Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74945.t1 | XP_013470314.1 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 2.50E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74945.t1 | Q9C9X3 | 55.2 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.3e-94 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74945.t1 | A0A072VRI5 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 1.8e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45772 | MS.gene74945 | PPI |
| MS.gene061777 | MS.gene74945 | PPI |
| MS.gene74945 | MS.gene89484 | PPI |
| MS.gene74945 | MS.gene035891 | PPI |
| MS.gene056195 | MS.gene74945 | PPI |
| MS.gene74945 | MS.gene010215 | PPI |
| MS.gene74945 | MS.gene92405 | PPI |
| MS.gene016642 | MS.gene74945 | PPI |
| MS.gene28077 | MS.gene74945 | PPI |
| MS.gene74945 | MS.gene030809 | PPI |
| MS.gene74945 | MS.gene043964 | PPI |
| MS.gene74945 | MS.gene55897 | PPI |
| MS.gene74945 | MS.gene00058 | PPI |
| MS.gene74945 | MS.gene058336 | PPI |
| MS.gene57291 | MS.gene74945 | PPI |
| MS.gene74945 | MS.gene67887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74945.t1 | MTR_1g112520 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 639 |
| MS.gene74945.t1 | MTR_6g071615 | 91.746 | 315 | 26 | 0 | 1 | 315 | 1 | 315 | 0.0 | 588 |
| MS.gene74945.t1 | MTR_6g071605 | 88.254 | 315 | 37 | 0 | 1 | 315 | 1 | 315 | 0.0 | 583 |
| MS.gene74945.t1 | MTR_6g071595 | 90.794 | 315 | 29 | 0 | 1 | 315 | 1 | 315 | 0.0 | 559 |
| MS.gene74945.t1 | MTR_8g107640 | 78.662 | 314 | 67 | 0 | 1 | 314 | 1 | 314 | 0.0 | 533 |
| MS.gene74945.t1 | MTR_6g071595 | 89.200 | 250 | 27 | 0 | 1 | 250 | 1 | 250 | 1.27e-161 | 451 |
| MS.gene74945.t1 | MTR_1g033560 | 60.063 | 318 | 121 | 3 | 1 | 315 | 1 | 315 | 5.75e-138 | 393 |
| MS.gene74945.t1 | MTR_8g038150 | 38.486 | 317 | 188 | 3 | 1 | 312 | 1 | 315 | 7.24e-72 | 225 |
| MS.gene74945.t1 | MTR_3g018780 | 37.778 | 315 | 193 | 3 | 1 | 314 | 1 | 313 | 2.91e-69 | 218 |
| MS.gene74945.t1 | MTR_8g038180 | 37.975 | 316 | 193 | 3 | 1 | 315 | 1 | 314 | 2.97e-68 | 216 |
| MS.gene74945.t1 | MTR_8g038220 | 37.580 | 314 | 191 | 4 | 1 | 312 | 1 | 311 | 9.42e-68 | 214 |
| MS.gene74945.t1 | MTR_8g038220 | 37.580 | 314 | 190 | 4 | 1 | 312 | 1 | 310 | 1.32e-67 | 214 |
| MS.gene74945.t1 | MTR_5g063670 | 37.304 | 319 | 190 | 5 | 1 | 314 | 1 | 314 | 4.11e-67 | 213 |
| MS.gene74945.t1 | MTR_3g018790 | 38.339 | 313 | 190 | 3 | 1 | 312 | 1 | 311 | 5.84e-67 | 212 |
| MS.gene74945.t1 | MTR_0276s0050 | 37.261 | 314 | 193 | 3 | 1 | 312 | 1 | 312 | 3.70e-65 | 207 |
| MS.gene74945.t1 | MTR_2g031980 | 36.306 | 314 | 195 | 4 | 1 | 312 | 1 | 311 | 2.16e-64 | 206 |
| MS.gene74945.t1 | MTR_8g038210 | 35.577 | 312 | 199 | 2 | 1 | 312 | 1 | 310 | 5.16e-61 | 197 |
| MS.gene74945.t1 | MTR_8g038210 | 35.144 | 313 | 201 | 2 | 1 | 313 | 1 | 311 | 8.10e-60 | 194 |
| MS.gene74945.t1 | MTR_3g018790 | 33.610 | 241 | 158 | 2 | 74 | 313 | 19 | 258 | 1.26e-40 | 142 |
| MS.gene74945.t1 | MTR_6g028030 | 32.117 | 274 | 178 | 5 | 45 | 310 | 34 | 307 | 5.00e-40 | 142 |
| MS.gene74945.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene74945.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene74945.t1 | MTR_3g018920 | 33.491 | 212 | 108 | 3 | 1 | 212 | 1 | 179 | 1.55e-29 | 111 |
| MS.gene74945.t1 | MTR_3g018925 | 43.478 | 92 | 52 | 0 | 222 | 313 | 16 | 107 | 2.03e-17 | 77.0 |
| MS.gene74945.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 3.02e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74945.t1 | AT1G68090 | 55.205 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.07e-127 | 367 |
| MS.gene74945.t1 | AT1G68090 | 52.381 | 252 | 115 | 2 | 1 | 249 | 1 | 250 | 1.15e-91 | 273 |
| MS.gene74945.t1 | AT1G68090 | 26.291 | 213 | 136 | 5 | 108 | 311 | 37 | 237 | 3.03e-16 | 77.4 |
