Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72685.t1 | XP_024639264.1 | 96.1 | 306 | 12 | 0 | 1 | 306 | 1 | 306 | 2.90E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72685.t1 | Q7DNC3 | 65.1 | 298 | 103 | 1 | 1 | 297 | 1 | 298 | 4.1e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72685.t1 | A0A396HM95 | 96.1 | 306 | 12 | 0 | 1 | 306 | 1 | 306 | 2.1e-165 | 591.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene72685 | 0.832953 | 7.04E-56 | -1.69E-46 |
| MS.gene049151 | MS.gene72685 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene72685 | 0.832912 | 7.21E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene72685 | 0.83199 | 1.22E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene72685 | 0.823204 | 1.57E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene72685 | 0.817965 | 2.51E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene72685 | 0.809638 | 1.71E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene72685 | -0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene72685 | 0.818519 | 1.88E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene72685 | 0.853175 | 2.84E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene72685 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene72685 | 0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene72685 | 0.816184 | 6.30E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene72685 | 0.806589 | 7.64E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene72685 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene72685 | 0.804888 | 1.74E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene72685 | 0.811573 | 6.54E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene72685 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene72685 | 0.828749 | 7.56E-55 | -1.69E-46 |
| MS.gene059609 | MS.gene72685 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene72685 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene061114 | MS.gene72685 | -0.801731 | 7.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018097 | MS.gene72685 | PPI |
| MS.gene72685 | MS.gene033697 | PPI |
| MS.gene40408 | MS.gene72685 | PPI |
| MS.gene048614 | MS.gene72685 | PPI |
| MS.gene72685 | MS.gene54957 | PPI |
| MS.gene72685 | MS.gene024264 | PPI |
| MS.gene065375 | MS.gene72685 | PPI |
| MS.gene72685 | MS.gene50480 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72685.t1 | MTR_5g024770 | 91.753 | 291 | 6 | 1 | 1 | 291 | 1 | 273 | 0.0 | 536 |
| MS.gene72685.t1 | MTR_4g094578 | 60.544 | 294 | 110 | 2 | 16 | 303 | 24 | 317 | 6.33e-130 | 374 |
| MS.gene72685.t1 | MTR_8g099910 | 48.958 | 288 | 143 | 1 | 12 | 295 | 64 | 351 | 2.34e-99 | 298 |
| MS.gene72685.t1 | MTR_7g083790 | 48.464 | 293 | 147 | 1 | 7 | 295 | 68 | 360 | 1.38e-98 | 296 |
| MS.gene72685.t1 | MTR_6g033280 | 47.552 | 286 | 146 | 1 | 16 | 297 | 58 | 343 | 4.13e-95 | 286 |
| MS.gene72685.t1 | MTR_5g073040 | 27.143 | 280 | 181 | 5 | 22 | 286 | 40 | 311 | 1.65e-19 | 88.2 |
| MS.gene72685.t1 | MTR_4g057850 | 25.163 | 306 | 193 | 11 | 3 | 285 | 7 | 299 | 1.61e-15 | 76.6 |
| MS.gene72685.t1 | MTR_5g009500 | 24.629 | 337 | 202 | 11 | 1 | 294 | 16 | 343 | 6.95e-14 | 72.0 |
| MS.gene72685.t1 | MTR_7g064980 | 26.437 | 174 | 120 | 2 | 22 | 187 | 135 | 308 | 3.73e-13 | 69.7 |
| MS.gene72685.t1 | MTR_8g027975 | 24.629 | 337 | 200 | 10 | 3 | 294 | 31 | 358 | 5.52e-13 | 69.7 |
| MS.gene72685.t1 | MTR_8g096050 | 25.714 | 175 | 120 | 4 | 23 | 188 | 324 | 497 | 1.52e-12 | 68.6 |
| MS.gene72685.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 34 | 207 | 1.75e-12 | 66.2 |
| MS.gene72685.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 55 | 228 | 3.43e-12 | 65.9 |
| MS.gene72685.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 133 | 306 | 4.14e-12 | 66.6 |
| MS.gene72685.t1 | MTR_5g055410 | 27.807 | 187 | 117 | 5 | 34 | 204 | 132 | 316 | 5.01e-12 | 66.6 |
| MS.gene72685.t1 | MTR_7g066690 | 25.131 | 191 | 130 | 3 | 12 | 195 | 117 | 301 | 1.17e-11 | 65.1 |
| MS.gene72685.t1 | MTR_3g098460 | 23.729 | 177 | 122 | 4 | 22 | 187 | 300 | 474 | 1.23e-11 | 65.9 |
| MS.gene72685.t1 | MTR_4g018750 | 29.348 | 184 | 104 | 5 | 27 | 188 | 21 | 200 | 1.67e-11 | 64.3 |
| MS.gene72685.t1 | MTR_8g076760 | 28.877 | 187 | 101 | 9 | 33 | 193 | 125 | 305 | 2.00e-11 | 64.3 |
| MS.gene72685.t1 | MTR_4g018750 | 29.189 | 185 | 105 | 5 | 26 | 188 | 20 | 200 | 2.51e-11 | 63.9 |
| MS.gene72685.t1 | MTR_3g462140 | 26.708 | 161 | 110 | 2 | 36 | 189 | 135 | 294 | 3.56e-11 | 63.5 |
