Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76197.t1 | XP_013470314.1 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 2.50E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76197.t1 | Q9C9X3 | 55.2 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.3e-94 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76197.t1 | A0A072VRI5 | 97.1 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 1.8e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76197 | MS.gene00058 | PPI |
| MS.gene016642 | MS.gene76197 | PPI |
| MS.gene76197 | MS.gene058336 | PPI |
| MS.gene76197 | MS.gene67887 | PPI |
| MS.gene76197 | MS.gene89484 | PPI |
| MS.gene28077 | MS.gene76197 | PPI |
| MS.gene76197 | MS.gene035891 | PPI |
| MS.gene76197 | MS.gene010215 | PPI |
| MS.gene76197 | MS.gene92405 | PPI |
| MS.gene056195 | MS.gene76197 | PPI |
| MS.gene57291 | MS.gene76197 | PPI |
| MS.gene76197 | MS.gene030809 | PPI |
| MS.gene76197 | MS.gene043964 | PPI |
| MS.gene45772 | MS.gene76197 | PPI |
| MS.gene76197 | MS.gene061777 | PPI |
| MS.gene76197 | MS.gene55897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76197.t1 | MTR_1g112520 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 639 |
| MS.gene76197.t1 | MTR_6g071615 | 91.746 | 315 | 26 | 0 | 1 | 315 | 1 | 315 | 0.0 | 588 |
| MS.gene76197.t1 | MTR_6g071605 | 88.254 | 315 | 37 | 0 | 1 | 315 | 1 | 315 | 0.0 | 583 |
| MS.gene76197.t1 | MTR_6g071595 | 90.794 | 315 | 29 | 0 | 1 | 315 | 1 | 315 | 0.0 | 559 |
| MS.gene76197.t1 | MTR_8g107640 | 78.662 | 314 | 67 | 0 | 1 | 314 | 1 | 314 | 0.0 | 533 |
| MS.gene76197.t1 | MTR_6g071595 | 89.200 | 250 | 27 | 0 | 1 | 250 | 1 | 250 | 1.27e-161 | 451 |
| MS.gene76197.t1 | MTR_1g033560 | 60.063 | 318 | 121 | 3 | 1 | 315 | 1 | 315 | 5.75e-138 | 393 |
| MS.gene76197.t1 | MTR_8g038150 | 38.486 | 317 | 188 | 3 | 1 | 312 | 1 | 315 | 7.24e-72 | 225 |
| MS.gene76197.t1 | MTR_3g018780 | 37.778 | 315 | 193 | 3 | 1 | 314 | 1 | 313 | 2.91e-69 | 218 |
| MS.gene76197.t1 | MTR_8g038180 | 37.975 | 316 | 193 | 3 | 1 | 315 | 1 | 314 | 2.97e-68 | 216 |
| MS.gene76197.t1 | MTR_8g038220 | 37.580 | 314 | 191 | 4 | 1 | 312 | 1 | 311 | 9.42e-68 | 214 |
| MS.gene76197.t1 | MTR_8g038220 | 37.580 | 314 | 190 | 4 | 1 | 312 | 1 | 310 | 1.32e-67 | 214 |
| MS.gene76197.t1 | MTR_5g063670 | 37.304 | 319 | 190 | 5 | 1 | 314 | 1 | 314 | 4.11e-67 | 213 |
| MS.gene76197.t1 | MTR_3g018790 | 38.339 | 313 | 190 | 3 | 1 | 312 | 1 | 311 | 5.84e-67 | 212 |
| MS.gene76197.t1 | MTR_0276s0050 | 37.261 | 314 | 193 | 3 | 1 | 312 | 1 | 312 | 3.70e-65 | 207 |
| MS.gene76197.t1 | MTR_2g031980 | 36.306 | 314 | 195 | 4 | 1 | 312 | 1 | 311 | 2.16e-64 | 206 |
| MS.gene76197.t1 | MTR_8g038210 | 35.577 | 312 | 199 | 2 | 1 | 312 | 1 | 310 | 5.16e-61 | 197 |
| MS.gene76197.t1 | MTR_8g038210 | 35.144 | 313 | 201 | 2 | 1 | 313 | 1 | 311 | 8.10e-60 | 194 |
| MS.gene76197.t1 | MTR_3g018790 | 33.610 | 241 | 158 | 2 | 74 | 313 | 19 | 258 | 1.26e-40 | 142 |
| MS.gene76197.t1 | MTR_6g028030 | 32.117 | 274 | 178 | 5 | 45 | 310 | 34 | 307 | 5.00e-40 | 142 |
| MS.gene76197.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene76197.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 4.87e-36 | 132 |
| MS.gene76197.t1 | MTR_3g018920 | 33.491 | 212 | 108 | 3 | 1 | 212 | 1 | 179 | 1.55e-29 | 111 |
| MS.gene76197.t1 | MTR_3g018925 | 43.478 | 92 | 52 | 0 | 222 | 313 | 16 | 107 | 2.03e-17 | 77.0 |
| MS.gene76197.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 3.02e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76197.t1 | AT1G68090 | 55.205 | 317 | 137 | 2 | 1 | 314 | 1 | 315 | 1.07e-127 | 367 |
| MS.gene76197.t1 | AT1G68090 | 52.381 | 252 | 115 | 2 | 1 | 249 | 1 | 250 | 1.15e-91 | 273 |
