Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67287.t1 | XP_013451741.1 | 97.9 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.00E+00 | 1105.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67287.t1 | Q9FLW9 | 79.9 | 581 | 109 | 4 | 1 | 575 | 1 | 579 | 1.2e-260 | 900.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67287.t1 | A0A072U7N4 | 97.9 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.0e+00 | 1105.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene67287 | MS.gene09810 | PPI |
MS.gene67287 | MS.gene85589 | PPI |
MS.gene67287 | MS.gene007617 | PPI |
MS.gene67287 | MS.gene006868 | PPI |
MS.gene67287 | MS.gene56458 | PPI |
MS.gene67287 | MS.gene015322 | PPI |
MS.gene67287 | MS.gene82397 | PPI |
MS.gene67287 | MS.gene006867 | PPI |
MS.gene67287 | MS.gene020572 | PPI |
MS.gene67287 | MS.gene004893 | PPI |
MS.gene67287 | MS.gene22462 | PPI |
MS.gene67287 | MS.gene062243 | PPI |
MS.gene67287 | MS.gene007459 | PPI |
MS.gene67287 | MS.gene21480 | PPI |
MS.gene67287 | MS.gene47368 | PPI |
MS.gene67287 | MS.gene053108 | PPI |
MS.gene67287 | MS.gene065294 | PPI |
MS.gene67287 | MS.gene82768 | PPI |
MS.gene67287 | MS.gene07416 | PPI |
MS.gene67287 | MS.gene032695 | PPI |
MS.gene67287 | MS.gene20039 | PPI |
MS.gene67287 | MS.gene065645 | PPI |
MS.gene67287 | MS.gene059683 | PPI |
MS.gene67287 | MS.gene034948 | PPI |
MS.gene67287 | MS.gene007327 | PPI |
MS.gene67287 | MS.gene09667 | PPI |
MS.gene67287 | MS.gene56459 | PPI |
MS.gene67287 | MS.gene82398 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67287.t1 | MTR_6g034195 | 97.917 | 576 | 11 | 1 | 1 | 576 | 1 | 575 | 0.0 | 1169 |
MS.gene67287.t1 | MTR_1g099360 | 85.095 | 577 | 79 | 3 | 1 | 575 | 1 | 572 | 0.0 | 1013 |
MS.gene67287.t1 | MTR_5g014140 | 71.717 | 495 | 137 | 1 | 85 | 576 | 53 | 547 | 0.0 | 741 |
MS.gene67287.t1 | MTR_5g014140 | 76.991 | 339 | 75 | 1 | 85 | 420 | 53 | 391 | 0.0 | 540 |
MS.gene67287.t1 | MTR_1g076540 | 45.607 | 478 | 236 | 8 | 106 | 561 | 89 | 564 | 6.58e-126 | 382 |
MS.gene67287.t1 | MTR_1g105965 | 41.290 | 465 | 256 | 8 | 106 | 554 | 90 | 553 | 4.49e-112 | 346 |
MS.gene67287.t1 | MTR_4g083340 | 36.232 | 483 | 263 | 11 | 105 | 551 | 6 | 479 | 7.18e-86 | 276 |
MS.gene67287.t1 | MTR_6g004020 | 36.175 | 481 | 262 | 12 | 107 | 551 | 21 | 492 | 1.06e-84 | 273 |
MS.gene67287.t1 | MTR_7g100760 | 36.082 | 485 | 261 | 12 | 105 | 551 | 9 | 482 | 3.03e-84 | 271 |
MS.gene67287.t1 | MTR_1g105965 | 44.737 | 304 | 157 | 5 | 106 | 399 | 90 | 392 | 5.19e-79 | 255 |
MS.gene67287.t1 | MTR_4g083330 | 34.362 | 486 | 249 | 12 | 105 | 555 | 9 | 459 | 1.24e-74 | 245 |
MS.gene67287.t1 | MTR_1g091040 | 28.485 | 495 | 311 | 15 | 100 | 555 | 21 | 511 | 3.39e-46 | 170 |
MS.gene67287.t1 | MTR_7g103420 | 26.939 | 490 | 317 | 13 | 104 | 555 | 26 | 512 | 2.08e-44 | 165 |
MS.gene67287.t1 | MTR_7g103420 | 28.851 | 409 | 272 | 10 | 104 | 495 | 26 | 432 | 2.22e-43 | 163 |
