Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79071.t1 | XP_013459165.1 | 93.8 | 389 | 24 | 0 | 1 | 389 | 1 | 389 | 4.00E-203 | 717.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79071.t1 | O22342 | 82.9 | 391 | 59 | 4 | 2 | 389 | 1 | 386 | 2.0e-179 | 629.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79071.t1 | A0A072UTP5 | 93.8 | 389 | 24 | 0 | 1 | 389 | 5 | 393 | 2.9e-203 | 717.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057845 | MS.gene79071 | PPI |
| MS.gene37419 | MS.gene79071 | PPI |
| MS.gene79071 | MS.gene93756 | PPI |
| MS.gene51070 | MS.gene79071 | PPI |
| MS.gene79071 | MS.gene045584 | PPI |
| MS.gene79071 | MS.gene046998 | PPI |
| MS.gene79071 | MS.gene037500 | PPI |
| MS.gene79071 | MS.gene040118 | PPI |
| MS.gene79071 | MS.gene78433 | PPI |
| MS.gene79071 | MS.gene82276 | PPI |
| MS.gene79071 | MS.gene031696 | PPI |
| MS.gene79071 | MS.gene006614 | PPI |
| MS.gene79071 | MS.gene065946 | PPI |
| MS.gene79071 | MS.gene015010 | PPI |
| MS.gene79071 | MS.gene037505 | PPI |
| MS.gene79071 | MS.gene60471 | PPI |
| MS.gene79071 | MS.gene016690 | PPI |
| MS.gene79071 | MS.gene94558 | PPI |
| MS.gene79071 | MS.gene32809 | PPI |
| MS.gene79071 | MS.gene77337 | PPI |
| MS.gene79071 | MS.gene23588 | PPI |
| MS.gene79071 | MS.gene46786 | PPI |
| MS.gene79071 | MS.gene84203 | PPI |
| MS.gene79071 | MS.gene012807 | PPI |
| MS.gene065947 | MS.gene79071 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79071.t1 | MTR_3g028590 | 98.715 | 389 | 5 | 0 | 1 | 389 | 5 | 393 | 0.0 | 788 |
| MS.gene79071.t1 | MTR_3g028590 | 98.715 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene79071.t1 | MTR_8g036880 | 81.538 | 390 | 46 | 4 | 1 | 389 | 35 | 399 | 0.0 | 608 |
| MS.gene79071.t1 | MTR_4g078545 | 75.128 | 390 | 75 | 3 | 1 | 388 | 1 | 370 | 0.0 | 546 |
| MS.gene79071.t1 | MTR_2g098070 | 74.167 | 360 | 84 | 4 | 35 | 389 | 7 | 362 | 2.20e-177 | 498 |
| MS.gene79071.t1 | MTR_8g107270 | 59.649 | 285 | 115 | 0 | 92 | 376 | 17 | 301 | 8.12e-128 | 370 |
| MS.gene79071.t1 | MTR_3g104500 | 39.865 | 296 | 167 | 6 | 87 | 376 | 28 | 318 | 5.97e-68 | 218 |
| MS.gene79071.t1 | MTR_3g104600 | 32.039 | 309 | 176 | 9 | 89 | 376 | 31 | 326 | 4.43e-36 | 135 |
| MS.gene79071.t1 | MTR_6g091800 | 28.713 | 303 | 187 | 7 | 89 | 376 | 15 | 303 | 1.24e-32 | 125 |
| MS.gene79071.t1 | MTR_6g091800 | 29.213 | 267 | 163 | 6 | 89 | 344 | 15 | 266 | 6.71e-29 | 114 |
