Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75325.t1 | XP_013458000.1 | 94.2 | 325 | 19 | 0 | 3 | 327 | 67 | 391 | 2.90E-178 | 634.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75325.t1 | Q9C907 | 75.0 | 324 | 81 | 0 | 3 | 326 | 66 | 389 | 4.7e-145 | 515.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75325.t1 | A0A072URQ0 | 94.2 | 325 | 19 | 0 | 3 | 327 | 67 | 391 | 2.1e-178 | 634.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049488 | MS.gene75325 | 0.810402 | 1.17E-50 | -1.69E-46 |
| MS.gene049993 | MS.gene75325 | 0.846624 | 1.93E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene75325 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene75325 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene75325 | 0.853695 | 2.02E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene75325 | 0.821619 | 3.67E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene75325 | -0.852414 | 4.69E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene75325 | 0.840211 | 9.97E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene75325 | 0.811228 | 7.78E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene75325 | 0.821303 | 4.34E-53 | -1.69E-46 |
| MS.gene053873 | MS.gene75325 | 0.830826 | 2.36E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene75325 | 0.832131 | 1.13E-55 | -1.69E-46 |
| MS.gene054107 | MS.gene75325 | 0.80759 | 4.69E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene75325 | 0.83392 | 4.04E-56 | -1.69E-46 |
| MS.gene054719 | MS.gene75325 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene75325 | 0.803173 | 3.96E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene75325 | 0.82323 | 1.55E-53 | -1.69E-46 |
| MS.gene054920 | MS.gene75325 | 0.805734 | 1.16E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene75325 | 0.817306 | 3.53E-52 | -1.69E-46 |
| MS.gene05594 | MS.gene75325 | 0.843714 | 1.18E-58 | -1.69E-46 |
| MS.gene056337 | MS.gene75325 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene056514 | MS.gene75325 | 0.842201 | 2.99E-58 | -1.69E-46 |
| MS.gene056782 | MS.gene75325 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene75325 | 0.805658 | 1.20E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene75325 | 0.84607 | 2.74E-59 | -1.69E-46 |
| MS.gene057749 | MS.gene75325 | 0.823534 | 1.32E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene75325 | 0.831257 | 1.85E-55 | -1.69E-46 |
| MS.gene057825 | MS.gene75325 | 0.816347 | 5.80E-52 | -1.69E-46 |
| MS.gene057841 | MS.gene75325 | 0.813305 | 2.74E-51 | -1.69E-46 |
| MS.gene057888 | MS.gene75325 | 0.853798 | 1.88E-61 | -1.69E-46 |
| MS.gene058444 | MS.gene75325 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene75325 | 0.808175 | 3.52E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene75325 | 0.855814 | 4.90E-62 | -1.69E-46 |
| MS.gene058885 | MS.gene75325 | 0.809058 | 2.28E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene75325 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene75325 | 0.844541 | 7.09E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene75325 | 0.817715 | 2.86E-52 | -1.69E-46 |
| MS.gene060485 | MS.gene75325 | 0.82081 | 5.63E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene75325 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene061214 | MS.gene75325 | 0.816346 | 5.80E-52 | -1.69E-46 |
| MS.gene061215 | MS.gene75325 | 0.81575 | 7.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75325.t1 | MTR_4g109600 | 94.154 | 325 | 19 | 0 | 3 | 327 | 67 | 391 | 0.0 | 634 |
