Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71459.t1 | XP_003590780.1 | 85.7 | 676 | 95 | 2 | 1 | 675 | 1 | 675 | 0.00E+00 | 1189.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71459.t1 | Q9SS87 | 23.8 | 707 | 446 | 24 | 36 | 666 | 39 | 728 | 1.4e-45 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71459.t1 | E2FKJ1 | 85.7 | 676 | 95 | 2 | 1 | 675 | 1 | 675 | 0.0e+00 | 1189.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene71459 | 0.809498 | 1.84E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene71459 | 0.882094 | 1.39E-70 | -1.69E-46 |
| MS.gene049698 | MS.gene71459 | 0.827492 | 1.52E-54 | -1.69E-46 |
| MS.gene049989 | MS.gene71459 | 0.801414 | 9.11E-49 | -1.69E-46 |
| MS.gene05017 | MS.gene71459 | 0.83299 | 6.90E-56 | -1.69E-46 |
| MS.gene050297 | MS.gene71459 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene050310 | MS.gene71459 | 0.83565 | 1.48E-56 | -1.69E-46 |
| MS.gene051067 | MS.gene71459 | 0.847064 | 1.46E-59 | -1.69E-46 |
| MS.gene051263 | MS.gene71459 | 0.813169 | 2.93E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene71459 | 0.855656 | 5.45E-62 | -1.69E-46 |
| MS.gene053144 | MS.gene71459 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene71459 | 0.828397 | 9.20E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene71459 | 0.826234 | 3.03E-54 | -1.69E-46 |
| MS.gene054118 | MS.gene71459 | 0.844804 | 6.02E-59 | -1.69E-46 |
| MS.gene054584 | MS.gene71459 | 0.82118 | 4.63E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene71459 | 0.827633 | 1.40E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene71459 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene71459 | 0.836735 | 7.86E-57 | -1.69E-46 |
| MS.gene056520 | MS.gene71459 | 0.818265 | 2.14E-52 | -1.69E-46 |
| MS.gene056704 | MS.gene71459 | 0.817199 | 3.73E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene71459 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene058197 | MS.gene71459 | 0.828052 | 1.11E-54 | -1.69E-46 |
| MS.gene058198 | MS.gene71459 | 0.827607 | 1.42E-54 | -1.69E-46 |
| MS.gene058351 | MS.gene71459 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene058823 | MS.gene71459 | 0.817739 | 2.82E-52 | -1.69E-46 |
| MS.gene058909 | MS.gene71459 | 0.889257 | 2.85E-73 | -1.69E-46 |
| MS.gene058912 | MS.gene71459 | 0.886439 | 3.42E-72 | -1.69E-46 |
| MS.gene05894 | MS.gene71459 | 0.848085 | 7.67E-60 | -1.69E-46 |
| MS.gene059154 | MS.gene71459 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene71459 | 0.842423 | 2.61E-58 | -1.69E-46 |
| MS.gene059424 | MS.gene71459 | 0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene06057 | MS.gene71459 | 0.809419 | 1.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71459.t1 | MTR_1g075170 | 86.391 | 676 | 90 | 2 | 1 | 675 | 1 | 675 | 0.0 | 1210 |
| MS.gene71459.t1 | MTR_1g075153 | 53.608 | 679 | 294 | 9 | 5 | 675 | 6 | 671 | 0.0 | 717 |
| MS.gene71459.t1 | MTR_1g075180 | 51.459 | 651 | 289 | 12 | 27 | 669 | 7 | 638 | 0.0 | 649 |
| MS.gene71459.t1 | MTR_1g040360 | 42.815 | 675 | 349 | 13 | 19 | 666 | 13 | 677 | 6.85e-169 | 500 |
| MS.gene71459.t1 | MTR_1g074990 | 31.306 | 674 | 398 | 18 | 31 | 669 | 20 | 663 | 3.22e-99 | 318 |
| MS.gene71459.t1 | MTR_1g074950 | 33.085 | 671 | 385 | 21 | 31 | 666 | 21 | 662 | 4.23e-99 | 318 |
| MS.gene71459.t1 | MTR_1g075095 | 29.911 | 672 | 406 | 17 | 31 | 666 | 20 | 662 | 1.65e-90 | 295 |
| MS.gene71459.t1 | MTR_1g075030 | 29.674 | 674 | 405 | 19 | 31 | 666 | 20 | 662 | 2.96e-90 | 295 |
| MS.gene71459.t1 | MTR_1g075230 | 30.045 | 669 | 415 | 19 | 31 | 669 | 20 | 665 | 4.24e-87 | 286 |
| MS.gene71459.t1 | MTR_7g032660 | 26.081 | 717 | 431 | 26 | 29 | 669 | 20 | 713 | 9.34e-52 | 191 |
| MS.gene71459.t1 | MTR_3g075450 | 26.591 | 707 | 411 | 30 | 36 | 665 | 29 | 704 | 1.04e-47 | 179 |
| MS.gene71459.t1 | MTR_8g089660 | 24.507 | 710 | 432 | 28 | 36 | 667 | 21 | 704 | 2.80e-43 | 166 |
| MS.gene71459.t1 | MTR_8g063020 | 35.135 | 222 | 121 | 6 | 81 | 301 | 29 | 228 | 2.44e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71459.t1 | AT3G01680 | 24.930 | 710 | 434 | 30 | 36 | 666 | 39 | 728 | 1.57e-48 | 182 |
| MS.gene71459.t1 | AT3G01670 | 22.466 | 730 | 419 | 21 | 36 | 665 | 138 | 820 | 3.03e-36 | 146 |
| MS.gene71459.t1 | AT3G01670 | 22.466 | 730 | 419 | 21 | 36 | 665 | 162 | 844 | 3.61e-36 | 146 |
| MS.gene71459.t1 | AT1G67790 | 20.482 | 664 | 453 | 23 | 35 | 646 | 10 | 650 | 1.99e-18 | 90.1 |
Find 130 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTGTCACATTCTTAT+TGG | 0.136620 | 1.3:+53699535 | MS.gene71459:CDS |
| CAATTGCTCTTGTGAATTCT+TGG | 0.155564 | 1.3:-53702824 | None:intergenic |
| CTTGGGAGGTACCATTCTTT+TGG | 0.182584 | 1.3:-53698717 | None:intergenic |
| ATCAATATCGTCAAGCTTAA+AGG | 0.190937 | 1.3:-53698764 | None:intergenic |
| CAACAAAGATTCCATACTTT+TGG | 0.213846 | 1.3:+53702922 | MS.gene71459:CDS |
| AATCAAATGCAGCAACTATT+TGG | 0.224197 | 1.3:-53703344 | None:intergenic |
| GGATTCCCATTGTGGATAAT+TGG | 0.226633 | 1.3:+53701167 | MS.gene71459:CDS |
| GTGCAATTATGTATCTTAAT+AGG | 0.245870 | 1.3:+53699432 | MS.gene71459:CDS |
