Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66439.t1 | KEH40022.1 | 96.9 | 318 | 10 | 0 | 1 | 318 | 1 | 318 | 2.00E-171 | 611.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66439.t1 | A0A072VDY9 | 96.9 | 318 | 10 | 0 | 1 | 318 | 1 | 318 | 1.4e-171 | 611.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene66439 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene66439 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene66439 | 0.804125 | 2.51E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene66439 | 0.834699 | 2.58E-56 | -1.69E-46 |
| MS.gene051209 | MS.gene66439 | 0.829144 | 6.07E-55 | -1.69E-46 |
| MS.gene051823 | MS.gene66439 | 0.806265 | 8.95E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene66439 | 0.807933 | 3.97E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene66439 | 0.827974 | 1.16E-54 | -1.69E-46 |
| MS.gene052675 | MS.gene66439 | 0.82648 | 2.65E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene66439 | 0.828373 | 9.32E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene66439 | 0.833252 | 5.93E-56 | -1.69E-46 |
| MS.gene054641 | MS.gene66439 | 0.80114 | 1.04E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene66439 | 0.84236 | 2.71E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene66439 | 0.839782 | 1.29E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene66439 | 0.831401 | 1.70E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene66439 | 0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene66439 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene66439 | 0.836496 | 9.04E-57 | -1.69E-46 |
| MS.gene058095 | MS.gene66439 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene058289 | MS.gene66439 | 0.824241 | 8.98E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene66439 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene66439 | 0.801584 | 8.41E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene66439 | 0.810218 | 1.29E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene66439 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene66439 | 0.831921 | 1.27E-55 | -1.69E-46 |
| MS.gene060851 | MS.gene66439 | 0.838541 | 2.70E-57 | -1.69E-46 |
| MS.gene060852 | MS.gene66439 | 0.836691 | 8.07E-57 | -1.69E-46 |
| MS.gene060932 | MS.gene66439 | 0.820293 | 7.40E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene66439 | 0.813512 | 2.47E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene66439 | 0.806307 | 8.77E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene66439 | 0.807599 | 4.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66439.t1 | MTR_1g018550 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| MS.gene66439.t1 | MTR_1g018550 | 97.152 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 0.0 | 644 |
| MS.gene66439.t1 | MTR_3g102790 | 60.180 | 334 | 108 | 6 | 1 | 318 | 1 | 325 | 3.24e-129 | 372 |
| MS.gene66439.t1 | MTR_3g102790 | 59.940 | 332 | 108 | 6 | 1 | 316 | 1 | 323 | 1.08e-127 | 368 |
| MS.gene66439.t1 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.21e-40 | 144 |
| MS.gene66439.t1 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.31e-40 | 144 |
| MS.gene66439.t1 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.38e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66439.t1 | AT1G27700 | 44.304 | 316 | 149 | 4 | 1 | 316 | 1 | 289 | 1.45e-87 | 265 |
| MS.gene66439.t1 | AT2G18860 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 3.25e-35 | 129 |
| MS.gene66439.t1 | AT4G30240 | 40.090 | 222 | 119 | 6 | 1 | 214 | 3 | 218 | 8.50e-35 | 129 |
| MS.gene66439.t1 | AT2G18860 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 1.00e-34 | 128 |
| MS.gene66439.t1 | AT2G18860 | 49.123 | 114 | 47 | 3 | 26 | 137 | 9 | 113 | 3.47e-24 | 99.8 |
Find 75 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1.4:-4661988 | MS.gene66439:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1.4:-4661989 | MS.gene66439:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1.4:+4662340 | None:intergenic |
| CATAAGGTGCCAAGTTTATC+AGG | 0.253350 | 1.4:-4661760 | MS.gene66439:CDS |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1.4:-4662028 | MS.gene66439:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1.4:-4662312 | MS.gene66439:CDS |