MS.gene67287.t1 | MTR_1g105965 | 39.906 | 213 | 118 | 4 | 106 | 309 | 90 | 301 | 1.47e-42 | 155 |
MS.gene67287.t1 | MTR_1g061630 | 26.253 | 499 | 311 | 14 | 104 | 555 | 26 | 514 | 4.10e-42 | 159 |
MS.gene67287.t1 | MTR_1g061630 | 26.358 | 497 | 297 | 14 | 104 | 555 | 26 | 498 | 5.38e-42 | 158 |
MS.gene67287.t1 | MTR_7g103420 | 25.647 | 425 | 276 | 12 | 169 | 555 | 1 | 423 | 6.73e-32 | 128 |
MS.gene67287.t1 | MTR_1g091040 | 27.577 | 359 | 229 | 10 | 225 | 555 | 23 | 378 | 2.28e-29 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67287.t1 | AT5G52920 | 79.690 | 581 | 110 | 4 | 1 | 575 | 1 | 579 | 0.0 | 946 |
MS.gene67287.t1 | AT1G32440 | 76.695 | 472 | 109 | 1 | 105 | 576 | 98 | 568 | 0.0 | 759 |
MS.gene67287.t1 | AT3G22960 | 46.458 | 480 | 227 | 9 | 106 | 561 | 117 | 590 | 4.62e-127 | 385 |
MS.gene67287.t1 | AT3G25960 | 37.397 | 484 | 270 | 11 | 90 | 551 | 7 | 479 | 5.28e-91 | 289 |
MS.gene67287.t1 | AT3G04050 | 36.122 | 490 | 274 | 11 | 97 | 551 | 7 | 492 | 6.92e-90 | 286 |
MS.gene67287.t1 | AT3G55650 | 36.162 | 495 | 274 | 10 | 90 | 551 | 7 | 492 | 1.35e-89 | 286 |
MS.gene67287.t1 | AT5G56350 | 35.887 | 496 | 270 | 13 | 107 | 564 | 9 | 494 | 4.80e-86 | 276 |
MS.gene67287.t1 | AT4G26390 | 35.967 | 481 | 276 | 10 | 107 | 557 | 8 | 486 | 2.81e-85 | 274 |
MS.gene67287.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 5.29e-84 | 271 |
MS.gene67287.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 5.29e-84 | 271 |
MS.gene67287.t1 | AT5G63680 | 37.553 | 474 | 265 | 11 | 107 | 551 | 21 | 492 | 5.29e-84 | 271 |
MS.gene67287.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.27e-82 | 268 |
MS.gene67287.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.27e-82 | 268 |
MS.gene67287.t1 | AT5G08570 | 37.263 | 475 | 265 | 12 | 107 | 551 | 21 | 492 | 1.27e-82 | 268 |
MS.gene67287.t1 | AT3G55810 | 33.939 | 495 | 267 | 12 | 90 | 551 | 7 | 474 | 3.03e-74 | 245 |
MS.gene67287.t1 | AT2G36580 | 28.455 | 492 | 307 | 14 | 104 | 555 | 26 | 512 | 5.60e-46 | 170 |
MS.gene67287.t1 | AT3G52990 | 28.144 | 501 | 297 | 16 | 104 | 555 | 26 | 512 | 4.55e-44 | 164 |
MS.gene67287.t1 | AT3G52990 | 27.897 | 466 | 287 | 15 | 132 | 555 | 1 | 459 | 3.23e-38 | 147 |
MS.gene67287.t1 | AT3G49160 | 29.694 | 229 | 143 | 6 | 215 | 432 | 473 | 694 | 1.70e-18 | 89.7 |
MS.gene67287.t1 | AT3G49160 | 29.694 | 229 | 143 | 6 | 215 | 432 | 385 | 606 | 1.95e-18 | 89.4 |
Find 128 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTGGGATGATATCAAATT+TGG | 0.267078 | 6.2:+24782682 | MS.gene67287:CDS |
TCAAAAGTGCTCCAACAAAA+AGG | 0.272347 | 6.2:+24778273 | MS.gene67287:CDS |
CTTCACTCGAACCGGTTTCA+TGG | 0.295648 | 6.2:+24784832 | MS.gene67287:CDS |
AGAATATAATGCACAATCTA+AGG | 0.318497 | 6.2:+24779619 | MS.gene67287:CDS |
CTATGCTGTTTCCTTTGTTA+AGG | 0.329773 | 6.2:+24782726 | MS.gene67287:CDS |
GGTCAAATGCCGCCTAATAT+TGG | 0.363184 | 6.2:+24784614 | MS.gene67287:CDS |