| TCAAGAAATGGGAATGGTTT+TGG | 0.249117 | 1.3:+53701710 | MS.gene71459:CDS |
| GCCATTGATTGGTACATCTT+TGG | 0.251729 | 1.3:-53698686 | None:intergenic |
| GAAAGTTGCAAAGTGGAAAT+TGG | 0.271554 | 1.3:+53699885 | MS.gene71459:CDS |
| TCTGCCTCAACTCAGATTTC+TGG | 0.271962 | 1.3:+53698874 | MS.gene71459:CDS |
| AACTCTAGCTGCATTCTCTT+TGG | 0.285355 | 1.3:+53699403 | MS.gene71459:CDS |
| CAAATACCACCAATATTTAT+AGG | 0.291356 | 1.3:+53700113 | MS.gene71459:CDS |
| GCTGCATTCTCTTTGGAGTA+TGG | 0.291746 | 1.3:+53699410 | MS.gene71459:CDS |
| TCAGCATCACTTATCCTAAA+AGG | 0.301931 | 1.3:-53701679 | None:intergenic |
| TGAATTCTTGGACCCACTTT+GGG | 0.322793 | 1.3:-53702812 | None:intergenic |
| TCTATACCCATCCAAAAGTA+TGG | 0.327507 | 1.3:-53702933 | None:intergenic |
| GGAGCTGAGATTTCTGTTCT+TGG | 0.330206 | 1.3:-53698735 | None:intergenic |
| CTGAAGATATCTTCAAGAAA+TGG | 0.331332 | 1.3:+53701698 | MS.gene71459:CDS |
| AAACCACAAGAAGTGATAAA+AGG | 0.343304 | 1.3:+53701115 | MS.gene71459:CDS |
| TCGTCAAGCTTAAAGGGATT+AGG | 0.343557 | 1.3:-53698757 | None:intergenic |
| TAACGAGTTGAGGCCTCATT+TGG | 0.343868 | 1.3:+53699863 | MS.gene71459:CDS |
| GGGTTGATCACTGCGAAAAT+AGG | 0.358665 | 1.3:-53701592 | None:intergenic |
| CAAAAGTATGGAATCTTTGT+TGG | 0.360918 | 1.3:-53702921 | None:intergenic |
| CCTGAAGAGGATTTCTTGTC+AGG | 0.368222 | 1.3:+53699064 | MS.gene71459:CDS |
| CAAGGAAAATTATCTTTCAA+TGG | 0.370179 | 1.3:+53701641 | MS.gene71459:CDS |
| GAGCTGAGATTTCTGTTCTT+GGG | 0.379012 | 1.3:-53698734 | None:intergenic |
| CGTCAAGCTTAAAGGGATTA+GGG | 0.380837 | 1.3:-53698756 | None:intergenic |
| GGATTCCTCTTGTTGTGTAT+TGG | 0.381172 | 1.3:+53699648 | MS.gene71459:CDS |
| CAAGAATTCACAAGAGCAAT+TGG | 0.389274 | 1.3:+53702825 | MS.gene71459:CDS |
| AAGGAAAATTATCTTTCAAT+GGG | 0.392951 | 1.3:+53701642 | MS.gene71459:CDS |
| GTGAATTCTTGGACCCACTT+TGG | 0.399763 | 1.3:-53702813 | None:intergenic |
| TGGGCAGCATGGTCTGCTTT+CGG | 0.406610 | 1.3:+53699581 | MS.gene71459:CDS |
| ACACGTCCACAAGTAGGATT+TGG | 0.408497 | 1.3:-53703275 | None:intergenic |
| ATCACCTCAGAGACTTCTCC+TGG | 0.410904 | 1.3:+53699363 | MS.gene71459:CDS |
| GATAGATACATATTCATCTA+TGG | 0.412586 | 1.3:+53702780 | MS.gene71459:CDS |
| AGGCAACAACCAAGTTAAAC+AGG | 0.412902 | 1.3:+53700133 | MS.gene71459:CDS |
| CTATGATTCAGGGCATGAAA+TGG | 0.422094 | 1.3:+53702757 | MS.gene71459:intron |
| TGGTTGTTGCCTATAAATAT+TGG | 0.423025 | 1.3:-53700122 | None:intergenic |
| CAGCACTAACCTGTTTAACT+TGG | 0.423065 | 1.3:-53700142 | None:intergenic |
| CCTGACAAGAAATCCTCTTC+AGG | 0.423986 | 1.3:-53699064 | None:intergenic |
| TGGGTCGTAGTGCCATTGAT+TGG | 0.424583 | 1.3:-53698697 | None:intergenic |
| AAAAGTATGGAATCTTTGTT+GGG | 0.425612 | 1.3:-53702920 | None:intergenic |
| GTCTGCTTTCGGTTATGACT+TGG | 0.426387 | 1.3:+53699592 | MS.gene71459:CDS |
| GCTACCATTGTTGCCTGTAC+TGG | 0.428950 | 1.3:+53699677 | MS.gene71459:CDS |
| GGGTGATATAAACTTTGTTA+AGG | 0.430161 | 1.3:-53698789 | None:intergenic |
| TCAATATCGTCAAGCTTAAA+GGG | 0.433331 | 1.3:-53698763 | None:intergenic |
| TTTAAATAAAAGGTATGTGT+TGG | 0.439529 | 1.3:+53701501 | MS.gene71459:intron |
| GATAAAAGGTTTCAAGAAAG+AGG | 0.440536 | 1.3:+53701129 | MS.gene71459:CDS |
| TGAAGATATCTTCAAGAAAT+GGG | 0.441441 | 1.3:+53701699 | MS.gene71459:CDS |
| CTCTTCAGGACAGAGAAGTC+TGG | 0.466217 | 1.3:-53699050 | None:intergenic |
| CACCCATGTCAAAGATTATG+AGG | 0.466569 | 1.3:+53698807 | MS.gene71459:CDS |
| GATTCCCATTGTGGATAATT+GGG | 0.467568 | 1.3:+53701168 | MS.gene71459:CDS |
| GCCTGTACTGGTAACCTTGT+CGG | 0.472360 | 1.3:+53699689 | MS.gene71459:CDS |
| TTCTCTGAGCTACCAGGGCG+TGG | 0.475211 | 1.3:+53701529 | MS.gene71459:CDS |
| ATTTCGAGATTAGACAGCAT+TGG | 0.478991 | 1.3:+53701046 | MS.gene71459:CDS |
| TCAGCCACAGTTTGATACAT+AGG | 0.485178 | 1.3:-53703107 | None:intergenic |
| CATTCATTATAACACCTTGA+GGG | 0.485580 | 1.3:-53701612 | None:intergenic |
| TGTTGGAGACAAGCTTGAAA+AGG | 0.489275 | 1.3:-53698846 | None:intergenic |
| ATTTGAAAGAAAGCATGAAA+TGG | 0.489829 | 1.3:+53701218 | MS.gene71459:CDS |
| TTCTTGAGACTTCTGATCAA+AGG | 0.489932 | 1.3:+53700077 | MS.gene71459:CDS |
| TATGATTCAGGGCATGAAAT+GGG | 0.490425 | 1.3:+53702758 | MS.gene71459:intron |
| TGCACATTCTGCTGTGCCGC+GGG | 0.492853 | 1.3:-53699315 | None:intergenic |
| GAACCTTTCTGAATTGAACT+TGG | 0.497414 | 1.3:-53699499 | None:intergenic |
| ACTTTGCAACTTTCCAAATG+AGG | 0.497491 | 1.3:-53699876 | None:intergenic |
| TCATCCCAATTATCCACAAT+GGG | 0.497534 | 1.3:-53701172 | None:intergenic |
| ACCGACAAGGTTACCAGTAC+AGG | 0.500684 | 1.3:-53699690 | None:intergenic |
| GGAATCCATTGCATAGCATC+AGG | 0.501216 | 1.3:-53699632 | None:intergenic |
| TCCAAAGATGTACCAATCAA+TGG | 0.506446 | 1.3:+53698685 | MS.gene71459:CDS |
| AGGAGAAGTCTCTGAGGTGA+TGG | 0.514175 | 1.3:-53699361 | None:intergenic |
| TGTCTCAAACAAGACCCATC+AGG | 0.516882 | 1.3:+53703032 | MS.gene71459:CDS |
| TAGCCAAGTTCAATTCAGAA+AGG | 0.519066 | 1.3:+53699496 | MS.gene71459:CDS |
| GGAGAATCCACATTGTTGTC+TGG | 0.519858 | 1.3:-53699340 | None:intergenic |
| TTCTTTATTATCCCACGCCC+TGG | 0.524143 | 1.3:-53701541 | None:intergenic |
| GAACACTTCTCTGAGCTACC+AGG | 0.528519 | 1.3:+53701523 | MS.gene71459:CDS |