| GGCACCTTATGCATTGGATT+TGG | 0.302310 | 1.4:+4661772 | None:intergenic |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1.4:-4661436 | MS.gene66439:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1.4:-4661796 | MS.gene66439:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1.4:+4662341 | None:intergenic |
| CCAAGTTTATCAGGATTTCT+TGG | 0.347997 | 1.4:-4661751 | MS.gene66439:CDS |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1.4:-4661921 | MS.gene66439:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1.4:-4662709 | MS.gene66439:CDS |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1.4:-4661633 | MS.gene66439:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1.4:-4662179 | MS.gene66439:CDS |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1.4:+4661961 | None:intergenic |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1.4:+4662354 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1.4:+4662042 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1.4:+4661352 | None:intergenic |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1.4:-4661859 | MS.gene66439:CDS |
| CAGGCCGACTGTATTGCATT+TGG | 0.439081 | 1.4:+4661371 | None:intergenic |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1.4:+4662701 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1.4:-4661922 | MS.gene66439:CDS |
| CCTTTGCTTGATTGGTAAGT+CGG | 0.452824 | 1.4:-4661320 | MS.gene66439:CDS |
| AAACTTGGCACCTTATGCAT+TGG | 0.454157 | 1.4:+4661766 | None:intergenic |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1.4:-4661911 | MS.gene66439:CDS |
| CCAAGAAATCCTGATAAACT+TGG | 0.487329 | 1.4:+4661751 | None:intergenic |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1.4:-4661885 | MS.gene66439:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1.4:-4662405 | MS.gene66439:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1.4:+4661631 | None:intergenic |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1.4:-4661980 | MS.gene66439:CDS |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1.4:-4662325 | MS.gene66439:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1.4:-4661776 | MS.gene66439:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1.4:+4661726 | None:intergenic |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1.4:-4662052 | MS.gene66439:CDS |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1.4:-4662157 | MS.gene66439:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1.4:-4662695 | MS.gene66439:intron |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1.4:-4662037 | MS.gene66439:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1.4:-4662748 | MS.gene66439:CDS |
| ATCAGGATTTCTTGGTTCCG+TGG | 0.541306 | 1.4:-4661743 | MS.gene66439:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1.4:-4661920 | MS.gene66439:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1.4:-4661714 | MS.gene66439:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1.4:-4662060 | MS.gene66439:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1.4:-4662137 | MS.gene66439:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1.4:-4661709 | MS.gene66439:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1.4:-4662308 | MS.gene66439:intron |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1.4:-4662156 | MS.gene66439:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1.4:+4661789 | None:intergenic |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1.4:+4662046 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1.4:-4661884 | MS.gene66439:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1.4:+4662309 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1.4:+4662045 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1.4:-4662038 | MS.gene66439:CDS |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1.4:+4662308 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1.4:-4661720 | MS.gene66439:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1.4:-4662749 | MS.gene66439:CDS |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1.4:-4662752 | MS.gene66439:CDS |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1.4:-4661908 | MS.gene66439:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1.4:-4661664 | MS.gene66439:CDS |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1.4:-4662399 | MS.gene66439:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1.4:-4661432 | MS.gene66439:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1.4:-4661647 | MS.gene66439:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1.4:-4661427 | MS.gene66439:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1.4:+4661320 | None:intergenic |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1.4:-4661905 | MS.gene66439:CDS |