| MS.gene74945.t1 | AT5G10230 | 40.190 | 316 | 187 | 2 | 1 | 315 | 1 | 315 | 3.32e-79 | 244 |
| MS.gene74945.t1 | AT5G65020 | 41.270 | 315 | 180 | 4 | 1 | 312 | 1 | 313 | 9.14e-78 | 240 |
| MS.gene74945.t1 | AT5G10220 | 39.308 | 318 | 189 | 3 | 1 | 315 | 1 | 317 | 1.18e-77 | 240 |
| MS.gene74945.t1 | AT1G35720 | 38.245 | 319 | 188 | 4 | 1 | 314 | 1 | 315 | 1.69e-69 | 219 |
| MS.gene74945.t1 | AT5G12380 | 36.909 | 317 | 189 | 5 | 1 | 312 | 1 | 311 | 3.82e-67 | 213 |
| MS.gene74945.t1 | AT5G65020 | 40.000 | 290 | 169 | 4 | 26 | 312 | 11 | 298 | 6.99e-67 | 212 |
| MS.gene74945.t1 | AT2G38760 | 34.169 | 319 | 202 | 3 | 1 | 312 | 1 | 318 | 2.11e-57 | 188 |
| MS.gene74945.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 2 | 301 | 1.63e-32 | 122 |
| MS.gene74945.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 19 | 318 | 1.83e-32 | 122 |
Find 69 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCTTTCACTGAATATT+TGG | 0.107454 | 1.3:+76336970 | None:intergenic |
| TATAAGGCAATGAAAGGTTT+AGG | 0.249516 | 1.3:-76335715 | MS.gene74945:CDS |
| CAGCTATACCATTCAAAGTT+TGG | 0.285392 | 1.3:-76337661 | MS.gene74945:CDS |
| AAAACATCTTGACTAATGAT+TGG | 0.345482 | 1.3:+76335528 | None:intergenic |
| AATGAAGCTTCAGGGAATTT+CGG | 0.347354 | 1.3:-76336795 | MS.gene74945:CDS |
| ACCTTTGCAAAATACTTTCC+TGG | 0.349017 | 1.3:+76336735 | None:intergenic |
| AACCATGCAGGTATTGTATA+AGG | 0.355765 | 1.3:-76335731 | MS.gene74945:intron |
| GAAGTCAAATCAAACACTTC+GGG | 0.366848 | 1.3:-76337622 | MS.gene74945:CDS |
| TGAAAGGAGTGCCGCACATT+TGG | 0.368181 | 1.3:-76336958 | MS.gene74945:CDS |
| AAAATACTTTCCTGGATTAG+TGG | 0.371943 | 1.3:+76336743 | None:intergenic |
| GCAGTAAAGAATGAAGCTTC+AGG | 0.375034 | 1.3:-76336804 | MS.gene74945:CDS |
| ATAAGGCAATGAAAGGTTTA+GGG | 0.382653 | 1.3:-76335714 | MS.gene74945:CDS |
| AAACATCTTGACTAATGATT+GGG | 0.384346 | 1.3:+76335529 | None:intergenic |
| GGAGCTGAGTGGAAAGTTAG+AGG | 0.411832 | 1.3:-76338204 | MS.gene74945:intron |
| TTCAGACTGCTGTTCTACTT+TGG | 0.419993 | 1.3:-76337807 | MS.gene74945:intron |
| CTAATGATAACACGCTGATA+AGG | 0.423632 | 1.3:-76335690 | MS.gene74945:CDS |
| ATGTTGTTCGATATTCTTGT+TGG | 0.429076 | 1.3:+76338258 | None:intergenic |
| TCTTATTATCATGACATGTA+TGG | 0.429350 | 1.3:-76336924 | MS.gene74945:CDS |
| GCTTTCGAAACGCTTGGTTT+CGG | 0.430820 | 1.3:-76338225 | MS.gene74945:CDS |
| TTACTTCGGTAGCAGCTTCA+AGG | 0.438270 | 1.3:+76337722 | None:intergenic |
| GCAATTTCTCTATTAACCTC+AGG | 0.450053 | 1.3:+76337062 | None:intergenic |
| CCTCAGGGCCTTCGTGGCGA+GGG | 0.459091 | 1.3:+76337078 | None:intergenic |
| GATAAACTCCAAACTTTGAA+TGG | 0.459814 | 1.3:+76337653 | None:intergenic |
| TAATGATAACACGCTGATAA+GGG | 0.464492 | 1.3:-76335689 | MS.gene74945:CDS |
| ACCTCAGGGCCTTCGTGGCG+AGG | 0.470530 | 1.3:+76337077 | None:intergenic |
| GCAGTTCACTCTGAAACATC+TGG | 0.476823 | 1.3:-76335586 | MS.gene74945:CDS |
| GACGTGATGTGGAAATCATC+AGG | 0.480749 | 1.3:-76337768 | MS.gene74945:CDS |
| ATTTCCACATCACGTCCTGC+AGG | 0.480920 | 1.3:+76337775 | None:intergenic |
| ATCCAATGTGCCACTAATCC+AGG | 0.481177 | 1.3:-76336753 | MS.gene74945:CDS |
| ACATCACGTCCTGCAGGGTC+AGG | 0.483921 | 1.3:+76337781 | None:intergenic |
| TTTAGATATTGTAGTTGGGA+TGG | 0.486564 | 1.3:+76337685 | None:intergenic |
| TCGATATTCTTGTTGGATGT+AGG | 0.488103 | 1.3:+76338265 | None:intergenic |
| TAATAGAGAAATTGCTGAGA+AGG | 0.492113 | 1.3:-76337054 | MS.gene74945:CDS |
| CAACTTTACCGTGCTTTCAA+AGG | 0.494780 | 1.3:-76339217 | MS.gene74945:intron |
| TTGTCCAAATATTCAGTGAA+AGG | 0.504472 | 1.3:-76336974 | MS.gene74945:CDS |
| CAGTAAAGAATGAAGCTTCA+GGG | 0.507933 | 1.3:-76336803 | MS.gene74945:CDS |
| CTTTGGATGCCTGACCCTGC+AGG | 0.523684 | 1.3:-76337790 | MS.gene74945:CDS |