| MS.gene72685.t1 | MTR_1g087840 | 27.746 | 173 | 112 | 4 | 33 | 193 | 132 | 303 | 4.04e-11 | 63.5 |
| MS.gene72685.t1 | MTR_7g084400 | 24.561 | 171 | 123 | 3 | 22 | 187 | 310 | 479 | 4.28e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72685.t1 | AT2G17270 | 65.101 | 298 | 103 | 1 | 1 | 297 | 1 | 298 | 3.44e-150 | 425 |
| MS.gene72685.t1 | AT3G48850 | 48.084 | 287 | 145 | 1 | 13 | 295 | 63 | 349 | 1.84e-101 | 303 |
| MS.gene72685.t1 | AT5G14040 | 49.827 | 289 | 141 | 1 | 13 | 297 | 74 | 362 | 7.89e-101 | 302 |
| MS.gene72685.t1 | AT1G07030 | 26.786 | 280 | 183 | 6 | 22 | 286 | 41 | 313 | 1.10e-18 | 85.9 |
| MS.gene72685.t1 | AT5G01340 | 27.368 | 285 | 177 | 9 | 21 | 285 | 21 | 295 | 4.09e-18 | 84.0 |
| MS.gene72685.t1 | AT2G30160 | 26.578 | 301 | 185 | 8 | 9 | 286 | 31 | 318 | 1.39e-17 | 82.8 |
| MS.gene72685.t1 | AT3G53940 | 28.161 | 174 | 117 | 2 | 22 | 187 | 181 | 354 | 1.86e-15 | 77.0 |
| MS.gene72685.t1 | AT2G37890 | 27.586 | 174 | 118 | 2 | 22 | 187 | 153 | 326 | 2.74e-14 | 73.2 |
| MS.gene72685.t1 | AT3G20240 | 24.742 | 291 | 186 | 9 | 22 | 286 | 53 | 336 | 2.85e-12 | 67.4 |
| MS.gene72685.t1 | AT3G54110 | 22.905 | 179 | 131 | 1 | 22 | 193 | 119 | 297 | 5.13e-12 | 66.2 |
| MS.gene72685.t1 | AT4G01100 | 26.887 | 212 | 121 | 6 | 11 | 193 | 88 | 294 | 6.16e-12 | 65.9 |
| MS.gene72685.t1 | AT5G66380 | 28.108 | 185 | 103 | 7 | 33 | 193 | 122 | 300 | 7.14e-12 | 65.9 |
| MS.gene72685.t1 | AT4G01100 | 26.887 | 212 | 121 | 6 | 11 | 193 | 138 | 344 | 9.44e-12 | 65.9 |
| MS.gene72685.t1 | AT4G01100 | 26.887 | 212 | 121 | 6 | 11 | 193 | 152 | 358 | 1.82e-11 | 65.1 |
| MS.gene72685.t1 | AT4G03115 | 25.877 | 228 | 150 | 6 | 16 | 239 | 37 | 249 | 3.63e-11 | 63.9 |
| MS.gene72685.t1 | AT5G58970 | 25.830 | 271 | 162 | 9 | 22 | 265 | 17 | 275 | 4.52e-11 | 63.5 |
| MS.gene72685.t1 | AT4G03115 | 25.877 | 228 | 150 | 6 | 16 | 239 | 69 | 281 | 4.96e-11 | 63.5 |
| MS.gene72685.t1 | AT3G21390 | 25.359 | 209 | 126 | 5 | 19 | 198 | 128 | 335 | 5.30e-11 | 63.5 |
| MS.gene72685.t1 | AT3G21390 | 25.481 | 208 | 125 | 5 | 19 | 197 | 150 | 356 | 5.56e-11 | 63.5 |
| MS.gene72685.t1 | AT5G48970 | 25.743 | 202 | 123 | 5 | 19 | 193 | 133 | 334 | 9.64e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACTGTAATATTTAAT+TGG | 0.125547 | 5.4:-15978261 | None:intergenic |
| CCGTGGACTTGTTCCACTTT+TGG | 0.215295 | 5.4:+15978711 | MS.gene72685:CDS |
| AAGACTCCTGGTAAATAAAT+TGG | 0.271424 | 5.4:-15979895 | None:intergenic |
| AAATGGACATAGAGCTAAAT+TGG | 0.273532 | 5.4:-15978487 | None:intergenic |
| GGATGGACAGGCAAGTTCTT+TGG | 0.324400 | 5.4:+15978336 | MS.gene72685:CDS |
| GCTCAAGGAGGGTGCAGATT+TGG | 0.325080 | 5.4:+15978366 | MS.gene72685:CDS |
| CCAACCAGCAACATTCTAAT+AGG | 0.348096 | 5.4:-15979918 | None:intergenic |
| TAGCAACCAGGTTGCAGAAC+TGG | 0.354231 | 5.4:+15980606 | MS.gene72685:CDS |
| TCTTCCTATTAGAATGTTGC+TGG | 0.355082 | 5.4:+15979914 | MS.gene72685:CDS |
| CACGGAGAGATGCCCGTGTT+AGG | 0.358250 | 5.4:+15980551 | MS.gene72685:CDS |
| CCTTCTGCTGCATATACCTT+TGG | 0.377619 | 5.4:-15978573 | None:intergenic |
| TTGAGAGAGAGAGGTGGGGA+AGG | 0.390102 | 5.4:+15980521 | MS.gene72685:CDS |
| TATTATGCCCTTTGCACCAT+TGG | 0.395910 | 5.4:+15977289 | MS.gene72685:CDS |
| AAATACTGTAATATTTAATT+GGG | 0.407520 | 5.4:-15978260 | None:intergenic |
| AACCATTGCAAAGTTATAGA+AGG | 0.409895 | 5.4:-15979942 | None:intergenic |
| TAGAGTTGAGAGAGAGAGGT+GGG | 0.413946 | 5.4:+15980516 | MS.gene72685:CDS |
| CATTTGAAGCTGTTAAAGTC+AGG | 0.432003 | 5.4:+15978505 | MS.gene72685:CDS |
| AAAAGCCGAGAGTCTTGTTC+TGG | 0.432484 | 5.4:+15979762 | MS.gene72685:CDS |
| CGTGCTTTACTACGTTATTG+AGG | 0.441119 | 5.4:+15978286 | MS.gene72685:CDS |
| ACGGAGAGATGCCCGTGTTA+GGG | 0.456877 | 5.4:+15980552 | MS.gene72685:CDS |
| GTCTTAGAGTTGAGAGAGAG+AGG | 0.459299 | 5.4:+15980512 | MS.gene72685:CDS |
| TATGCTAAGGGCATGTTTGA+CGG | 0.461515 | 5.4:+15978546 | MS.gene72685:CDS |
| CTGACTTTAACAGCTTCAAA+TGG | 0.463411 | 5.4:-15978504 | None:intergenic |
| GGGAGTTTACTCCAATGTAT+TGG | 0.465784 | 5.4:+15978407 | MS.gene72685:CDS |
| TTGTGCGATTCCTCCTTCCA+TGG | 0.468396 | 5.4:-15977251 | None:intergenic |
| GGCTAGCCAATTTATTTACC+AGG | 0.471960 | 5.4:+15979889 | MS.gene72685:CDS |
| CATTCCTCCAATGGTGCAAA+GGG | 0.480811 | 5.4:-15977296 | None:intergenic |
| CCTATTAGAATGTTGCTGGT+TGG | 0.483372 | 5.4:+15979918 | MS.gene72685:CDS |
| GTCCTTCTATAACTTTGCAA+TGG | 0.485403 | 5.4:+15979940 | MS.gene72685:CDS |
