2:-9277933 | None:intergenic |
| TTGGATTGGTGAGCTCATTT+AGG | 0.322139 | 3.2:+9278760 | MS.gene65820:CDS |
| TAGCTGTGTGCAATGTCTTT+TGG | 0.322545 | 3.2:-9279339 | None:intergenic |
| AGCAGACACATCTTCTTCTA+TGG | 0.328095 | 3.2:-9278479 | None:intergenic |
| AGATGAGATCAATCCAAAAT+TGG | 0.364053 | 3.2:+9278791 | MS.gene65820:CDS |
| TTCATCTCTGCAGAAATTGC+TGG | 0.367115 | 3.2:+9279297 | MS.gene65820:intron |
| GGTGAGCTCATTTAGGTATG+AGG | 0.370400 | 3.2:+9278767 | MS.gene65820:CDS |
| ACGTTTGTAGCGGTTATGAT+AGG | 0.400853 | 3.2:-9278455 | None:intergenic |
| GTAGTCCCCTGAGGTTTCCT+TGG | 0.401072 | 3.2:-9279775 | None:intergenic |
| GCAACAATGAAGAAGTCATT+AGG | 0.413585 | 3.2:+9278862 | MS.gene65820:CDS |
| CATCTTGAACAGGAGATGTT+TGG | 0.417110 | 3.2:-9276454 | None:intergenic |
| ACAGATTAGAAAAGCTTATG+AGG | 0.422078 | 3.2:+9277976 | MS.gene65820:CDS |
| GATTGTCACAAGGGCTGAAA+AGG | 0.459654 | 3.2:+9279689 | MS.gene65820:CDS |
| AGAGCCTCAGCATCTTGAAC+AGG | 0.477894 | 3.2:-9276464 | None:intergenic |
| AGAAATCTCTGGTGACTTTG+AGG | 0.496880 | 3.2:+9278036 | MS.gene65820:CDS |
| GCAGTCTCCAAGGAAACCTC+AGG | 0.496953 | 3.2:+9279768 | MS.gene65820:CDS |
| GCTATCAACTGAAGAGCTCT+TGG | 0.504256 | 3.2:+9278420 | MS.gene65820:CDS |
| CGTCTCGAGTCAGAAATCTC+TGG | 0.515167 | 3.2:+9278025 | MS.gene65820:CDS |
| AAAACAGCATCACGGTCTGC+AGG | 0.524079 | 3.2:-9278334 | None:intergenic |
| CACCACCGGTCATCTTCGCC+AGG | 0.524516 | 3.2:+9278504 | MS.gene65820:CDS |
| TGAACAACAATGGTGGCCAT+TGG | 0.524982 | 3.2:-9276428 | None:intergenic |
| GAAAGTGTCAAGGAAAAGAA+AGG | 0.529912 | 3.2:+9278840 | MS.gene65820:CDS |
| AAATTTGGAACCGATGAAGA+TGG | 0.530403 | 3.2:+9279654 | MS.gene65820:CDS |
| TGCCATGTTCATCTCGATAA+CGG | 0.533113 | 3.2:-9278929 | None:intergenic |
| ACATGGCATCTCCATTAGTA+AGG | 0.533720 | 3.2:+9278944 | MS.gene65820:CDS |
| GTGAGCTCATTTAGGTATGA+GGG | 0.545690 | 3.2:+9278768 | MS.gene65820:CDS |
| ACTTGCCTGGCGAAGATGAC+CGG | 0.547219 | 3.2:-9278509 | None:intergenic |
| TCCAAAATTGGCACAAACTG+AGG | 0.551400 | 3.2:+9278803 | MS.gene65820:CDS |
| TTATACAGAGGGCTGTGTAC+CGG | 0.553484 | 3.2:+9278299 | MS.gene65820:intron |
| GCTCTCCGACTTGCTTTCAA+AGG | 0.560633 | 3.2:+9276482 | MS.gene65820:CDS |
| AAGGGCTGAAAAGGATCTGA+AGG | 0.565968 | 3.2:+9279698 | MS.gene65820:CDS |
| ATCTCCTGTTCAAGATGCTG+AGG | 0.576916 | 3.2:+9276460 | MS.gene65820:CDS |
| AAGTTGAGTCTTGCTCCTTG+TGG | 0.582635 | 3.2:-9278892 | None:intergenic |
| TCTTGAAGATGCAGTCTCCA+AGG | 0.582711 | 3.2:+9279758 | MS.gene65820:CDS |
| AGGATGGGGTGCTGATAACA+AGG | 0.586318 | 3.2:+9277910 | MS.gene65820:intron |
| ATCAATGTAGCAATCAGGAA+TGG | 0.588048 | 3.2:+9278358 | MS.gene65820:CDS |
| GGCTGTGTACCGGTGGATGT+TGG | 0.594758 | 3.2:+9278309 | MS.gene65820:CDS |
| GAACTTCTTGTAGTCCCCTG+AGG | 0.600520 | 3.2:-9279784 | None:intergenic |