| AGAGGAGCTTTCGAAACGCT+TGG | 0.524295 | 1.3:-76338231 | MS.gene74945:CDS |
| TGAAGTCAAATCAAACACTT+CGG | 0.531066 | 1.3:-76337623 | MS.gene74945:CDS |
| TATTAACCTCAGGGCCTTCG+TGG | 0.534153 | 1.3:+76337072 | None:intergenic |
| CTGAAACATCTGGCAACTAC+AGG | 0.542743 | 1.3:-76335576 | MS.gene74945:CDS |
| AGTTGCATCGCATCATCTCT+AGG | 0.551159 | 1.3:+76339235 | None:intergenic |
| CGCATCATCTCTAGGAGAAG+GGG | 0.552806 | 1.3:+76339243 | None:intergenic |
| TCGCATCATCTCTAGGAGAA+GGG | 0.556950 | 1.3:+76339242 | None:intergenic |
| TTCCTGGATTAGTGGCACAT+TGG | 0.563028 | 1.3:+76336751 | None:intergenic |
| CATCAGGAAGTCTCTAGTTG+TGG | 0.566789 | 1.3:-76337752 | MS.gene74945:CDS |
| ATCGCATCATCTCTAGGAGA+AGG | 0.567055 | 1.3:+76339241 | None:intergenic |
| GCAAAGGTTCTCTACAAAGC+GGG | 0.570145 | 1.3:-76337029 | MS.gene74945:CDS |
| CTCAGGGCCTTCGTGGCGAG+GGG | 0.572201 | 1.3:+76337079 | None:intergenic |
| GTAGAAGAAGATGGCTACAC+TGG | 0.572744 | 1.3:-76339281 | None:intergenic |
| TGCAAAGGTTCTCTACAAAG+CGG | 0.594581 | 1.3:-76337030 | MS.gene74945:CDS |
| CAATTTCTCTATTAACCTCA+GGG | 0.596064 | 1.3:+76337063 | None:intergenic |
| GTATGGTCACTCATTGAAGA+AGG | 0.597830 | 1.3:-76336907 | MS.gene74945:intron |
| AGAGGGTACCTTTGAAAGCA+CGG | 0.601480 | 1.3:+76339209 | None:intergenic |
| TGACCCTGCAGGACGTGATG+TGG | 0.603910 | 1.3:-76337779 | MS.gene74945:CDS |
| GTATTGTATAAGGCAATGAA+AGG | 0.612404 | 1.3:-76335721 | MS.gene74945:CDS |
| AATTGCTGAGAAGGATGCAA+AGG | 0.621549 | 1.3:-76337045 | MS.gene74945:CDS |
| CCCTCGCCACGAAGGCCCTG+AGG | 0.636025 | 1.3:-76337078 | MS.gene74945:CDS |
| AAGTCAAATCAAACACTTCG+GGG | 0.641575 | 1.3:-76337621 | MS.gene74945:CDS |
| TTTCCACATCACGTCCTGCA+GGG | 0.641940 | 1.3:+76337776 | None:intergenic |
| CGCTTGGTTTCGGAGCTGAG+TGG | 0.675769 | 1.3:-76338215 | MS.gene74945:CDS |
| ACTGACTGCAGCCAAATGTG+CGG | 0.677644 | 1.3:+76336947 | None:intergenic |
| AGTGCGTGAACAGATTACTT+CGG | 0.681370 | 1.3:+76337708 | None:intergenic |
| TGATAAGGGTAATTGTAACA+AGG | 0.683491 | 1.3:-76335675 | MS.gene74945:CDS |
| GCATCATCTCTAGGAGAAGG+GGG | 0.685619 | 1.3:+76339244 | None:intergenic |
| AAAGCGGGTGAAAAGAAACT+CGG | 0.691984 | 1.3:-76337014 | MS.gene74945:CDS |
| AGTCAAATCAAACACTTCGG+GGG | 0.699436 | 1.3:-76337620 | MS.gene74945:CDS |
| GTAAGTACCCCTCGCCACGA+AGG | 0.701381 | 1.3:-76337086 | MS.gene74945:CDS |
| ATATCGAACAACATACTCAG+AGG | 0.713202 | 1.3:-76338249 | MS.gene74945:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATAAATAGTGTTT+AGG | - | chr1.3:76338274-76338293 | MS.gene74945:CDS | 10.0% |
| !!! | ATTCAATTTTATAAATGATT+TGG | + | chr1.3:76336105-76336124 | None:intergenic | 10.0% |
| !!! | TTCAATTTTATAAATGATTT+GGG | + | chr1.3:76336104-76336123 | None:intergenic | 10.0% |
| !! | ATAGAATTAGAATGAAATAA+AGG | + | chr1.3:76336453-76336472 | None:intergenic | 15.0% |
| !! | TCTTTATACAAAGAATATTT+CGG | + | chr1.3:76336390-76336409 | None:intergenic | 15.0% |
| !! | TTTATTTCATTCTAATTCTA+TGG | - | chr1.3:76336452-76336471 | MS.gene74945:intron | 15.0% |
| !!! | AATTCATTAAAATTTTGTGT+GGG | - | chr1.3:76338703-76338722 | MS.gene74945:intron | 15.0% |
| !!! | ACACAAAATTTTAATGAATT+AGG | + | chr1.3:76338703-76338722 | None:intergenic | 15.0% |
| !!! | ATTTAAATTTGTGTAACTTT+TGG | - | chr1.3:76338768-76338787 | MS.gene74945:intron | 15.0% |
| !!! | TAATTCATTAAAATTTTGTG+TGG | - | chr1.3:76338702-76338721 | MS.gene74945:intron | 15.0% |
| !! | AAATAACAGAAATTTAGAGA+TGG | - | chr1.3:76337358-76337377 | MS.gene74945:intron | 20.0% |
| !! | AGAGATGGAAAAAATAAAAT+TGG | + | chr1.3:76337432-76337451 | None:intergenic | 20.0% |
| !! | GGAAAATTAAGACATTTAAA+AGG | + | chr1.3:76339028-76339047 | None:intergenic | 20.0% |
| !! | TATAATCAGAAGAATATGAT+AGG | + | chr1.3:76337305-76337324 | None:intergenic | 20.0% |