| GTGCTTTACTACGTTATTGA+GGG | 0.486855 | 5.4:+15978287 | MS.gene72685:CDS |
| TTCTTTGGCTATGGTGCTCA+AGG | 0.488078 | 5.4:+15978351 | MS.gene72685:CDS |
| GTGGGTCCAGTTCTGCAACC+TGG | 0.494750 | 5.4:-15980612 | None:intergenic |
| TGAGAGAGAGAGGTGGGGAA+GGG | 0.495763 | 5.4:+15980522 | MS.gene72685:CDS |
| TGTTTAGCTGGTTATACCGC+TGG | 0.496234 | 5.4:+15979679 | MS.gene72685:CDS |
| TATGCCCTTTGCACCATTGG+AGG | 0.515475 | 5.4:+15977292 | MS.gene72685:CDS |
| ACAGGCAAGTTCTTTGGCTA+TGG | 0.516450 | 5.4:+15978342 | MS.gene72685:CDS |
| GAAAAGGATCATGGCGGCCA+TGG | 0.517987 | 5.4:+15977234 | None:intergenic |
| AGCACAACCTAGTTATGCTA+AGG | 0.519278 | 5.4:+15978533 | MS.gene72685:CDS |
| TTGGCTATGGTGCTCAAGGA+GGG | 0.525340 | 5.4:+15978355 | MS.gene72685:CDS |
| CTAGGTGTGACATGTTTAGC+TGG | 0.525462 | 5.4:+15979667 | MS.gene72685:CDS |
| GTCCTGTGGAAAGGATGGAC+AGG | 0.530212 | 5.4:+15978324 | MS.gene72685:CDS |
| GAAGCTACTATATTATCAGC+AGG | 0.533613 | 5.4:-15979727 | None:intergenic |
| TTAACTTTCAAAACATCAAG+AGG | 0.535490 | 5.4:-15977352 | None:intergenic |
| GGAATGTTTCGACCCAAAAG+TGG | 0.540620 | 5.4:-15978724 | None:intergenic |
| TGCCTGTCCATCCTTTCCAC+AGG | 0.541611 | 5.4:-15978326 | None:intergenic |
| ACTACGTTATTGAGGGAACA+AGG | 0.543366 | 5.4:+15978294 | MS.gene72685:CDS |
| GGGCCTTCTGTCCTGTGGAA+AGG | 0.544497 | 5.4:+15978315 | MS.gene72685:CDS |
| CTTCTGTCCTGTGGAAAGGA+TGG | 0.546940 | 5.4:+15978319 | MS.gene72685:CDS |
| AATATACAAGACTTCTGTGC+TGG | 0.548042 | 5.4:-15978434 | None:intergenic |
| AGGATCATGGCGGCCATGGA+AGG | 0.551462 | 5.4:+15977238 | None:intergenic |
| TTTGGCTATGGTGCTCAAGG+AGG | 0.557751 | 5.4:+15978354 | MS.gene72685:CDS |
| GCATTCCTCCAATGGTGCAA+AGG | 0.561781 | 5.4:-15977297 | None:intergenic |
| GGTTATACCGCTGGATCCGT+TGG | 0.563265 | 5.4:+15979688 | MS.gene72685:CDS |
| ATTTGAAGCTGTTAAAGTCA+GGG | 0.563948 | 5.4:+15978506 | MS.gene72685:CDS |
| CATCCTTTCCACAGGACAGA+AGG | 0.566116 | 5.4:-15978318 | None:intergenic |
| AGCACTGAGCATTCCTCCAA+TGG | 0.567164 | 5.4:-15977305 | None:intergenic |
| CATGTTTGACGGCTTTCCAA+AGG | 0.568484 | 5.4:+15978557 | MS.gene72685:CDS |
| ATTGGAGGAATGCTCAGTGC+TGG | 0.571365 | 5.4:+15977307 | MS.gene72685:CDS |
| TGTTCAAAAGCTCAACAGCT+AGG | 0.578381 | 5.4:+15979649 | MS.gene72685:CDS |
| TTAGAGTTGAGAGAGAGAGG+TGG | 0.578878 | 5.4:+15980515 | MS.gene72685:CDS |
| AACAAGGGCCTTCTGTCCTG+TGG | 0.579264 | 5.4:+15978310 | MS.gene72685:CDS |
| AGAGTTGAGAGAGAGAGGTG+GGG | 0.583478 | 5.4:+15980517 | MS.gene72685:CDS |
| TGAAAATGGAAGCCCTAACA+CGG | 0.587307 | 5.4:-15980564 | None:intergenic |
| CATTCTAATAGGAAGACTCC+TGG | 0.594584 | 5.4:-15979907 | None:intergenic |
| ATCATGGCGGCCATGGAAGG+AGG | 0.596330 | 5.4:+15977241 | None:intergenic |
| GTGCAAAGGGCATAATACCT+TGG | 0.599144 | 5.4:-15977283 | None:intergenic |
| GTGCTGGTCTACCAATACAT+TGG | 0.601303 | 5.4:-15978418 | None:intergenic |
| GGTGGGGAAGGGAAACTGCA+CGG | 0.601435 | 5.4:+15980533 | MS.gene72685:CDS |
| CCAAAGGTATATGCAGCAGA+AGG | 0.616204 | 5.4:+15978573 | MS.gene72685:CDS |
| AAATACCAGAACAAGACTCT+CGG | 0.618357 | 5.4:-15979767 | None:intergenic |
| CTACGTTATTGAGGGAACAA+GGG | 0.623719 | 5.4:+15978295 | MS.gene72685:CDS |
| GCACAACCTAGTTATGCTAA+GGG | 0.624854 | 5.4:+15978534 | MS.gene72685:CDS |
| AGGAGTTGTAGCAAGATGAG+TGG | 0.639871 | 5.4:-15977332 | None:intergenic |
| CAAATACGCAGAGATGTGCA+AGG | 0.642824 | 5.4:+15980482 | MS.gene72685:intron |
| GAATGTTGAGAACATAACCA+TGG | 0.644534 | 5.4:-15979572 | None:intergenic |
| AACATGCCCTTAGCATAACT+AGG | 0.649459 | 5.4:-15978540 | None:intergenic |
| GAAAATGGAAGCCCTAACAC+GGG | 0.658416 | 5.4:-15980563 | None:intergenic |
| ATTAGAAACAAAGCTACCAA+CGG | 0.659190 | 5.4:-15979704 | None:intergenic |
| AAAGCTACCAACGGATCCAG+CGG | 0.665155 | 5.4:-15979695 | None:intergenic |
| TATGCAGCAGAAGGCGCACG+AGG | 0.673682 | 5.4:+15978582 | MS.gene72685:CDS |
| CCAAAAGTGGAACAAGTCCA+CGG | 0.677014 | 5.4:-15978711 | None:intergenic |
| AAATACGCAGAGATGTGCAA+GGG | 0.682597 | 5.4:+15980483 | MS.gene72685:intron |
| TCGCACAAGAATTAACGCCA+AGG | 0.686330 | 5.4:+15977266 | MS.gene72685:CDS |
| ATGCAGCAGAAGGCGCACGA+GGG | 0.753181 | 5.4:+15978583 | MS.gene72685:CDS |
| ACTGCTTGCAGATTCTACCG+TGG | 0.755591 | 5.4:+15978694 | MS.gene72685:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTGTAATATTTAATT+GGG | - | chr5.4:15978263-15978282 | None:intergenic | 10.0% |
| !! | CAAAGAAATTAAATAAAAAA+TGG | - | chr5.4:15977403-15977422 | None:intergenic | 10.0% |
| !! | ATAAAAAATGTGGAAAAATT+TGG | + | chr5.4:15977991-15978010 | MS.gene72685:intron | 15.0% |