| GAAAGTAGATATCAATATTG+AGG | 0.532242 | 1.3:+53701744 | MS.gene71459:CDS |
| AGTTGAGGCAGAGAGGATGT+TGG | 0.533320 | 1.3:-53698863 | None:intergenic |
| ACAAGATCAGTTATATCAGC+AGG | 0.534782 | 1.3:-53699521 | None:intergenic |
| GGCACTACGACCCAAAAGAA+TGG | 0.536228 | 1.3:+53698706 | MS.gene71459:CDS |
| TCCTACTTGTGGACGTGTGA+TGG | 0.538034 | 1.3:+53703280 | MS.gene71459:CDS |
| CTTAGAAGAGCCCATCCTGA+TGG | 0.538249 | 1.3:-53703047 | None:intergenic |
| CTGAGATTTCTGTTCTTGGG+AGG | 0.538881 | 1.3:-53698731 | None:intergenic |
| CAGACTTCTCTGTCCTGAAG+AGG | 0.553925 | 1.3:+53699051 | MS.gene71459:CDS |
| GTTGGAGACAAGCTTGAAAA+GGG | 0.555938 | 1.3:-53698845 | None:intergenic |
| AGACTTCTGATCAAAGGCAA+TGG | 0.558021 | 1.3:+53700083 | MS.gene71459:CDS |
| TTCCTCATAATCTTTGACAT+GGG | 0.560884 | 1.3:-53698809 | None:intergenic |
| GACATTGATTACCACCAACT+AGG | 0.560987 | 1.3:+53702888 | MS.gene71459:CDS |
| ATTCCTCATAATCTTTGACA+TGG | 0.565424 | 1.3:-53698810 | None:intergenic |
| TTAGAAGAGCCCATCCTGAT+GGG | 0.565802 | 1.3:-53703046 | None:intergenic |
| TTCATCCCAATTATCCACAA+TGG | 0.566307 | 1.3:-53701173 | None:intergenic |
| TCATTCATTATAACACCTTG+AGG | 0.567246 | 1.3:-53701613 | None:intergenic |
| TTATAATGAATGAGAATGCA+AGG | 0.574786 | 1.3:+53701623 | MS.gene71459:CDS |
| TTGTTGCCTATAAATATTGG+TGG | 0.577295 | 1.3:-53700119 | None:intergenic |
| GTGCACATTCTGCTGTGCCG+CGG | 0.581489 | 1.3:-53699316 | None:intergenic |
| CTTTGCCTGATGCTATGCAA+TGG | 0.584464 | 1.3:+53699627 | MS.gene71459:CDS |
| ACTGTCCAATACACAACAAG+AGG | 0.585978 | 1.3:-53699653 | None:intergenic |
| TCAAACAAGACCCATCAGGA+TGG | 0.586004 | 1.3:+53703036 | MS.gene71459:CDS |
| ATGTGGTGGTTAACGAGTTG+AGG | 0.588601 | 1.3:+53699853 | MS.gene71459:CDS |
| GGATGGGCTCTTCTAAGTAG+AGG | 0.593803 | 1.3:+53703053 | MS.gene71459:CDS |
| CAAACAAGACCCATCAGGAT+GGG | 0.596159 | 1.3:+53703037 | MS.gene71459:CDS |
| ATATCTTCAAGAAATGGGAA+TGG | 0.602647 | 1.3:+53701704 | MS.gene71459:CDS |
| ACTTGTCCAAATCCTACTTG+TGG | 0.603163 | 1.3:+53703269 | MS.gene71459:CDS |
| ATGGAGGCAACGACCCAAAG+TGG | 0.604064 | 1.3:+53702799 | MS.gene71459:CDS |
| AGTTCCAGAAATCTGAGTTG+AGG | 0.604866 | 1.3:-53698878 | None:intergenic |
| TACATCTTTGGACAATGCAG+TGG | 0.608358 | 1.3:-53698674 | None:intergenic |
| ACATTAAACAGTGGGCAGCA+TGG | 0.610506 | 1.3:+53699570 | MS.gene71459:CDS |
| ATTCAATCATCAGACACACT+TGG | 0.616321 | 1.3:+53699455 | MS.gene71459:CDS |
| TTTGGACAATGCAGTGGACA+TGG | 0.617395 | 1.3:-53698668 | None:intergenic |
| TCATTTGGAAAGTTGCAAAG+TGG | 0.618816 | 1.3:+53699878 | MS.gene71459:CDS |
| GTTACCAGTACAGGCAACAA+TGG | 0.619153 | 1.3:-53699681 | None:intergenic |
| TCTCTGAGCTACCAGGGCGT+GGG | 0.623157 | 1.3:+53701530 | MS.gene71459:CDS |
| AAATCTGAGTTGAGGCAGAG+AGG | 0.625519 | 1.3:-53698870 | None:intergenic |
| GTTACAAGACATTAAACAGT+GGG | 0.627387 | 1.3:+53699562 | MS.gene71459:CDS |
| GATGGGCTCTTCTAAGTAGA+GGG | 0.629283 | 1.3:+53703054 | MS.gene71459:CDS |
| TGGAGGCAACGACCCAAAGT+GGG | 0.636550 | 1.3:+53702800 | MS.gene71459:CDS |
| TCACCTCAGAGACTTCTCCT+GGG | 0.638066 | 1.3:+53699364 | MS.gene71459:CDS |
| TTCGCAGTGATCAACCCTCA+AGG | 0.640109 | 1.3:+53701598 | MS.gene71459:CDS |
| AGATACATATTCATCTATGG+AGG | 0.642307 | 1.3:+53702783 | MS.gene71459:CDS |
| AGGAAAATTATCTTTCAATG+GGG | 0.652359 | 1.3:+53701643 | MS.gene71459:CDS |
| TCCATCACACGTCCACAAGT+AGG | 0.659029 | 1.3:-53703281 | None:intergenic |
| CTTCCCAGGAGAAGTCTCTG+AGG | 0.675866 | 1.3:-53699367 | None:intergenic |
| AACTATTTGGATCATCACGA+TGG | 0.682485 | 1.3:-53703331 | None:intergenic |
| TACTTGTGGACGTGTGATGG+AGG | 0.687419 | 1.3:+53703283 | MS.gene71459:CDS |
| AACACTTCTCTGAGCTACCA+GGG | 0.697242 | 1.3:+53701524 | MS.gene71459:CDS |
| TGTTACAAGACATTAAACAG+TGG | 0.717621 | 1.3:+53699561 | MS.gene71459:CDS |
| TGACAGATGATAACGACCCG+CGG | 0.734185 | 1.3:+53699299 | MS.gene71459:intron |
| TGAACCTATGTATCAAACTG+TGG | 0.735680 | 1.3:+53703103 | MS.gene71459:CDS |
| GTGCACACCAGACAACAATG+TGG | 0.739193 | 1.3:+53699333 | MS.gene71459:CDS |
| GAACTTACGATATACCGACA+AGG | 0.746980 | 1.3:-53699703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATCAGATTATAAAAAA+AGG | + | chr1.3:53699823-53699842 | MS.gene71459:CDS | 10.0% |
| !!! | CTTTTTTTTTTAAAGAATTT+AGG | + | chr1.3:53701938-53701957 | MS.gene71459:intron | 10.0% |
| !! | AAAAAACTGAATTATGATAT+TGG | + | chr1.3:53701562-53701581 | MS.gene71459:CDS | 15.0% |
| !! | AGTAAAAATAACATAGTAAA+AGG | - | chr1.3:53700962-53700981 | None:intergenic | 15.0% |
| !! | AGTATATGAAGAAAAAAATT+GGG | - | chr1.3:53700751-53700770 | None:intergenic | 15.0% |
| !! | GTAAAAATAACATAGTAAAA+GGG | - | chr1.3:53700961-53700980 | None:intergenic | 15.0% |
| !! | TAGTATATGAAGAAAAAAAT+TGG | - | chr1.3:53700752-53700771 | None:intergenic | 15.0% |
| !! | TATTAAAATGTATAAGTGAA+AGG | - | chr1.3:53698931-53698950 | None:intergenic | 15.0% |
| !! | TTAGATTAACAAGAAATTTA+TGG | - | chr1.3:53701888-53701907 | None:intergenic | 15.0% |
| !! | TTTATTATAGCTTTCATAAT+TGG | - | chr1.3:53702164-53702183 | None:intergenic | 15.0% |
| !!! | TTTTATTAATCTGTATGAAA+TGG | + | chr1.3:53699217-53699236 | MS.gene71459:intron | 15.0% |