| MS.gene75325.t1 | MTR_4g109600 | 53.903 | 269 | 96 | 6 | 64 | 327 | 73 | 318 | 1.49e-86 | 263 |
| MS.gene75325.t1 | MTR_4g109600 | 92.063 | 126 | 10 | 0 | 3 | 128 | 67 | 192 | 5.62e-77 | 238 |
| MS.gene75325.t1 | MTR_2g450160 | 26.129 | 310 | 183 | 13 | 2 | 298 | 534 | 810 | 1.54e-14 | 75.1 |
| MS.gene75325.t1 | MTR_2g450160 | 27.660 | 282 | 176 | 12 | 19 | 297 | 240 | 496 | 8.09e-13 | 69.7 |
| MS.gene75325.t1 | MTR_5g094230 | 22.654 | 309 | 200 | 8 | 3 | 300 | 377 | 657 | 2.49e-13 | 71.2 |
| MS.gene75325.t1 | MTR_5g094230 | 22.654 | 309 | 200 | 8 | 3 | 300 | 377 | 657 | 4.39e-13 | 70.5 |
| MS.gene75325.t1 | MTR_3g055610 | 25.704 | 284 | 180 | 11 | 15 | 291 | 72 | 331 | 9.44e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75325.t1 | AT1G74210 | 75.000 | 324 | 81 | 0 | 3 | 326 | 66 | 389 | 0.0 | 515 |
| MS.gene75325.t1 | AT5G08030 | 77.049 | 305 | 70 | 0 | 3 | 307 | 66 | 370 | 5.35e-178 | 497 |
| MS.gene75325.t1 | AT5G08030 | 77.483 | 302 | 68 | 0 | 3 | 304 | 81 | 382 | 1.94e-177 | 496 |
| MS.gene75325.t1 | AT1G66970 | 23.232 | 297 | 198 | 7 | 2 | 291 | 387 | 660 | 2.94e-14 | 73.9 |
| MS.gene75325.t1 | AT1G66970 | 23.232 | 297 | 198 | 7 | 2 | 291 | 409 | 682 | 3.44e-14 | 73.9 |
| MS.gene75325.t1 | AT5G58050 | 27.698 | 278 | 169 | 10 | 19 | 291 | 81 | 331 | 3.48e-14 | 73.9 |
| MS.gene75325.t1 | AT5G58050 | 24.671 | 304 | 188 | 11 | 2 | 294 | 376 | 649 | 6.64e-12 | 67.0 |
| MS.gene75325.t1 | AT1G66970 | 22.635 | 296 | 201 | 6 | 2 | 291 | 193 | 466 | 5.80e-14 | 72.8 |
| MS.gene75325.t1 | AT4G26690 | 22.074 | 299 | 198 | 8 | 2 | 291 | 381 | 653 | 6.12e-13 | 70.1 |
| MS.gene75325.t1 | AT3G20520 | 20.455 | 308 | 217 | 7 | 2 | 300 | 358 | 646 | 1.02e-11 | 66.2 |
| MS.gene75325.t1 | AT5G55480 | 20.064 | 314 | 220 | 9 | 3 | 308 | 387 | 677 | 3.69e-11 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTTGATTTCACATTAA+AGG | 0.140506 | 6.3:+30567778 | MS.gene75325:intron |
| TGAATCAGAGGTTCTGCTTT+AGG | 0.244144 | 6.3:+30567819 | MS.gene75325:CDS |
| GTTGAAACACTTCGGAAATA+TGG | 0.255128 | 6.3:+30568323 | MS.gene75325:CDS |
| TGATTACTGGATCAACAAAA+TGG | 0.274727 | 6.3:+30569056 | MS.gene75325:CDS |
| AAGCAATATGTTGTAGGAAT+TGG | 0.302113 | 6.3:+30568673 | MS.gene75325:CDS |
| GAATCAGAGGTTCTGCTTTA+GGG | 0.329665 | 6.3:+30567820 | MS.gene75325:CDS |
| ACATATAAGAACACCATCTT+TGG | 0.329743 | 6.3:-30567171 | None:intergenic |
| GTCTTGTCATCTTGACGGTT+AGG | 0.375474 | 6.3:-30569141 | None:intergenic |
| TTCTCATTTCTGTACGTGTA+TGG | 0.378212 | 6.3:-30568988 | None:intergenic |
| CTTACAAGGAGTATGATTAC+TGG | 0.378731 | 6.3:+30569043 | MS.gene75325:CDS |
| ATGATTATGTGCAGTCATAT+TGG | 0.381861 | 6.3:+30568617 | MS.gene75325:intron |
| GATATAAATAACAGGTGAAA+TGG | 0.387420 | 6.3:+30568270 | MS.gene75325:intron |
| CTCCTTCGGATCTTGTTGCC+AGG | 0.391688 | 6.3:+30568743 | MS.gene75325:CDS |
| GATATATACACAAGTGAAGT+TGG | 0.401531 | 6.3:-30568410 | None:intergenic |
| TGATTATGTGCAGTCATATT+GGG | 0.403241 | 6.3:+30568618 | MS.gene75325:intron |
| ATCAACAAAATGGGAATTGA+TGG | 0.404261 | 6.3:+30569066 | MS.gene75325:CDS |
| TTCAACACAAGACACTAATC+AGG | 0.419403 | 6.3:+30568481 | MS.gene75325:CDS |
| TTGGATGCACCCAGAGTTGT+TGG | 0.424638 | 6.3:+30568054 | MS.gene75325:CDS |
| TCTTGTCATCTTGACGGTTA+GGG | 0.433302 | 6.3:-30569140 | None:intergenic |
| TACATAAAGCAATATGTTGT+AGG | 0.433660 | 6.3:+30568667 | MS.gene75325:CDS |
| TTTAGGGATCAACAGTTTAA+CGG | 0.438221 | 6.3:+30567836 | MS.gene75325:CDS |
| CAAGTATTTGACGACTCCTT+CGG | 0.443084 | 6.3:+30568729 | MS.gene75325:CDS |
| TCCCAGTGAAATCTGTAAAC+AGG | 0.445980 | 6.3:-30569089 | None:intergenic |