| !! | ATATATTGTTACTAAACATT+AGG | - | chr5.4:15977825-15977844 | None:intergenic | 15.0% |
| !! | ATGTTTAGTAACAATATATT+TGG | + | chr5.4:15977826-15977845 | MS.gene72685:intron | 15.0% |
| !! | GAAATACTGTAATATTTAAT+TGG | - | chr5.4:15978264-15978283 | None:intergenic | 15.0% |
| !! | TAAAAAATGTGGAAAAATTT+GGG | + | chr5.4:15977992-15978011 | MS.gene72685:intron | 15.0% |
| !! | TAAATATGACTTAAAAGTTT+AGG | - | chr5.4:15980016-15980035 | None:intergenic | 15.0% |
| !!! | AAAACAGATTAGTTTTTTTT+TGG | + | chr5.4:15977927-15977946 | MS.gene72685:intron | 15.0% |
| !!! | AAACAGATTAGTTTTTTTTT+GGG | + | chr5.4:15977928-15977947 | MS.gene72685:intron | 15.0% |
| !!! | GAAAAACATTAGTTTTTTTT+TGG | + | chr5.4:15977696-15977715 | MS.gene72685:intron | 15.0% |
| !!! | TATTTTGTTACTAAACATTA+GGG | - | chr5.4:15977901-15977920 | None:intergenic | 15.0% |
| !!! | TTTTTTTAGTTTGTTTGATT+AGG | + | chr5.4:15977442-15977461 | MS.gene72685:intron | 15.0% |
| !! | AAAACCTATTACTAAACATT+AGG | - | chr5.4:15977537-15977556 | None:intergenic | 20.0% |
| !! | AAAATCATTCTCAAACATAA+AGG | - | chr5.4:15977959-15977978 | None:intergenic | 20.0% |
| !! | AAACCTATTACTAAACATTA+GGG | - | chr5.4:15977536-15977555 | None:intergenic | 20.0% |
| !! | AAATCATTCTCAAACATAAA+GGG | - | chr5.4:15977958-15977977 | None:intergenic | 20.0% |
| !! | AAGATCAATTCTAAACATTA+GGG | - | chr5.4:15978188-15978207 | None:intergenic | 20.0% |
| !! | AATGTTTAGTAGCAATTTAT+GGG | + | chr5.4:15977669-15977688 | MS.gene72685:intron | 20.0% |
| !! | ACTTAAATTCAAAATCTACA+AGG | + | chr5.4:15980356-15980375 | MS.gene72685:intron | 20.0% |
| !! | ATAAATTGCTACTAAACATT+AGG | - | chr5.4:15977669-15977688 | None:intergenic | 20.0% |
| !! | ATGTTTAGTAACAAAATACA+TGG | + | chr5.4:15977903-15977922 | MS.gene72685:intron | 20.0% |
| !! | TAAATTGCTACTAAACATTA+GGG | - | chr5.4:15977668-15977687 | None:intergenic | 20.0% |
| !! | TAATGTTTAGTAGCAATTTA+TGG | + | chr5.4:15977668-15977687 | MS.gene72685:intron | 20.0% |
| !! | TTAAATAAAGTTTCAAGAGA+TGG | - | chr5.4:15978761-15978780 | None:intergenic | 20.0% |
| !!! | AACAGATTAGTTTTTTTTTG+GGG | + | chr5.4:15977929-15977948 | MS.gene72685:intron | 20.0% |
| !!! | ATTTGGATAAACAGTTTTTT+TGG | + | chr5.4:15977843-15977862 | MS.gene72685:intron | 20.0% |
| !!! | GTATTTTGTTACTAAACATT+AGG | - | chr5.4:15977902-15977921 | None:intergenic | 20.0% |
| !!! | GTTAAAGTATTATTTATCTG+TGG | + | chr5.4:15980073-15980092 | MS.gene72685:intron | 20.0% |
| !!! | TTTGATTAGGTTTTAGAAAT+GGG | + | chr5.4:15977455-15977474 | MS.gene72685:intron | 20.0% |
| !!! | TTTGGATAAACAGTTTTTTT+GGG | + | chr5.4:15977844-15977863 | MS.gene72685:intron | 20.0% |
| ! | AAAATCACTCTCAAACATAA+AGG | - | chr5.4:15977571-15977590 | None:intergenic | 25.0% |
| ! | AAAATCATACTCAACACAAA+AGG | - | chr5.4:15977510-15977529 | None:intergenic | 25.0% |
| ! | AAATCACTCTCAAACATAAA+GGG | - | chr5.4:15977570-15977589 | None:intergenic | 25.0% |
| ! | AAATCATACTCAACACAAAA+GGG | - | chr5.4:15977509-15977528 | None:intergenic | 25.0% |
| ! | AATTCATTCTCATCCATAAA+AGG | - | chr5.4:15977797-15977816 | None:intergenic | 25.0% |
| ! | ACACTAATGCATAAAAAATG+TGG | + | chr5.4:15977981-15978000 | MS.gene72685:intron | 25.0% |
| ! | AGCAAAGTAAAAGACAAAAT+TGG | + | chr5.4:15980101-15980120 | MS.gene72685:intron | 25.0% |
| ! | ATGTTTAGTAGCAATTTATG+GGG | + | chr5.4:15977670-15977689 | MS.gene72685:intron | 25.0% |
| ! | ATTCATTCTCATCCATAAAA+GGG | - | chr5.4:15977796-15977815 | None:intergenic | 25.0% |
| ! | ATTTAATCTTGCACTAGTTA+GGG | + | chr5.4:15978775-15978794 | MS.gene72685:intron | 25.0% |
| ! | ATTTGATTGATCAGGTTATA+GGG | + | chr5.4:15979150-15979169 | MS.gene72685:intron | 25.0% |
| ! | CAAGATCAATTCTAAACATT+AGG | - | chr5.4:15978189-15978208 | None:intergenic | 25.0% |
| ! | CAATGTTGTCAAAAGAAAAA+AGG | + | chr5.4:15979621-15979640 | MS.gene72685:CDS | 25.0% |
| ! | GTGGGAAAATTGAATATTTA+TGG | + | chr5.4:15977767-15977786 | MS.gene72685:intron | 25.0% |
| ! | TATACTTAAAGATGTTTAGC+TGG | + | chr5.4:15978897-15978916 | MS.gene72685:intron | 25.0% |
| ! | TATTTAATCTTGCACTAGTT+AGG | + | chr5.4:15978774-15978793 | MS.gene72685:intron | 25.0% |
| ! | TATTTGATTGATCAGGTTAT+AGG | + | chr5.4:15979149-15979168 | MS.gene72685:intron | 25.0% |
| ! | TTAACTTTCAAAACATCAAG+AGG | - | chr5.4:15977355-15977374 | None:intergenic | 25.0% |
| ! | TTTGGTATCTTTATCATATC+TGG | + | chr5.4:15979046-15979065 | MS.gene72685:intron | 25.0% |
| !! | AAGTATTCAGTCTATTCTTT+TGG | + | chr5.4:15979254-15979273 | MS.gene72685:intron | 25.0% |