| GATGTGTCTGCTCACACCAC+CGG | 0.601797 | 3.2:+9278490 | MS.gene65820:CDS |
| CAGATTAGAAAAGCTTATGA+GGG | 0.602704 | 3.2:+9277977 | MS.gene65820:CDS |
| GCGGCTCAGTCCATCTTCAT+CGG | 0.605259 | 3.2:-9279664 | None:intergenic |
| CTTCTATGGAACGTTTGTAG+CGG | 0.605599 | 3.2:-9278465 | None:intergenic |
| AACCGTTATCGAGATGAACA+TGG | 0.608246 | 3.2:+9278927 | MS.gene65820:CDS |
| CTGAAGAGCTCTTGGCAGTG+AGG | 0.609550 | 3.2:+9278428 | MS.gene65820:CDS |
| TACAGAGGGCTGTGTACCGG+TGG | 0.610055 | 3.2:+9278302 | MS.gene65820:intron |
| CTGCAGGTTCCAACATCCAC+CGG | 0.614647 | 3.2:-9278318 | None:intergenic |
| CAGCCCTTGTGACAATCACG+CGG | 0.622641 | 3.2:-9279683 | None:intergenic |
| GTCATAGAAATGTTCATCAG+AGG | 0.629014 | 3.2:+9277951 | MS.gene65820:CDS |
| TATTATTCATGAAAGTGTCA+AGG | 0.631217 | 3.2:+9278830 | MS.gene65820:CDS |
| CAGTCTCCAAGGAAACCTCA+GGG | 0.644391 | 3.2:+9279769 | MS.gene65820:CDS |
| CATGTTTCCCCAAAAGAGTG+AGG | 0.645029 | 3.2:-9279809 | None:intergenic |
| AAGGAGCAAGACTCAACTTG+TGG | 0.646109 | 3.2:+9278896 | MS.gene65820:CDS |
| TCATTAGGATTCTTACCACA+AGG | 0.647125 | 3.2:+9278877 | MS.gene65820:CDS |
| AGATTAGAAAAGCTTATGAG+GGG | 0.656382 | 3.2:+9277978 | MS.gene65820:CDS |
| ATTCACCTTTGAAAGCAAGT+CGG | 0.657051 | 3.2:-9276487 | None:intergenic |
| TGAGCCGCGTGATTGTCACA+AGG | 0.658507 | 3.2:+9279679 | MS.gene65820:CDS |
| TGCCTGGCGAAGATGACCGG+TGG | 0.667284 | 3.2:-9278506 | None:intergenic |
| GAGCCGCGTGATTGTCACAA+GGG | 0.689120 | 3.2:+9279680 | MS.gene65820:CDS |
| CATTGATCAAAACAGCATCA+CGG | 0.696529 | 3.2:-9278342 | None:intergenic |
| TGGCAACAAAGACTATCATG+TGG | 0.723538 | 3.2:+9278378 | MS.gene65820:CDS |
| AGTCTCCAAGGAAACCTCAG+GGG | 0.750846 | 3.2:+9279770 | MS.gene65820:CDS |
| TTGGCTATGAACAACAATGG+TGG | 0.770123 | 3.2:-9276435 | None:intergenic |
| TGTTTGGCTATGAACAACAA+TGG | 0.778872 | 3.2:-9276438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAACTTGTAAAA+GGG | - | chr3.2:9277125-9277144 | None:intergenic | 10.0% |
| !! | TAAAAAATTAAACTTGTAAA+AGG | - | chr3.2:9277126-9277145 | None:intergenic | 10.0% |
| !! | ATTGATTAATCATAATAATG+TGG | + | chr3.2:9276572-9276591 | MS.gene65820:intron | 15.0% |
| !!! | ATAACATACACTTTTTTTTA+AGG | + | chr3.2:9276908-9276927 | MS.gene65820:intron | 15.0% |
| !!! | ATGAAACCATTTTTTTAATT+TGG | + | chr3.2:9279064-9279083 | MS.gene65820:intron | 15.0% |
| !!! | GTTTTCTTTTCTATAAAAAA+AGG | - | chr3.2:9277284-9277303 | None:intergenic | 15.0% |
| !!! | TGAAACCATTTTTTTAATTT+GGG | + | chr3.2:9279065-9279084 | MS.gene65820:intron | 15.0% |
| !!! | TTTTTATAGAACATTTTTAC+CGG | + | chr3.2:9277140-9277159 | MS.gene65820:intron | 15.0% |
| !! | ACCATTAATTTATTCATCAA+CGG | - | chr3.2:9278137-9278156 | None:intergenic | 20.0% |