| AATACCAAATGCAATACAGT+CGG | 0.650211 | 1.4:-4661375 | MS.gene66439:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1.4:-4661632 | MS.gene66439:intron |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1.4:+4661455 | None:intergenic |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1.4:-4661805 | MS.gene66439:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1.4:-4661895 | MS.gene66439:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1.4:+4661808 | None:intergenic |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1.4:+4661792 | None:intergenic |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1.4:-4661686 | MS.gene66439:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1.4:-4662034 | MS.gene66439:CDS |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1.4:-4661894 | MS.gene66439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTATATAATCGT+GGG | + | chr1.4:4662124-4662143 | None:intergenic | 10.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | + | chr1.4:4661395-4661414 | None:intergenic | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | + | chr1.4:4662125-4662144 | None:intergenic | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | - | chr1.4:4661481-4661500 | MS.gene66439:CDS | 15.0% |
| !!! | ATATGGTTTGATTGTTTTTT+TGG | - | chr1.4:4661844-4661863 | MS.gene66439:CDS | 20.0% |
| !!! | TCTGTATTTTTTTACTTTGT+TGG | - | chr1.4:4661507-4661526 | MS.gene66439:intron | 20.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | + | chr1.4:4662461-4662480 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | + | chr1.4:4661725-4661744 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | + | chr1.4:4661803-4661822 | None:intergenic | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | - | chr1.4:4662134-4662153 | MS.gene66439:CDS | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | - | chr1.4:4662342-4662361 | MS.gene66439:CDS | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | + | chr1.4:4661724-4661743 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | + | chr1.4:4662713-4662732 | None:intergenic | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | - | chr1.4:4661604-4661623 | MS.gene66439:intron | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | - | chr1.4:4661639-4661658 | MS.gene66439:CDS | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | - | chr1.4:4661906-4661925 | MS.gene66439:CDS | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | - | chr1.4:4662376-4662395 | MS.gene66439:CDS | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | - | chr1.4:4661533-4661552 | MS.gene66439:intron | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | - | chr1.4:4661643-4661662 | MS.gene66439:CDS | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | - | chr1.4:4661821-4661840 | MS.gene66439:CDS | 25.0% |
| AATACCAAATGCAATACAGT+CGG | - | chr1.4:4662687-4662706 | MS.gene66439:intron | 30.0% | |
| GATCATCATAAAGAAACTGA+TGG | - | chr1.4:4662398-4662417 | MS.gene66439:CDS | 30.0% | |
| GTTAAGTTATAACAGAGACT+TGG | - | chr1.4:4661905-4661924 | MS.gene66439:CDS | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | - | chr1.4:4661827-4661846 | MS.gene66439:CDS | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | - | chr1.4:4661953-4661972 | MS.gene66439:CDS | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | + | chr1.4:4662368-4662387 | None:intergenic | 30.0% |
| ! | CAATTTCGAAATTGATTCCA+CGG | + | chr1.4:4662339-4662358 | None:intergenic | 30.0% |
| !!! | GGTTTGATTGTTTTTTTGGT+GGG | - | chr1.4:4661848-4661867 | MS.gene66439:CDS | 30.0% |