| MS.gene76197.t1 | AT1G68090 | 26.291 | 213 | 136 | 5 | 108 | 311 | 37 | 237 | 3.03e-16 | 77.4 |
| MS.gene76197.t1 | AT5G10230 | 40.190 | 316 | 187 | 2 | 1 | 315 | 1 | 315 | 3.32e-79 | 244 |
| MS.gene76197.t1 | AT5G65020 | 41.270 | 315 | 180 | 4 | 1 | 312 | 1 | 313 | 9.14e-78 | 240 |
| MS.gene76197.t1 | AT5G10220 | 39.308 | 318 | 189 | 3 | 1 | 315 | 1 | 317 | 1.18e-77 | 240 |
| MS.gene76197.t1 | AT1G35720 | 38.245 | 319 | 188 | 4 | 1 | 314 | 1 | 315 | 1.69e-69 | 219 |
| MS.gene76197.t1 | AT5G12380 | 36.909 | 317 | 189 | 5 | 1 | 312 | 1 | 311 | 3.82e-67 | 213 |
| MS.gene76197.t1 | AT5G65020 | 40.000 | 290 | 169 | 4 | 26 | 312 | 11 | 298 | 6.99e-67 | 212 |
| MS.gene76197.t1 | AT2G38760 | 34.169 | 319 | 202 | 3 | 1 | 312 | 1 | 318 | 2.11e-57 | 188 |
| MS.gene76197.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 2 | 301 | 1.63e-32 | 122 |
| MS.gene76197.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 19 | 318 | 1.83e-32 | 122 |
Find 69 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCTTTCACTGAATATT+TGG | 0.107454 | 1.1:+79561802 | None:intergenic |
| TATAAGGCAATGAAAGGTTT+AGG | 0.249516 | 1.1:-79560741 | MS.gene76197:CDS |
| CAGTTATACCATTCAAAGTT+TGG | 0.326253 | 1.1:-79562504 | MS.gene76197:CDS |
| AAAACATCTTGACTAATGAT+TGG | 0.345482 | 1.1:+79560554 | None:intergenic |
| AATGAAGCTTCAGGGAATTT+CGG | 0.347354 | 1.1:-79561627 | MS.gene76197:CDS |
| ACCTTTGCAAAATACTTTCC+TGG | 0.349017 | 1.1:+79561567 | None:intergenic |
| AACCATGCAGGTATTGTATA+AGG | 0.355765 | 1.1:-79560757 | MS.gene76197:intron |
| GAAGTCAAATCAAACACTTC+GGG | 0.366848 | 1.1:-79562465 | MS.gene76197:CDS |
| TGAAAGGAGTGCCGCACATT+TGG | 0.368181 | 1.1:-79561790 | MS.gene76197:CDS |
| AAAATACTTTCCTGGATTAG+TGG | 0.371943 | 1.1:+79561575 | None:intergenic |
| GCAGTAAAGAATGAAGCTTC+AGG | 0.375034 | 1.1:-79561636 | MS.gene76197:CDS |
| ATAAGGCAATGAAAGGTTTA+GGG | 0.382653 | 1.1:-79560740 | MS.gene76197:CDS |
| GCAGTTCACTCTGAAACTTC+TGG | 0.384023 | 1.1:-79560612 | MS.gene76197:CDS |
| AAACATCTTGACTAATGATT+GGG | 0.384346 | 1.1:+79560555 | None:intergenic |
| GGAGCTGAGTGGAAAGTTAG+AGG | 0.411832 | 1.1:-79563046 | MS.gene76197:intron |
| TTCAGACTGCTGTTCTACTT+TGG | 0.419993 | 1.1:-79562650 | MS.gene76197:intron |
| CTAATGATAACACGCTGATA+AGG | 0.423632 | 1.1:-79560716 | MS.gene76197:CDS |
| ATGTTGTTCGATATTCTTGT+TGG | 0.429076 | 1.1:+79563100 | None:intergenic |
| TCTTATTATCATGACATGTA+TGG | 0.429350 | 1.1:-79561756 | MS.gene76197:CDS |
| GCTTTCGAAACGCTTGGTTT+CGG | 0.430820 | 1.1:-79563067 | MS.gene76197:CDS |
| TTACTTCGGTAGCAGCTTCA+AGG | 0.438270 | 1.1:+79562565 | None:intergenic |
| GCAATTTCTCTATTAACCTC+AGG | 0.450053 | 1.1:+79561894 | None:intergenic |
| CCTCAGGGCCTTCGTGGCGA+GGG | 0.459091 | 1.1:+79561910 | None:intergenic |
| GATAAACTCCAAACTTTGAA+TGG | 0.459814 | 1.1:+79562496 | None:intergenic |
| TAATGATAACACGCTGATAA+GGG | 0.464492 | 1.1:-79560715 | MS.gene76197:CDS |
| ACCTCAGGGCCTTCGTGGCG+AGG | 0.470530 | 1.1:+79561909 | None:intergenic |
| GACGTGATGTGGAAATCATC+AGG | 0.480749 | 1.1:-79562611 | MS.gene76197:CDS |
| ATTTCCACATCACGTCCTGC+AGG | 0.480920 | 1.1:+79562618 | None:intergenic |
| ATCCAATGTGCCACTAATCC+AGG | 0.481177 | 1.1:-79561585 | MS.gene76197:CDS |
| ACATCACGTCCTGCAGGGTC+AGG | 0.483921 | 1.1:+79562624 | None:intergenic |
| CTGAAACTTCTGGCAACTAC+AGG | 0.484095 | 1.1:-79560602 | MS.gene76197:CDS |
| TTTAGATATTGTAGTTGGGA+TGG | 0.486564 | 1.1:+79562528 | None:intergenic |
| TCGATATTCTTGTTGGATGT+AGG | 0.488103 | 1.1:+79563107 | None:intergenic |
| TAATAGAGAAATTGCTGAGA+AGG | 0.492113 | 1.1:-79561886 | MS.gene76197:CDS |
| CAACTTTACCGTGCTTTCAA+AGG | 0.494780 | 1.1:-79564083 | MS.gene76197:intron |