| !! | AAATTATCCTTATTAACAGA+TGG | - | chr1.3:53699161-53699180 | None:intergenic | 20.0% |
| !! | AACTTTAGATTTATGAAGTA+CGG | + | chr1.3:53701269-53701288 | MS.gene71459:intron | 20.0% |
| !! | AAGGAAAATTATCTTTCAAT+GGG | + | chr1.3:53701642-53701661 | MS.gene71459:CDS | 20.0% |
| !! | AATCTGAGTACAATTATATT+GGG | - | chr1.3:53700352-53700371 | None:intergenic | 20.0% |
| !! | AGTAAATTTCATTAACATGT+CGG | - | chr1.3:53700505-53700524 | None:intergenic | 20.0% |
| !! | CACATGAAAATTAATCTTAA+TGG | - | chr1.3:53700451-53700470 | None:intergenic | 20.0% |
| !! | GAAAATCATATCATTCAAAA+TGG | - | chr1.3:53700586-53700605 | None:intergenic | 20.0% |
| !! | GATATATTAACACTAAACAA+CGG | + | chr1.3:53702024-53702043 | MS.gene71459:intron | 20.0% |
| !! | TAATTGTTCTTTATGATTGA+AGG | - | chr1.3:53702604-53702623 | None:intergenic | 20.0% |
| !! | TACATAAATAACTACATATG+TGG | + | chr1.3:53699908-53699927 | MS.gene71459:intron | 20.0% |
| !! | TATATACATGTAAGTGTAAA+TGG | + | chr1.3:53699775-53699794 | MS.gene71459:intron | 20.0% |
| !! | TATTCTTACTTGGTATAAAA+AGG | + | chr1.3:53700824-53700843 | MS.gene71459:intron | 20.0% |
| !! | TCTTGTAAATGAATAAAACA+TGG | + | chr1.3:53700397-53700416 | MS.gene71459:intron | 20.0% |
| !! | TTTAGTGTAAATATATGTGT+CGG | + | chr1.3:53701360-53701379 | MS.gene71459:intron | 20.0% |
| !!! | ATATTGTTTCCAATTTTTGT+AGG | + | chr1.3:53699993-53700012 | MS.gene71459:intron | 20.0% |
| !!! | GTTGACATTCTTTTTATTTT+AGG | - | chr1.3:53700309-53700328 | None:intergenic | 20.0% |
| !!! | TAAATAATTTCCATGCATTT+TGG | + | chr1.3:53701454-53701473 | MS.gene71459:intron | 20.0% |
| !!! | TATTGTTTCCAATTTTTGTA+GGG | + | chr1.3:53699994-53700013 | MS.gene71459:intron | 20.0% |
| !!! | TTTAAATAAAAGGTATGTGT+TGG | + | chr1.3:53701501-53701520 | MS.gene71459:intron | 20.0% |
| !!! | TTTTTGTCTTGTCATTTTTT+TGG | - | chr1.3:53702447-53702466 | None:intergenic | 20.0% |
| ! | AAAAACTCCATCTGTTAATA+AGG | + | chr1.3:53699151-53699170 | MS.gene71459:intron | 25.0% |
| ! | AAAATAACATAGTAAAAGGG+CGG | - | chr1.3:53700958-53700977 | None:intergenic | 25.0% |
| ! | AAATGATCCACAATATTAGA+TGG | + | chr1.3:53702380-53702399 | MS.gene71459:intron | 25.0% |
| ! | ACATCAAACCATAAAAAATG+TGG | + | chr1.3:53702860-53702879 | MS.gene71459:CDS | 25.0% |
| ! | AGGAAAATTATCTTTCAATG+GGG | + | chr1.3:53701643-53701662 | MS.gene71459:CDS | 25.0% |
| ! | ATGTATATACGATATAGTGA+CGG | - | chr1.3:53699764-53699783 | None:intergenic | 25.0% |
| ! | CAAATACCACCAATATTTAT+AGG | + | chr1.3:53700113-53700132 | MS.gene71459:CDS | 25.0% |
| ! | CAAGGAAAATTATCTTTCAA+TGG | + | chr1.3:53701641-53701660 | MS.gene71459:CDS | 25.0% |
| ! | GAAAGTAGATATCAATATTG+AGG | + | chr1.3:53701744-53701763 | MS.gene71459:CDS | 25.0% |
| ! | GAATCTGAGTACAATTATAT+TGG | - | chr1.3:53700353-53700372 | None:intergenic | 25.0% |
| ! | GATAGATACATATTCATCTA+TGG | + | chr1.3:53702780-53702799 | MS.gene71459:CDS | 25.0% |
| ! | GTAAATTTCATTAACATGTC+GGG | - | chr1.3:53700504-53700523 | None:intergenic | 25.0% |
| ! | GTGCAATTATGTATCTTAAT+AGG | + | chr1.3:53699432-53699451 | MS.gene71459:CDS | 25.0% |
| ! | TAAATTTCATTAACATGTCG+GGG | - | chr1.3:53700503-53700522 | None:intergenic | 25.0% |
| ! | TACTAAATGATTACTATGCA+GGG | + | chr1.3:53700676-53700695 | MS.gene71459:intron | 25.0% |
| ! | TATCAAATTATTAACGGTGT+CGG | - | chr1.3:53701329-53701348 | None:intergenic | 25.0% |
| ! | TGAAAAGTGGAAAAATAATG+TGG | + | chr1.3:53703133-53703152 | MS.gene71459:CDS | 25.0% |
| ! | TGAAGATATCTTCAAGAAAT+GGG | + | chr1.3:53701699-53701718 | MS.gene71459:CDS | 25.0% |
| ! | TGGGATCACTATAAAAAAAA+TGG | - | chr1.3:53700333-53700352 | None:intergenic | 25.0% |
| ! | TGTATATTCCCTACAAAAAT+TGG | - | chr1.3:53700005-53700024 | None:intergenic | 25.0% |
| ! | TTAAAAATGTGTCTGTAGTT+TGG | - | chr1.3:53701775-53701794 | None:intergenic | 25.0% |
| ! | TTACTAAATGATTACTATGC+AGG | + | chr1.3:53700675-53700694 | MS.gene71459:intron | 25.0% |
| ! | TTATAATGAATGAGAATGCA+AGG | + | chr1.3:53701623-53701642 | MS.gene71459:CDS | 25.0% |
| ! | TTGTTTCATGTATTCTTACT+TGG | + | chr1.3:53700814-53700833 | MS.gene71459:intron | 25.0% |
| !! | AAAAGTATGGAATCTTTGTT+GGG | - | chr1.3:53702923-53702942 | None:intergenic | 25.0% |
| !! | ATGTATTCATGTGTTTTACA+AGG | - | chr1.3:53700652-53700671 | None:intergenic | 25.0% |
| !! | ATTTGAAAGAAAGCATGAAA+TGG | + | chr1.3:53701218-53701237 | MS.gene71459:CDS | 25.0% |
| !!! | AATGGTTCTTTTTTTCTTGT+AGG | + | chr1.3:53699793-53699812 | MS.gene71459:intron | 25.0% |
| !!! | ATGGTTCTTTTTTTCTTGTA+GGG | + | chr1.3:53699794-53699813 | MS.gene71459:intron | 25.0% |
| AAACCACAAGAAGTGATAAA+AGG | + | chr1.3:53701115-53701134 | MS.gene71459:CDS | 30.0% | |
| AATTGGGTAATAATCTAGTG+TGG | - | chr1.3:53700735-53700754 | None:intergenic | 30.0% | |
| ACGAAACAAATTTGTCTTAG+AGG | + | chr1.3:53702539-53702558 | MS.gene71459:intron | 30.0% | |
| ACTAAATGATTACTATGCAG+GGG | + | chr1.3:53700677-53700696 | MS.gene71459:intron | 30.0% | |
| AGATACATATTCATCTATGG+AGG | + | chr1.3:53702783-53702802 | MS.gene71459:CDS | 30.0% | |
| AGCATATCTAAAAAGCTATG+AGG | - | chr1.3:53701434-53701453 | None:intergenic | 30.0% | |