| !! | CTGCGTATTTGTTAAAAAAT+TGG | - | chr5.4:15980473-15980492 | None:intergenic | 25.0% |
| !! | TAACTGTTGATTATTGAGTT+TGG | + | chr5.4:15980169-15980188 | MS.gene72685:intron | 25.0% |
| !! | TATTTATGGTTACCCTTTTA+TGG | + | chr5.4:15977781-15977800 | MS.gene72685:intron | 25.0% |
| !! | TTTCTCTTTGGTATATGTTT+TGG | + | chr5.4:15979028-15979047 | MS.gene72685:intron | 25.0% |
| !!! | AGTATCCTGTTTTTTTTTGT+TGG | + | chr5.4:15979542-15979561 | MS.gene72685:intron | 25.0% |
| !!! | ATTGTGTTCCACTTATTTTA+TGG | + | chr5.4:15979847-15979866 | MS.gene72685:intron | 25.0% |
| !!! | GTGGAAAAGTTGAAATTTTT+TGG | + | chr5.4:15977611-15977630 | MS.gene72685:intron | 25.0% |
| !!! | GTTTGATTAGGTTTTAGAAA+TGG | + | chr5.4:15977454-15977473 | MS.gene72685:intron | 25.0% |
| !!! | TTGATTAGGTTTTAGAAATG+GGG | + | chr5.4:15977456-15977475 | MS.gene72685:intron | 25.0% |
| AAAATTTCCAGACACTAAGT+AGG | - | chr5.4:15979072-15979091 | None:intergenic | 30.0% | |
| AAAGATGTTTAGCTGGAAAT+TGG | + | chr5.4:15978904-15978923 | MS.gene72685:intron | 30.0% | |
| AAATCATTCTCATCCATGAA+AGG | - | chr5.4:15977641-15977660 | None:intergenic | 30.0% | |
| AAATGGACATAGAGCTAAAT+TGG | - | chr5.4:15978490-15978509 | None:intergenic | 30.0% | |
| AACATAACTCTCAAGCATAA+AGG | - | chr5.4:15977726-15977745 | None:intergenic | 30.0% | |
| AACCATTGCAAAGTTATAGA+AGG | - | chr5.4:15979945-15979964 | None:intergenic | 30.0% | |
| AAGACTCCTGGTAAATAAAT+TGG | - | chr5.4:15979898-15979917 | None:intergenic | 30.0% | |
| AAGTGTTTGTAGTGATTGAA+AGG | - | chr5.4:15980330-15980349 | None:intergenic | 30.0% | |
| ACATAACTCTCAAGCATAAA+GGG | - | chr5.4:15977725-15977744 | None:intergenic | 30.0% | |
| ACTGTCCAACAAAAAAAAAC+AGG | - | chr5.4:15979550-15979569 | None:intergenic | 30.0% | |
| AGAGTTATGTTTCACACTAA+TGG | + | chr5.4:15977735-15977754 | MS.gene72685:intron | 30.0% | |
| ATATACCAAAGAGAAAAGCA+AGG | - | chr5.4:15979024-15979043 | None:intergenic | 30.0% | |
| ATCAATTCTAAACATTAGGG+TGG | - | chr5.4:15978185-15978204 | None:intergenic | 30.0% | |
| ATTAGAAACAAAGCTACCAA+CGG | - | chr5.4:15979707-15979726 | None:intergenic | 30.0% | |
| GAGAAACTATTTGATTGATC+AGG | + | chr5.4:15979142-15979161 | MS.gene72685:intron | 30.0% | |
| GTACCCTAATGTTTAGTAAT+AGG | + | chr5.4:15977530-15977549 | MS.gene72685:intron | 30.0% | |
| GTTCGCGTTATCATATTTAA+TGG | + | chr5.4:15978208-15978227 | MS.gene72685:intron | 30.0% | |
| TGGAAAATCATTCTCACAAA+GGG | - | chr5.4:15978165-15978184 | None:intergenic | 30.0% | |
| TGTTGTCAAAAGAAAAAAGG+AGG | + | chr5.4:15979624-15979643 | MS.gene72685:CDS | 30.0% | |
| TTGCTTCTTTGCAATTCATT+TGG | + | chr5.4:15979788-15979807 | MS.gene72685:intron | 30.0% | |
| ! | ACACTAATGGACAAAAAATG+TGG | + | chr5.4:15977748-15977767 | MS.gene72685:intron | 30.0% |
| ! | ACACTAATGGACAAAATATG+TGG | + | chr5.4:15977592-15977611 | MS.gene72685:intron | 30.0% |
| ! | ATTTGAAGCTGTTAAAGTCA+GGG | + | chr5.4:15978506-15978525 | MS.gene72685:CDS | 30.0% |
| ! | CACTAATGGACAAAAAATGT+GGG | + | chr5.4:15977749-15977768 | MS.gene72685:intron | 30.0% |
| ! | CCATTTTCATCCAGAAAAAT+AGG | + | chr5.4:15980578-15980597 | MS.gene72685:CDS | 30.0% |
| ! | GTGGAAAACTTGACTATTTT+TGG | + | chr5.4:15978136-15978155 | MS.gene72685:intron | 30.0% |
| ! | GTGTAATACTACTTTAGCTT+AGG | - | chr5.4:15980412-15980431 | None:intergenic | 30.0% |
| ! | TACGACACTATCAAAGTTTT+AGG | + | chr5.4:15979969-15979988 | MS.gene72685:CDS | 30.0% |
| ! | TCAAAATCGAGATTTTGCTT+AGG | + | chr5.4:15980222-15980241 | MS.gene72685:intron | 30.0% |
| ! | TGGTCTCTACGAATATTTTA+AGG | + | chr5.4:15978386-15978405 | MS.gene72685:CDS | 30.0% |
| ! | TTCATGGATGAGAATGATTT+TGG | + | chr5.4:15977641-15977660 | MS.gene72685:intron | 30.0% |
| ! | TTGTTAGTTTATCAACCAAC+TGG | - | chr5.4:15979185-15979204 | None:intergenic | 30.0% |
| !! | AACTTCTTTAAAGCTAAGCA+TGG | + | chr5.4:15979359-15979378 | MS.gene72685:intron | 30.0% |
| !! | CCTATTTTTCTGGATGAAAA+TGG | - | chr5.4:15980581-15980600 | None:intergenic | 30.0% |
| !! | GGTCTCTACGAATATTTTAA+GGG | + | chr5.4:15978387-15978406 | MS.gene72685:CDS | 30.0% |
| !! | TGCTAGAAAACCTATTTTTC+TGG | - | chr5.4:15980591-15980610 | None:intergenic | 30.0% |
| !!! | ATTTTTTGGCTAACCTTTCA+TGG | + | chr5.4:15977625-15977644 | MS.gene72685:intron | 30.0% |
| !!! | TGTTTTGAAAGTTAACATGC+AGG | + | chr5.4:15977360-15977379 | MS.gene72685:CDS | 30.0% |
| AAATACCAGAACAAGACTCT+CGG | - | chr5.4:15979770-15979789 | None:intergenic | 35.0% | |