| !! | ATCAAATAATAGGTAAAAAG+AGG | - | chr3.2:9278259-9278278 | None:intergenic | 20.0% |
| !! | GACGAAAAATAATTGAAAAA+AGG | + | chr3.2:9279259-9279278 | MS.gene65820:intron | 20.0% |
| !! | TAAAATGAGATATTTGATGA+TGG | - | chr3.2:9279423-9279442 | None:intergenic | 20.0% |
| !! | TACAACTATAATAAAAACCA+TGG | - | chr3.2:9278699-9278718 | None:intergenic | 20.0% |
| !!! | ATAAAAATTATTGAGCATTG+AGG | - | chr3.2:9278651-9278670 | None:intergenic | 20.0% |
| !!! | ATAATTTTCCAATTATGTGT+AGG | + | chr3.2:9279611-9279630 | MS.gene65820:intron | 20.0% |
| !!! | CAAAAAGTACATCAAATAAT+AGG | - | chr3.2:9278269-9278288 | None:intergenic | 20.0% |
| !!! | CTTTAAAGAAAATATATCTC+TGG | - | chr3.2:9276666-9276685 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCCGAAAATA+AGG | - | chr3.2:9276807-9276826 | None:intergenic | 20.0% |
| !!! | GAAACCATTTTTTTAATTTG+GGG | + | chr3.2:9279066-9279085 | MS.gene65820:intron | 20.0% |
| !!! | TCGGAAAAAAAAAAGATTTT+AGG | + | chr3.2:9276812-9276831 | MS.gene65820:intron | 20.0% |
| !!! | TTTATTTATTTGATGATGCT+AGG | + | chr3.2:9276544-9276563 | MS.gene65820:intron | 20.0% |
| !!! | TTTATTTTGTACCTTACTAA+TGG | - | chr3.2:9278958-9278977 | None:intergenic | 20.0% |
| !!! | TTTCAATTATTTTTCGTCAA+AGG | - | chr3.2:9279257-9279276 | None:intergenic | 20.0% |
| ! | AAAAATACTATGAGAAGGTT+AGG | + | chr3.2:9279383-9279402 | MS.gene65820:intron | 25.0% |
| ! | AGGAACATAAAAAAAGCTTA+TGG | - | chr3.2:9277208-9277227 | None:intergenic | 25.0% |
| ! | ATGGTTTCATAAAAGACATT+CGG | - | chr3.2:9279054-9279073 | None:intergenic | 25.0% |
| ! | CATTCCCCAAATTAAAAAAA+TGG | - | chr3.2:9279073-9279092 | None:intergenic | 25.0% |
| ! | TACAATTTGAGAAATCAAAC+CGG | - | chr3.2:9277162-9277181 | None:intergenic | 25.0% |
| ! | TGAATGAATAATCAATACCA+AGG | - | chr3.2:9277363-9277382 | None:intergenic | 25.0% |
| ! | TGTCATATAGGACATTTATT+TGG | - | chr3.2:9279548-9279567 | None:intergenic | 25.0% |
| !! | AAATCACTAAATTTTCTCCA+TGG | + | chr3.2:9279519-9279538 | MS.gene65820:intron | 25.0% |
| !! | ACCGTTGATGAATAAATTAA+TGG | + | chr3.2:9278133-9278152 | MS.gene65820:intron | 25.0% |
| !! | ATTTCTTTTAAGCAAAGTCT+CGG | - | chr3.2:9277847-9277866 | None:intergenic | 25.0% |
| !! | GTATAATCTTGTTATACAGA+GGG | + | chr3.2:9278288-9278307 | MS.gene65820:intron | 25.0% |
| !! | TCTCAATGATTTTGTCATAT+AGG | - | chr3.2:9279560-9279579 | None:intergenic | 25.0% |
| !! | TGTATAATCTTGTTATACAG+AGG | + | chr3.2:9278287-9278306 | MS.gene65820:intron | 25.0% |
| !!! | AACAACAATTTTGATGAACA+AGG | - | chr3.2:9279208-9279227 | None:intergenic | 25.0% |
| !!! | ACTTTTTCCATTTACAGATA+AGG | + | chr3.2:9278980-9278999 | MS.gene65820:intron | 25.0% |
| !!! | ATTTATTTTTCAAACTCTGC+AGG | + | chr3.2:9277890-9277909 | MS.gene65820:intron | 25.0% |