| AGGATATATTCCAACAACTC+TGG | 0.460634 | 6.3:-30568064 | None:intergenic |
| CAGTAATCATACTCCTTGTA+AGG | 0.464985 | 6.3:-30569042 | None:intergenic |
| ATGCAGTCTTGTCATCTTGA+CGG | 0.475282 | 6.3:-30569146 | None:intergenic |
| CATATTGCTTTATGTAGTCT+AGG | 0.476260 | 6.3:-30568660 | None:intergenic |
| AGAGTTCATTACCATAGCAT+TGG | 0.485013 | 6.3:+30568035 | MS.gene75325:CDS |
| GATTACTGGATCAACAAAAT+GGG | 0.486674 | 6.3:+30569057 | MS.gene75325:CDS |
| ACATGCTGATTGATAAGTAC+TGG | 0.490440 | 6.3:-30568099 | None:intergenic |
| TAAATAACAGGTGAAATGGT+TGG | 0.491634 | 6.3:+30568274 | MS.gene75325:intron |
| GTTGGACGGCAAACGATTTG+AGG | 0.502827 | 6.3:+30568292 | MS.gene75325:CDS |
| GGCCTGTTTACAGATTTCAC+TGG | 0.506585 | 6.3:+30569087 | MS.gene75325:CDS |
| GATATATTATCTTCCAAAGA+TGG | 0.509816 | 6.3:+30567158 | MS.gene75325:CDS |
| TGTGTATATATCAAATCAAA+CGG | 0.510034 | 6.3:+30568421 | MS.gene75325:CDS |
| ACGGCAAACGATTTGAGGAC+AGG | 0.517302 | 6.3:+30568297 | MS.gene75325:CDS |
| GGATATATTCCAACAACTCT+GGG | 0.526903 | 6.3:-30568063 | None:intergenic |
| ACTTCGGAAATATGGATACA+AGG | 0.529530 | 6.3:+30568331 | MS.gene75325:CDS |
| TGTAGGAATTGGACCTTGGA+AGG | 0.532490 | 6.3:+30568684 | MS.gene75325:CDS |
| TCCTTCGGATCTTGTTGCCA+GGG | 0.533302 | 6.3:+30568744 | MS.gene75325:CDS |
| CTTTAGTCAAGATCCTTACA+AGG | 0.536799 | 6.3:+30569029 | MS.gene75325:CDS |
| GAAGAGGCTGCTTACTTCCA+TGG | 0.541357 | 6.3:-30566240 | None:intergenic |
| GCCTGTTTACAGATTTCACT+GGG | 0.542364 | 6.3:+30569088 | MS.gene75325:CDS |
| GTCAAATACTTGTTAACCAC+AGG | 0.545080 | 6.3:-30568718 | None:intergenic |
| GTTCATACCTGTCAAAACAT+TGG | 0.548979 | 6.3:+30568354 | MS.gene75325:CDS |
| GGCACATGCTCATAATCTGC+AGG | 0.551055 | 6.3:+30568765 | MS.gene75325:CDS |
| AAAAGAACATATGAAGTCGA+AGG | 0.561446 | 6.3:+30567257 | MS.gene75325:CDS |
| TTGCAGAGAGCTATTGAGGA+AGG | 0.565109 | 6.3:+30567116 | MS.gene75325:intron |
| AAAGAACATATGAAGTCGAA+GGG | 0.565876 | 6.3:+30567258 | MS.gene75325:CDS |
| TCTGGGTGCATCCAATGCTA+TGG | 0.574074 | 6.3:-30568046 | None:intergenic |
| ACAGGTTTGTTGAAACACTT+CGG | 0.580004 | 6.3:+30568315 | MS.gene75325:CDS |
| CAGATTATGAGCATGTGCCC+TGG | 0.581110 | 6.3:-30568761 | None:intergenic |
| GTCGAAGGGGTCAATCACAC+TGG | 0.590461 | 6.3:+30567272 | MS.gene75325:CDS |
| GCAAATGACTGTATAAATGC+AGG | 0.604021 | 6.3:-30568386 | None:intergenic |
| ATGTTGTAGGAATTGGACCT+TGG | 0.610872 | 6.3:+30568680 | MS.gene75325:CDS |
| TAAAGTTGAAATGCAAACAC+TGG | 0.613111 | 6.3:-30569011 | None:intergenic |
| AGTCGCTGAGGGTGAATCAG+AGG | 0.615291 | 6.3:+30567807 | MS.gene75325:CDS |
| AAAGGAATTAAAGTCGCTGA+GGG | 0.619575 | 6.3:+30567796 | MS.gene75325:CDS |
| TAAAGGAATTAAAGTCGCTG+AGG | 0.621868 | 6.3:+30567795 | MS.gene75325:CDS |
| CTTCGGAAATATGGATACAA+GGG | 0.630595 | 6.3:+30568332 | MS.gene75325:CDS |
| TAACAGGTGAAATGGTTGGA+CGG | 0.632488 | 6.3:+30568278 | MS.gene75325:intron |
| GAAGGATACTATAGTACCTG+TGG | 0.635202 | 6.3:+30568702 | MS.gene75325:CDS |
| GGTACTATAGTATCCTTCCA+AGG | 0.636568 | 6.3:-30568697 | None:intergenic |
| GCCCTGGCAACAAGATCCGA+AGG | 0.642209 | 6.3:-30568745 | None:intergenic |
| TATTATCAAGAATAAAGTCG+TGG | 0.657370 | 6.3:-30567196 | None:intergenic |
| AAGAACATATGAAGTCGAAG+GGG | 0.698335 | 6.3:+30567259 | MS.gene75325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTGATATAAATAAC+AGG | + | chr6.3:30568262-30568281 | MS.gene75325:intron | 10.0% |
| !!! | AAAAAACAAATATCATTTTT+AGG | - | chr6.3:30567098-30567117 | None:intergenic | 10.0% |
| !!! | TTGTTCATTTTTTTTTATAA+CGG | + | chr6.3:30566447-30566466 | MS.gene75325:intron | 10.0% |
| !! | AAATACATATACATAAATGT+AGG | - | chr6.3:30566569-30566588 | None:intergenic | 15.0% |