| AAATGGGGAAGTGGAAAAAT+TGG | + | chr5.4:15977471-15977490 | MS.gene72685:intron | 35.0% | |
| AATATACAAGACTTCTGTGC+TGG | - | chr5.4:15978437-15978456 | None:intergenic | 35.0% | |
| ACAAATTTCATCACCATCAC+AGG | - | chr5.4:15979456-15979475 | None:intergenic | 35.0% | |
| AGCTGAACTCTTAGATTATC+AGG | + | chr5.4:15978072-15978091 | MS.gene72685:intron | 35.0% | |
| ATAGCCTGCCATAAAATAAG+TGG | - | chr5.4:15979858-15979877 | None:intergenic | 35.0% | |
| CAAGAGATGGTGAAATTACA+TGG | - | chr5.4:15978748-15978767 | None:intergenic | 35.0% | |
| CACTATTACAACATAGTCAC+AGG | - | chr5.4:15979302-15979321 | None:intergenic | 35.0% | |
| CATGAACACTATCTTTATGC+TGG | + | chr5.4:15978830-15978849 | MS.gene72685:intron | 35.0% | |
| CGCGTTATCATATTTAATGG+AGG | + | chr5.4:15978211-15978230 | MS.gene72685:intron | 35.0% | |
| CTACTTTGCCTCTAACATTA+AGG | - | chr5.4:15980202-15980221 | None:intergenic | 35.0% | |
| CTGACTTTAACAGCTTCAAA+TGG | - | chr5.4:15978507-15978526 | None:intergenic | 35.0% | |
| CTTGATGTGCATCTATCTTT+AGG | + | chr5.4:15978637-15978656 | MS.gene72685:intron | 35.0% | |
| GAAGCTACTATATTATCAGC+AGG | - | chr5.4:15979730-15979749 | None:intergenic | 35.0% | |
| GAAGTGAACCTTAATGTTAG+AGG | + | chr5.4:15980191-15980210 | MS.gene72685:intron | 35.0% | |
| GAAGTGATGTTGTTACATGT+AGG | + | chr5.4:15978233-15978252 | MS.gene72685:intron | 35.0% | |
| GAATGTTGAGAACATAACCA+TGG | - | chr5.4:15979575-15979594 | None:intergenic | 35.0% | |
| GAGTGTTCAGTATATTCTTC+TGG | + | chr5.4:15979383-15979402 | MS.gene72685:intron | 35.0% | |
| GCTGAACTCTTAGATTATCA+GGG | + | chr5.4:15978073-15978092 | MS.gene72685:intron | 35.0% | |
| GCTGCTTAACAACTCTAAAT+AGG | + | chr5.4:15980432-15980451 | MS.gene72685:intron | 35.0% | |
| GGTTAAGACAGAACAAAATG+TGG | + | chr5.4:15978117-15978136 | MS.gene72685:intron | 35.0% | |
| GTCCTTCTATAACTTTGCAA+TGG | + | chr5.4:15979940-15979959 | MS.gene72685:CDS | 35.0% | |
| GTGCTTTACTACGTTATTGA+GGG | + | chr5.4:15978287-15978306 | MS.gene72685:CDS | 35.0% | |
| GTGGAAAATCATTCTCACAA+AGG | - | chr5.4:15978166-15978185 | None:intergenic | 35.0% | |
| TCTTCCTATTAGAATGTTGC+TGG | + | chr5.4:15979914-15979933 | MS.gene72685:CDS | 35.0% | |
| TGCAACAGAGCAAACTATAA+AGG | - | chr5.4:15980041-15980060 | None:intergenic | 35.0% | |
| TTAGTAGCAATTTATGGGGA+TGG | + | chr5.4:15977674-15977693 | MS.gene72685:intron | 35.0% | |
| TTATTGTTAGTCACATGCTG+AGG | + | chr5.4:15979116-15979135 | MS.gene72685:intron | 35.0% | |
| TTGAAAGTTAACATGCAGGT+TGG | + | chr5.4:15977364-15977383 | MS.gene72685:intron | 35.0% | |
| ! | ATCGAGATTTTGCTTAGGAT+CGG | + | chr5.4:15980227-15980246 | MS.gene72685:intron | 35.0% |
| ! | ATTTTGCTTAGGATCGGAAA+GGG | + | chr5.4:15980233-15980252 | MS.gene72685:intron | 35.0% |
| ! | CATTTGAAGCTGTTAAAGTC+AGG | + | chr5.4:15978505-15978524 | MS.gene72685:CDS | 35.0% |
| ! | GAGAGTGATTTTCACACTAA+TGG | + | chr5.4:15977579-15977598 | MS.gene72685:intron | 35.0% |
| ! | TTTTTGTTGGACAGTTTCCA+TGG | + | chr5.4:15979555-15979574 | MS.gene72685:intron | 35.0% |
| !! | AAATAGGTTTTCTAGCAACC+AGG | + | chr5.4:15980594-15980613 | MS.gene72685:CDS | 35.0% |
| !! | TTTTGACTAAGTTCCTGTGA+TGG | + | chr5.4:15979440-15979459 | MS.gene72685:intron | 35.0% |
| !!! | GACACTATCAAAGTTTTAGG+CGG | + | chr5.4:15979972-15979991 | MS.gene72685:CDS | 35.0% |
| !!! | TGTTCCACTTATTTTATGGC+AGG | + | chr5.4:15979851-15979870 | MS.gene72685:intron | 35.0% |
| AAATACGCAGAGATGTGCAA+GGG | + | chr5.4:15980483-15980502 | MS.gene72685:intron | 40.0% | |
| AAATCACTCCCAGACCTATA+AGG | - | chr5.4:15977874-15977893 | None:intergenic | 40.0% | |
| AACATGCCCTTAGCATAACT+AGG | - | chr5.4:15978543-15978562 | None:intergenic | 40.0% | |
| AACCTGACTGGAACAATCAT+TGG | + | chr5.4:15978029-15978048 | MS.gene72685:intron | 40.0% | |
| AAGGTTGAGAAAGAGAGAGT+TGG | - | chr5.4:15980311-15980330 | None:intergenic | 40.0% | |
| AATCACTCCCAGACCTATAA+GGG | - | chr5.4:15977873-15977892 | None:intergenic | 40.0% | |
| AATCTAAGAGTTCAGCTGAG+AGG | - | chr5.4:15978069-15978088 | None:intergenic | 40.0% | |
| ACTACGTTATTGAGGGAACA+AGG | + | chr5.4:15978294-15978313 | MS.gene72685:CDS | 40.0% | |
| AGCACAACCTAGTTATGCTA+AGG | + | chr5.4:15978533-15978552 | MS.gene72685:CDS | 40.0% | |
| CATTCTAATAGGAAGACTCC+TGG | - | chr5.4:15979910-15979929 | None:intergenic | 40.0% | |
| CCAACCAGCAACATTCTAAT+AGG | - | chr5.4:15979921-15979940 | None:intergenic | 40.0% | |
| CCTATTAGAATGTTGCTGGT+TGG | + | chr5.4:15979918-15979937 | MS.gene72685:CDS | 40.0% | |