| ATATCTTCAAGAAATGGGAA+TGG | + | chr1.3:53701704-53701723 | MS.gene71459:CDS | 30.0% | |
| ATCAATATCGTCAAGCTTAA+AGG | - | chr1.3:53698767-53698786 | None:intergenic | 30.0% | |
| ATGATGTTACCTATGATTCA+GGG | + | chr1.3:53702747-53702766 | MS.gene71459:intron | 30.0% | |
| ATTCCTCATAATCTTTGACA+TGG | - | chr1.3:53698813-53698832 | None:intergenic | 30.0% | |
| ATTGTTAGTACCAAAATGCA+TGG | - | chr1.3:53701467-53701486 | None:intergenic | 30.0% | |
| CAAAATGGAAAACAGAAATC+TGG | - | chr1.3:53700571-53700590 | None:intergenic | 30.0% | |
| CAATAATAGTTAAGACACTC+AGG | - | chr1.3:53700169-53700188 | None:intergenic | 30.0% | |
| CATTCATTATAACACCTTGA+GGG | - | chr1.3:53701615-53701634 | None:intergenic | 30.0% | |
| CGAAACAAATTTGTCTTAGA+GGG | + | chr1.3:53702540-53702559 | MS.gene71459:intron | 30.0% | |
| CTGAAGATATCTTCAAGAAA+TGG | + | chr1.3:53701698-53701717 | MS.gene71459:CDS | 30.0% | |
| GATAAAAGGTTTCAAGAAAG+AGG | + | chr1.3:53701129-53701148 | MS.gene71459:CDS | 30.0% | |
| GGGTGATATAAACTTTGTTA+AGG | - | chr1.3:53698792-53698811 | None:intergenic | 30.0% | |
| GTACTCAGATTCTTTAAGTA+AGG | + | chr1.3:53700361-53700380 | MS.gene71459:intron | 30.0% | |
| GTGGATCATTTCTATCTATT+TGG | - | chr1.3:53702371-53702390 | None:intergenic | 30.0% | |
| GTTACAAGACATTAAACAGT+GGG | + | chr1.3:53699562-53699581 | MS.gene71459:CDS | 30.0% | |
| GTTTACTCCATCTAATATTG+TGG | - | chr1.3:53702390-53702409 | None:intergenic | 30.0% | |
| TATCTATTTGGTACTTCTTC+CGG | - | chr1.3:53702359-53702378 | None:intergenic | 30.0% | |
| TATGATGTTACCTATGATTC+AGG | + | chr1.3:53702746-53702765 | MS.gene71459:intron | 30.0% | |
| TCAATATCGTCAAGCTTAAA+GGG | - | chr1.3:53698766-53698785 | None:intergenic | 30.0% | |
| TCATTCATTATAACACCTTG+AGG | - | chr1.3:53701616-53701635 | None:intergenic | 30.0% | |
| TGATCTTGTCACATTCTTAT+TGG | + | chr1.3:53699535-53699554 | MS.gene71459:CDS | 30.0% | |
| TGGTTGTTGCCTATAAATAT+TGG | - | chr1.3:53700125-53700144 | None:intergenic | 30.0% | |
| TGTTACAAGACATTAAACAG+TGG | + | chr1.3:53699561-53699580 | MS.gene71459:CDS | 30.0% | |
| TTAAAGCACAAGAGCAAAAA+TGG | - | chr1.3:53700861-53700880 | None:intergenic | 30.0% | |
| TTCCTCATAATCTTTGACAT+GGG | - | chr1.3:53698812-53698831 | None:intergenic | 30.0% | |
| TTGTTGCCTATAAATATTGG+TGG | - | chr1.3:53700122-53700141 | None:intergenic | 30.0% | |
| ! | AAACCTTTTATCACTTCTTG+TGG | - | chr1.3:53701121-53701140 | None:intergenic | 30.0% |
| ! | AAAGATTCCATACTTTTGGA+TGG | + | chr1.3:53702926-53702945 | MS.gene71459:CDS | 30.0% |
| ! | AAGACAAATTTGTTTCGTAG+AGG | - | chr1.3:53702537-53702556 | None:intergenic | 30.0% |
| ! | AAGAGGATTTCAAGATTTTG+TGG | + | chr1.3:53701146-53701165 | MS.gene71459:CDS | 30.0% |
| ! | AAGATTCCATACTTTTGGAT+GGG | + | chr1.3:53702927-53702946 | MS.gene71459:CDS | 30.0% |
| ! | CAAAAGTATGGAATCTTTGT+TGG | - | chr1.3:53702924-53702943 | None:intergenic | 30.0% |
| ! | CAACAAAGATTCCATACTTT+TGG | + | chr1.3:53702922-53702941 | MS.gene71459:CDS | 30.0% |
| !! | TGAACTCTTGTTGTACTTTT+CGG | - | chr1.3:53702087-53702106 | None:intergenic | 30.0% |
| !!! | AATTTTTTTCTTCCCAACAC+AGG | + | chr1.3:53700985-53701004 | MS.gene71459:intron | 30.0% |
| !!! | ATTTTTTTCTTCCCAACACA+GGG | + | chr1.3:53700986-53701005 | MS.gene71459:intron | 30.0% |
| !!! | TTGGGTTTTTTTTTCCTAGT+TGG | - | chr1.3:53702905-53702924 | None:intergenic | 30.0% |
| AACTATTTGGATCATCACGA+TGG | - | chr1.3:53703334-53703353 | None:intergenic | 35.0% | |
| ACAAGATCAGTTATATCAGC+AGG | - | chr1.3:53699524-53699543 | None:intergenic | 35.0% | |
| ACTTTGCAACTTTCCAAATG+AGG | - | chr1.3:53699879-53699898 | None:intergenic | 35.0% | |
| ATGAAGTACGGATAGAAACA+CGG | + | chr1.3:53701281-53701300 | MS.gene71459:intron | 35.0% | |
| ATGTTAAACTTCTCTCCTTC+TGG | - | chr1.3:53702212-53702231 | None:intergenic | 35.0% | |
| ATTCAATCATCAGACACACT+TGG | + | chr1.3:53699455-53699474 | MS.gene71459:CDS | 35.0% | |
| ATTTCGAGATTAGACAGCAT+TGG | + | chr1.3:53701046-53701065 | MS.gene71459:CDS | 35.0% | |
| CAAGAATTCACAAGAGCAAT+TGG | + | chr1.3:53702825-53702844 | MS.gene71459:CDS | 35.0% | |
| CAATTGCTCTTGTGAATTCT+TGG | - | chr1.3:53702827-53702846 | None:intergenic | 35.0% | |
| GAAAGTTGCAAAGTGGAAAT+TGG | + | chr1.3:53699885-53699904 | MS.gene71459:CDS | 35.0% | |
| GAACCTTTCTGAATTGAACT+TGG | - | chr1.3:53699502-53699521 | None:intergenic | 35.0% | |
| GAATAAAACATGGTTGTGAG+TGG | + | chr1.3:53700407-53700426 | MS.gene71459:intron | 35.0% | |
| GATAGACGAAAGAAACAAGA+TGG | - | chr1.3:53699194-53699213 | None:intergenic | 35.0% | |
| GATTCCCATTGTGGATAATT+GGG | + | chr1.3:53701168-53701187 | MS.gene71459:CDS | 35.0% | |
| TAAAAAAAGGCTGTCTCATG+TGG | + | chr1.3:53699836-53699855 | MS.gene71459:CDS | 35.0% | |
| TAGCCAAGTTCAATTCAGAA+AGG | + | chr1.3:53699496-53699515 | MS.gene71459:CDS | 35.0% | |
| TATGATTCAGGGCATGAAAT+GGG | + | chr1.3:53702758-53702777 | MS.gene71459:intron | 35.0% | |
| TATGGAAGGAAAGAAATGAC+AGG | - | chr1.3:53702278-53702297 | None:intergenic | 35.0% | |
| TATGGTAGTTGGTTAGGAAT+TGG | - | chr1.3:53702419-53702438 | None:intergenic | 35.0% | |