| TTGTCCAAATATTCAGTGAA+AGG | 0.504472 | 1.1:-79561806 | MS.gene76197:CDS |
| CAGTAAAGAATGAAGCTTCA+GGG | 0.507933 | 1.1:-79561635 | MS.gene76197:CDS |
| CTTTGGATGCCTGACCCTGC+AGG | 0.523684 | 1.1:-79562633 | MS.gene76197:CDS |
| AGAGGAGCTTTCGAAACGCT+TGG | 0.524295 | 1.1:-79563073 | MS.gene76197:CDS |
| TGAAGTCAAATCAAACACTT+CGG | 0.531066 | 1.1:-79562466 | MS.gene76197:CDS |
| TATTAACCTCAGGGCCTTCG+TGG | 0.534153 | 1.1:+79561904 | None:intergenic |
| AGTTGCATCGCATCATCTCT+AGG | 0.551159 | 1.1:+79564101 | None:intergenic |
| CGCATCATCTCTAGGAGAAG+GGG | 0.552806 | 1.1:+79564109 | None:intergenic |
| TCGCATCATCTCTAGGAGAA+GGG | 0.556950 | 1.1:+79564108 | None:intergenic |
| TTCCTGGATTAGTGGCACAT+TGG | 0.563028 | 1.1:+79561583 | None:intergenic |
| CATCAGGAAGTCTCTAGTTG+TGG | 0.566789 | 1.1:-79562595 | MS.gene76197:CDS |
| ATCGCATCATCTCTAGGAGA+AGG | 0.567055 | 1.1:+79564107 | None:intergenic |
| GCAAAGGTTCTCTACAAAGC+GGG | 0.570145 | 1.1:-79561861 | MS.gene76197:CDS |
| CTCAGGGCCTTCGTGGCGAG+GGG | 0.572201 | 1.1:+79561911 | None:intergenic |
| GTAGAAGAAGATGGCTACAC+TGG | 0.572744 | 1.1:-79564147 | None:intergenic |
| TGCAAAGGTTCTCTACAAAG+CGG | 0.594581 | 1.1:-79561862 | MS.gene76197:CDS |
| CAATTTCTCTATTAACCTCA+GGG | 0.596064 | 1.1:+79561895 | None:intergenic |
| GTATGGTCACTCATTGAAGA+AGG | 0.597830 | 1.1:-79561739 | MS.gene76197:intron |
| AGAGGGTACCTTTGAAAGCA+CGG | 0.601480 | 1.1:+79564075 | None:intergenic |
| TGACCCTGCAGGACGTGATG+TGG | 0.603910 | 1.1:-79562622 | MS.gene76197:CDS |
| GTATTGTATAAGGCAATGAA+AGG | 0.612404 | 1.1:-79560747 | MS.gene76197:CDS |
| AATTGCTGAGAAGGATGCAA+AGG | 0.621549 | 1.1:-79561877 | MS.gene76197:CDS |
| CCCTCGCCACGAAGGCCCTG+AGG | 0.636025 | 1.1:-79561910 | MS.gene76197:CDS |
| AAGTCAAATCAAACACTTCG+GGG | 0.641575 | 1.1:-79562464 | MS.gene76197:CDS |
| TTTCCACATCACGTCCTGCA+GGG | 0.641940 | 1.1:+79562619 | None:intergenic |
| CGCTTGGTTTCGGAGCTGAG+TGG | 0.675769 | 1.1:-79563057 | MS.gene76197:CDS |
| ACTGACTGCAGCCAAATGTG+CGG | 0.677644 | 1.1:+79561779 | None:intergenic |
| AGTGCGTGAACAGATTACTT+CGG | 0.681370 | 1.1:+79562551 | None:intergenic |
| TGATAAGGGTAATTGTAACA+AGG | 0.683491 | 1.1:-79560701 | MS.gene76197:CDS |
| GCATCATCTCTAGGAGAAGG+GGG | 0.685619 | 1.1:+79564110 | None:intergenic |
| AAAGCGGGTGAAAAGAAACT+CGG | 0.691984 | 1.1:-79561846 | MS.gene76197:CDS |
| AGTCAAATCAAACACTTCGG+GGG | 0.699436 | 1.1:-79562463 | MS.gene76197:CDS |
| GTAAGTACCCCTCGCCACGA+AGG | 0.701381 | 1.1:-79561918 | MS.gene76197:CDS |
| ATATCGAACAACATACTCAG+AGG | 0.713202 | 1.1:-79563091 | MS.gene76197:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATTTTATAAATGATT+AGG | + | chr1.1:79561132-79561151 | None:intergenic | 10.0% |
| !!! | TTCAATTTTATAAATGATTA+GGG | + | chr1.1:79561131-79561150 | None:intergenic | 10.0% |
| !! | ATAGAATTAGAATGAAATAA+AGG | + | chr1.1:79561503-79561522 | None:intergenic | 15.0% |
| !! | TCTTTATACAAAGAATATTT+CGG | + | chr1.1:79561440-79561459 | None:intergenic | 15.0% |
| !! | TTTATTTCATTCTAATTCTA+TGG | - | chr1.1:79561502-79561521 | MS.gene76197:intron | 15.0% |
| !!! | AATTCATTAAAATTTTGTGT+GGG | - | chr1.1:79563569-79563588 | MS.gene76197:intron | 15.0% |
| !!! | ACACAAAATTTTAATGAATT+AGG | + | chr1.1:79563569-79563588 | None:intergenic | 15.0% |
| !!! | ATTTAAATTTGTGTAACTTT+TGG | - | chr1.1:79563634-79563653 | MS.gene76197:intron | 15.0% |
| !!! | TAATTCATTAAAATTTTGTG+TGG | - | chr1.1:79563568-79563587 | MS.gene76197:intron | 15.0% |
| !! | GGAAAATTAAGACATTTAAA+AGG | + | chr1.1:79563894-79563913 | None:intergenic | 20.0% |
| !! | TATAATCAGAAGAATATGAT+AGG | + | chr1.1:79562354-79562373 | None:intergenic | 20.0% |
| !! | TTAGATGAAAAATACTAATG+TGG | + | chr1.1:79561363-79561382 | None:intergenic | 20.0% |