| !! | AATACATATACATAAATGTA+GGG | - | chr6.3:30566568-30566587 | None:intergenic | 15.0% |
| !! | ATTTCCTTTGTAAAATATAT+TGG | + | chr6.3:30567341-30567360 | MS.gene75325:intron | 15.0% |
| !! | GAATATATTTAAAAAGAGAA+AGG | - | chr6.3:30566954-30566973 | None:intergenic | 15.0% |
| !! | TTTCCTTTGTAAAATATATT+GGG | + | chr6.3:30567342-30567361 | MS.gene75325:intron | 15.0% |
| !!! | ATTTAACATTAGTTTTGTTT+TGG | + | chr6.3:30566640-30566659 | MS.gene75325:intron | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | + | chr6.3:30566571-30566590 | MS.gene75325:intron | 15.0% |
| !! | AATGGTAACTCAATAAATTA+AGG | - | chr6.3:30567561-30567580 | None:intergenic | 20.0% |
| !! | ATACATATACATAAATGTAG+GGG | - | chr6.3:30566567-30566586 | None:intergenic | 20.0% |
| !! | CAACATTGTATAACATTAAA+CGG | - | chr6.3:30568543-30568562 | None:intergenic | 20.0% |
| !! | CATTCATACAATAATAAGAT+TGG | - | chr6.3:30568213-30568232 | None:intergenic | 20.0% |
| !! | TGTGTATATATCAAATCAAA+CGG | + | chr6.3:30568421-30568440 | MS.gene75325:CDS | 20.0% |
| !! | TTATTATTGTATGAATGTGA+TGG | + | chr6.3:30568216-30568235 | MS.gene75325:intron | 20.0% |
| !!! | AGACGTATTTCTTAATTTTA+GGG | + | chr6.3:30567592-30567611 | MS.gene75325:intron | 20.0% |
| !!! | AGTGAAAGAATGAAATTTTT+TGG | - | chr6.3:30566543-30566562 | None:intergenic | 20.0% |
| !!! | CATTACAGTAATATTTTGTT+AGG | - | chr6.3:30568600-30568619 | None:intergenic | 20.0% |
| !!! | TAGACGTATTTCTTAATTTT+AGG | + | chr6.3:30567591-30567610 | MS.gene75325:intron | 20.0% |
| !!! | TCATCGATTAAAAAAATCTT+AGG | - | chr6.3:30568452-30568471 | None:intergenic | 20.0% |
| ! | AAAACTGGATGAAAGAATAA+TGG | - | chr6.3:30567703-30567722 | None:intergenic | 25.0% |
| ! | ATTATGCACAAACTAGTATT+TGG | + | chr6.3:30567017-30567036 | MS.gene75325:intron | 25.0% |
| ! | CATACAATAATAAGATTGGA+GGG | - | chr6.3:30568209-30568228 | None:intergenic | 25.0% |
| ! | GATATAAATAACAGGTGAAA+TGG | + | chr6.3:30568270-30568289 | MS.gene75325:intron | 25.0% |
| ! | GATATATTATCTTCCAAAGA+TGG | + | chr6.3:30567158-30567177 | MS.gene75325:CDS | 25.0% |
| ! | TAATCATATGAAGAGAAACA+AGG | - | chr6.3:30568809-30568828 | None:intergenic | 25.0% |
| ! | TACATAAAGCAATATGTTGT+AGG | + | chr6.3:30568667-30568686 | MS.gene75325:CDS | 25.0% |
| ! | TATTATCAAGAATAAAGTCG+TGG | - | chr6.3:30567199-30567218 | None:intergenic | 25.0% |
| ! | TCATACAATAATAAGATTGG+AGG | - | chr6.3:30568210-30568229 | None:intergenic | 25.0% |
| !! | AGCAATTTTATGTAATAGCT+CGG | - | chr6.3:30569172-30569191 | None:intergenic | 25.0% |
| !! | AGTAATATTTTGTTAGGCTT+TGG | - | chr6.3:30568594-30568613 | None:intergenic | 25.0% |
| !! | GAATAATGGAATATTGTTTC+TGG | - | chr6.3:30567689-30567708 | None:intergenic | 25.0% |
| !!! | AAGACGTTTTATTTCTCAAT+AGG | + | chr6.3:30567619-30567638 | MS.gene75325:intron | 25.0% |
| !!! | AATGAAATTTTTTGGCCTTT+TGG | - | chr6.3:30566535-30566554 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTTTGGCCTTTT+GGG | - | chr6.3:30566534-30566553 | None:intergenic | 25.0% |
| !!! | TGAACCATTTTAAAATCTGA+TGG | - | chr6.3:30567899-30567918 | None:intergenic | 25.0% |
| AAAAGAACATATGAAGTCGA+AGG | + | chr6.3:30567257-30567276 | MS.gene75325:CDS | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr6.3:30566749-30566768 | None:intergenic | 30.0% | |
| AAAGAACATATGAAGTCGAA+GGG | + | chr6.3:30567258-30567277 | MS.gene75325:CDS | 30.0% | |
| AAGCAATATGTTGTAGGAAT+TGG | + | chr6.3:30568673-30568692 | MS.gene75325:CDS | 30.0% | |
| ACATATAAGAACACCATCTT+TGG | - | chr6.3:30567174-30567193 | None:intergenic | 30.0% | |