| MS.gene79071.t1 | MTR_6g091800 | 27.245 | 323 | 190 | 7 | 89 | 376 | 15 | 327 | 9.55e-29 | 115 |
| MS.gene79071.t1 | MTR_5g009500 | 28.707 | 317 | 173 | 10 | 81 | 363 | 24 | 321 | 7.93e-28 | 112 |
| MS.gene79071.t1 | MTR_8g027975 | 29.530 | 298 | 173 | 9 | 92 | 363 | 50 | 336 | 8.48e-28 | 112 |
| MS.gene79071.t1 | MTR_8g027975 | 26.108 | 203 | 131 | 5 | 96 | 285 | 157 | 353 | 7.69e-11 | 63.5 |
| MS.gene79071.t1 | MTR_6g091800 | 30.204 | 245 | 154 | 4 | 89 | 326 | 15 | 249 | 1.34e-27 | 110 |
| MS.gene79071.t1 | MTR_7g064980 | 29.236 | 301 | 194 | 8 | 90 | 379 | 22 | 314 | 3.16e-27 | 110 |
| MS.gene79071.t1 | MTR_6g091800 | 27.273 | 308 | 180 | 6 | 89 | 362 | 15 | 312 | 4.20e-27 | 110 |
| MS.gene79071.t1 | MTR_1g012030 | 30.314 | 287 | 162 | 11 | 93 | 368 | 139 | 398 | 2.41e-26 | 109 |
| MS.gene79071.t1 | MTR_1g012030 | 27.143 | 210 | 132 | 6 | 81 | 286 | 219 | 411 | 3.26e-14 | 73.9 |
| MS.gene79071.t1 | MTR_3g107510 | 28.881 | 277 | 173 | 8 | 96 | 368 | 125 | 381 | 1.06e-25 | 107 |
| MS.gene79071.t1 | MTR_3g107510 | 28.095 | 210 | 130 | 6 | 81 | 286 | 202 | 394 | 1.50e-15 | 78.2 |
| MS.gene79071.t1 | MTR_6g091800 | 27.491 | 291 | 161 | 7 | 89 | 344 | 15 | 290 | 4.09e-25 | 104 |
| MS.gene79071.t1 | MTR_8g096050 | 29.268 | 287 | 169 | 9 | 93 | 368 | 227 | 490 | 5.59e-25 | 106 |
| MS.gene79071.t1 | MTR_4g119770 | 26.748 | 329 | 194 | 8 | 83 | 375 | 4 | 321 | 6.75e-25 | 104 |
| MS.gene79071.t1 | MTR_7g084400 | 30.000 | 290 | 160 | 8 | 93 | 368 | 213 | 473 | 1.05e-24 | 105 |
| MS.gene79071.t1 | MTR_7g068340 | 29.329 | 283 | 169 | 8 | 104 | 379 | 98 | 356 | 1.31e-24 | 104 |
| MS.gene79071.t1 | MTR_5g081150 | 26.471 | 306 | 208 | 7 | 83 | 379 | 24 | 321 | 4.84e-24 | 101 |
| MS.gene79071.t1 | MTR_6g091800 | 28.253 | 269 | 152 | 5 | 89 | 326 | 15 | 273 | 8.37e-24 | 100 |
| MS.gene79071.t1 | MTR_4g114320 | 27.465 | 284 | 174 | 7 | 93 | 368 | 123 | 382 | 1.09e-23 | 102 |
| MS.gene79071.t1 | MTR_4g114320 | 27.751 | 209 | 127 | 6 | 83 | 286 | 206 | 395 | 2.57e-14 | 74.3 |
| MS.gene79071.t1 | MTR_3g098460 | 28.053 | 303 | 181 | 11 | 77 | 368 | 192 | 468 | 4.24e-23 | 100 |
| MS.gene79071.t1 | MTR_2g436930 | 27.358 | 318 | 186 | 9 | 90 | 373 | 12 | 318 | 1.09e-22 | 97.8 |
| MS.gene79071.t1 | MTR_6g034145 | 28.340 | 247 | 163 | 5 | 141 | 376 | 6 | 249 | 1.47e-22 | 96.3 |