| !! | TTATAACAGAAATTTAGAGA+TGG | - | chr1.1:79562410-79562429 | MS.gene76197:intron | 20.0% |
| !! | TTCTAGATTCAAAATGTTAA+AGG | - | chr1.1:79562567-79562586 | MS.gene76197:CDS | 20.0% |
| !! | TTGTCAAACTTAATATTACA+AGG | - | chr1.1:79561045-79561064 | MS.gene76197:intron | 20.0% |
| !!! | AAACAAGTTTTTTGCATAAA+TGG | + | chr1.1:79562748-79562767 | None:intergenic | 20.0% |
| !!! | AATATACAAATTTTGTGCAT+AGG | + | chr1.1:79563915-79563934 | None:intergenic | 20.0% |
| !!! | TAAACTAAGAGCTTTTTAAT+TGG | + | chr1.1:79563320-79563339 | None:intergenic | 20.0% |
| !!! | TTCAACTTTTTCTGATAATA+AGG | - | chr1.1:79562519-79562538 | MS.gene76197:CDS | 20.0% |
| ! | AATGAGTTAGCTAATACATT+TGG | + | chr1.1:79563617-79563636 | None:intergenic | 25.0% |
| ! | AGAATGAAATAAAGGTTTCA+TGG | + | chr1.1:79561495-79561514 | None:intergenic | 25.0% |
| ! | ATAACAACAGAAATTAGAGA+TGG | + | chr1.1:79562499-79562518 | None:intergenic | 25.0% |
| ! | ATGACAAATTAGTCACATTA+TGG | - | chr1.1:79562323-79562342 | MS.gene76197:intron | 25.0% |
| ! | CATTATCATGAAAGCAATAA+AGG | + | chr1.1:79562659-79562678 | None:intergenic | 25.0% |
| ! | CTAATTTCATTCCACAAAAT+CGG | - | chr1.1:79560786-79560805 | MS.gene76197:intron | 25.0% |
| ! | CTACTACTACTACAATATTT+AGG | + | chr1.1:79560911-79560930 | None:intergenic | 25.0% |
| ! | CTCATATTAGAAATAAGAGA+AGG | + | chr1.1:79563505-79563524 | None:intergenic | 25.0% |
| ! | GAAATAAGAGAAGGATAAAA+AGG | + | chr1.1:79563496-79563515 | None:intergenic | 25.0% |
| ! | GACTGAAAATTGCATTAATT+TGG | - | chr1.1:79561188-79561207 | MS.gene76197:intron | 25.0% |
| ! | GTATAAAGAGATTACTTGTA+AGG | - | chr1.1:79561451-79561470 | MS.gene76197:intron | 25.0% |
| ! | GTCTCAAGTTTATAAAACAA+AGG | - | chr1.1:79562699-79562718 | MS.gene76197:intron | 25.0% |
| ! | GTTATTGAACACAAAAATTG+TGG | + | chr1.1:79563217-79563236 | None:intergenic | 25.0% |
| ! | TCTTATTATCATGACATGTA+TGG | - | chr1.1:79562947-79562966 | MS.gene76197:intron | 25.0% |
| ! | TTAAATCATAGACAGTTCAT+AGG | - | chr1.1:79562594-79562613 | MS.gene76197:CDS | 25.0% |
| !! | AAAAAGTGTACTTCAATATG+TGG | - | chr1.1:79561395-79561414 | MS.gene76197:intron | 25.0% |
| !! | AGAGAGTACGTAATATAAAA+AGG | + | chr1.1:79560749-79560768 | None:intergenic | 25.0% |
| !! | TCAACTTTTTATAGTAGTGT+CGG | + | chr1.1:79562388-79562407 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAGATATTGTAGT+TGG | + | chr1.1:79562183-79562202 | None:intergenic | 25.0% |
| !!! | CTATTTATAGACTCACTTTT+AGG | + | chr1.1:79560843-79560862 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | + | chr1.1:79562182-79562201 | None:intergenic | 25.0% |
| !!! | CTTCTCTTATTTCTAATATG+AGG | - | chr1.1:79563503-79563522 | MS.gene76197:intron | 25.0% |
| AAGACATTTAAAAGGTTCTC+TGG | + | chr1.1:79563886-79563905 | None:intergenic | 30.0% | |
| AATCAGAAGAATATGATAGG+AGG | + | chr1.1:79562351-79562370 | None:intergenic | 30.0% | |
| AATTTGTCATGTGATGACTA+AGG | + | chr1.1:79562313-79562332 | None:intergenic | 30.0% | |
| ATAAGGCAATGAAAGGTTTA+GGG | - | chr1.1:79563963-79563982 | MS.gene76197:intron | 30.0% | |
| ATACCGTATACGTTGAATAA+TGG | + | chr1.1:79561098-79561117 | None:intergenic | 30.0% | |
| ATCCATTTATAGATGTGAGA+AGG | + | chr1.1:79560983-79561002 | None:intergenic | 30.0% | |
| ATGTTGTTCGATATTCTTGT+TGG | + | chr1.1:79561606-79561625 | None:intergenic | 30.0% | |
| CAATTTCTCTATTAACCTCA+GGG | + | chr1.1:79562811-79562830 | None:intergenic | 30.0% | |
| CAGTTATACCATTCAAAGTT+TGG | - | chr1.1:79562199-79562218 | MS.gene76197:intron | 30.0% | |
| GATAAACTCCAAACTTTGAA+TGG | + | chr1.1:79562210-79562229 | None:intergenic | 30.0% | |
| GTATTGTATAAGGCAATGAA+AGG | - | chr1.1:79563956-79563975 | MS.gene76197:intron | 30.0% | |