| !! | TTAGATGAAAAATACTAATG+TGG | + | chr1.3:76336313-76336332 | None:intergenic | 20.0% |
| !! | TTCTAGATTCAAAATGTTAA+AGG | - | chr1.3:76337515-76337534 | MS.gene74945:intron | 20.0% |
| !! | TTGTCAAACTTAATATTACA+AGG | - | chr1.3:76336018-76336037 | MS.gene74945:intron | 20.0% |
| !!! | AAACAAGTTTTTTGCATAAA+TGG | + | chr1.3:76337688-76337707 | None:intergenic | 20.0% |
| !!! | AATATACAAATTTTGTGCAT+AGG | + | chr1.3:76339049-76339068 | None:intergenic | 20.0% |
| !!! | TAAACTAAGAGCTTTTTAAT+TGG | + | chr1.3:76338454-76338473 | None:intergenic | 20.0% |
| !!! | TTCAACTTTTTCTGATAATA+AGG | - | chr1.3:76337467-76337486 | MS.gene74945:intron | 20.0% |
| ! | AATGAGTTAGCTAATACATT+TGG | + | chr1.3:76338751-76338770 | None:intergenic | 25.0% |
| ! | AGAATGAAATAAAGGTTTCA+TGG | + | chr1.3:76336445-76336464 | None:intergenic | 25.0% |
| ! | ATAACAACAGAAATTAGAGA+TGG | + | chr1.3:76337447-76337466 | None:intergenic | 25.0% |
| ! | ATGACAAATTAGTCACATTA+TGG | - | chr1.3:76337274-76337293 | MS.gene74945:intron | 25.0% |
| ! | CATTATCATGAAAGCAATAA+AGG | + | chr1.3:76337607-76337626 | None:intergenic | 25.0% |
| ! | CTAATTTCATTCCACAAAAT+CGG | - | chr1.3:76335759-76335778 | MS.gene74945:intron | 25.0% |
| ! | CTACTACTACTACAATATTT+AGG | + | chr1.3:76335884-76335903 | None:intergenic | 25.0% |
| ! | CTCTTATTAGAAATAAGAGA+AGG | + | chr1.3:76338639-76338658 | None:intergenic | 25.0% |
| ! | GAAATAAGAGAAGGATAAAA+AGG | + | chr1.3:76338630-76338649 | None:intergenic | 25.0% |
| ! | GACTGAAAATTGCATTAATT+TGG | - | chr1.3:76336155-76336174 | MS.gene74945:intron | 25.0% |
| ! | GTATAAAGAGATTACTTGTA+AGG | - | chr1.3:76336401-76336420 | MS.gene74945:intron | 25.0% |
| ! | GTCTCAAGTTTATAAAACAA+AGG | - | chr1.3:76337639-76337658 | MS.gene74945:CDS | 25.0% |
| ! | GTTATTGAACACAAAAATTG+TGG | + | chr1.3:76338157-76338176 | None:intergenic | 25.0% |
| ! | TAAAGTGATTTAGTAGTTTG+AGG | - | chr1.3:76338346-76338365 | MS.gene74945:intron | 25.0% |
| ! | TCTTATTATCATGACATGTA+TGG | - | chr1.3:76337887-76337906 | MS.gene74945:intron | 25.0% |
| ! | TTAAATCATAGACAGTTCAT+AGG | - | chr1.3:76337542-76337561 | MS.gene74945:intron | 25.0% |
| ! | TTGTATCAATGTTTCATACT+TGG | - | chr1.3:76338984-76339003 | MS.gene74945:intron | 25.0% |
| !! | AAAAAGTGTACTTCAATATG+TGG | - | chr1.3:76336345-76336364 | MS.gene74945:intron | 25.0% |
| !! | AGAGAGTACGTAATATAAAA+AGG | + | chr1.3:76335722-76335741 | None:intergenic | 25.0% |
| !! | TCAACTTTTTATAGTAGTGT+CGG | + | chr1.3:76337339-76337358 | None:intergenic | 25.0% |
| !!! | CTATTTATAGACTCACTTTT+AGG | + | chr1.3:76335816-76335835 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | + | chr1.3:76337133-76337152 | None:intergenic | 25.0% |
| !!! | CTTCTCTTATTTCTAATAAG+AGG | - | chr1.3:76338637-76338656 | MS.gene74945:intron | 25.0% |
| AAAAAGGAGACATTCTTACA+TGG | + | chr1.3:76338423-76338442 | None:intergenic | 30.0% | |
| AAGACATTTAAAAGGTTCTC+TGG | + | chr1.3:76339020-76339039 | None:intergenic | 30.0% | |
| AATCAGAAGAATATGATAGG+AGG | + | chr1.3:76337302-76337321 | None:intergenic | 30.0% | |
| AATTTGTCATGTGATGACTA+AGG | + | chr1.3:76337264-76337283 | None:intergenic | 30.0% | |
| ATAAGGCAATGAAAGGTTTA+GGG | - | chr1.3:76339097-76339116 | MS.gene74945:intron | 30.0% | |
| ATACCGTATACGTTGAATAA+TGG | + | chr1.3:76336071-76336090 | None:intergenic | 30.0% | |
| ATCCATTTATAGATGTGAGA+AGG | + | chr1.3:76335956-76335975 | None:intergenic | 30.0% | |
| ATGTTGTTCGATATTCTTGT+TGG | + | chr1.3:76336556-76336575 | None:intergenic | 30.0% | |
| CAATTTCTCTATTAACCTCA+GGG | + | chr1.3:76337751-76337770 | None:intergenic | 30.0% | |
| GATAAACTCCAAACTTTGAA+TGG | + | chr1.3:76337161-76337180 | None:intergenic | 30.0% | |
| GTATTGTATAAGGCAATGAA+AGG | - | chr1.3:76339090-76339109 | MS.gene74945:intron | 30.0% | |