| !!! | TGGTTTGATTGTTTTTTTGG+TGG | - | chr1.4:4661847-4661866 | MS.gene66439:CDS | 30.0% |
| AGAGATTTACTTACTACCCT+TGG | - | chr1.4:4661737-4661756 | MS.gene66439:CDS | 35.0% | |
| CCAAGAAATCCTGATAAACT+TGG | + | chr1.4:4662314-4662333 | None:intergenic | 35.0% | |
| CCAAGTTTATCAGGATTTCT+TGG | - | chr1.4:4662311-4662330 | MS.gene66439:CDS | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | - | chr1.4:4661657-4661676 | MS.gene66439:CDS | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | + | chr1.4:4661348-4661367 | None:intergenic | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | - | chr1.4:4661663-4661682 | MS.gene66439:CDS | 35.0% | |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | - | chr1.4:4662734-4662753 | MS.gene66439:CDS | 35.0% |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | - | chr1.4:4662210-4662229 | MS.gene66439:intron | 35.0% |
| AAACTTGGCACCTTATGCAT+TGG | + | chr1.4:4662299-4662318 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | - | chr1.4:4661367-4661386 | MS.gene66439:CDS | 40.0% | |
| AATTCAGTTGCATCTGGTGT+TGG | - | chr1.4:4662140-4662159 | MS.gene66439:CDS | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | + | chr1.4:4662610-4662629 | None:intergenic | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | - | chr1.4:4661883-4661902 | MS.gene66439:CDS | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | - | chr1.4:4662485-4662504 | MS.gene66439:intron | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | - | chr1.4:4662630-4662649 | MS.gene66439:intron | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | - | chr1.4:4662141-4662160 | MS.gene66439:CDS | 40.0% | |
| CCAAAAATACTTCCAGCATG+TGG | - | chr1.4:4661696-4661715 | MS.gene66439:CDS | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | - | chr1.4:4662742-4662761 | MS.gene66439:CDS | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | - | chr1.4:4662430-4662449 | MS.gene66439:intron | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | + | chr1.4:4661364-4661383 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | - | chr1.4:4662626-4662645 | MS.gene66439:intron | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | - | chr1.4:4662286-4662305 | MS.gene66439:intron | 40.0% | |
| TTCCAATGGCTGAATTGAAC+AGG | - | chr1.4:4662429-4662448 | MS.gene66439:intron | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | - | chr1.4:4662302-4662321 | MS.gene66439:intron | 40.0% |
| ! | TGATGGTGCACTAATTCCAA+TGG | - | chr1.4:4662415-4662434 | MS.gene66439:intron | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | - | chr1.4:4662082-4662101 | MS.gene66439:CDS | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | - | chr1.4:4662073-4662092 | MS.gene66439:CDS | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | - | chr1.4:4662074-4662093 | MS.gene66439:CDS | 40.0% |
| !! | TAGAAAGGCATCTCAGACAT+GGG | - | chr1.4:4662025-4662044 | MS.gene66439:CDS | 40.0% |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | + | chr1.4:4661696-4661715 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | + | chr1.4:4661699-4661718 | None:intergenic | 40.0% |
| AAATTGAAGTGGCCGAGGAA+TGG | - | chr1.4:4662353-4662372 | MS.gene66439:CDS | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | - | chr1.4:4662635-4662654 | MS.gene66439:intron | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | + | chr1.4:4662434-4662453 | None:intergenic | 45.0% | |
| ATCAGGATTTCTTGGTTCCG+TGG | - | chr1.4:4662319-4662338 | MS.gene66439:CDS | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | + | chr1.4:4662745-4662764 | None:intergenic | 45.0% | |
| GGCACCTTATGCATTGGATT+TGG | + | chr1.4:4662293-4662312 | None:intergenic | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | - | chr1.4:4661353-4661372 | MS.gene66439:CDS | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | - | chr1.4:4662002-4662021 | MS.gene66439:CDS | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | + | chr1.4:4661711-4661730 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | - | chr1.4:4661863-4661882 | MS.gene66439:CDS | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | - | chr1.4:4662348-4662367 | MS.gene66439:CDS | 45.0% | |