| TCAGCATCACTTATCCTAAA+AGG | - | chr1.3:53701682-53701701 | None:intergenic | 35.0% | |
| TCATCCCAATTATCCACAAT+GGG | - | chr1.3:53701175-53701194 | None:intergenic | 35.0% | |
| TCATTTGGAAAGTTGCAAAG+TGG | + | chr1.3:53699878-53699897 | MS.gene71459:CDS | 35.0% | |
| TCCAAAGATGTACCAATCAA+TGG | + | chr1.3:53698685-53698704 | MS.gene71459:CDS | 35.0% | |
| TCTATACCCATCCAAAAGTA+TGG | - | chr1.3:53702936-53702955 | None:intergenic | 35.0% | |
| TGAACCTATGTATCAAACTG+TGG | + | chr1.3:53703103-53703122 | MS.gene71459:CDS | 35.0% | |
| TTCATCCCAATTATCCACAA+TGG | - | chr1.3:53701176-53701195 | None:intergenic | 35.0% | |
| TTCTTGAGACTTCTGATCAA+AGG | + | chr1.3:53700077-53700096 | MS.gene71459:CDS | 35.0% | |
| TTTAGTCACACCAATATCGA+TGG | + | chr1.3:53700925-53700944 | MS.gene71459:intron | 35.0% | |
| TTTGCTTGTTCGTAGTGTTA+TGG | - | chr1.3:53702296-53702315 | None:intergenic | 35.0% | |
| ! | GAATCGATGCTTTTCCTTTT+AGG | + | chr1.3:53701665-53701684 | MS.gene71459:CDS | 35.0% |
| ! | TACTTTTCGGTTGTCTTAGA+TGG | - | chr1.3:53702074-53702093 | None:intergenic | 35.0% |
| ! | TACTTTTGGATGGGTATAGA+TGG | + | chr1.3:53702936-53702955 | MS.gene71459:CDS | 35.0% |
| ! | TCAAGAAATGGGAATGGTTT+TGG | + | chr1.3:53701710-53701729 | MS.gene71459:CDS | 35.0% |
| ! | TCATTGGATTAGACGTGTTT+CGG | - | chr1.3:53701402-53701421 | None:intergenic | 35.0% |
| !! | AAGCTTTGATGAAGCTTTTC+AGG | + | chr1.3:53703166-53703185 | MS.gene71459:CDS | 35.0% |
| !! | CATGTTACACTTTTTGGTCA+TGG | + | chr1.3:53703080-53703099 | MS.gene71459:CDS | 35.0% |
| !! | TAGAGGCATTATTACTTCTG+AGG | - | chr1.3:53702520-53702539 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTTCCTAGTTGG+TGG | - | chr1.3:53702902-53702921 | None:intergenic | 35.0% |
| !!! | GTCAACGTCCACATTTTTTA+TGG | - | chr1.3:53702871-53702890 | None:intergenic | 35.0% |
| !!! | GTCATTTTTTTGGCCAGTTA+TGG | - | chr1.3:53702437-53702456 | None:intergenic | 35.0% |
| AAAAAGACCCCAAGCAAACA+CGG | + | chr1.3:53702575-53702594 | MS.gene71459:intron | 40.0% | |
| AAAACCCCATTCTTATGTGC+GGG | - | chr1.3:53702137-53702156 | None:intergenic | 40.0% | |
| AAATTCTCCGACTCAGATAC+TGG | - | chr1.3:53702238-53702257 | None:intergenic | 40.0% | |
| AACTCTAGCTGCATTCTCTT+TGG | + | chr1.3:53699403-53699422 | MS.gene71459:CDS | 40.0% | |
| AAGACTTCAATACCCTGTGT+TGG | - | chr1.3:53701001-53701020 | None:intergenic | 40.0% | |
| AATACCCGCACATAAGAATG+GGG | + | chr1.3:53702130-53702149 | MS.gene71459:intron | 40.0% | |
| ACATTCTCCAGTATCTGAGT+CGG | + | chr1.3:53702228-53702247 | MS.gene71459:intron | 40.0% | |
| ACTGTCCAATACACAACAAG+AGG | - | chr1.3:53699656-53699675 | None:intergenic | 40.0% | |
| ACTTGTCCAAATCCTACTTG+TGG | + | chr1.3:53703269-53703288 | MS.gene71459:CDS | 40.0% | |
| AGACTTCAATACCCTGTGTT+GGG | - | chr1.3:53701000-53701019 | None:intergenic | 40.0% | |
| AGACTTCTGATCAAAGGCAA+TGG | + | chr1.3:53700083-53700102 | MS.gene71459:CDS | 40.0% | |
| AGGCAACAACCAAGTTAAAC+AGG | + | chr1.3:53700133-53700152 | MS.gene71459:CDS | 40.0% | |
| AGTTCCAGAAATCTGAGTTG+AGG | - | chr1.3:53698881-53698900 | None:intergenic | 40.0% | |
| CAAAACCCCATTCTTATGTG+CGG | - | chr1.3:53702138-53702157 | None:intergenic | 40.0% | |
| CAAGTTAAACAGGTTAGTGC+TGG | + | chr1.3:53700143-53700162 | MS.gene71459:intron | 40.0% | |
| CAATACCCGCACATAAGAAT+GGG | + | chr1.3:53702129-53702148 | MS.gene71459:intron | 40.0% | |
| CACCCATGTCAAAGATTATG+AGG | + | chr1.3:53698807-53698826 | MS.gene71459:CDS | 40.0% | |
| CAGCACTAACCTGTTTAACT+TGG | - | chr1.3:53700145-53700164 | None:intergenic | 40.0% | |
| CATTTCATGCCCTGAATCAT+AGG | - | chr1.3:53702759-53702778 | None:intergenic | 40.0% | |
| CGTCAAGCTTAAAGGGATTA+GGG | - | chr1.3:53698759-53698778 | None:intergenic | 40.0% | |
| CTATGATTCAGGGCATGAAA+TGG | + | chr1.3:53702757-53702776 | MS.gene71459:intron | 40.0% | |
| CTTGTTCGTAGTGTTATGGA+AGG | - | chr1.3:53702292-53702311 | None:intergenic | 40.0% | |
| GAACTTACGATATACCGACA+AGG | - | chr1.3:53699706-53699725 | None:intergenic | 40.0% | |
| GAGCTGAGATTTCTGTTCTT+GGG | - | chr1.3:53698737-53698756 | None:intergenic | 40.0% | |
| GCACAAGAGCAAAAATGGTT+TGG | - | chr1.3:53700856-53700875 | None:intergenic | 40.0% | |
| GGATTCCCATTGTGGATAAT+TGG | + | chr1.3:53701167-53701186 | MS.gene71459:CDS | 40.0% | |
| GTTCGCTTATGCATCAGATT+TGG | - | chr1.3:53702319-53702338 | None:intergenic | 40.0% | |
| GTTGGAGACAAGCTTGAAAA+GGG | - | chr1.3:53698848-53698867 | None:intergenic | 40.0% | |
| TACATCTTTGGACAATGCAG+TGG | - | chr1.3:53698677-53698696 | None:intergenic | 40.0% | |
| TAGTTGGTTAGGAATTGGCT+TGG | - | chr1.3:53702414-53702433 | None:intergenic | 40.0% | |
| TATGAGGCACAAACACTCAT+TGG | - | chr1.3:53701418-53701437 | None:intergenic | 40.0% | |
| TCAGCCACAGTTTGATACAT+AGG | - | chr1.3:53703110-53703129 | None:intergenic | 40.0% | |
| TCCTAACCAACTACCATAAC+TGG | + | chr1.3:53702421-53702440 | MS.gene71459:intron | 40.0% | |
| TCGTCAAGCTTAAAGGGATT+AGG | - | chr1.3:53698760-53698779 | None:intergenic | 40.0% | |
| TGAATTCTTGGACCCACTTT+GGG | - | chr1.3:53702815-53702834 | None:intergenic | 40.0% | |
| TGTTGGAGACAAGCTTGAAA+AGG | - | chr1.3:53698849-53698868 | None:intergenic | 40.0% | |