| !!! | ATTTTAACCATGCTAGATTA+TGG | + | chr3.2:9276613-9276632 | MS.gene65820:intron | 25.0% |
| !!! | TATTATTCATGAAAGTGTCA+AGG | + | chr3.2:9278830-9278849 | MS.gene65820:CDS | 25.0% |
| AACAGATATCTCAACTATGT+TGG | - | chr3.2:9279008-9279027 | None:intergenic | 30.0% | |
| AATAATCAATACCAAGGTCT+TGG | - | chr3.2:9277357-9277376 | None:intergenic | 30.0% | |
| ACAGATTAGAAAAGCTTATG+AGG | + | chr3.2:9277976-9277995 | MS.gene65820:CDS | 30.0% | |
| AGATGAGATCAATCCAAAAT+TGG | + | chr3.2:9278791-9278810 | MS.gene65820:CDS | 30.0% | |
| AGATTAGAAAAGCTTATGAG+GGG | + | chr3.2:9277978-9277997 | MS.gene65820:CDS | 30.0% | |
| AGGAACATAAAAAGAGCTTA+TGG | - | chr3.2:9277246-9277265 | None:intergenic | 30.0% | |
| ATGACCCAAAATTGCAATAA+TGG | - | chr3.2:9277936-9277955 | None:intergenic | 30.0% | |
| ATTCATTCAATAATAACGCC+AGG | + | chr3.2:9277374-9277393 | MS.gene65820:intron | 30.0% | |
| CAGATTAGAAAAGCTTATGA+GGG | + | chr3.2:9277977-9277996 | MS.gene65820:CDS | 30.0% | |
| CATATCCTAGCTAACAAAAA+TGG | - | chr3.2:9277306-9277325 | None:intergenic | 30.0% | |
| CCACAAAAAATACTATGAGA+AGG | + | chr3.2:9279378-9279397 | MS.gene65820:CDS | 30.0% | |
| CTTATGATTGATCAATGTGA+TGG | + | chr3.2:9277692-9277711 | MS.gene65820:intron | 30.0% | |
| GGTTCAAGTCAAATGTAAAA+TGG | - | chr3.2:9279131-9279150 | None:intergenic | 30.0% | |
| TACTACGTAACACCATTTAT+GGG | + | chr3.2:9277419-9277438 | MS.gene65820:intron | 30.0% | |
| TCTTGGTATTTAGTTGAACT+GGG | - | chr3.2:9277340-9277359 | None:intergenic | 30.0% | |
| TGTCACAAATGATGTTTAAG+CGG | + | chr3.2:9278542-9278561 | MS.gene65820:intron | 30.0% | |
| TTTATGGGTAGTAAACAAAC+AGG | - | chr3.2:9276739-9276758 | None:intergenic | 30.0% | |
| ! | AAGGCCATTATTGCAATTTT+GGG | + | chr3.2:9277929-9277948 | MS.gene65820:CDS | 30.0% |
| ! | ATTGAGGCACTAATACATTA+TGG | - | chr3.2:9278635-9278654 | None:intergenic | 30.0% |
| ! | CAGATCACAATTTAAAACCA+TGG | + | chr3.2:9278679-9278698 | MS.gene65820:intron | 30.0% |
| ! | TTTCTTTTAAGCAAAGTCTC+GGG | - | chr3.2:9277846-9277865 | None:intergenic | 30.0% |
| ! | TTTTGATCAATGTAGCAATC+AGG | + | chr3.2:9278353-9278372 | MS.gene65820:CDS | 30.0% |
| !! | AAAGGTTAACTTTTTCTGAG+AGG | - | chr3.2:9277266-9277285 | None:intergenic | 30.0% |
| !! | AAGTGAGTTGGTCAATTTAA+AGG | - | chr3.2:9278089-9278108 | None:intergenic | 30.0% |
| !! | ATTATTTTTCGTCAAAGGTG+TGG | - | chr3.2:9279252-9279271 | None:intergenic | 30.0% |
| !! | GAAAACCATTTTTGTTAGCT+AGG | + | chr3.2:9277298-9277317 | MS.gene65820:intron | 30.0% |
| !! | TGAGATATTTGATGATGGAA+AGG | - | chr3.2:9279418-9279437 | None:intergenic | 30.0% |
| !!! | CCTTCTCATAGTATTTTTTG+TGG | - | chr3.2:9279381-9279400 | None:intergenic | 30.0% |
| !!! | TTGTGTTAGCTCCTTATTTT+CGG | + | chr3.2:9276793-9276812 | MS.gene65820:intron | 30.0% |