| ACATGTATAAGCGAAGAAAA+GGG | - | chr6.3:30567867-30567886 | None:intergenic | 30.0% | |
| ATCAACAAAATGGGAATTGA+TGG | + | chr6.3:30569066-30569085 | MS.gene75325:CDS | 30.0% | |
| ATGATTATGTGCAGTCATAT+TGG | + | chr6.3:30568617-30568636 | MS.gene75325:intron | 30.0% | |
| CATATTGCTTTATGTAGTCT+AGG | - | chr6.3:30568663-30568682 | None:intergenic | 30.0% | |
| CCTTTGTAAAATATATTGGG+AGG | + | chr6.3:30567345-30567364 | MS.gene75325:intron | 30.0% | |
| CTTGAAAGTGATGAAAAAAC+TGG | - | chr6.3:30567718-30567737 | None:intergenic | 30.0% | |
| GATATATACACAAGTGAAGT+TGG | - | chr6.3:30568413-30568432 | None:intergenic | 30.0% | |
| GATTACTGGATCAACAAAAT+GGG | + | chr6.3:30569057-30569076 | MS.gene75325:CDS | 30.0% | |
| TAAAGTTGAAATGCAAACAC+TGG | - | chr6.3:30569014-30569033 | None:intergenic | 30.0% | |
| TAAATAACAGGTGAAATGGT+TGG | + | chr6.3:30568274-30568293 | MS.gene75325:intron | 30.0% | |
| TAAGTCTATTGCCTTATCTT+TGG | + | chr6.3:30567975-30567994 | MS.gene75325:intron | 30.0% | |
| TACGTCTATACAAAGCAAAA+TGG | - | chr6.3:30567579-30567598 | None:intergenic | 30.0% | |
| TGAAAGAGATTCCAAAGATA+AGG | - | chr6.3:30567989-30568008 | None:intergenic | 30.0% | |
| TGATTACTGGATCAACAAAA+TGG | + | chr6.3:30569056-30569075 | MS.gene75325:CDS | 30.0% | |
| TGATTATGTGCAGTCATATT+GGG | + | chr6.3:30568618-30568637 | MS.gene75325:intron | 30.0% | |
| TTTAGGGATCAACAGTTTAA+CGG | + | chr6.3:30567836-30567855 | MS.gene75325:CDS | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | chr6.3:30566736-30566755 | None:intergenic | 30.0% |
| ! | AAGAGAAAGGAATGCAATTT+TGG | - | chr6.3:30566941-30566960 | None:intergenic | 30.0% |
| ! | CCTCCCAATATATTTTACAA+AGG | - | chr6.3:30567348-30567367 | None:intergenic | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr6.3:30566714-30566733 | None:intergenic | 30.0% |
| ! | TGCAGTTGATTTCACATTAA+AGG | + | chr6.3:30567778-30567797 | MS.gene75325:intron | 30.0% |
| !! | AGCTCCATCAGATTTTAAAA+TGG | + | chr6.3:30567892-30567911 | MS.gene75325:intron | 30.0% |
| !! | ATTGACGTCATTTTCAACTT+TGG | + | chr6.3:30567058-30567077 | MS.gene75325:intron | 30.0% |
| !! | CTTTTGGGTATTTATAGAAC+CGG | - | chr6.3:30566519-30566538 | None:intergenic | 30.0% |
| !! | GTCTTCATAATTTTCAGGAA+TGG | + | chr6.3:30569112-30569131 | MS.gene75325:CDS | 30.0% |
| !! | GTTTTTGATAACAATGGAAG+AGG | - | chr6.3:30566259-30566278 | None:intergenic | 30.0% |
| !! | TTATCTTTGGAATCTCTTTC+AGG | + | chr6.3:30567988-30568007 | MS.gene75325:intron | 30.0% |
| !!! | AATCACACTGGATTTTTTGT+CGG | + | chr6.3:30567284-30567303 | MS.gene75325:CDS | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | + | chr6.3:30566421-30566440 | MS.gene75325:intron | 30.0% |
| !!! | ATAACGGTCAATTTTTTACC+CGG | + | chr6.3:30566463-30566482 | MS.gene75325:intron | 30.0% |
| AAACACAAGTAATCAGCAGA+CGG | - | chr6.3:30567927-30567946 | None:intergenic | 35.0% | |
| AAAGGAATTAAAGTCGCTGA+GGG | + | chr6.3:30567796-30567815 | MS.gene75325:CDS | 35.0% | |
| AAGAACATATGAAGTCGAAG+GGG | + | chr6.3:30567259-30567278 | MS.gene75325:CDS | 35.0% | |
| AATCAGGTCTATTTACGAAC+CGG | - | chr6.3:30566485-30566504 | None:intergenic | 35.0% | |
| ACTTCGGAAATATGGATACA+AGG | + | chr6.3:30568331-30568350 | MS.gene75325:CDS | 35.0% | |
| ACTTGTATTGAAAGTCCTCT+TGG | + | chr6.3:30567476-30567495 | MS.gene75325:intron | 35.0% | |
| AGAGTTCATTACCATAGCAT+TGG | + | chr6.3:30568035-30568054 | MS.gene75325:CDS | 35.0% | |
| AGGATATATTCCAACAACTC+TGG | - | chr6.3:30568067-30568086 | None:intergenic | 35.0% | |
| CACATGTATAAGCGAAGAAA+AGG | - | chr6.3:30567868-30567887 | None:intergenic | 35.0% | |