| TTAAACTTCTCTCCTTCTGG+TGG | - | chr1.3:53702209-53702228 | None:intergenic | 40.0% | |
| ! | ACATCGAGATTTTCCATAGC+CGG | + | chr1.3:53702337-53702356 | MS.gene71459:intron | 40.0% |
| ! | GACATTGATTACCACCAACT+AGG | + | chr1.3:53702888-53702907 | MS.gene71459:CDS | 40.0% |
| ! | GATTTTGTGGATTCCCATTG+TGG | + | chr1.3:53701159-53701178 | MS.gene71459:CDS | 40.0% |
| ! | GCCATTGATTGGTACATCTT+TGG | - | chr1.3:53698689-53698708 | None:intergenic | 40.0% |
| ! | GGATTCCTCTTGTTGTGTAT+TGG | + | chr1.3:53699648-53699667 | MS.gene71459:CDS | 40.0% |
| ! | GGGCATCATGTTACACTTTT+TGG | + | chr1.3:53703074-53703093 | MS.gene71459:CDS | 40.0% |
| ! | GTCAGGTTAGTTGTCAATGT+CGG | + | chr1.3:53699081-53699100 | MS.gene71459:intron | 40.0% |
| ! | TATCAATGCTTTTGCTTCCC+AGG | - | chr1.3:53699384-53699403 | None:intergenic | 40.0% |
| ! | TGTTTGCTTGGGGTCTTTTT+GGG | - | chr1.3:53702575-53702594 | None:intergenic | 40.0% |
| ! | TTTTGGCCAGTTATGGTAGT+TGG | - | chr1.3:53702430-53702449 | None:intergenic | 40.0% |
| !! | CACTAAACAACGGACTATCT+AGG | + | chr1.3:53702034-53702053 | MS.gene71459:intron | 40.0% |
| !! | CTGTGGCTGATTTTGAAAAG+TGG | + | chr1.3:53703120-53703139 | MS.gene71459:CDS | 40.0% |
| !! | TAAACAACGGACTATCTAGG+CGG | + | chr1.3:53702037-53702056 | MS.gene71459:intron | 40.0% |
| !! | TGTAGCTTTAAACCACCAGA+AGG | + | chr1.3:53702194-53702213 | MS.gene71459:intron | 40.0% |
| !!! | TTGGGAGGTACCATTCTTTT+GGG | - | chr1.3:53698719-53698738 | None:intergenic | 40.0% |
| AAAAAGGCTGTCTCATGTGG+TGG | + | chr1.3:53699839-53699858 | MS.gene71459:CDS | 45.0% | |
| AACACTTCTCTGAGCTACCA+GGG | + | chr1.3:53701524-53701543 | MS.gene71459:CDS | 45.0% | |
| AAGGTTTCCGTGTTTGCTTG+GGG | - | chr1.3:53702585-53702604 | None:intergenic | 45.0% | |
| ACACGTCCACAAGTAGGATT+TGG | - | chr1.3:53703278-53703297 | None:intergenic | 45.0% | |
| ACATTAAACAGTGGGCAGCA+TGG | + | chr1.3:53699570-53699589 | MS.gene71459:CDS | 45.0% | |
| ATCCAGCATAAGGCATAGTG+TGG | + | chr1.3:53700703-53700722 | MS.gene71459:intron | 45.0% | |
| ATGTGGTGGTTAACGAGTTG+AGG | + | chr1.3:53699853-53699872 | MS.gene71459:CDS | 45.0% | |
| CAAACAAGACCCATCAGGAT+GGG | + | chr1.3:53703037-53703056 | MS.gene71459:CDS | 45.0% | |
| CACACCAATATCGATGGTCT+AGG | + | chr1.3:53700931-53700950 | MS.gene71459:intron | 45.0% | |
| CCAATACCCGCACATAAGAA+TGG | + | chr1.3:53702128-53702147 | MS.gene71459:intron | 45.0% | |
| CCATTCTTATGTGCGGGTAT+TGG | - | chr1.3:53702131-53702150 | None:intergenic | 45.0% | |
| CCTGAAGAGGATTTCTTGTC+AGG | + | chr1.3:53699064-53699083 | MS.gene71459:CDS | 45.0% | |
| CCTGACAAGAAATCCTCTTC+AGG | - | chr1.3:53699067-53699086 | None:intergenic | 45.0% | |
| CTGAGATTTCTGTTCTTGGG+AGG | - | chr1.3:53698734-53698753 | None:intergenic | 45.0% | |
| CTTTGCCTGATGCTATGCAA+TGG | + | chr1.3:53699627-53699646 | MS.gene71459:CDS | 45.0% | |
| GAAGGTTTCCGTGTTTGCTT+GGG | - | chr1.3:53702586-53702605 | None:intergenic | 45.0% | |
| GCCAGTTATGGTAGTTGGTT+AGG | - | chr1.3:53702425-53702444 | None:intergenic | 45.0% | |
| GGAATCCATTGCATAGCATC+AGG | - | chr1.3:53699635-53699654 | None:intergenic | 45.0% | |
| GGAGAATCCACATTGTTGTC+TGG | - | chr1.3:53699343-53699362 | None:intergenic | 45.0% | |
| GGAGCTGAGATTTCTGTTCT+TGG | - | chr1.3:53698738-53698757 | None:intergenic | 45.0% | |
| GTCTGCTTTCGGTTATGACT+TGG | + | chr1.3:53699592-53699611 | MS.gene71459:CDS | 45.0% | |
| GTGAATTCTTGGACCCACTT+TGG | - | chr1.3:53702816-53702835 | None:intergenic | 45.0% | |
| GTTACCAGTACAGGCAACAA+TGG | - | chr1.3:53699684-53699703 | None:intergenic | 45.0% | |
| TCAAACAAGACCCATCAGGA+TGG | + | chr1.3:53703036-53703055 | MS.gene71459:CDS | 45.0% | |
| TCTGCCTCAACTCAGATTTC+TGG | + | chr1.3:53698874-53698893 | MS.gene71459:CDS | 45.0% | |
| TGAAGGTTTCCGTGTTTGCT+TGG | - | chr1.3:53702587-53702606 | None:intergenic | 45.0% | |
| TGTCTCAAACAAGACCCATC+AGG | + | chr1.3:53703032-53703051 | MS.gene71459:CDS | 45.0% | |
| TTAGAAGAGCCCATCCTGAT+GGG | - | chr1.3:53703049-53703068 | None:intergenic | 45.0% | |
| TTCTTTATTATCCCACGCCC+TGG | - | chr1.3:53701544-53701563 | None:intergenic | 45.0% | |
| TTTGGTACTTCTTCCGGCTA+TGG | - | chr1.3:53702353-53702372 | None:intergenic | 45.0% | |
| ! | AAATCTGAGTTGAGGCAGAG+AGG | - | chr1.3:53698873-53698892 | None:intergenic | 45.0% |
| ! | GATGGGCTCTTCTAAGTAGA+GGG | + | chr1.3:53703054-53703073 | MS.gene71459:CDS | 45.0% |
| ! | GGGTTGATCACTGCGAAAAT+AGG | - | chr1.3:53701595-53701614 | None:intergenic | 45.0% |
| ! | GTGTTTGCTTGGGGTCTTTT+TGG | - | chr1.3:53702576-53702595 | None:intergenic | 45.0% |
| ! | TAACGAGTTGAGGCCTCATT+TGG | + | chr1.3:53699863-53699882 | MS.gene71459:CDS | 45.0% |
| !! | GCTGCATTCTCTTTGGAGTA+TGG | + | chr1.3:53699410-53699429 | MS.gene71459:CDS | 45.0% |
| !! | TATATGTGTCGGTGTCGTGT+CGG | + | chr1.3:53701371-53701390 | MS.gene71459:intron | 45.0% |
| !!! | CTTGGGAGGTACCATTCTTT+TGG | - | chr1.3:53698720-53698739 | None:intergenic | 45.0% |
| !!! | TAATTTTATCAAATTATTAA+CGG | - | chr1.3:53701335-53701354 | None:intergenic | 5.0% |
| !!! | TTATTTTTGTTTTAAATAAA+AGG | + | chr1.3:53701491-53701510 | MS.gene71459:intron | 5.0% |