| AACATCAAACTCAGTCGAAT+CGG | + | chr3.2:9278574-9278593 | MS.gene65820:intron | 35.0% | |
| AACTCATCCATAATCTAGCA+TGG | - | chr3.2:9276623-9276642 | None:intergenic | 35.0% | |
| ACAACGTCAAATTGTTACCA+TGG | + | chr3.2:9279167-9279186 | MS.gene65820:intron | 35.0% | |
| ACTACGTAACACCATTTATG+GGG | + | chr3.2:9277420-9277439 | MS.gene65820:intron | 35.0% | |
| AGCTATAGTGCTATGTTAGT+AGG | - | chr3.2:9277516-9277535 | None:intergenic | 35.0% | |
| ATCAATGTAGCAATCAGGAA+TGG | + | chr3.2:9278358-9278377 | MS.gene65820:CDS | 35.0% | |
| ATTCAATAATAACGCCAGGT+AGG | + | chr3.2:9277378-9277397 | MS.gene65820:intron | 35.0% | |
| CATTGATCAAAACAGCATCA+CGG | - | chr3.2:9278345-9278364 | None:intergenic | 35.0% | |
| CGAATCGGATTATGACATAA+TGG | + | chr3.2:9278589-9278608 | MS.gene65820:intron | 35.0% | |
| CTACTACGTAACACCATTTA+TGG | + | chr3.2:9277418-9277437 | MS.gene65820:intron | 35.0% | |
| GCAACAATGAAGAAGTCATT+AGG | + | chr3.2:9278862-9278881 | MS.gene65820:CDS | 35.0% | |
| GTCATAGAAATGTTCATCAG+AGG | + | chr3.2:9277951-9277970 | MS.gene65820:CDS | 35.0% | |
| GTCTTGGTATTTAGTTGAAC+TGG | - | chr3.2:9277341-9277360 | None:intergenic | 35.0% | |
| TAACACCATTTATGGGGATA+AGG | + | chr3.2:9277426-9277445 | MS.gene65820:intron | 35.0% | |
| TATGGTATCTCAAATCTGAG+AGG | - | chr3.2:9277228-9277247 | None:intergenic | 35.0% | |
| TCAACTAAATACCAAGACCT+TGG | + | chr3.2:9277343-9277362 | MS.gene65820:intron | 35.0% | |
| TCATTAGGATTCTTACCACA+AGG | + | chr3.2:9278877-9278896 | MS.gene65820:CDS | 35.0% | |
| TGCTGCAAGTAAAGAACATA+AGG | - | chr3.2:9277022-9277041 | None:intergenic | 35.0% | |
| TGTTTGGCTATGAACAACAA+TGG | - | chr3.2:9276441-9276460 | None:intergenic | 35.0% | |
| ! | AAATTTGGAACCGATGAAGA+TGG | + | chr3.2:9279654-9279673 | MS.gene65820:CDS | 35.0% |
| ! | AAGTTCATCCTCACTCTTTT+GGG | + | chr3.2:9279801-9279820 | MS.gene65820:CDS | 35.0% |
| ! | ACAATAAAGAATGACTTGCC+TGG | - | chr3.2:9278525-9278544 | None:intergenic | 35.0% |
| ! | ATTCACCTTTGAAAGCAAGT+CGG | - | chr3.2:9276490-9276509 | None:intergenic | 35.0% |
| ! | CAAGGCCATTATTGCAATTT+TGG | + | chr3.2:9277928-9277947 | MS.gene65820:CDS | 35.0% |
| ! | GTTGTAAATCTAAAGCGACA+GGG | - | chr3.2:9279152-9279171 | None:intergenic | 35.0% |
| !! | ATTTTTCAAACTCTGCAGGA+TGG | + | chr3.2:9277894-9277913 | MS.gene65820:intron | 35.0% |
| !! | CATAAATGGTGTTACGTAGT+AGG | - | chr3.2:9277420-9277439 | None:intergenic | 35.0% |
| !! | GAAAGTGTCAAGGAAAAGAA+AGG | + | chr3.2:9278840-9278859 | MS.gene65820:CDS | 35.0% |
| !! | TTTTTCAAACTCTGCAGGAT+GGG | + | chr3.2:9277895-9277914 | MS.gene65820:intron | 35.0% |
| !!! | CTAAGTTGTTTTTTCCTACC+TGG | - | chr3.2:9277395-9277414 | None:intergenic | 35.0% |
| AACCGTTATCGAGATGAACA+TGG | + | chr3.2:9278927-9278946 | MS.gene65820:CDS | 40.0% | |