| TAATAGAGAAATTGCTGAGA+AGG | - | chr1.1:79562817-79562836 | MS.gene76197:intron | 30.0% | |
| TAATGATAACACGCTGATAA+GGG | - | chr1.1:79563988-79564007 | MS.gene76197:intron | 30.0% | |
| TAGCCATTATTCAACGTATA+CGG | - | chr1.1:79561092-79561111 | MS.gene76197:intron | 30.0% | |
| TATAAGGCAATGAAAGGTTT+AGG | - | chr1.1:79563962-79563981 | MS.gene76197:intron | 30.0% | |
| TCCATTTATAGATGTGAGAA+GGG | + | chr1.1:79560982-79561001 | None:intergenic | 30.0% | |
| TGAAGTCAAATCAAACACTT+CGG | - | chr1.1:79562237-79562256 | MS.gene76197:intron | 30.0% | |
| TGATAAGGGTAATTGTAACA+AGG | - | chr1.1:79564002-79564021 | MS.gene76197:intron | 30.0% | |
| TGTAGATTAGTACATTAGCA+TGG | - | chr1.1:79563409-79563428 | MS.gene76197:intron | 30.0% | |
| TTCTAATTCTATGGTTTCAC+AGG | - | chr1.1:79561511-79561530 | MS.gene76197:intron | 30.0% | |
| TTGTATCAGTGTTTCATACT+TGG | - | chr1.1:79563850-79563869 | MS.gene76197:intron | 30.0% | |
| TTGTCCAAATATTCAGTGAA+AGG | - | chr1.1:79562897-79562916 | MS.gene76197:intron | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | + | chr1.1:79562178-79562197 | None:intergenic | 30.0% | |
| TTTCAAGCTGAAATCATATC+AGG | - | chr1.1:79563045-79563064 | MS.gene76197:intron | 30.0% | |
| ! | AAAATACTTTCCTGGATTAG+TGG | + | chr1.1:79563131-79563150 | None:intergenic | 30.0% |
| ! | ATTTGTGTAACTTTTGGTCA+AGG | - | chr1.1:79563640-79563659 | MS.gene76197:intron | 30.0% |
| ! | CGATTTTGTGGAATGAAATT+AGG | + | chr1.1:79560788-79560807 | None:intergenic | 30.0% |
| !! | ACAAAAAGACAATCTGGTTT+TGG | + | chr1.1:79563291-79563310 | None:intergenic | 30.0% |
| !!! | ATAGATCTGCATTTTTTGTG+AGG | - | chr1.1:79561238-79561257 | MS.gene76197:intron | 30.0% |
| AAAACTTGATCTGCTCTGTA+TGG | + | chr1.1:79561942-79561961 | None:intergenic | 35.0% | |
| AAGTCAAATCAAACACTTCG+GGG | - | chr1.1:79562239-79562258 | MS.gene76197:intron | 35.0% | |
| AATGAAGCTTCAGGGAATTT+CGG | - | chr1.1:79563076-79563095 | MS.gene76197:CDS | 35.0% | |
| AATTCGAATATCAAACCACC+AGG | + | chr1.1:79561020-79561039 | None:intergenic | 35.0% | |
| ACCCTTCTCACATCTATAAA+TGG | - | chr1.1:79560978-79560997 | MS.gene76197:intron | 35.0% | |
| ACCTTTGCAAAATACTTTCC+TGG | + | chr1.1:79563139-79563158 | None:intergenic | 35.0% | |
| AGCAAGACAAAAAGACAATC+TGG | + | chr1.1:79563297-79563316 | None:intergenic | 35.0% | |
| AGGCAGGAAATAGTTATGAA+AGG | - | chr1.1:79563255-79563274 | MS.gene76197:intron | 35.0% | |
| ATAATGGCTAAAAGTGAGTG+AGG | + | chr1.1:79561082-79561101 | None:intergenic | 35.0% | |
| ATATCGAACAACATACTCAG+AGG | - | chr1.1:79561612-79561631 | MS.gene76197:CDS | 35.0% | |
| ATTCGAATATCAAACCACCA+GGG | + | chr1.1:79561019-79561038 | None:intergenic | 35.0% | |
| ATTTATAGATGTGAGAAGGG+TGG | + | chr1.1:79560979-79560998 | None:intergenic | 35.0% | |
| CAACCCTAAAAAAAGTCACA+AGG | + | chr1.1:79560704-79560723 | None:intergenic | 35.0% | |
| CACTCCTTTCACTGAATATT+TGG | + | chr1.1:79562904-79562923 | None:intergenic | 35.0% | |
| CAGTAAAGAATGAAGCTTCA+GGG | - | chr1.1:79563068-79563087 | MS.gene76197:CDS | 35.0% | |
| CTAATGATAACACGCTGATA+AGG | - | chr1.1:79563987-79564006 | MS.gene76197:intron | 35.0% | |
| GAAGTCAAATCAAACACTTC+GGG | - | chr1.1:79562238-79562257 | MS.gene76197:intron | 35.0% | |
| GCAATTTCTCTATTAACCTC+AGG | + | chr1.1:79562812-79562831 | None:intergenic | 35.0% | |
| GGCAGGAAATAGTTATGAAA+GGG | - | chr1.1:79563256-79563275 | MS.gene76197:intron | 35.0% | |
| TAATGATGTATACGTGTGAG+TGG | - | chr1.1:79563812-79563831 | MS.gene76197:intron | 35.0% | |
| TAATGGCTAAAAGTGAGTGA+GGG | + | chr1.1:79561081-79561100 | None:intergenic | 35.0% | |
| TAGTATACACTCAACAACCA+TGG | + | chr1.1:79563682-79563701 | None:intergenic | 35.0% | |