| TAATAGAGAAATTGCTGAGA+AGG | - | chr1.3:76337757-76337776 | MS.gene74945:CDS | 30.0% | |
| TAATGATAACACGCTGATAA+GGG | - | chr1.3:76339122-76339141 | MS.gene74945:intron | 30.0% | |
| TAGCCATTATTCAACGTATA+CGG | - | chr1.3:76336065-76336084 | MS.gene74945:intron | 30.0% | |
| TAGTATACACTCAACAAACA+TGG | + | chr1.3:76338816-76338835 | None:intergenic | 30.0% | |
| TATAAGGCAATGAAAGGTTT+AGG | - | chr1.3:76339096-76339115 | MS.gene74945:intron | 30.0% | |
| TCCATTTATAGATGTGAGAA+GGG | + | chr1.3:76335955-76335974 | None:intergenic | 30.0% | |
| TGAAACATTGATACAAACAC+CGG | + | chr1.3:76338980-76338999 | None:intergenic | 30.0% | |
| TGAAGTCAAATCAAACACTT+CGG | - | chr1.3:76337188-76337207 | MS.gene74945:intron | 30.0% | |
| TGATAAGGGTAATTGTAACA+AGG | - | chr1.3:76339136-76339155 | MS.gene74945:intron | 30.0% | |
| TGTAGATTAGTACATTAGCA+TGG | - | chr1.3:76338543-76338562 | MS.gene74945:intron | 30.0% | |
| TTAATTGGAGCAAGACAAAA+AGG | + | chr1.3:76338439-76338458 | None:intergenic | 30.0% | |
| TTCTAATTCTATGGTTTCAC+AGG | - | chr1.3:76336461-76336480 | MS.gene74945:intron | 30.0% | |
| TTGTCCAAATATTCAGTGAA+AGG | - | chr1.3:76337837-76337856 | MS.gene74945:intron | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | + | chr1.3:76337129-76337148 | None:intergenic | 30.0% | |
| TTTCAAGCTGAAATCATATC+AGG | - | chr1.3:76337985-76338004 | MS.gene74945:intron | 30.0% | |
| TTTGTCGGAAAATTCTACTA+TGG | - | chr1.3:76338246-76338265 | MS.gene74945:CDS | 30.0% | |
| ! | AAAATACTTTCCTGGATTAG+TGG | + | chr1.3:76338071-76338090 | None:intergenic | 30.0% |
| ! | AAACCAGATTGTCTTTTTGT+CGG | - | chr1.3:76338231-76338250 | MS.gene74945:CDS | 30.0% |
| ! | ATTTGTGTAACTTTTGGTCA+AGG | - | chr1.3:76338774-76338793 | MS.gene74945:intron | 30.0% |
| ! | CGATTTTGTGGAATGAAATT+AGG | + | chr1.3:76335761-76335780 | None:intergenic | 30.0% |
| !! | ACAAAAAGACAATCTGGTTT+TGG | + | chr1.3:76338231-76338250 | None:intergenic | 30.0% |
| !! | GCTGTTTTAGATATTGTAGT+TGG | + | chr1.3:76337134-76337153 | None:intergenic | 30.0% |
| !!! | ATAGATCTGCATTTTTTGTG+AGG | - | chr1.3:76336205-76336224 | MS.gene74945:intron | 30.0% |
| AAAACTTGATCTGCTCTGTA+TGG | + | chr1.3:76336893-76336912 | None:intergenic | 35.0% | |
| AAGAATGAGCTTTCGAACTT+TGG | - | chr1.3:76336245-76336264 | MS.gene74945:intron | 35.0% | |
| AAGTCAAATCAAACACTTCG+GGG | - | chr1.3:76337190-76337209 | MS.gene74945:intron | 35.0% | |
| AATGAAGCTTCAGGGAATTT+CGG | - | chr1.3:76338016-76338035 | MS.gene74945:intron | 35.0% | |
| AATTCGAATATCAAACCACC+AGG | + | chr1.3:76335993-76336012 | None:intergenic | 35.0% | |
| ACACTCAACAAACATGGTAA+TGG | + | chr1.3:76338810-76338829 | None:intergenic | 35.0% | |
| ACCCTTCTCACATCTATAAA+TGG | - | chr1.3:76335951-76335970 | MS.gene74945:intron | 35.0% | |
| ACCTTTGCAAAATACTTTCC+TGG | + | chr1.3:76338079-76338098 | None:intergenic | 35.0% | |
| AGAGAGATAGATAGAGAAAG+AGG | + | chr1.3:76335623-76335642 | None:intergenic | 35.0% | |
| AGGCAGGAAATTGTTATGAA+AGG | - | chr1.3:76338195-76338214 | MS.gene74945:intron | 35.0% | |
| ATAATGGCTAAAAGTGAGTG+AGG | + | chr1.3:76336055-76336074 | None:intergenic | 35.0% | |
| ATATCGAACAACATACTCAG+AGG | - | chr1.3:76336562-76336581 | MS.gene74945:intron | 35.0% | |
| ATTCGAATATCAAACCACCA+GGG | + | chr1.3:76335992-76336011 | None:intergenic | 35.0% | |
| ATTTATAGATGTGAGAAGGG+TGG | + | chr1.3:76335952-76335971 | None:intergenic | 35.0% | |
| CAACCCTAAAAAAAGTCACA+AGG | + | chr1.3:76335677-76335696 | None:intergenic | 35.0% | |
| CACTCCTTTCACTGAATATT+TGG | + | chr1.3:76337844-76337863 | None:intergenic | 35.0% | |
| CAGCTATACCATTCAAAGTT+TGG | - | chr1.3:76337150-76337169 | MS.gene74945:intron | 35.0% | |
| CAGTAAAGAATGAAGCTTCA+GGG | - | chr1.3:76338008-76338027 | MS.gene74945:intron | 35.0% | |