| ACATGGCATCTCCATTAGTA+AGG | + | chr3.2:9278944-9278963 | MS.gene65820:CDS | 40.0% | |
| ACGTTTGTAGCGGTTATGAT+AGG | - | chr3.2:9278458-9278477 | None:intergenic | 40.0% | |
| AGAAATCTCTGGTGACTTTG+AGG | + | chr3.2:9278036-9278055 | MS.gene65820:CDS | 40.0% | |
| AGCAGACACATCTTCTTCTA+TGG | - | chr3.2:9278482-9278501 | None:intergenic | 40.0% | |
| CATCTTGAACAGGAGATGTT+TGG | - | chr3.2:9276457-9276476 | None:intergenic | 40.0% | |
| CGCAATGCGATCAAGAAATT+TGG | + | chr3.2:9279639-9279658 | MS.gene65820:CDS | 40.0% | |
| CTTCTATGGAACGTTTGTAG+CGG | - | chr3.2:9278468-9278487 | None:intergenic | 40.0% | |
| GATTCGACTGAGTTTGATGT+TGG | - | chr3.2:9278575-9278594 | None:intergenic | 40.0% | |
| GCGCAAAACCTACACATAAT+TGG | - | chr3.2:9279622-9279641 | None:intergenic | 40.0% | |
| GTGAGCTCATTTAGGTATGA+GGG | + | chr3.2:9278768-9278787 | MS.gene65820:CDS | 40.0% | |
| GTTGGCACCTTATCTGTAAA+TGG | - | chr3.2:9278990-9279009 | None:intergenic | 40.0% | |
| TATGGGGATAAGGCTAACTT+CGG | + | chr3.2:9277436-9277455 | MS.gene65820:intron | 40.0% | |
| TCCAAAATTGGCACAAACTG+AGG | + | chr3.2:9278803-9278822 | MS.gene65820:CDS | 40.0% | |
| TGCCATGTTCATCTCGATAA+CGG | - | chr3.2:9278932-9278951 | None:intergenic | 40.0% | |
| TGGCAACAAAGACTATCATG+TGG | + | chr3.2:9278378-9278397 | MS.gene65820:CDS | 40.0% | |
| TTCATCTCTGCAGAAATTGC+TGG | + | chr3.2:9279297-9279316 | MS.gene65820:intron | 40.0% | |
| TTGGCTATGAACAACAATGG+TGG | - | chr3.2:9276438-9276457 | None:intergenic | 40.0% | |
| ! | AGTTCATCCTCACTCTTTTG+GGG | + | chr3.2:9279802-9279821 | MS.gene65820:CDS | 40.0% |
| ! | CGTTGTAAATCTAAAGCGAC+AGG | - | chr3.2:9279153-9279172 | None:intergenic | 40.0% |
| ! | CTTTAGCGTCTAAAGTGAGT+TGG | - | chr3.2:9278101-9278120 | None:intergenic | 40.0% |
| ! | GAAGTTCATCCTCACTCTTT+TGG | + | chr3.2:9279800-9279819 | MS.gene65820:CDS | 40.0% |
| ! | GATTTTGAGCAGCTTTTGGT+TGG | + | chr3.2:9278741-9278760 | MS.gene65820:intron | 40.0% |
| ! | GGACATTTATTTGGTAGCCA+TGG | - | chr3.2:9279539-9279558 | None:intergenic | 40.0% |
| ! | TAGCTGTGTGCAATGTCTTT+TGG | - | chr3.2:9279342-9279361 | None:intergenic | 40.0% |
| ! | TTTTCAAACTCTGCAGGATG+GGG | + | chr3.2:9277896-9277915 | MS.gene65820:intron | 40.0% |
| !! | GTTAGCCTTATCCCCATAAA+TGG | - | chr3.2:9277434-9277453 | None:intergenic | 40.0% |
| !! | TTGGATTGGTGAGCTCATTT+AGG | + | chr3.2:9278760-9278779 | MS.gene65820:CDS | 40.0% |
| AAGGAGCAAGACTCAACTTG+TGG | + | chr3.2:9278896-9278915 | MS.gene65820:CDS | 45.0% | |
| AAGGGCTGAAAAGGATCTGA+AGG | + | chr3.2:9279698-9279717 | MS.gene65820:CDS | 45.0% | |
| AAGTTGAGTCTTGCTCCTTG+TGG | - | chr3.2:9278895-9278914 | None:intergenic | 45.0% | |
| AATGTGACTTCCGGATACTG+AGG | - | chr3.2:9277747-9277766 | None:intergenic | 45.0% | |