| CAGTAATCATACTCCTTGTA+AGG | - | chr6.3:30569045-30569064 | None:intergenic | 35.0% | |
| CCAATCTTCAAAAGATTGTG+TGG | + | chr6.3:30568839-30568858 | MS.gene75325:intron | 35.0% | |
| CGGTTCTATAAATACCCAAA+AGG | + | chr6.3:30566517-30566536 | MS.gene75325:intron | 35.0% | |
| CTTCGGAAATATGGATACAA+GGG | + | chr6.3:30568332-30568351 | MS.gene75325:CDS | 35.0% | |
| CTTGGGCATCTTAACAAATT+TGG | + | chr6.3:30567494-30567513 | MS.gene75325:intron | 35.0% | |
| CTTGTATTGAAAGTCCTCTT+GGG | + | chr6.3:30567477-30567496 | MS.gene75325:intron | 35.0% | |
| CTTTAGTCAAGATCCTTACA+AGG | + | chr6.3:30569029-30569048 | MS.gene75325:CDS | 35.0% | |
| GACTTTACTTCAAGTCGAAA+GGG | - | chr6.3:30566793-30566812 | None:intergenic | 35.0% | |
| GCAAATGACTGTATAAATGC+AGG | - | chr6.3:30568389-30568408 | None:intergenic | 35.0% | |
| GGATATATTCCAACAACTCT+GGG | - | chr6.3:30568066-30568085 | None:intergenic | 35.0% | |
| GTTCATACCTGTCAAAACAT+TGG | + | chr6.3:30568354-30568373 | MS.gene75325:CDS | 35.0% | |
| GTTGAAACACTTCGGAAATA+TGG | + | chr6.3:30568323-30568342 | MS.gene75325:CDS | 35.0% | |
| GTTTGTGCATAATTGTAGCA+TGG | - | chr6.3:30567010-30567029 | None:intergenic | 35.0% | |
| TAAAGGAATTAAAGTCGCTG+AGG | + | chr6.3:30567795-30567814 | MS.gene75325:CDS | 35.0% | |
| TAGAATCGCAATCAAAATCG+AGG | - | chr6.3:30566672-30566691 | None:intergenic | 35.0% | |
| TAGACTTAGCCATTTCAATG+CGG | - | chr6.3:30567963-30567982 | None:intergenic | 35.0% | |
| TATGGACGAAAAGTTTGAAG+AGG | - | chr6.3:30566835-30566854 | None:intergenic | 35.0% | |
| TCCATATAACGTTGCACATA+GGG | + | chr6.3:30566849-30566868 | MS.gene75325:intron | 35.0% | |
| TCGATATAGGATAGCAAAGT+CGG | - | chr6.3:30566701-30566720 | None:intergenic | 35.0% | |
| TGAAATCCATTCAAAATCGC+AGG | + | chr6.3:30566401-30566420 | MS.gene75325:intron | 35.0% | |
| TTCAACACAAGACACTAATC+AGG | + | chr6.3:30568481-30568500 | MS.gene75325:CDS | 35.0% | |
| TTCTCATTTCTGTACGTGTA+TGG | - | chr6.3:30568991-30569010 | None:intergenic | 35.0% | |
| TTGTATGAATGTGATGGTTG+AGG | + | chr6.3:30568222-30568241 | MS.gene75325:intron | 35.0% | |
| ! | ACATGCTGATTGATAAGTAC+TGG | - | chr6.3:30568102-30568121 | None:intergenic | 35.0% |
| ! | ACCTGATTTGAATCAATGAC+CGG | + | chr6.3:30566497-30566516 | MS.gene75325:intron | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+TGG | - | chr6.3:30566410-30566429 | None:intergenic | 35.0% |
| ! | CTTACAAGGAGTATGATTAC+TGG | + | chr6.3:30569043-30569062 | MS.gene75325:CDS | 35.0% |
| ! | GTCAAATACTTGTTAACCAC+AGG | - | chr6.3:30568721-30568740 | None:intergenic | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | + | chr6.3:30566411-30566430 | MS.gene75325:intron | 35.0% |
| ! | TGGGAGTCTTCATAATTTTC+AGG | + | chr6.3:30569107-30569126 | MS.gene75325:CDS | 35.0% |
| !! | AATTTGTTAAGATGCCCAAG+AGG | - | chr6.3:30567494-30567513 | None:intergenic | 35.0% |
| !! | ACAGGTTTGTTGAAACACTT+CGG | + | chr6.3:30568315-30568334 | MS.gene75325:CDS | 35.0% |
| !! | AGTACTGGACTTTTTATCTC+AGG | - | chr6.3:30568087-30568106 | None:intergenic | 35.0% |
| !! | AGTCGCGTTTTTGATAACAA+TGG | - | chr6.3:30566265-30566284 | None:intergenic | 35.0% |
| !! | ATAGGATTTTGCCTGCTTTT+GGG | - | chr6.3:30566353-30566372 | None:intergenic | 35.0% |
| !! | ATGATTGTTGATGATGATGC+AGG | + | chr6.3:30568960-30568979 | MS.gene75325:intron | 35.0% |
| !! | ATTTTGGCAGAAGAGTTAAG+TGG | - | chr6.3:30566925-30566944 | None:intergenic | 35.0% |
| !! | CCACACAATCTTTTGAAGAT+TGG | - | chr6.3:30568842-30568861 | None:intergenic | 35.0% |
| !! | CGATTTTGTGCGATTTTGAT+AGG | - | chr6.3:30566371-30566390 | None:intergenic | 35.0% |