| MS.gene79071.t1 | MTR_6g091800 | 31.148 | 183 | 110 | 3 | 89 | 264 | 15 | 188 | 1.62e-22 | 94.4 |
| MS.gene79071.t1 | MTR_4g016730 | 29.191 | 346 | 203 | 13 | 40 | 379 | 46 | 355 | 2.84e-22 | 97.4 |
| MS.gene79071.t1 | MTR_6g092210 | 28.216 | 241 | 165 | 5 | 141 | 376 | 6 | 243 | 4.74e-22 | 94.7 |
| MS.gene79071.t1 | MTR_4g119770 | 26.592 | 267 | 160 | 6 | 83 | 324 | 4 | 259 | 2.07e-19 | 87.4 |
| MS.gene79071.t1 | MTR_6g091800 | 28.502 | 207 | 108 | 4 | 89 | 264 | 15 | 212 | 1.19e-18 | 84.3 |
| MS.gene79071.t1 | MTR_4g005330 | 24.333 | 300 | 185 | 7 | 90 | 368 | 63 | 341 | 9.17e-18 | 84.3 |
| MS.gene79071.t1 | MTR_3g074490 | 27.946 | 297 | 166 | 12 | 96 | 368 | 119 | 391 | 2.21e-17 | 83.6 |
| MS.gene79071.t1 | MTR_1g090330 | 21.805 | 266 | 196 | 4 | 93 | 354 | 14 | 271 | 1.06e-16 | 80.5 |
| MS.gene79071.t1 | MTR_1g090330 | 28.571 | 168 | 112 | 4 | 94 | 260 | 112 | 272 | 6.83e-13 | 69.3 |
| MS.gene79071.t1 | MTR_4g005330 | 24.150 | 294 | 181 | 7 | 96 | 368 | 3 | 275 | 1.07e-16 | 80.1 |
| MS.gene79071.t1 | MTR_2g102010 | 25.524 | 286 | 196 | 6 | 92 | 373 | 16 | 288 | 1.65e-16 | 79.7 |
| MS.gene79071.t1 | MTR_4g012850 | 27.160 | 243 | 163 | 5 | 138 | 373 | 51 | 286 | 2.67e-16 | 79.3 |
| MS.gene79071.t1 | MTR_3g100570 | 26.174 | 298 | 179 | 10 | 93 | 361 | 6 | 291 | 2.90e-16 | 79.3 |
| MS.gene79071.t1 | MTR_5g030530 | 26.502 | 283 | 187 | 9 | 92 | 363 | 7 | 279 | 1.06e-15 | 77.4 |
| MS.gene79071.t1 | MTR_6g091910 | 26.866 | 201 | 136 | 5 | 89 | 285 | 15 | 208 | 2.04e-15 | 75.1 |
| MS.gene79071.t1 | MTR_8g066975 | 26.316 | 285 | 185 | 9 | 92 | 363 | 7 | 279 | 2.66e-15 | 76.3 |
| MS.gene79071.t1 | MTR_7g084400 | 31.122 | 196 | 109 | 5 | 93 | 282 | 207 | 382 | 3.88e-15 | 77.0 |
| MS.gene79071.t1 | MTR_7g066690 | 24.632 | 272 | 188 | 7 | 89 | 354 | 13 | 273 | 5.57e-14 | 72.4 |
| MS.gene79071.t1 | MTR_5g081150 | 28.966 | 145 | 97 | 2 | 83 | 223 | 24 | 166 | 9.52e-14 | 70.9 |
| MS.gene79071.t1 | MTR_5g081150 | 28.966 | 145 | 97 | 2 | 83 | 223 | 24 | 166 | 1.19e-13 | 70.9 |
| MS.gene79071.t1 | MTR_4g018750 | 25.092 | 271 | 182 | 9 | 99 | 361 | 21 | 278 | 3.77e-13 | 70.1 |
| MS.gene79071.t1 | MTR_2g436930 | 29.231 | 195 | 111 | 5 | 200 | 373 | 40 | 228 | 7.42e-13 | 68.2 |
| MS.gene79071.t1 | MTR_8g090210 | 23.649 | 296 | 180 | 10 | 96 | 368 | 113 | 385 | 2.16e-12 | 68.6 |
| MS.gene79071.t1 | MTR_5g032420 | 21.739 | 299 | 200 | 6 | 93 | 361 | 6 | 300 | 1.39e-11 | 65.5 |