| CGTGCTTTACTACGTTATTG+AGG | + | chr5.4:15978286-15978305 | MS.gene72685:CDS | 40.0% | |
| CTACGTTATTGAGGGAACAA+GGG | + | chr5.4:15978295-15978314 | MS.gene72685:CDS | 40.0% | |
| GAGTGAAGATCGTAAGTTGT+GGG | + | chr5.4:15980256-15980275 | MS.gene72685:intron | 40.0% | |
| GCACAACCTAGTTATGCTAA+GGG | + | chr5.4:15978534-15978553 | MS.gene72685:CDS | 40.0% | |
| GGCAGGCTATCAGAAAAATT+GGG | + | chr5.4:15979868-15979887 | MS.gene72685:intron | 40.0% | |
| GGGAGTTTACTCCAATGTAT+TGG | + | chr5.4:15978407-15978426 | MS.gene72685:CDS | 40.0% | |
| TATTATGCCCTTTGCACCAT+TGG | + | chr5.4:15977289-15977308 | MS.gene72685:CDS | 40.0% | |
| TGAAAATGGAAGCCCTAACA+CGG | - | chr5.4:15980567-15980586 | None:intergenic | 40.0% | |
| TGACTGGAACAATCATTGGT+CGG | + | chr5.4:15978033-15978052 | MS.gene72685:intron | 40.0% | |
| TGGCAGGCTATCAGAAAAAT+TGG | + | chr5.4:15979867-15979886 | MS.gene72685:intron | 40.0% | |
| TGTTCAAAAGCTCAACAGCT+AGG | + | chr5.4:15979649-15979668 | MS.gene72685:CDS | 40.0% | |
| TTTCTGAGTTTGAACCTGAC+TGG | + | chr5.4:15978017-15978036 | MS.gene72685:intron | 40.0% | |
| ! | ATAGGGCATTAGTTACCAGT+TGG | + | chr5.4:15979167-15979186 | MS.gene72685:intron | 40.0% |
| ! | GATTTTGCTTAGGATCGGAA+AGG | + | chr5.4:15980232-15980251 | MS.gene72685:intron | 40.0% |
| ! | GGCTAGCCAATTTATTTACC+AGG | + | chr5.4:15979889-15979908 | MS.gene72685:CDS | 40.0% |
| ! | TATGCTAAGGGCATGTTTGA+CGG | + | chr5.4:15978546-15978565 | MS.gene72685:CDS | 40.0% |
| ! | TTTTGCTTAGGATCGGAAAG+GGG | + | chr5.4:15980234-15980253 | MS.gene72685:intron | 40.0% |
| !! | TTACGCCTTGCTTTTCTCTT+TGG | + | chr5.4:15979016-15979035 | MS.gene72685:intron | 40.0% |
| !!! | AGGTTTTAGAAATGGGGAAG+TGG | + | chr5.4:15977462-15977481 | MS.gene72685:intron | 40.0% |
| !!! | TTTTTTTGGGCTGCCCTTAT+AGG | + | chr5.4:15977857-15977876 | MS.gene72685:intron | 40.0% |
| ACAGGCAAGTTCTTTGGCTA+TGG | + | chr5.4:15978342-15978361 | MS.gene72685:CDS | 45.0% | |
| AGGAGTTGTAGCAAGATGAG+TGG | - | chr5.4:15977335-15977354 | None:intergenic | 45.0% | |
| ATTATCAGGGCCGTTTCTCT+AGG | + | chr5.4:15978086-15978105 | MS.gene72685:intron | 45.0% | |
| CAAATACGCAGAGATGTGCA+AGG | + | chr5.4:15980482-15980501 | MS.gene72685:intron | 45.0% | |
| CATGTTTGACGGCTTTCCAA+AGG | + | chr5.4:15978557-15978576 | MS.gene72685:CDS | 45.0% | |
| CATTCCTCCAATGGTGCAAA+GGG | - | chr5.4:15977299-15977318 | None:intergenic | 45.0% | |
| CCAAAAGTGGAACAAGTCCA+CGG | - | chr5.4:15978714-15978733 | None:intergenic | 45.0% | |
| CCTTCTGCTGCATATACCTT+TGG | - | chr5.4:15978576-15978595 | None:intergenic | 45.0% | |
| CTAGGTGTGACATGTTTAGC+TGG | + | chr5.4:15979667-15979686 | MS.gene72685:CDS | 45.0% | |
| GAAAATGGAAGCCCTAACAC+GGG | - | chr5.4:15980566-15980585 | None:intergenic | 45.0% | |
| GACCAATGATTGTTCCAGTC+AGG | - | chr5.4:15978034-15978053 | None:intergenic | 45.0% | |
| GGAATGTTTCGACCCAAAAG+TGG | - | chr5.4:15978727-15978746 | None:intergenic | 45.0% | |
| GGAGTGAAGATCGTAAGTTG+TGG | + | chr5.4:15980255-15980274 | MS.gene72685:intron | 45.0% | |
| GTCTTAGAGTTGAGAGAGAG+AGG | + | chr5.4:15980512-15980531 | MS.gene72685:CDS | 45.0% | |
| TAGAGTTGAGAGAGAGAGGT+GGG | + | chr5.4:15980516-15980535 | MS.gene72685:CDS | 45.0% | |
| TATCTGGCCTACTTAGTGTC+TGG | + | chr5.4:15979062-15979081 | MS.gene72685:intron | 45.0% | |
| TCGCACAAGAATTAACGCCA+AGG | + | chr5.4:15977266-15977285 | MS.gene72685:CDS | 45.0% | |
| TGTTTAGCTGGTTATACCGC+TGG | + | chr5.4:15979679-15979698 | MS.gene72685:CDS | 45.0% | |
| TTAGAGTTGAGAGAGAGAGG+TGG | + | chr5.4:15980515-15980534 | MS.gene72685:CDS | 45.0% | |
| TTCTTTGGCTATGGTGCTCA+AGG | + | chr5.4:15978351-15978370 | MS.gene72685:CDS | 45.0% | |
| ! | CCAAAGGTATATGCAGCAGA+AGG | + | chr5.4:15978573-15978592 | MS.gene72685:CDS | 45.0% |
| ! | GTGCAAAGGGCATAATACCT+TGG | - | chr5.4:15977286-15977305 | None:intergenic | 45.0% |
| ! | GTGCTGGTCTACCAATACAT+TGG | - | chr5.4:15978421-15978440 | None:intergenic | 45.0% |
| !! | AAAAGCCGAGAGTCTTGTTC+TGG | + | chr5.4:15979762-15979781 | MS.gene72685:CDS | 45.0% |
| !! | CGTGGACTTGTTCCACTTTT+GGG | + | chr5.4:15978712-15978731 | MS.gene72685:CDS | 45.0% |
| !!! | AAATTTCAATAAATTTTAAT+GGG | - | chr5.4:15980140-15980159 | None:intergenic | 5.0% |
| !!! | TAAATTTCAATAAATTTTAA+TGG | - | chr5.4:15980141-15980160 | None:intergenic | 5.0% |
| AAAGCTACCAACGGATCCAG+CGG | - | chr5.4:15979698-15979717 | None:intergenic | 50.0% | |
| ACTGCTTGCAGATTCTACCG+TGG | + | chr5.4:15978694-15978713 | MS.gene72685:intron | 50.0% | |