| ! | ATCTCAGACATGGGTGGTTT+TGG | - | chr1.4:4662034-4662053 | MS.gene66439:CDS | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | - | chr1.4:4662151-4662170 | MS.gene66439:CDS | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | - | chr1.4:4662142-4662161 | MS.gene66439:CDS | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | - | chr1.4:4662168-4662187 | MS.gene66439:CDS | 45.0% |
| !! | GTAGAAAGGCATCTCAGACA+TGG | - | chr1.4:4662024-4662043 | MS.gene66439:CDS | 45.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | - | chr1.4:4662551-4662570 | MS.gene66439:intron | 5.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | - | chr1.4:4662550-4662569 | MS.gene66439:intron | 5.0% |
| AACGAACCCTCCAGGTAGAA+AGG | - | chr1.4:4662010-4662029 | MS.gene66439:CDS | 50.0% | |
| ATTTGGACCAGAAGAACCGC+TGG | + | chr1.4:4662276-4662295 | None:intergenic | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | + | chr1.4:4662694-4662713 | None:intergenic | 50.0% | |
| CTACCCTTGGCACTGCTAAA+TGG | - | chr1.4:4661750-4661769 | MS.gene66439:CDS | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | + | chr1.4:4662019-4662038 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | + | chr1.4:4662020-4662039 | None:intergenic | 50.0% | |
| TGGGCGATGATGCAAGAACT+AGG | - | chr1.4:4661925-4661944 | MS.gene66439:CDS | 50.0% | |
| TGTTGGGGAAGAAAAGGAGG+AGG | - | chr1.4:4662157-4662176 | MS.gene66439:CDS | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | + | chr1.4:4661756-4661775 | None:intergenic | 50.0% |
| ! | GTCTGAGATGCCTTTCTACC+TGG | + | chr1.4:4662023-4662042 | None:intergenic | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | - | chr1.4:4662154-4662173 | MS.gene66439:CDS | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | - | chr1.4:4662028-4662047 | MS.gene66439:CDS | 50.0% |
| !! | GAAAAGGAGGAGGTATCACG+TGG | - | chr1.4:4662167-4662186 | MS.gene66439:CDS | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | - | chr1.4:4662203-4662222 | MS.gene66439:intron | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | - | chr1.4:4662041-4662060 | MS.gene66439:CDS | 50.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | - | chr1.4:4662266-4662285 | MS.gene66439:intron | 55.0% | |
| CCTTGGCACTGCTAAATGGC+AGG | - | chr1.4:4661754-4661773 | MS.gene66439:CDS | 55.0% | |
| CTGGAGGAACTAGACTGCTG+CGG | + | chr1.4:4662257-4662276 | None:intergenic | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | - | chr1.4:4661314-4661333 | MS.gene66439:CDS | 55.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | - | chr1.4:4661313-4661332 | MS.gene66439:CDS | 55.0% | |
| ! | AGGTATCACGTGGGCATCGT+AGG | - | chr1.4:4662177-4662196 | MS.gene66439:CDS | 55.0% |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | - | chr1.4:4662257-4662276 | MS.gene66439:intron | 55.0% |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | + | chr1.4:4661757-4661776 | None:intergenic | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | - | chr1.4:4662178-4662197 | MS.gene66439:CDS | 55.0% |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | + | chr1.4:4662104-4662123 | None:intergenic | 55.0% |
| TGGACCAGAAGAACCGCTGG+AGG | + | chr1.4:4662273-4662292 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4661312 | 4662772 | 4661312 | ID=MS.gene66439 |
| chr1.4 | mRNA | 4661312 | 4662772 | 4661312 | ID=MS.gene66439.t1;Parent=MS.gene66439 |
| chr1.4 | exon | 4662696 | 4662772 | 4662696 | ID=MS.gene66439.t1.exon1;Parent=MS.gene66439.t1 |
| chr1.4 | CDS | 4662696 | 4662772 | 4662696 | ID=cds.MS.gene66439.t1;Parent=MS.gene66439.t1 |
| chr1.4 | exon | 4662309 | 4662423 | 4662309 | ID=MS.gene66439.t1.exon2;Parent=MS.gene66439.t1 |
| chr1.4 | CDS | 4662309 | 4662423 | 4662309 | ID=cds.MS.gene66439.t1;Parent=MS.gene66439.t1 |
| chr1.4 | exon | 4661633 | 4662205 | 4661633 | ID=MS.gene66439.t1.exon3;Parent=MS.gene66439.t1 |
| chr1.4 | CDS | 4661633 | 4662205 | 4661633 | ID=cds.MS.gene66439.t1;Parent=MS.gene66439.t1 |
| chr1.4 | exon | 4661312 | 4661512 | 4661312 | ID=MS.gene66439.t1.exon4;Parent=MS.gene66439.t1 |
| chr1.4 | CDS | 4661312 | 4661512 | 4661312 | ID=cds.MS.gene66439.t1;Parent=MS.gene66439.t1 |
| Gene Sequence |
| Protein sequence |