| MS.gene79071.t1 | MTR_4g018750 | 24.609 | 256 | 172 | 9 | 99 | 346 | 21 | 263 | 4.01e-11 | 63.5 |
| MS.gene79071.t1 | MTR_1g088995 | 24.444 | 270 | 177 | 7 | 92 | 354 | 32 | 281 | 6.24e-11 | 63.5 |
| MS.gene79071.t1 | MTR_3g462140 | 24.296 | 284 | 191 | 8 | 89 | 362 | 11 | 280 | 9.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79071.t1 | AT5G13490 | 80.662 | 393 | 64 | 5 | 1 | 389 | 1 | 385 | 0.0 | 607 |
| MS.gene79071.t1 | AT5G13490 | 80.662 | 393 | 64 | 5 | 1 | 389 | 1 | 385 | 0.0 | 607 |
| MS.gene79071.t1 | AT3G08580 | 81.934 | 393 | 55 | 6 | 1 | 389 | 1 | 381 | 0.0 | 588 |
| MS.gene79071.t1 | AT3G08580 | 81.934 | 393 | 55 | 6 | 1 | 389 | 1 | 381 | 0.0 | 588 |
| MS.gene79071.t1 | AT4G28390 | 74.680 | 391 | 82 | 4 | 2 | 388 | 1 | 378 | 0.0 | 547 |
| MS.gene79071.t1 | AT4G28390 | 74.680 | 391 | 82 | 4 | 2 | 388 | 1 | 378 | 0.0 | 547 |
| MS.gene79071.t1 | AT5G17400 | 58.804 | 301 | 124 | 0 | 80 | 380 | 1 | 301 | 8.34e-130 | 375 |
| MS.gene79071.t1 | AT5G56450 | 39.482 | 309 | 168 | 7 | 80 | 376 | 21 | 322 | 1.21e-66 | 214 |
| MS.gene79071.t1 | AT1G14560 | 30.605 | 281 | 169 | 6 | 104 | 368 | 38 | 308 | 2.26e-33 | 127 |
| MS.gene79071.t1 | AT3G55640 | 28.037 | 321 | 213 | 7 | 58 | 368 | 1 | 313 | 4.13e-33 | 126 |
| MS.gene79071.t1 | AT3G55640 | 28.037 | 321 | 213 | 7 | 58 | 368 | 1 | 313 | 4.13e-33 | 126 |
| MS.gene79071.t1 | AT1G14560 | 30.909 | 275 | 164 | 6 | 104 | 362 | 38 | 302 | 1.59e-32 | 124 |
| MS.gene79071.t1 | AT2G37890 | 30.303 | 297 | 190 | 7 | 92 | 379 | 44 | 332 | 2.54e-32 | 124 |
| MS.gene79071.t1 | AT4G26180 | 31.596 | 307 | 176 | 9 | 89 | 377 | 17 | 307 | 4.21e-32 | 124 |
| MS.gene79071.t1 | AT4G26180 | 32.302 | 291 | 164 | 8 | 89 | 362 | 17 | 291 | 4.39e-31 | 120 |
| MS.gene79071.t1 | AT3G53940 | 29.492 | 295 | 188 | 8 | 85 | 368 | 63 | 348 | 9.77e-29 | 115 |
| MS.gene79071.t1 | AT3G53940 | 23.858 | 197 | 138 | 3 | 91 | 287 | 178 | 362 | 1.87e-11 | 65.5 |
| MS.gene79071.t1 | AT3G51870 | 32.979 | 282 | 160 | 9 | 104 | 379 | 102 | 360 | 1.36e-28 | 115 |
| MS.gene79071.t1 | AT4G01100 | 27.922 | 308 | 167 | 9 | 96 | 368 | 45 | 332 | 7.90e-27 | 110 |
| MS.gene79071.t1 | AT5G01500 | 30.466 | 279 | 171 | 9 | 104 | 379 | 130 | 388 | 3.78e-26 | 109 |
| MS.gene79071.t1 | AT4G32400 | 29.893 | 281 | 171 | 9 | 93 | 368 | 114 | 373 | 1.95e-25 | 106 |
| MS.gene79071.t1 | AT4G01100 | 28.115 | 313 | 174 | 9 | 96 | 368 | 45 | 346 | 3.70e-25 | 105 |