| !!! | GTTTCAACCAATGTTTTGAC+AGG | - | chr6.3:30568364-30568383 | None:intergenic | 35.0% |
| !!! | TTTTTTGCAGAGAGCTATTG+AGG | + | chr6.3:30567112-30567131 | MS.gene75325:intron | 35.0% |
| AGACTTAGCCATTTCAATGC+GGG | - | chr6.3:30567962-30567981 | None:intergenic | 40.0% | |
| AGGCCAAGGTTATCAAAATC+GGG | - | chr6.3:30566815-30566834 | None:intergenic | 40.0% | |
| ATCAGGTCTATTTACGAACC+GGG | - | chr6.3:30566484-30566503 | None:intergenic | 40.0% | |
| ATGTTGTAGGAATTGGACCT+TGG | + | chr6.3:30568680-30568699 | MS.gene75325:CDS | 40.0% | |
| CAAGTATTTGACGACTCCTT+CGG | + | chr6.3:30568729-30568748 | MS.gene75325:CDS | 40.0% | |
| CAATGAACTTCTTCTGTCTG+TGG | + | chr6.3:30568142-30568161 | MS.gene75325:intron | 40.0% | |
| CACAGACAGAAGAAGTTCAT+TGG | - | chr6.3:30568144-30568163 | None:intergenic | 40.0% | |
| CCATATAACGTTGCACATAG+GGG | + | chr6.3:30566850-30566869 | MS.gene75325:intron | 40.0% | |
| CGATATAGGATAGCAAAGTC+GGG | - | chr6.3:30566700-30566719 | None:intergenic | 40.0% | |
| GAAGGATACTATAGTACCTG+TGG | + | chr6.3:30568702-30568721 | MS.gene75325:CDS | 40.0% | |
| GAATCAGAGGTTCTGCTTTA+GGG | + | chr6.3:30567820-30567839 | MS.gene75325:CDS | 40.0% | |
| GAGGCCAAGGTTATCAAAAT+CGG | - | chr6.3:30566816-30566835 | None:intergenic | 40.0% | |
| GCCTGTTTACAGATTTCACT+GGG | + | chr6.3:30569088-30569107 | MS.gene75325:CDS | 40.0% | |
| GGACTTTACTTCAAGTCGAA+AGG | - | chr6.3:30566794-30566813 | None:intergenic | 40.0% | |
| GGTACTATAGTATCCTTCCA+AGG | - | chr6.3:30568700-30568719 | None:intergenic | 40.0% | |
| GTCCATATAACGTTGCACAT+AGG | + | chr6.3:30566848-30566867 | MS.gene75325:intron | 40.0% | |
| TAACAGGTGAAATGGTTGGA+CGG | + | chr6.3:30568278-30568297 | MS.gene75325:intron | 40.0% | |
| TATTGGACCGCAGAAAATAC+TGG | - | chr6.3:30568915-30568934 | None:intergenic | 40.0% | |
| TCCCAGTGAAATCTGTAAAC+AGG | - | chr6.3:30569092-30569111 | None:intergenic | 40.0% | |
| TCGAAAGGGAGTAGCAAAAT+CGG | - | chr6.3:30566779-30566798 | None:intergenic | 40.0% | |
| TCGAGCAGTGTTGTCAATAT+TGG | - | chr6.3:30568932-30568951 | None:intergenic | 40.0% | |
| TCTTGTCATCTTGACGGTTA+GGG | - | chr6.3:30569143-30569162 | None:intergenic | 40.0% | |
| TGAATCAGAGGTTCTGCTTT+AGG | + | chr6.3:30567819-30567838 | MS.gene75325:CDS | 40.0% | |
| ! | AGTCGCAAAAACCAGGATTT+TGG | - | chr6.3:30566294-30566313 | None:intergenic | 40.0% |
| ! | ATGCAGTCTTGTCATCTTGA+CGG | - | chr6.3:30569149-30569168 | None:intergenic | 40.0% |
| ! | GAGCAAACCAGTATTTTCTG+CGG | + | chr6.3:30568905-30568924 | MS.gene75325:intron | 40.0% |
| ! | GATAGGATTTTGCCTGCTTT+TGG | - | chr6.3:30566354-30566373 | None:intergenic | 40.0% |
| ! | GTCGCAAAAACCAGGATTTT+GGG | - | chr6.3:30566293-30566312 | None:intergenic | 40.0% |
| !! | ACCGGTCATTGATTCAAATC+AGG | - | chr6.3:30566501-30566520 | None:intergenic | 40.0% |
| !! | AGTCCCGATTTTGATAACCT+TGG | + | chr6.3:30566809-30566828 | MS.gene75325:intron | 40.0% |
| !! | ATTTCTAGTGACACGTAGTC+TGG | + | chr6.3:30567427-30567446 | MS.gene75325:intron | 40.0% |
| ATGTGATGCCCGCATTGAAA+TGG | + | chr6.3:30567951-30567970 | MS.gene75325:intron | 45.0% | |
| CATAGCAAAGTCCCAAAAGC+AGG | + | chr6.3:30566339-30566358 | MS.gene75325:intron | 45.0% | |
| CCCCTATGTGCAACGTTATA+TGG | - | chr6.3:30566853-30566872 | None:intergenic | 45.0% | |
| CGAAAAGTTTGAAGAGGCCA+AGG | - | chr6.3:30566829-30566848 | None:intergenic | 45.0% | |
| CGAAAGGGAGTAGCAAAATC+GGG | - | chr6.3:30566778-30566797 | None:intergenic | 45.0% | |
| CGACTTAAGTCCCAAAATCC+TGG | + | chr6.3:30566280-30566299 | MS.gene75325:intron | 45.0% | |