AAAAGAGGAACCTCTTCAAT+AGG | 0.363828 | 6.2:-24783216 | None:intergenic |
TTGAGCCACTATCGTCCTTC+TGG | 0.370842 | 6.2:+24784863 | MS.gene67287:CDS |
TGCAATTATGCTTGACACTA+AGG | 0.373767 | 6.2:+24779652 | MS.gene67287:CDS |
GCAACATTGCCTTCAATAAC+TGG | 0.374098 | 6.2:+24782572 | MS.gene67287:CDS |
GAATCATCTTCAGGTGAAAC+AGG | 0.375301 | 6.2:-24778369 | None:intergenic |
CAAACCTTTGAATCATCTTC+AGG | 0.375740 | 6.2:-24778378 | None:intergenic |
TTGAACACTTGACCAATATT+AGG | 0.376811 | 6.2:-24784626 | None:intergenic |
CCGATACTAAGGAAATGATT+TGG | 0.384522 | 6.2:+24779507 | MS.gene67287:CDS |
AGGAGACATTTGAACGTTAG+AGG | 0.397461 | 6.2:+24782542 | MS.gene67287:CDS |
ACAAAGATAGTATGTACTAT+TGG | 0.400940 | 6.2:+24779476 | MS.gene67287:CDS |
TAAGGAAATGATTTGGAAGT+TGG | 0.401233 | 6.2:+24779514 | MS.gene67287:CDS |
TTGTAGTGGGGAGTGTGGTT+TGG | 0.403481 | 6.2:-24778200 | None:intergenic |
GAGCAGTTGCAACGTTTACC+TGG | 0.410065 | 6.2:+24779386 | MS.gene67287:CDS |
TGCCCAGCTGTCAAATTGAT+TGG | 0.411727 | 6.2:-24781697 | None:intergenic |
GGCTCTTCTAAACGTTTCTT+CGG | 0.412643 | 6.2:-24785408 | None:intergenic |
GTGATGATTGAATGCAAGTT+TGG | 0.422195 | 6.2:-24782941 | None:intergenic |
ACTGTTGTCTTCACTCGAAC+CGG | 0.424286 | 6.2:+24784824 | MS.gene67287:CDS |
AGTGGGGAGTGTGGTTTGGA+TGG | 0.426056 | 6.2:-24778196 | None:intergenic |
GTGAAATGTGAAGTTGTTGA+TGG | 0.430204 | 6.2:+24782503 | MS.gene67287:CDS |
ACCTCTGCTCTAGTTGGAGT+TGG | 0.436444 | 6.2:-24783590 | None:intergenic |
GGGGATATGATTCTTGTTGA+TGG | 0.436970 | 6.2:+24781808 | MS.gene67287:CDS |
GGTGATGCTTCAAATGGAAA+TGG | 0.437604 | 6.2:+24779422 | MS.gene67287:CDS |
TTACCTGGGTTGCAGACATT+TGG | 0.439799 | 6.2:+24779401 | MS.gene67287:CDS |
CATTTGACCGCCTGGTATAG+TGG | 0.444641 | 6.2:-24784600 | None:intergenic |
AAGCAAGGAATGGTGAAGAT+AGG | 0.445728 | 6.2:+24786142 | MS.gene67287:CDS |
ACATTTGGTGATGCTTCAAA+TGG | 0.449859 | 6.2:+24779416 | MS.gene67287:CDS |
TCATGTGTAGATCTTGTAGT+GGG | 0.453503 | 6.2:-24778213 | None:intergenic |
GATTTGTTGCAGAGAAGGAC+TGG | 0.453572 | 6.2:+24782665 | MS.gene67287:intron |
ATTATTGAACTTTCCTGACT+TGG | 0.454322 | 6.2:-24786231 | None:intergenic |
ATGGTTGCCAGAGGAGATCT+TGG | 0.459130 | 6.2:+24783183 | MS.gene67287:CDS |
GAAACAGGAACAACTTCAAC+AGG | 0.459137 | 6.2:-24778354 | None:intergenic |
TCCAAGAGTGTTAGACATCA+TGG | 0.461328 | 6.2:-24784795 | None:intergenic |
ATTTCCTTAGTATCGGTAGA+TGG | 0.464337 | 6.2:-24779500 | None:intergenic |
ACCATCTTTACCTGTAAAAG+AGG | 0.467255 | 6.2:-24783231 | None:intergenic |
TTTACTATTCAGAGAGGTGT+TGG | 0.468309 | 6.2:+24781730 | MS.gene67287:CDS |
CCTCTGCTCTAGTTGGAGTT+GGG | 0.471340 | 6.2:-24783589 | None:intergenic |
ACCATGATGTCTAACACTCT+TGG | 0.471654 | 6.2:+24784794 | MS.gene67287:CDS |
GAACTCTGACCAGTTATTGA+AGG | 0.473439 | 6.2:-24782581 | None:intergenic |
CAACCAATCAATTTGACAGC+TGG | 0.473718 | 6.2:+24781694 | MS.gene67287:CDS |