| MS.gene79071.t1 | AT4G01100 | 27.152 | 302 | 165 | 9 | 102 | 368 | 1 | 282 | 9.63e-25 | 103 |
| MS.gene79071.t1 | AT3G21390 | 26.935 | 323 | 197 | 7 | 83 | 373 | 9 | 324 | 9.73e-24 | 101 |
| MS.gene79071.t1 | AT5G51050 | 30.175 | 285 | 166 | 7 | 93 | 368 | 223 | 483 | 9.86e-24 | 103 |
| MS.gene79071.t1 | AT3G21390 | 26.935 | 323 | 197 | 7 | 83 | 373 | 31 | 346 | 1.27e-23 | 101 |
| MS.gene79071.t1 | AT5G61810 | 28.041 | 296 | 182 | 8 | 77 | 368 | 52 | 320 | 1.35e-23 | 100 |
| MS.gene79071.t1 | AT5G61810 | 28.041 | 296 | 182 | 8 | 77 | 368 | 195 | 463 | 1.13e-22 | 99.8 |
| MS.gene79071.t1 | AT1G14560 | 31.915 | 188 | 111 | 4 | 197 | 368 | 24 | 210 | 2.37e-22 | 95.1 |
| MS.gene79071.t1 | AT3G55640 | 27.481 | 262 | 171 | 6 | 58 | 312 | 1 | 250 | 4.41e-22 | 94.7 |
| MS.gene79071.t1 | AT3G55640 | 27.481 | 262 | 171 | 6 | 58 | 312 | 1 | 250 | 4.41e-22 | 94.7 |
| MS.gene79071.t1 | AT3G20240 | 24.585 | 301 | 191 | 6 | 86 | 368 | 45 | 327 | 2.13e-21 | 94.7 |
| MS.gene79071.t1 | AT5G48970 | 27.160 | 324 | 196 | 10 | 83 | 373 | 12 | 328 | 2.25e-21 | 94.4 |
| MS.gene79071.t1 | AT5G07320 | 27.407 | 270 | 170 | 7 | 102 | 368 | 218 | 464 | 1.65e-20 | 93.6 |
| MS.gene79071.t1 | AT3G53940 | 29.167 | 216 | 137 | 5 | 85 | 293 | 63 | 269 | 1.12e-18 | 85.9 |
| MS.gene79071.t1 | AT5G48970 | 26.641 | 259 | 157 | 8 | 141 | 373 | 6 | 257 | 8.26e-15 | 74.3 |
| MS.gene79071.t1 | AT5G64970 | 27.119 | 295 | 171 | 11 | 96 | 368 | 138 | 410 | 9.32e-15 | 75.9 |
| MS.gene79071.t1 | AT1G14140 | 23.507 | 268 | 190 | 6 | 93 | 354 | 16 | 274 | 1.76e-14 | 73.9 |
| MS.gene79071.t1 | AT1G14140 | 28.061 | 196 | 127 | 5 | 198 | 383 | 18 | 209 | 1.16e-11 | 65.5 |
| MS.gene79071.t1 | AT5G64970 | 26.441 | 295 | 173 | 11 | 96 | 368 | 14 | 286 | 3.90e-14 | 72.8 |
| MS.gene79071.t1 | AT5G64970 | 27.431 | 288 | 165 | 11 | 96 | 361 | 138 | 403 | 8.41e-14 | 72.8 |
| MS.gene79071.t1 | AT5G46800 | 26.224 | 286 | 187 | 8 | 92 | 363 | 7 | 282 | 1.20e-13 | 71.6 |
| MS.gene79071.t1 | AT5G46800 | 26.224 | 286 | 187 | 8 | 92 | 363 | 7 | 282 | 1.20e-13 | 71.6 |
| MS.gene79071.t1 | AT5G46800 | 26.224 | 286 | 187 | 8 | 92 | 363 | 7 | 282 | 1.20e-13 | 71.6 |
| MS.gene79071.t1 | AT5G58970 | 24.055 | 291 | 192 | 8 | 83 | 361 | 6 | 279 | 2.69e-13 | 70.5 |
| MS.gene79071.t1 | AT2G33820 | 23.404 | 282 | 201 | 5 | 89 | 362 | 14 | 288 | 5.39e-13 | 69.7 |