| TCGATATTCTTGTTGGATGT+AGG | + | chr1.1:79561599-79561618 | None:intergenic | 35.0% | |
| TGCAAAAGTTGAAGTGAAGA+TGG | + | chr1.1:79563164-79563183 | None:intergenic | 35.0% | |
| TGTATGGTCTTTCATTGCAA+GGG | + | chr1.1:79561926-79561945 | None:intergenic | 35.0% | |
| TTCTATGGTTTCACAGGATT+TGG | - | chr1.1:79561517-79561536 | MS.gene76197:intron | 35.0% | |
| ! | AACCATGCAGGTATTGTATA+AGG | - | chr1.1:79563946-79563965 | MS.gene76197:intron | 35.0% |
| ! | ACTTTTCTTCTCGCACTTTT+GGG | - | chr1.1:79564124-79564143 | MS.gene76197:CDS | 35.0% |
| ! | AGTTCATAGGTTTTCCTCAT+AGG | - | chr1.1:79562607-79562626 | MS.gene76197:CDS | 35.0% |
| ! | CAATATGTGGTTCTATTCCA+GGG | - | chr1.1:79561408-79561427 | MS.gene76197:intron | 35.0% |
| ! | CACAAAATCGGCTTATTGTT+AGG | - | chr1.1:79560798-79560817 | MS.gene76197:intron | 35.0% |
| ! | CACACCATAAGAGTTGATTT+CGG | - | chr1.1:79560880-79560899 | MS.gene76197:intron | 35.0% |
| ! | TCAATATGTGGTTCTATTCC+AGG | - | chr1.1:79561407-79561426 | MS.gene76197:intron | 35.0% |
| ! | TGATTAAAAGCATGCAACCT+TGG | + | chr1.1:79560674-79560693 | None:intergenic | 35.0% |
| ! | TGCATGCTTTTAATCATGCA+TGG | - | chr1.1:79560678-79560697 | MS.gene76197:CDS | 35.0% |
| !! | CTAACAATAAGCCGATTTTG+TGG | + | chr1.1:79560800-79560819 | None:intergenic | 35.0% |
| !! | CTTTTTATAGTAGTGTCGGA+TGG | + | chr1.1:79562384-79562403 | None:intergenic | 35.0% |
| !!! | ATGGCCTTGTGACTTTTTTT+AGG | - | chr1.1:79560697-79560716 | MS.gene76197:CDS | 35.0% |
| !!! | CATTTTTTGTGAGGAACAAG+AGG | - | chr1.1:79561247-79561266 | MS.gene76197:intron | 35.0% |
| !!! | TCCAGGAAAGTATTTTGCAA+AGG | - | chr1.1:79563135-79563154 | MS.gene76197:CDS | 35.0% |
| !!! | TGGCCTTGTGACTTTTTTTA+GGG | - | chr1.1:79560698-79560717 | MS.gene76197:CDS | 35.0% |
| !!! | TGTGACTTTTTTTAGGGTTG+TGG | - | chr1.1:79560704-79560723 | MS.gene76197:CDS | 35.0% |
| AAAGCGGGTGAAAAGAAACT+CGG | - | chr1.1:79562857-79562876 | MS.gene76197:intron | 40.0% | |
| AATGGCTAAAAGTGAGTGAG+GGG | + | chr1.1:79561080-79561099 | None:intergenic | 40.0% | |
| AATTGCTGAGAAGGATGCAA+AGG | - | chr1.1:79562826-79562845 | MS.gene76197:intron | 40.0% | |
| ACACTCAACAACCATGGTAA+TGG | + | chr1.1:79563676-79563695 | None:intergenic | 40.0% | |
| AGAGAGAGAGATAGAGAAAG+AGG | + | chr1.1:79560649-79560668 | None:intergenic | 40.0% | |
| AGTCAAATCAAACACTTCGG+GGG | - | chr1.1:79562240-79562259 | MS.gene76197:intron | 40.0% | |
| AGTGCGTGAACAGATTACTT+CGG | + | chr1.1:79562155-79562174 | None:intergenic | 40.0% | |
| ATTGCAAGGGTTGGATTGAT+TGG | + | chr1.1:79561913-79561932 | None:intergenic | 40.0% | |
| CAACTTTACCGTGCTTTCAA+AGG | - | chr1.1:79560620-79560639 | MS.gene76197:CDS | 40.0% | |
| CAATACCTGCATGGTTACAA+AGG | + | chr1.1:79563942-79563961 | None:intergenic | 40.0% | |
| CTGTATGGTCTTTCATTGCA+AGG | + | chr1.1:79561927-79561946 | None:intergenic | 40.0% | |
| GAATATTTCGGATAATGCCC+TGG | + | chr1.1:79561428-79561447 | None:intergenic | 40.0% | |
| GAGAGAGAGATAGAGAAAGA+GGG | + | chr1.1:79560648-79560667 | None:intergenic | 40.0% | |
| GCAGTAAAGAATGAAGCTTC+AGG | - | chr1.1:79563067-79563086 | MS.gene76197:CDS | 40.0% | |
| GGCTTATTGTTAGGCTCATT+GGG | - | chr1.1:79560807-79560826 | MS.gene76197:intron | 40.0% | |
| GTATGGTCACTCATTGAAGA+AGG | - | chr1.1:79562964-79562983 | MS.gene76197:intron | 40.0% | |
| GTGGCATATAACCATTACCA+TGG | - | chr1.1:79563662-79563681 | MS.gene76197:intron | 40.0% | |
| GTGGGCAATTTGTAAGAGTA+GGG | - | chr1.1:79563587-79563606 | MS.gene76197:intron | 40.0% | |
| TAGGCTCATTGGGTTTGATA+AGG | - | chr1.1:79560817-79560836 | MS.gene76197:intron | 40.0% | |
| TGAGCCGAAATCAACTCTTA+TGG | + | chr1.1:79560887-79560906 | None:intergenic | 40.0% | |
| TGCAAAGGTTCTCTACAAAG+CGG | - | chr1.1:79562841-79562860 | MS.gene76197:intron | 40.0% | |