| CTAATGATAACACGCTGATA+AGG | - | chr1.3:76339121-76339140 | MS.gene74945:intron | 35.0% | |
| GAAGTCAAATCAAACACTTC+GGG | - | chr1.3:76337189-76337208 | MS.gene74945:intron | 35.0% | |
| GAGAGATAGATAGAGAAAGA+GGG | + | chr1.3:76335622-76335641 | None:intergenic | 35.0% | |
| GCAATTTCTCTATTAACCTC+AGG | + | chr1.3:76337752-76337771 | None:intergenic | 35.0% | |
| GGCAGGAAATTGTTATGAAA+GGG | - | chr1.3:76338196-76338215 | MS.gene74945:intron | 35.0% | |
| TAATGGCTAAAAGTGAGTGA+GGG | + | chr1.3:76336054-76336073 | None:intergenic | 35.0% | |
| TAGGCTCATTGAGTTTGATA+AGG | - | chr1.3:76335790-76335809 | MS.gene74945:intron | 35.0% | |
| TCGATATTCTTGTTGGATGT+AGG | + | chr1.3:76336549-76336568 | None:intergenic | 35.0% | |
| TGCAAAAGTTGAAGTGAAGA+TGG | + | chr1.3:76338104-76338123 | None:intergenic | 35.0% | |
| TGTATGGTCTTTCATTGCAA+GGG | + | chr1.3:76336877-76336896 | None:intergenic | 35.0% | |
| TTCTATGGTTTCACAGGATT+TGG | - | chr1.3:76336467-76336486 | MS.gene74945:intron | 35.0% | |
| TTTCCGACAAAAAGACAATC+TGG | + | chr1.3:76338237-76338256 | None:intergenic | 35.0% | |
| ! | AACCATGCAGGTATTGTATA+AGG | - | chr1.3:76339080-76339099 | MS.gene74945:intron | 35.0% |
| ! | ACTTTTCTTCTCGCACTTTT+GGG | - | chr1.3:76339258-76339277 | MS.gene74945:CDS | 35.0% |
| ! | AGTTCATAGGTTTTCCTCAT+AGG | - | chr1.3:76337555-76337574 | MS.gene74945:intron | 35.0% |
| ! | CAATATGTGGTTCTATTCCA+GGG | - | chr1.3:76336358-76336377 | MS.gene74945:intron | 35.0% |
| ! | CACAAAATCGGCTTATTGTT+AGG | - | chr1.3:76335771-76335790 | MS.gene74945:intron | 35.0% |
| ! | CACACCATAAGAGTTGATTT+CGG | - | chr1.3:76335853-76335872 | MS.gene74945:intron | 35.0% |
| ! | GATTAAAAGCATGCAAACCT+TGG | + | chr1.3:76335646-76335665 | None:intergenic | 35.0% |
| ! | TCAATATGTGGTTCTATTCC+AGG | - | chr1.3:76336357-76336376 | MS.gene74945:intron | 35.0% |
| ! | TGCATGCTTTTAATCATGCA+TGG | - | chr1.3:76335651-76335670 | MS.gene74945:CDS | 35.0% |
| !! | CTAACAATAAGCCGATTTTG+TGG | + | chr1.3:76335773-76335792 | None:intergenic | 35.0% |
| !! | CTTTTTATAGTAGTGTCGGA+TGG | + | chr1.3:76337335-76337354 | None:intergenic | 35.0% |
| !!! | ATGGCCTTGTGACTTTTTTT+AGG | - | chr1.3:76335670-76335689 | MS.gene74945:CDS | 35.0% |
| !!! | CATTTTTTGTGAGGAACAAG+AGG | - | chr1.3:76336214-76336233 | MS.gene74945:intron | 35.0% |
| !!! | TCCAGGAAAGTATTTTGCAA+AGG | - | chr1.3:76338075-76338094 | MS.gene74945:intron | 35.0% |
| !!! | TGGCCTTGTGACTTTTTTTA+GGG | - | chr1.3:76335671-76335690 | MS.gene74945:CDS | 35.0% |
| !!! | TGTGACTTTTTTTAGGGTTG+TGG | - | chr1.3:76335677-76335696 | MS.gene74945:CDS | 35.0% |
| AAAGCGGGTGAAAAGAAACT+CGG | - | chr1.3:76337797-76337816 | MS.gene74945:CDS | 40.0% | |
| AATGGCTAAAAGTGAGTGAG+GGG | + | chr1.3:76336053-76336072 | None:intergenic | 40.0% | |
| AATTGCTGAGAAGGATGCAA+AGG | - | chr1.3:76337766-76337785 | MS.gene74945:CDS | 40.0% | |
| AGTCAAATCAAACACTTCGG+GGG | - | chr1.3:76337191-76337210 | MS.gene74945:intron | 40.0% | |
| AGTGCGTGAACAGATTACTT+CGG | + | chr1.3:76337106-76337125 | None:intergenic | 40.0% | |
| ATTGCAAGGGTTGGATTGAT+TGG | + | chr1.3:76336864-76336883 | None:intergenic | 40.0% | |
| CAACTTTACCGTGCTTTCAA+AGG | - | chr1.3:76335594-76335613 | MS.gene74945:CDS | 40.0% | |
| CAATACCTGCATGGTTACAA+AGG | + | chr1.3:76339076-76339095 | None:intergenic | 40.0% | |
| CTGTATGGTCTTTCATTGCA+AGG | + | chr1.3:76336878-76336897 | None:intergenic | 40.0% | |
| GAATATTTCGGATAATGCCC+TGG | + | chr1.3:76336378-76336397 | None:intergenic | 40.0% | |
| GCAGTAAAGAATGAAGCTTC+AGG | - | chr1.3:76338007-76338026 | MS.gene74945:intron | 40.0% | |
| GTATGGTCACTCATTGAAGA+AGG | - | chr1.3:76337904-76337923 | MS.gene74945:intron | 40.0% | |
| GTGGGCAATTTGTAAGAGTA+GGG | - | chr1.3:76338721-76338740 | MS.gene74945:intron | 40.0% | |