ATCAATTTGTGCCGTAGCAT+GGG | 0.475247 | 6.2:+24783518 | MS.gene67287:CDS |
CAAAGACTGGCTTTGTATCA+AGG | 0.477982 | 6.2:+24785350 | MS.gene67287:CDS |
TCGCTGAATTCCATGTATAC+AGG | 0.479026 | 6.2:-24785380 | None:intergenic |
CTTTCCATGAGCGGTTTCTC+CGG | 0.482467 | 6.2:-24783663 | None:intergenic |
CTCAGCACCAAGATCTCCTC+TGG | 0.484513 | 6.2:-24783190 | None:intergenic |
TCAATCATCACTGCATCTGA+TGG | 0.485246 | 6.2:+24782953 | MS.gene67287:CDS |
AAAGAGGAACCTCTTCAATA+GGG | 0.485331 | 6.2:-24783215 | None:intergenic |
AGGGAACAAGTGTTGTAGAT+TGG | 0.487374 | 6.2:+24778293 | MS.gene67287:CDS |
TAATATTGGTCAAGTGTTCA+AGG | 0.490601 | 6.2:+24784628 | MS.gene67287:CDS |
AGAAACGTTTAGAAGAGCCT+TGG | 0.494044 | 6.2:+24785412 | MS.gene67287:CDS |
AATCAATTTGTGCCGTAGCA+TGG | 0.496261 | 6.2:+24783517 | MS.gene67287:CDS |
TCTGATACCTCTGCTCTAGT+TGG | 0.498333 | 6.2:-24783596 | None:intergenic |
CCAAATCATTTCCTTAGTAT+CGG | 0.499569 | 6.2:-24779507 | None:intergenic |
AGTGGATTGGAACCTCCATA+TGG | 0.500813 | 6.2:-24786200 | None:intergenic |
CTTGGATATTGTGAGTGGAT+TGG | 0.502010 | 6.2:-24786213 | None:intergenic |
CTTCAGTTCATGAACAACTT+CGG | 0.503508 | 6.2:-24782752 | None:intergenic |
TCACCAAATGTCTGCAACCC+AGG | 0.504647 | 6.2:-24779404 | None:intergenic |
TGGACCATCTACCGATACTA+AGG | 0.505817 | 6.2:+24779496 | MS.gene67287:CDS |
CCACTCACAATATCCAAGTC+AGG | 0.506888 | 6.2:+24786218 | MS.gene67287:CDS |
TTGTCAATGATGTAGCAGTC+GGG | 0.511448 | 6.2:+24781788 | MS.gene67287:CDS |
AAAGTGGTAGGCAACCCATA+TGG | 0.516970 | 6.2:+24786185 | MS.gene67287:CDS |
CAATCATCACTGCATCTGAT+GGG | 0.519077 | 6.2:+24782954 | MS.gene67287:CDS |
CAATAAGACAGCCATGAAAC+CGG | 0.519200 | 6.2:-24784843 | None:intergenic |
AACCAATCAATTTGACAGCT+GGG | 0.519896 | 6.2:+24781695 | MS.gene67287:CDS |
TCATCAGAAAGTTATTGACT+TGG | 0.522369 | 6.2:+24779592 | MS.gene67287:CDS |
TTAGGCGGCATTTGACCGCC+TGG | 0.525161 | 6.2:-24784608 | None:intergenic |
AGGAGTTACTCCTGTATACA+TGG | 0.529828 | 6.2:+24785370 | MS.gene67287:CDS |
TGATGCACACAGTAGCGTTA+CGG | 0.532772 | 6.2:+24784570 | MS.gene67287:CDS |
TTGTGCCAGAAGGACGATAG+TGG | 0.536441 | 6.2:-24784868 | None:intergenic |
GATTGTTGCAACAAATATGC+TGG | 0.536969 | 6.2:+24783550 | MS.gene67287:CDS |
TTCATGTGTAGATCTTGTAG+TGG | 0.537199 | 6.2:-24778214 | None:intergenic |
ATTTGGAAGTTGGCTGAGGC+TGG | 0.537305 | 6.2:+24779524 | MS.gene67287:CDS |
CCTGACTTGGATATTGTGAG+TGG | 0.537961 | 6.2:-24786218 | None:intergenic |
TTCACCTGAAGATGATTCAA+AGG | 0.541908 | 6.2:+24778374 | MS.gene67287:CDS |
CGGACAGAAGCCACTATACC+AGG | 0.544854 | 6.2:+24784590 | MS.gene67287:CDS |
TGCTGAGCTCCCTATTGAAG+AGG | 0.547379 | 6.2:+24783206 | MS.gene67287:CDS |
TTTGTCAATGATGTAGCAGT+CGG | 0.549048 | 6.2:+24781787 | MS.gene67287:CDS |
AGATCTTGTAGTGGGGAGTG+TGG | 0.553424 | 6.2:-24778205 | None:intergenic |
CATATTTGTTGCAACAATCA+CGG | 0.554888 | 6.2:-24783546 | None:intergenic |
CTGTCCGGAGAAACCGCTCA+TGG | 0.561397 | 6.2:+24783659 | MS.gene67287:CDS |