| TGCCTTATACAATACCTGCA+TGG | + | chr1.1:79563951-79563970 | None:intergenic | 40.0% | |
| TGTGGGCAATTTGTAAGAGT+AGG | - | chr1.1:79563586-79563605 | MS.gene76197:intron | 40.0% | |
| TTCAGACTGCTGTTCTACTT+TGG | - | chr1.1:79562053-79562072 | MS.gene76197:intron | 40.0% | |
| TTGTGAGGAACAAGAGGAAA+TGG | - | chr1.1:79561253-79561272 | MS.gene76197:intron | 40.0% | |
| ! | CAAAGTTTTCGCATCCTATG+AGG | + | chr1.1:79562624-79562643 | None:intergenic | 40.0% |
| ! | GACTTTTCTTCTCGCACTTT+TGG | - | chr1.1:79564123-79564142 | MS.gene76197:CDS | 40.0% |
| ! | TGTGTAACTTTTGGTCAAGG+TGG | - | chr1.1:79563643-79563662 | MS.gene76197:intron | 40.0% |
| AACCCTATCCACGATCTGTT+TGG | - | chr1.1:79560939-79560958 | MS.gene76197:intron | 45.0% | |
| AATCCGCCTCTAAGTAGTAG+AGG | - | chr1.1:79562454-79562473 | MS.gene76197:CDS | 45.0% | |
| AGCAATGACCAAACAGATCG+TGG | + | chr1.1:79560950-79560969 | None:intergenic | 45.0% | |
| AGTTGCATCGCATCATCTCT+AGG | + | chr1.1:79560605-79560624 | None:intergenic | 45.0% | |
| ATCCGCCTCTAAGTAGTAGA+GGG | - | chr1.1:79562455-79562474 | MS.gene76197:CDS | 45.0% | |
| CATCAGGAAGTCTCTAGTTG+TGG | - | chr1.1:79562108-79562127 | MS.gene76197:intron | 45.0% | |
| CGGCTTATTGTTAGGCTCAT+TGG | - | chr1.1:79560806-79560825 | MS.gene76197:intron | 45.0% | |
| CTGAAACTTCTGGCAACTAC+AGG | - | chr1.1:79564101-79564120 | MS.gene76197:CDS | 45.0% | |
| GACCAAACAGATCGTGGATA+GGG | + | chr1.1:79560944-79560963 | None:intergenic | 45.0% | |
| GACGTGATGTGGAAATCATC+AGG | - | chr1.1:79562092-79562111 | MS.gene76197:intron | 45.0% | |
| GCAAAGGTTCTCTACAAAGC+GGG | - | chr1.1:79562842-79562861 | MS.gene76197:intron | 45.0% | |
| GCTTTCGAAACGCTTGGTTT+CGG | - | chr1.1:79561636-79561655 | MS.gene76197:CDS | 45.0% | |
| GTTCACCCTCTACTACTTAG+AGG | + | chr1.1:79562463-79562482 | None:intergenic | 45.0% | |
| TCACACCTTTGTAACCATGC+AGG | - | chr1.1:79563934-79563953 | MS.gene76197:intron | 45.0% | |
| TCTATCTCTCTCTCTCTCCA+AGG | - | chr1.1:79560654-79560673 | MS.gene76197:CDS | 45.0% | |
| TCTGTTTGGTCATTGCTACC+AGG | - | chr1.1:79560953-79560972 | MS.gene76197:intron | 45.0% | |
| TGACCAAACAGATCGTGGAT+AGG | + | chr1.1:79560945-79560964 | None:intergenic | 45.0% | |
| TGGTCTTTCATTGCAAGGGT+TGG | + | chr1.1:79561922-79561941 | None:intergenic | 45.0% | |
| TTACTTCGGTAGCAGCTTCA+AGG | + | chr1.1:79562141-79562160 | None:intergenic | 45.0% | |
| ! | ACAGTGTGCTTGTGTTTTCG+AGG | - | chr1.1:79563235-79563254 | MS.gene76197:intron | 45.0% |
| ! | ATCCAATGTGCCACTAATCC+AGG | - | chr1.1:79563118-79563137 | MS.gene76197:CDS | 45.0% |
| ! | ATCGCATCATCTCTAGGAGA+AGG | + | chr1.1:79560599-79560618 | None:intergenic | 45.0% |
| ! | TCGCATCATCTCTAGGAGAA+GGG | + | chr1.1:79560598-79560617 | None:intergenic | 45.0% |
| !! | AGAGGGTACCTTTGAAAGCA+CGG | + | chr1.1:79560631-79560650 | None:intergenic | 45.0% |
| !! | GCAGTTCACTCTGAAACTTC+TGG | - | chr1.1:79564091-79564110 | MS.gene76197:CDS | 45.0% |
| !! | TTCCTGGATTAGTGGCACAT+TGG | + | chr1.1:79563123-79563142 | None:intergenic | 45.0% |
| ACTGACTGCAGCCAAATGTG+CGG | + | chr1.1:79562927-79562946 | None:intergenic | 50.0% | |
| AGAGGAGCTTTCGAAACGCT+TGG | - | chr1.1:79561630-79561649 | MS.gene76197:CDS | 50.0% | |
| ATTTCCACATCACGTCCTGC+AGG | + | chr1.1:79562088-79562107 | None:intergenic | 50.0% | |
| CACCCTCTACTACTTAGAGG+CGG | + | chr1.1:79562460-79562479 | None:intergenic | 50.0% | |
| CACTTCGGGGGATCTTCAAA+AGG | - | chr1.1:79562252-79562271 | MS.gene76197:intron | 50.0% | |
| CGGGGGATCTTCAAAAGGTA+AGG | - | chr1.1:79562257-79562276 | MS.gene76197:intron | 50.0% | |
| GGAGCTGAGTGGAAAGTTAG+AGG | - | chr1.1:79561657-79561676 | MS.gene76197:intron | 50.0% | |