| !!! | TTTTTTTTTTAAAGAATTTA+GGG | + | chr1.3:53701939-53701958 | MS.gene71459:intron | 5.0% |
| ACCGACAAGGTTACCAGTAC+AGG | - | chr1.3:53699693-53699712 | None:intergenic | 50.0% | |
| AGCCACACTATGCCTTATGC+TGG | - | chr1.3:53700708-53700727 | None:intergenic | 50.0% | |
| AGTTGAGGCAGAGAGGATGT+TGG | - | chr1.3:53698866-53698885 | None:intergenic | 50.0% | |
| ATCACCTCAGAGACTTCTCC+TGG | + | chr1.3:53699363-53699382 | MS.gene71459:CDS | 50.0% | |
| CAGACTTCTCTGTCCTGAAG+AGG | + | chr1.3:53699051-53699070 | MS.gene71459:CDS | 50.0% | |
| CGGACCTAGACCATCGATAT+TGG | - | chr1.3:53700938-53700957 | None:intergenic | 50.0% | |
| CTCTTCAGGACAGAGAAGTC+TGG | - | chr1.3:53699053-53699072 | None:intergenic | 50.0% | |
| CTTAGAAGAGCCCATCCTGA+TGG | - | chr1.3:53703050-53703069 | None:intergenic | 50.0% | |
| GAACACTTCTCTGAGCTACC+AGG | + | chr1.3:53701523-53701542 | MS.gene71459:CDS | 50.0% | |
| GCTACCATTGTTGCCTGTAC+TGG | + | chr1.3:53699677-53699696 | MS.gene71459:CDS | 50.0% | |
| GGCACTACGACCCAAAAGAA+TGG | + | chr1.3:53698706-53698725 | MS.gene71459:CDS | 50.0% | |
| GTGCACACCAGACAACAATG+TGG | + | chr1.3:53699333-53699352 | MS.gene71459:CDS | 50.0% | |
| TACTTGTGGACGTGTGATGG+AGG | + | chr1.3:53703283-53703302 | MS.gene71459:CDS | 50.0% | |
| TCACCTCAGAGACTTCTCCT+GGG | + | chr1.3:53699364-53699383 | MS.gene71459:CDS | 50.0% | |
| TCCATCACACGTCCACAAGT+AGG | - | chr1.3:53703284-53703303 | None:intergenic | 50.0% | |
| TCCTACTTGTGGACGTGTGA+TGG | + | chr1.3:53703280-53703299 | MS.gene71459:CDS | 50.0% | |
| TTCGCAGTGATCAACCCTCA+AGG | + | chr1.3:53701598-53701617 | MS.gene71459:CDS | 50.0% | |
| ! | GCCTGTACTGGTAACCTTGT+CGG | + | chr1.3:53699689-53699708 | MS.gene71459:CDS | 50.0% |
| ! | GGATGGGCTCTTCTAAGTAG+AGG | + | chr1.3:53703053-53703072 | MS.gene71459:CDS | 50.0% |
| ! | TGACAGATGATAACGACCCG+CGG | + | chr1.3:53699299-53699318 | MS.gene71459:intron | 50.0% |
| ! | TGGGTCGTAGTGCCATTGAT+TGG | - | chr1.3:53698700-53698719 | None:intergenic | 50.0% |
| !! | AGCTGTGTGTTTCTGGCTGT+GGG | - | chr1.3:53702494-53702513 | None:intergenic | 50.0% |
| !! | AGGAGAAGTCTCTGAGGTGA+TGG | - | chr1.3:53699364-53699383 | None:intergenic | 50.0% |
| ATGGAGGCAACGACCCAAAG+TGG | + | chr1.3:53702799-53702818 | MS.gene71459:CDS | 55.0% | |
| CTTCCCAGGAGAAGTCTCTG+AGG | - | chr1.3:53699370-53699389 | None:intergenic | 55.0% | |
| GAGGCTCAGCTGTGTGTTTC+TGG | - | chr1.3:53702501-53702520 | None:intergenic | 55.0% | |
| TGGAGGCAACGACCCAAAGT+GGG | + | chr1.3:53702800-53702819 | MS.gene71459:CDS | 55.0% | |
| TGGGCAGCATGGTCTGCTTT+CGG | + | chr1.3:53699581-53699600 | MS.gene71459:CDS | 55.0% | |
| !! | CAGCTGTGTGTTTCTGGCTG+TGG | - | chr1.3:53702495-53702514 | None:intergenic | 55.0% |
| !! | TGTTTCTGGCTGTGGGCAAC+AGG | - | chr1.3:53702487-53702506 | None:intergenic | 55.0% |
| GTGCACATTCTGCTGTGCCG+CGG | - | chr1.3:53699319-53699338 | None:intergenic | 60.0% | |
| TCTCTGAGCTACCAGGGCGT+GGG | + | chr1.3:53701530-53701549 | MS.gene71459:CDS | 60.0% | |
| TGCACATTCTGCTGTGCCGC+GGG | - | chr1.3:53699318-53699337 | None:intergenic | 60.0% | |
| TTCTCTGAGCTACCAGGGCG+TGG | + | chr1.3:53701529-53701548 | MS.gene71459:CDS | 60.0% | |
| !! | GCAGGGGAGCATCCAGCATA+AGG | + | chr1.3:53700693-53700712 | MS.gene71459:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53698670 | 53703364 | 53698670 | ID=MS.gene71459 |
| chr1.3 | mRNA | 53698670 | 53703364 | 53698670 | ID=MS.gene71459.t1;Parent=MS.gene71459 |
| chr1.3 | exon | 53698670 | 53698915 | 53698670 | ID=MS.gene71459.t1.exon1;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53698670 | 53698915 | 53698670 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53699032 | 53699085 | 53699032 | ID=MS.gene71459.t1.exon2;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53699032 | 53699085 | 53699032 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53699305 | 53699717 | 53699305 | ID=MS.gene71459.t1.exon3;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53699305 | 53699717 | 53699305 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53699815 | 53699906 | 53699815 | ID=MS.gene71459.t1.exon4;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53699815 | 53699906 | 53699815 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53700015 | 53700154 | 53700015 | ID=MS.gene71459.t1.exon5;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53700015 | 53700154 | 53700015 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53701007 | 53701239 | 53701007 | ID=MS.gene71459.t1.exon6;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53701007 | 53701239 | 53701007 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53701513 | 53701765 | 53701513 | ID=MS.gene71459.t1.exon7;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53701513 | 53701765 | 53701513 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| chr1.3 | exon | 53702768 | 53703364 | 53702768 | ID=MS.gene71459.t1.exon8;Parent=MS.gene71459.t1 |
| chr1.3 | CDS | 53702768 | 53703364 | 53702768 | ID=cds.MS.gene71459.t1;Parent=MS.gene71459.t1 |
| Gene Sequence |
| Protein sequence |