TCTGATGGAATAATGCTGTC+CGG | 0.563114 | 6.2:+24783644 | MS.gene67287:CDS |
GAAGAGAGTACAACAAAGAC+TGG | 0.564047 | 6.2:+24785337 | MS.gene67287:CDS |
GCTGTTCGAGAAGGTTCTGA+TGG | 0.565731 | 6.2:+24783629 | MS.gene67287:CDS |
ATAGCTATTGCTGTTCGAGA+AGG | 0.568994 | 6.2:+24783620 | MS.gene67287:CDS |
ATGGAGGAGAGCTCAAGTCA+AGG | 0.573242 | 6.2:+24782522 | MS.gene67287:CDS |
AAATCCCCACTTCTAACCTC+AGG | 0.574845 | 6.2:-24781667 | None:intergenic |
TAGGGTCCTGAGGTTAGAAG+TGG | 0.577348 | 6.2:+24781661 | MS.gene67287:intron |
AGCAGTTGCAACGTTTACCT+GGG | 0.582426 | 6.2:+24779387 | MS.gene67287:CDS |
GCTCGTCTCAATATGTCTCA+TGG | 0.585204 | 6.2:+24779557 | MS.gene67287:CDS |
TTTGTCTTACGCTTAAACGT+CGG | 0.591655 | 6.2:-24779458 | None:intergenic |
TCACGGCCTTTCCCATGCTA+CGG | 0.593595 | 6.2:-24783529 | None:intergenic |
AGTTACCTGTAGAAAATCCA+AGG | 0.594379 | 6.2:-24785429 | None:intergenic |
ATTTGTTGCAGAGAAGGACT+GGG | 0.594927 | 6.2:+24782666 | MS.gene67287:intron |
TGTTAGACATCATGGTTGCA+TGG | 0.595924 | 6.2:-24784787 | None:intergenic |
GTGGATTGGAACCTCCATAT+GGG | 0.596108 | 6.2:-24786199 | None:intergenic |
GAAGTTGCACTTGTACAAAG+TGG | 0.596281 | 6.2:+24786169 | MS.gene67287:CDS |
GCTGTCAAATTGATTGGTTG+TGG | 0.603728 | 6.2:-24781691 | None:intergenic |
AGGTGGTATGATGTCTATGT+TGG | 0.604755 | 6.2:+24782457 | MS.gene67287:intron |
TATGTTGGTTAAGTCTAAGA+CGG | 0.606780 | 6.2:+24782472 | MS.gene67287:CDS |
GGGTCCTGAGGTTAGAAGTG+GGG | 0.606979 | 6.2:+24781663 | MS.gene67287:intron |
TTGCACTTGTACAAAGTGGT+AGG | 0.607359 | 6.2:+24786173 | MS.gene67287:CDS |
AGGGTCCTGAGGTTAGAAGT+GGG | 0.608163 | 6.2:+24781662 | MS.gene67287:intron |
GGATGATATCAAATTTGGAG+TGG | 0.610417 | 6.2:+24782687 | MS.gene67287:CDS |
GTTTAGGCTATGGTTGCCAG+AGG | 0.611936 | 6.2:+24783174 | MS.gene67287:intron |
TGTCAATGATGTAGCAGTCG+GGG | 0.612421 | 6.2:+24781789 | MS.gene67287:CDS |
AACACTTGACCAATATTAGG+CGG | 0.612576 | 6.2:-24784623 | None:intergenic |
TTTGTGCCGTAGCATGGGAA+AGG | 0.615727 | 6.2:+24783523 | MS.gene67287:CDS |
AAATGTGAAGTTGTTGATGG+AGG | 0.617326 | 6.2:+24782506 | MS.gene67287:CDS |
ATTTACTTACTTTCCATGAG+CGG | 0.619106 | 6.2:-24783672 | None:intergenic |
GATGATCATATGCAGAAGCA+AGG | 0.622028 | 6.2:+24786127 | MS.gene67287:intron |
AATGATTTGGAAGTTGGCTG+AGG | 0.623922 | 6.2:+24779520 | MS.gene67287:CDS |
AAAGCAAATATTGTGCCAGA+AGG | 0.626417 | 6.2:-24784878 | None:intergenic |
AATCATCACTGCATCTGATG+GGG | 0.635338 | 6.2:+24782955 | MS.gene67287:CDS |
CATGTGTAGATCTTGTAGTG+GGG | 0.638807 | 6.2:-24778212 | None:intergenic |
CATTGTGAAAATTGAAAGTG+CGG | 0.641051 | 6.2:+24782910 | MS.gene67287:CDS |
CCCAACTCCAACTAGAGCAG+AGG | 0.641516 | 6.2:+24783589 | MS.gene67287:CDS |
TCATATGCAGAAGCAAGGAA+TGG | 0.652939 | 6.2:+24786132 | MS.gene67287:intron |
CTTCAAATGGAAATGGAATG+TGG | 0.654911 | 6.2:+24779429 | MS.gene67287:CDS |
GTGGTAGGCAACCCATATGG+AGG | 0.656472 | 6.2:+24786188 | MS.gene67287:CDS |