| ATCTCCTGTTCAAGATGCTG+AGG | + | chr3.2:9276460-9276479 | MS.gene65820:CDS | 45.0% | |
| CATGTTTCCCCAAAAGAGTG+AGG | - | chr3.2:9279812-9279831 | None:intergenic | 45.0% | |
| CATTCGGCATGCAAAGATGT+CGG | - | chr3.2:9279038-9279057 | None:intergenic | 45.0% | |
| GAGTCTAGATCCTCAGTATC+CGG | + | chr3.2:9277734-9277753 | MS.gene65820:intron | 45.0% | |
| GATTGTCACAAGGGCTGAAA+AGG | + | chr3.2:9279689-9279708 | MS.gene65820:CDS | 45.0% | |
| GCTATCAACTGAAGAGCTCT+TGG | + | chr3.2:9278420-9278439 | MS.gene65820:CDS | 45.0% | |
| GGTGAGCTCATTTAGGTATG+AGG | + | chr3.2:9278767-9278786 | MS.gene65820:CDS | 45.0% | |
| TCGGAGTCTAATGTGACTTC+CGG | - | chr3.2:9277756-9277775 | None:intergenic | 45.0% | |
| TCTTGAAGATGCAGTCTCCA+AGG | + | chr3.2:9279758-9279777 | MS.gene65820:CDS | 45.0% | |
| TTATACAGAGGGCTGTGTAC+CGG | + | chr3.2:9278299-9278318 | MS.gene65820:intron | 45.0% | |
| ! | ATGAGTCGGTGGGTTCATAT+AGG | + | chr3.2:9277784-9277803 | MS.gene65820:intron | 45.0% |
| ! | GCCTCAGTTTGTGCCAATTT+TGG | - | chr3.2:9278807-9278826 | None:intergenic | 45.0% |
| ! | GCGTGATTTTGAGCAGCTTT+TGG | + | chr3.2:9278737-9278756 | MS.gene65820:intron | 45.0% |
| ! | TTATGAGGGGCTTTTCGAAG+AGG | + | chr3.2:9277991-9278010 | MS.gene65820:CDS | 45.0% |
| !! | TGAGCAGCTTTTGGTTGGAT+TGG | + | chr3.2:9278746-9278765 | MS.gene65820:intron | 45.0% |
| !! | TTAAATGTTATAAAAAAAAA+TGG | - | chr3.2:9277073-9277092 | None:intergenic | 5.0% |
| !!! | TTTTAAAATTTGATTTTTAT+GGG | - | chr3.2:9276754-9276773 | None:intergenic | 5.0% |
| !!! | TTTTTAAAATTTGATTTTTA+TGG | - | chr3.2:9276755-9276774 | None:intergenic | 5.0% |
| AAAACAGCATCACGGTCTGC+AGG | - | chr3.2:9278337-9278356 | None:intergenic | 50.0% | |
| AGAGCCTCAGCATCTTGAAC+AGG | - | chr3.2:9276467-9276486 | None:intergenic | 50.0% | |
| AGTCTCCAAGGAAACCTCAG+GGG | + | chr3.2:9279770-9279789 | MS.gene65820:CDS | 50.0% | |
| CAGTCTCCAAGGAAACCTCA+GGG | + | chr3.2:9279769-9279788 | MS.gene65820:CDS | 50.0% | |
| CGTCTCGAGTCAGAAATCTC+TGG | + | chr3.2:9278025-9278044 | MS.gene65820:CDS | 50.0% | |
| CTCCGACCAGTCTAATGAGT+CGG | + | chr3.2:9277770-9277789 | MS.gene65820:intron | 50.0% | |
| GAACTTCTTGTAGTCCCCTG+AGG | - | chr3.2:9279787-9279806 | None:intergenic | 50.0% | |
| GACCAGTCTAATGAGTCGGT+GGG | + | chr3.2:9277774-9277793 | MS.gene65820:intron | 50.0% | |
| ! | GCTCTCCGACTTGCTTTCAA+AGG | + | chr3.2:9276482-9276501 | MS.gene65820:CDS | 50.0% |
| !! | AACCCACCGACTCATTAGAC+TGG | - | chr3.2:9277779-9277798 | None:intergenic | 50.0% |
| !! | AGGATGGGGTGCTGATAACA+AGG | + | chr3.2:9277910-9277929 | MS.gene65820:intron | 50.0% |
| !! | CACCGACTCATTAGACTGGT+CGG | - | chr3.2:9277775-9277794 | None:intergenic | 50.0% |
| ACTTGCCTGGCGAAGATGAC+CGG | - | chr3.2:9278512-9278531 | None:intergenic | 55.0% | |