| AGAGTTGAGAGAGAGAGGTG+GGG | + | chr5.4:15980517-15980536 | MS.gene72685:CDS | 50.0% | |
| ATTGGAGGAATGCTCAGTGC+TGG | + | chr5.4:15977307-15977326 | MS.gene72685:CDS | 50.0% | |
| CATCCTTTCCACAGGACAGA+AGG | - | chr5.4:15978321-15978340 | None:intergenic | 50.0% | |
| CCCTCCAGTTCCTAGAGAAA+CGG | - | chr5.4:15978099-15978118 | None:intergenic | 50.0% | |
| CTTCTGTCCTGTGGAAAGGA+TGG | + | chr5.4:15978319-15978338 | MS.gene72685:CDS | 50.0% | |
| GCATTCCTCCAATGGTGCAA+AGG | - | chr5.4:15977300-15977319 | None:intergenic | 50.0% | |
| GGATGGACAGGCAAGTTCTT+TGG | + | chr5.4:15978336-15978355 | MS.gene72685:CDS | 50.0% | |
| TAGCAACCAGGTTGCAGAAC+TGG | + | chr5.4:15980606-15980625 | MS.gene72685:CDS | 50.0% | |
| TATGCCCTTTGCACCATTGG+AGG | + | chr5.4:15977292-15977311 | MS.gene72685:CDS | 50.0% | |
| TTGGCTATGGTGCTCAAGGA+GGG | + | chr5.4:15978355-15978374 | MS.gene72685:CDS | 50.0% | |
| TTGTGCGATTCCTCCTTCCA+TGG | - | chr5.4:15977254-15977273 | None:intergenic | 50.0% | |
| TTTGGCTATGGTGCTCAAGG+AGG | + | chr5.4:15978354-15978373 | MS.gene72685:CDS | 50.0% | |
| ! | AGCACTGAGCATTCCTCCAA+TGG | - | chr5.4:15977308-15977327 | None:intergenic | 50.0% |
| ! | CCGTTTCTCTAGGAACTGGA+GGG | + | chr5.4:15978096-15978115 | MS.gene72685:intron | 50.0% |
| !! | CCGTGGACTTGTTCCACTTT+TGG | + | chr5.4:15978711-15978730 | MS.gene72685:CDS | 50.0% |
| AACAAGGGCCTTCTGTCCTG+TGG | + | chr5.4:15978310-15978329 | MS.gene72685:CDS | 55.0% | |
| ACGGAGAGATGCCCGTGTTA+GGG | + | chr5.4:15980552-15980571 | MS.gene72685:CDS | 55.0% | |
| GGTTATACCGCTGGATCCGT+TGG | + | chr5.4:15979688-15979707 | MS.gene72685:CDS | 55.0% | |
| GTCCTGTGGAAAGGATGGAC+AGG | + | chr5.4:15978324-15978343 | MS.gene72685:CDS | 55.0% | |
| TGAGAGAGAGAGGTGGGGAA+GGG | + | chr5.4:15980522-15980541 | MS.gene72685:CDS | 55.0% | |
| TGCCTGTCCATCCTTTCCAC+AGG | - | chr5.4:15978329-15978348 | None:intergenic | 55.0% | |
| TGGGCTGCCCTTATAGGTCT+GGG | + | chr5.4:15977863-15977882 | MS.gene72685:intron | 55.0% | |
| TTGAGAGAGAGAGGTGGGGA+AGG | + | chr5.4:15980521-15980540 | MS.gene72685:CDS | 55.0% | |
| TTGGGCTGCCCTTATAGGTC+TGG | + | chr5.4:15977862-15977881 | MS.gene72685:intron | 55.0% | |
| ! | AGGGCCGTTTCTCTAGGAAC+TGG | + | chr5.4:15978092-15978111 | MS.gene72685:intron | 55.0% |
| ! | GCCGTTTCTCTAGGAACTGG+AGG | + | chr5.4:15978095-15978114 | MS.gene72685:intron | 55.0% |
| ! | GCTCAAGGAGGGTGCAGATT+TGG | + | chr5.4:15978366-15978385 | MS.gene72685:CDS | 55.0% |
| CACGGAGAGATGCCCGTGTT+AGG | + | chr5.4:15980551-15980570 | MS.gene72685:CDS | 60.0% | |
| GGGCCTTCTGTCCTGTGGAA+AGG | + | chr5.4:15978315-15978334 | MS.gene72685:CDS | 60.0% | |
| GGTGGGGAAGGGAAACTGCA+CGG | + | chr5.4:15980533-15980552 | MS.gene72685:CDS | 60.0% | |
| GTGGGTCCAGTTCTGCAACC+TGG | - | chr5.4:15980615-15980634 | None:intergenic | 60.0% | |
| ! | ATGCAGCAGAAGGCGCACGA+GGG | + | chr5.4:15978583-15978602 | MS.gene72685:CDS | 60.0% |
| ! | TATGCAGCAGAAGGCGCACG+AGG | + | chr5.4:15978582-15978601 | MS.gene72685:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15977244 | 15980649 | 15977244 | ID=MS.gene72685 |
| chr5.4 | mRNA | 15977244 | 15980649 | 15977244 | ID=MS.gene72685.t1;Parent=MS.gene72685 |
| chr5.4 | exon | 15977244 | 15977381 | 15977244 | ID=MS.gene72685.t1.exon1;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15977244 | 15977381 | 15977244 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| chr5.4 | exon | 15978255 | 15978604 | 15978255 | ID=MS.gene72685.t1.exon2;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15978255 | 15978604 | 15978255 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| chr5.4 | exon | 15978705 | 15978748 | 15978705 | ID=MS.gene72685.t1.exon3;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15978705 | 15978748 | 15978705 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| chr5.4 | exon | 15979569 | 15979783 | 15979569 | ID=MS.gene72685.t1.exon4;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15979569 | 15979783 | 15979569 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| chr5.4 | exon | 15979873 | 15979997 | 15979873 | ID=MS.gene72685.t1.exon5;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15979873 | 15979997 | 15979873 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| chr5.4 | exon | 15980493 | 15980649 | 15980493 | ID=MS.gene72685.t1.exon6;Parent=MS.gene72685.t1 |
| chr5.4 | CDS | 15980493 | 15980649 | 15980493 | ID=cds.MS.gene72685.t1;Parent=MS.gene72685.t1 |
| Gene Sequence |
| Protein sequence |