| GGATATATGAAGCGTGACCC+TGG | - | chr1.1:79560999-79561018 | MS.gene76197:intron | 50.0% | |
| TATATGAAGCGTGACCCTGG+TGG | - | chr1.1:79561002-79561021 | MS.gene76197:intron | 50.0% | |
| TATTAACCTCAGGGCCTTCG+TGG | + | chr1.1:79562802-79562821 | None:intergenic | 50.0% | |
| TTTCCACATCACGTCCTGCA+GGG | + | chr1.1:79562087-79562106 | None:intergenic | 50.0% | |
| ! | CGCATCATCTCTAGGAGAAG+GGG | + | chr1.1:79560597-79560616 | None:intergenic | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+GGG | + | chr1.1:79560596-79560615 | None:intergenic | 50.0% |
| ! | TCTCTAGGAGAAGGGGGAAA+TGG | + | chr1.1:79560590-79560609 | None:intergenic | 50.0% |
| !! | CGTGTGAGTGGAGTTTTGTC+TGG | - | chr1.1:79563824-79563843 | MS.gene76197:intron | 50.0% |
| !! | TGAAAGGAGTGCCGCACATT+TGG | - | chr1.1:79562913-79562932 | MS.gene76197:intron | 50.0% |
| !! | TGTGCTTGTGTTTTCGAGGC+AGG | - | chr1.1:79563239-79563258 | MS.gene76197:intron | 50.0% |
| CTAGGAGAAGGGGGAAATGG+AGG | + | chr1.1:79560587-79560606 | None:intergenic | 55.0% | |
| GACGAGTGCGATGTCTGACA+CGG | - | chr1.1:79563747-79563766 | MS.gene76197:intron | 55.0% | |
| GATGTCTGACACGGAAGACG+TGG | - | chr1.1:79563756-79563775 | MS.gene76197:intron | 55.0% | |
| GTGTCAGACATCGCACTCGT+CGG | + | chr1.1:79563748-79563767 | None:intergenic | 55.0% | |
| TAGATGTGAGAAGGGTGGCC+TGG | + | chr1.1:79560974-79560993 | None:intergenic | 55.0% | |
| ACATCACGTCCTGCAGGGTC+AGG | + | chr1.1:79562082-79562101 | None:intergenic | 60.0% | |
| CGCTTGGTTTCGGAGCTGAG+TGG | - | chr1.1:79561646-79561665 | MS.gene76197:intron | 60.0% | |
| CTTTGGATGCCTGACCCTGC+AGG | - | chr1.1:79562070-79562089 | MS.gene76197:intron | 60.0% | |
| GTAAGTACCCCTCGCCACGA+AGG | - | chr1.1:79562785-79562804 | MS.gene76197:intron | 60.0% | |
| TGACCCTGCAGGACGTGATG+TGG | - | chr1.1:79562081-79562100 | MS.gene76197:intron | 60.0% | |
| ACCTCAGGGCCTTCGTGGCG+AGG | + | chr1.1:79562797-79562816 | None:intergenic | 70.0% | |
| CCTCAGGGCCTTCGTGGCGA+GGG | + | chr1.1:79562796-79562815 | None:intergenic | 70.0% | |
| CTCAGGGCCTTCGTGGCGAG+GGG | + | chr1.1:79562795-79562814 | None:intergenic | 70.0% | |
| CCCTCGCCACGAAGGCCCTG+AGG | - | chr1.1:79562793-79562812 | MS.gene76197:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79560566 | 79564159 | 79560566 | ID=MS.gene76197 |
| chr1.1 | mRNA | 79560566 | 79564159 | 79560566 | ID=MS.gene76197.t1;Parent=MS.gene76197 |
| chr1.1 | exon | 79564084 | 79564159 | 79564084 | ID=MS.gene76197.t1.exon1;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79564084 | 79564159 | 79564084 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| chr1.1 | exon | 79563047 | 79563192 | 79563047 | ID=MS.gene76197.t1.exon2;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79563047 | 79563192 | 79563047 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| chr1.1 | exon | 79562452 | 79562667 | 79562452 | ID=MS.gene76197.t1.exon3;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79562452 | 79562667 | 79562452 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| chr1.1 | exon | 79561740 | 79561955 | 79561740 | ID=MS.gene76197.t1.exon4;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79561740 | 79561955 | 79561740 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| chr1.1 | exon | 79561569 | 79561658 | 79561569 | ID=MS.gene76197.t1.exon5;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79561569 | 79561658 | 79561569 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| chr1.1 | exon | 79560566 | 79560769 | 79560566 | ID=MS.gene76197.t1.exon6;Parent=MS.gene76197.t1 |
| chr1.1 | CDS | 79560566 | 79560769 | 79560566 | ID=cds.MS.gene76197.t1;Parent=MS.gene76197.t1 |
| Gene Sequence |
| Protein sequence |