AACTTCGGCATCCTTAACAA+AGG | 0.658982 | 6.2:-24782737 | None:intergenic |
TGTGGTTTGGATGGATCGTG+TGG | 0.665145 | 6.2:-24778187 | None:intergenic |
TCGAGTGAAGACAACAGTAG+AGG | 0.673798 | 6.2:-24784819 | None:intergenic |
ACAGAAGCCACTATACCAGG+CGG | 0.768241 | 6.2:+24784593 | MS.gene67287:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 24778171 | 24786252 | 24778171 | ID=MS.gene67287 |
chr6.2 | mRNA | 24778171 | 24786252 | 24778171 | ID=MS.gene67287.t1;Parent=MS.gene67287 |
chr6.2 | exon | 24778171 | 24778395 | 24778171 | ID=MS.gene67287.t1.exon1;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24778171 | 24778395 | 24778171 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24779380 | 24779673 | 24779380 | ID=MS.gene67287.t1.exon2;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24779380 | 24779673 | 24779380 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24781664 | 24781829 | 24781664 | ID=MS.gene67287.t1.exon3;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24781664 | 24781829 | 24781664 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24782459 | 24782593 | 24782459 | ID=MS.gene67287.t1.exon4;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24782459 | 24782593 | 24782459 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24782677 | 24782787 | 24782677 | ID=MS.gene67287.t1.exon5;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24782677 | 24782787 | 24782677 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24782888 | 24782976 | 24782888 | ID=MS.gene67287.t1.exon6;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24782888 | 24782976 | 24782888 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24783180 | 24783242 | 24783180 | ID=MS.gene67287.t1.exon7;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24783180 | 24783242 | 24783180 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24783509 | 24783684 | 24783509 | ID=MS.gene67287.t1.exon8;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24783509 | 24783684 | 24783509 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24784547 | 24784649 | 24784547 | ID=MS.gene67287.t1.exon9;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24784547 | 24784649 | 24784547 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24784761 | 24784909 | 24784761 | ID=MS.gene67287.t1.exon10;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24784761 | 24784909 | 24784761 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24785337 | 24785445 | 24785337 | ID=MS.gene67287.t1.exon11;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24785337 | 24785445 | 24785337 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
chr6.2 | exon | 24786142 | 24786252 | 24786142 | ID=MS.gene67287.t1.exon12;Parent=MS.gene67287.t1 |
chr6.2 | CDS | 24786142 | 24786252 | 24786142 | ID=cds.MS.gene67287.t1;Parent=MS.gene67287.t1 |
Gene Sequence |
Protein sequence |