| CAGCCCTTGTGACAATCACG+CGG | - | chr3.2:9279686-9279705 | None:intergenic | 55.0% | |
| CGACCAGTCTAATGAGTCGG+TGG | + | chr3.2:9277773-9277792 | MS.gene65820:intron | 55.0% | |
| CTGAAGAGCTCTTGGCAGTG+AGG | + | chr3.2:9278428-9278447 | MS.gene65820:CDS | 55.0% | |
| CTGCAGGTTCCAACATCCAC+CGG | - | chr3.2:9278321-9278340 | None:intergenic | 55.0% | |
| GAGCCGCGTGATTGTCACAA+GGG | + | chr3.2:9279680-9279699 | MS.gene65820:CDS | 55.0% | |
| GATGTGTCTGCTCACACCAC+CGG | + | chr3.2:9278490-9278509 | MS.gene65820:CDS | 55.0% | |
| GCAGTCTCCAAGGAAACCTC+AGG | + | chr3.2:9279768-9279787 | MS.gene65820:CDS | 55.0% | |
| GCGGCTCAGTCCATCTTCAT+CGG | - | chr3.2:9279667-9279686 | None:intergenic | 55.0% | |
| GGCAAATTGCTGTCGTGCCA+TGG | - | chr3.2:9279187-9279206 | None:intergenic | 55.0% | |
| GTAGTCCCCTGAGGTTTCCT+TGG | - | chr3.2:9279778-9279797 | None:intergenic | 55.0% | |
| TGAGCCGCGTGATTGTCACA+AGG | + | chr3.2:9279679-9279698 | MS.gene65820:CDS | 55.0% | |
| TACAGAGGGCTGTGTACCGG+TGG | + | chr3.2:9278302-9278321 | MS.gene65820:intron | 60.0% | |
| ! | GGCTGTGTACCGGTGGATGT+TGG | + | chr3.2:9278309-9278328 | MS.gene65820:CDS | 60.0% |
| CACCACCGGTCATCTTCGCC+AGG | + | chr3.2:9278504-9278523 | MS.gene65820:CDS | 65.0% | |
| TGCCTGGCGAAGATGACCGG+TGG | - | chr3.2:9278509-9278528 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9276431 | 9279836 | 9276431 | ID=MS.gene65820 |
| chr3.2 | mRNA | 9276431 | 9279836 | 9276431 | ID=MS.gene65820.t1;Parent=MS.gene65820 |
| chr3.2 | exon | 9276431 | 9276503 | 9276431 | ID=MS.gene65820.t1.exon1;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9276431 | 9276503 | 9276431 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| chr3.2 | exon | 9277912 | 9278057 | 9277912 | ID=MS.gene65820.t1.exon2;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9277912 | 9278057 | 9277912 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| chr3.2 | exon | 9278307 | 9278525 | 9278307 | ID=MS.gene65820.t1.exon3;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9278307 | 9278525 | 9278307 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| chr3.2 | exon | 9278753 | 9278965 | 9278753 | ID=MS.gene65820.t1.exon4;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9278753 | 9278965 | 9278753 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| chr3.2 | exon | 9279310 | 9279399 | 9279310 | ID=MS.gene65820.t1.exon5;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9279310 | 9279399 | 9279310 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| chr3.2 | exon | 9279633 | 9279836 | 9279633 | ID=MS.gene65820.t1.exon6;Parent=MS.gene65820.t1 |
| chr3.2 | CDS | 9279633 | 9279836 | 9279633 | ID=cds.MS.gene65820.t1;Parent=MS.gene65820.t1 |
| Gene Sequence |
| Protein sequence |