| GGCCTGTTTACAGATTTCAC+TGG | + | chr6.3:30569087-30569106 | MS.gene75325:CDS | 45.0% | |
| GTCTTGTCATCTTGACGGTT+AGG | - | chr6.3:30569144-30569163 | None:intergenic | 45.0% | |
| TACGCAAAGTCGCAAAAACC+AGG | - | chr6.3:30566301-30566320 | None:intergenic | 45.0% | |
| TGACACGTAGTCTGGAAAGT+CGG | + | chr6.3:30567435-30567454 | MS.gene75325:intron | 45.0% | |
| TGTAGGAATTGGACCTTGGA+AGG | + | chr6.3:30568684-30568703 | MS.gene75325:CDS | 45.0% | |
| TTGCAGAGAGCTATTGAGGA+AGG | + | chr6.3:30567116-30567135 | MS.gene75325:intron | 45.0% | |
| !!! | CTGCTTTTGGGACTTTGCTA+TGG | - | chr6.3:30566341-30566360 | None:intergenic | 45.0% |
| ACGGCAAACGATTTGAGGAC+AGG | + | chr6.3:30568297-30568316 | MS.gene75325:CDS | 50.0% | |
| ACTTCCTGAAGAAACTCGCG+AGG | + | chr6.3:30566885-30566904 | MS.gene75325:intron | 50.0% | |
| AGAAACTCGCGAGGCATATC+TGG | + | chr6.3:30566894-30566913 | MS.gene75325:intron | 50.0% | |
| CAGATTATGAGCATGTGCCC+TGG | - | chr6.3:30568764-30568783 | None:intergenic | 50.0% | |
| GGCACATGCTCATAATCTGC+AGG | + | chr6.3:30568765-30568784 | MS.gene75325:CDS | 50.0% | |
| GTTGCACATAGGGGCTCAAA+TGG | + | chr6.3:30566859-30566878 | MS.gene75325:intron | 50.0% | |
| GTTGGACGGCAAACGATTTG+AGG | + | chr6.3:30568292-30568311 | MS.gene75325:CDS | 50.0% | |
| TATGCCTCGCGAGTTTCTTC+AGG | - | chr6.3:30566892-30566911 | None:intergenic | 50.0% | |
| TCCTTCGGATCTTGTTGCCA+GGG | + | chr6.3:30568744-30568763 | MS.gene75325:CDS | 50.0% | |
| TCTGGGTGCATCCAATGCTA+TGG | - | chr6.3:30568049-30568068 | None:intergenic | 50.0% | |
| TTGGATGCACCCAGAGTTGT+TGG | + | chr6.3:30568054-30568073 | MS.gene75325:CDS | 50.0% | |
| AGTCGCTGAGGGTGAATCAG+AGG | + | chr6.3:30567807-30567826 | MS.gene75325:CDS | 55.0% | |
| CTCCTTCGGATCTTGTTGCC+AGG | + | chr6.3:30568743-30568762 | MS.gene75325:CDS | 55.0% | |
| GTCGAAGGGGTCAATCACAC+TGG | + | chr6.3:30567272-30567291 | MS.gene75325:CDS | 55.0% | |
| GCCCTGGCAACAAGATCCGA+AGG | - | chr6.3:30568748-30568767 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 30566242 | 30569215 | 30566242 | ID=MS.gene75325 |
| chr6.3 | mRNA | 30566242 | 30569215 | 30566242 | ID=MS.gene75325.t1;Parent=MS.gene75325 |
| chr6.3 | exon | 30566242 | 30566247 | 30566242 | ID=MS.gene75325.t1.exon1;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30566242 | 30566247 | 30566242 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30567122 | 30567305 | 30567122 | ID=MS.gene75325.t1.exon2;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30567122 | 30567305 | 30567122 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30567783 | 30567857 | 30567783 | ID=MS.gene75325.t1.exon3;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30567783 | 30567857 | 30567783 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30568010 | 30568119 | 30568010 | ID=MS.gene75325.t1.exon4;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30568010 | 30568119 | 30568010 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30568284 | 30568502 | 30568284 | ID=MS.gene75325.t1.exon5;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30568284 | 30568502 | 30568284 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30568631 | 30568786 | 30568631 | ID=MS.gene75325.t1.exon6;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30568631 | 30568786 | 30568631 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| chr6.3 | exon | 30568982 | 30569215 | 30568982 | ID=MS.gene75325.t1.exon7;Parent=MS.gene75325.t1 |
| chr6.3 | CDS | 30568982 | 30569215 | 30568982 | ID=cds.MS.gene75325.t1;Parent=MS.gene75325.t1 |
| Gene Sequence |
| Protein sequence |