| TAACGATGTATACGTGTGAG+TGG | - | chr1.3:76338946-76338965 | MS.gene74945:intron | 40.0% | |
| TCTCTATCTATCTCTCTCCA+AGG | - | chr1.3:76335626-76335645 | MS.gene74945:CDS | 40.0% | |
| TGAGCCGAAATCAACTCTTA+TGG | + | chr1.3:76335860-76335879 | None:intergenic | 40.0% | |
| TGCAAAGGTTCTCTACAAAG+CGG | - | chr1.3:76337781-76337800 | MS.gene74945:CDS | 40.0% | |
| TGCCTTATACAATACCTGCA+TGG | + | chr1.3:76339085-76339104 | None:intergenic | 40.0% | |
| TGTGGGCAATTTGTAAGAGT+AGG | - | chr1.3:76338720-76338739 | MS.gene74945:intron | 40.0% | |
| TTCAGACTGCTGTTCTACTT+TGG | - | chr1.3:76337004-76337023 | MS.gene74945:CDS | 40.0% | |
| TTGTGAGGAACAAGAGGAAA+TGG | - | chr1.3:76336220-76336239 | MS.gene74945:intron | 40.0% | |
| ! | CAAAGTTTTCGCATCCTATG+AGG | + | chr1.3:76337572-76337591 | None:intergenic | 40.0% |
| ! | GACTTTTCTTCTCGCACTTT+TGG | - | chr1.3:76339257-76339276 | MS.gene74945:CDS | 40.0% |
| ! | TGTGTAACTTTTGGTCAAGG+TGG | - | chr1.3:76338777-76338796 | MS.gene74945:intron | 40.0% |
| AACCCTATCCACGATCTGTT+TGG | - | chr1.3:76335912-76335931 | MS.gene74945:intron | 45.0% | |
| AATCCGCCTCTAAGTAGTAG+AGG | - | chr1.3:76337402-76337421 | MS.gene74945:intron | 45.0% | |
| AGCAATGACCAAACAGATCG+TGG | + | chr1.3:76335923-76335942 | None:intergenic | 45.0% | |
| AGTTGCATCGCATCATCTCT+AGG | + | chr1.3:76335579-76335598 | None:intergenic | 45.0% | |
| ATCCGCCTCTAAGTAGTAGA+GGG | - | chr1.3:76337403-76337422 | MS.gene74945:intron | 45.0% | |
| CATCAGGAAGTCTCTAGTTG+TGG | - | chr1.3:76337059-76337078 | MS.gene74945:CDS | 45.0% | |
| CTGAAACATCTGGCAACTAC+AGG | - | chr1.3:76339235-76339254 | MS.gene74945:CDS | 45.0% | |
| GACCAAACAGATCGTGGATA+GGG | + | chr1.3:76335917-76335936 | None:intergenic | 45.0% | |
| GACGTGATGTGGAAATCATC+AGG | - | chr1.3:76337043-76337062 | MS.gene74945:CDS | 45.0% | |
| GCAAAGGTTCTCTACAAAGC+GGG | - | chr1.3:76337782-76337801 | MS.gene74945:CDS | 45.0% | |
| GCTTTCGAAACGCTTGGTTT+CGG | - | chr1.3:76336586-76336605 | MS.gene74945:intron | 45.0% | |
| TCACACCTTTGTAACCATGC+AGG | - | chr1.3:76339068-76339087 | MS.gene74945:intron | 45.0% | |
| TCTGTTTGGTCATTGCTACC+AGG | - | chr1.3:76335926-76335945 | MS.gene74945:intron | 45.0% | |
| TGACCAAACAGATCGTGGAT+AGG | + | chr1.3:76335918-76335937 | None:intergenic | 45.0% | |
| TGGTCTTTCATTGCAAGGGT+TGG | + | chr1.3:76336873-76336892 | None:intergenic | 45.0% | |
| TTACTTCGGTAGCAGCTTCA+AGG | + | chr1.3:76337092-76337111 | None:intergenic | 45.0% | |
| ! | ACAGTGTGCTTGTGTTTTCG+AGG | - | chr1.3:76338175-76338194 | MS.gene74945:intron | 45.0% |
| ! | ATCCAATGTGCCACTAATCC+AGG | - | chr1.3:76338058-76338077 | MS.gene74945:intron | 45.0% |
| ! | ATCGCATCATCTCTAGGAGA+AGG | + | chr1.3:76335573-76335592 | None:intergenic | 45.0% |
| ! | TCGCATCATCTCTAGGAGAA+GGG | + | chr1.3:76335572-76335591 | None:intergenic | 45.0% |
| !! | AGAGGGTACCTTTGAAAGCA+CGG | + | chr1.3:76335605-76335624 | None:intergenic | 45.0% |
| !! | GCAGTTCACTCTGAAACATC+TGG | - | chr1.3:76339225-76339244 | MS.gene74945:CDS | 45.0% |
| !! | TTCCTGGATTAGTGGCACAT+TGG | + | chr1.3:76338063-76338082 | None:intergenic | 45.0% |
| ACTGACTGCAGCCAAATGTG+CGG | + | chr1.3:76337867-76337886 | None:intergenic | 50.0% | |
| AGAGGAGCTTTCGAAACGCT+TGG | - | chr1.3:76336580-76336599 | MS.gene74945:intron | 50.0% | |
| ATTTCCACATCACGTCCTGC+AGG | + | chr1.3:76337039-76337058 | None:intergenic | 50.0% | |
| CACCCTCTACTACTTAGAGG+CGG | + | chr1.3:76337408-76337427 | None:intergenic | 50.0% | |
| CACTTCGGGGGATCTTCAAA+AGG | - | chr1.3:76337203-76337222 | MS.gene74945:intron | 50.0% | |
| CGGGGGATCTTCAAAAGGTA+AGG | - | chr1.3:76337208-76337227 | MS.gene74945:intron | 50.0% | |
| GGAGCTGAGTGGAAAGTTAG+AGG | - | chr1.3:76336607-76336626 | MS.gene74945:intron | 50.0% | |
| GGATATATGAAGCGTGACCC+TGG | - | chr1.3:76335972-76335991 | MS.gene74945:intron | 50.0% | |
| GGTCACCCTCTACTACTTAG+AGG | + | chr1.3:76337411-76337430 | None:intergenic | 50.0% | |
| TATATGAAGCGTGACCCTGG+TGG | - | chr1.3:76335975-76335994 | MS.gene74945:intron | 50.0% | |
| TATTAACCTCAGGGCCTTCG+TGG | + | chr1.3:76337742-76337761 | None:intergenic | 50.0% | |
| TTTCCACATCACGTCCTGCA+GGG | + | chr1.3:76337038-76337057 | None:intergenic | 50.0% | |
| ! | CGCATCATCTCTAGGAGAAG+GGG | + | chr1.3:76335571-76335590 | None:intergenic | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+GGG | + | chr1.3:76335570-76335589 | None:intergenic | 50.0% |
| ! | TCTCTAGGAGAAGGGGGAAA+TGG | + | chr1.3:76335564-76335583 | None:intergenic | 50.0% |
| !! | CGTGTGAGTGGAGTTTTGTC+CGG | - | chr1.3:76338958-76338977 | MS.gene74945:intron | 50.0% |
| !! | TGAAAGGAGTGCCGCACATT+TGG | - | chr1.3:76337853-76337872 | MS.gene74945:intron | 50.0% |
| !! | TGTGCTTGTGTTTTCGAGGC+AGG | - | chr1.3:76338179-76338198 | MS.gene74945:intron | 50.0% |
| CTAGGAGAAGGGGGAAATGG+AGG | + | chr1.3:76335561-76335580 | None:intergenic | 55.0% | |
| GACGAGTGCGATGTCTGACA+CGG | - | chr1.3:76338881-76338900 | MS.gene74945:intron | 55.0% | |
| GATGTCTGACACGGAAGACG+TGG | - | chr1.3:76338890-76338909 | MS.gene74945:intron | 55.0% | |
| GTGTCAGACATCGCACTCGT+CGG | + | chr1.3:76338882-76338901 | None:intergenic | 55.0% | |
| TAGATGTGAGAAGGGTGGCC+TGG | + | chr1.3:76335947-76335966 | None:intergenic | 55.0% | |
| ACATCACGTCCTGCAGGGTC+AGG | + | chr1.3:76337033-76337052 | None:intergenic | 60.0% | |
| CGCTTGGTTTCGGAGCTGAG+TGG | - | chr1.3:76336596-76336615 | MS.gene74945:intron | 60.0% | |
| CTTTGGATGCCTGACCCTGC+AGG | - | chr1.3:76337021-76337040 | MS.gene74945:CDS | 60.0% | |
| GTAAGTACCCCTCGCCACGA+AGG | - | chr1.3:76337725-76337744 | MS.gene74945:CDS | 60.0% | |
| TGACCCTGCAGGACGTGATG+TGG | - | chr1.3:76337032-76337051 | MS.gene74945:CDS | 60.0% | |
| ACCTCAGGGCCTTCGTGGCG+AGG | + | chr1.3:76337737-76337756 | None:intergenic | 70.0% | |
| CCTCAGGGCCTTCGTGGCGA+GGG | + | chr1.3:76337736-76337755 | None:intergenic | 70.0% | |
| CTCAGGGCCTTCGTGGCGAG+GGG | + | chr1.3:76337735-76337754 | None:intergenic | 70.0% | |
| CCCTCGCCACGAAGGCCCTG+AGG | - | chr1.3:76337733-76337752 | MS.gene74945:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76335540 | 76339293 | 76335540 | ID=MS.gene74945 |
| chr1.3 | mRNA | 76335540 | 76339293 | 76335540 | ID=MS.gene74945.t1;Parent=MS.gene74945 |
| chr1.3 | exon | 76339218 | 76339293 | 76339218 | ID=MS.gene74945.t1.exon1;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76339218 | 76339293 | 76339218 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| chr1.3 | exon | 76338205 | 76338350 | 76338205 | ID=MS.gene74945.t1.exon2;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76338205 | 76338350 | 76338205 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| chr1.3 | exon | 76337609 | 76337824 | 76337609 | ID=MS.gene74945.t1.exon3;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76337609 | 76337824 | 76337609 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| chr1.3 | exon | 76336908 | 76337123 | 76336908 | ID=MS.gene74945.t1.exon4;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76336908 | 76337123 | 76336908 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| chr1.3 | exon | 76336737 | 76336826 | 76336737 | ID=MS.gene74945.t1.exon5;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76336737 | 76336826 | 76336737 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| chr1.3 | exon | 76335540 | 76335743 | 76335540 | ID=MS.gene74945.t1.exon6;Parent=MS.gene74945.t1 |
| chr1.3 | CDS | 76335540 | 76335743 | 76335540 | ID=cds.MS.gene74945.t1;Parent=MS.gene74945.t1 |
| Gene Sequence |
| Protein sequence |