| MS.gene79071.t1 | AT5G66380 | 26.829 | 205 | 126 | 6 | 191 | 383 | 5 | 197 | 2.89e-12 | 67.4 |
| MS.gene79071.t1 | AT3G54110 | 22.761 | 268 | 190 | 8 | 93 | 354 | 15 | 271 | 4.15e-12 | 67.0 |
| MS.gene79071.t1 | AT1G79900 | 25.311 | 241 | 157 | 6 | 140 | 373 | 53 | 277 | 1.80e-11 | 65.1 |
| MS.gene79071.t1 | AT1G78180 | 24.415 | 299 | 174 | 8 | 96 | 368 | 131 | 403 | 1.86e-11 | 65.9 |
| MS.gene79071.t1 | AT4G03115 | 24.101 | 278 | 175 | 8 | 87 | 354 | 32 | 283 | 7.20e-11 | 63.2 |
Find 122 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGCTGGTGTGCTTTC+TGG | 0.149238 | 3.1:-20621671 | MS.gene79071:CDS |
| TGATCATCTCATCCTGGTTT+TGG | 0.179358 | 3.1:+20622636 | None:intergenic |
| CTGGTCTTTCATCTGGATTT+AGG | 0.213706 | 3.1:-20622922 | MS.gene79071:CDS |
| TGGTCTTTCATCTGGATTTA+GGG | 0.236214 | 3.1:-20622921 | MS.gene79071:CDS |
| AATGGGAGCAGCAGCAGTTT+TGG | 0.270825 | 3.1:+20622679 | None:intergenic |
| AACATCCTCCGTGCCGTTGC+TGG | 0.301686 | 3.1:-20621689 | MS.gene79071:CDS |
| AGTTCCCATAGGAGAATCTT+TGG | 0.306546 | 3.1:+20622864 | None:intergenic |
| CGTCGATCTGGTCTTTCATC+TGG | 0.320998 | 3.1:-20622929 | MS.gene79071:CDS |
| CTTAGCTGCCTTAGAATCAT+TGG | 0.323339 | 3.1:+20622231 | None:intergenic |
| CTTGCTACTGATGGAATTGC+TGG | 0.330650 | 3.1:-20622157 | MS.gene79071:CDS |
| AGAAGGACAGGGATGGTTAC+TGG | 0.330831 | 3.1:-20622348 | MS.gene79071:CDS |
| TCTTCTCACTGGAAAATTGC+AGG | 0.333134 | 3.1:-20622047 | MS.gene79071:intron |
| CTCCGTGCCGTTGCTGGTGC+TGG | 0.343034 | 3.1:-20621683 | MS.gene79071:CDS |
| CCTCATTCCTGAGAATTTGT+TGG | 0.348377 | 3.1:+20621744 | None:intergenic |
| CTTCTCCTAACAGTGTCAAT+TGG | 0.350865 | 3.1:+20621821 | None:intergenic |
| ACAATCACCAATACCCTTGT+AGG | 0.369255 | 3.1:+20622592 | None:intergenic |
| ATGAGGGTGTTGTTGCTCTC+TGG | 0.371630 | 3.1:-20622550 | MS.gene79071:CDS |
| ACCTCCAGATGCCAAGTTAC+CGG | 0.389000 | 3.1:+20622315 | None:intergenic |
| GTGACCTTCTCCATGATTGT+TGG | 0.389407 | 3.1:+20622965 | None:intergenic |
| CAAAAGCTTAATACGTTCAA+TGG | 0.391915 | 3.1:+20622661 | None:intergenic |
| TCGTCTTGCCAATGATTCTA+AGG | 0.397580 | 3.1:-20622239 | MS.gene79071:CDS |
| ACAGGGATGGTTACTGGAAA+TGG | 0.399761 | 3.1:-20622342 | MS.gene79071:CDS |
| GGCCAGCTCCACCGTCGATC+TGG | 0.401808 | 3.1:-20622941 | MS.gene79071:CDS |
| ATGCATTCCAACAAATTCTC+AGG | 0.412707 | 3.1:-20621751 | MS.gene79071:CDS |
| TTCTGGTTACGACAAGTTGC+AGG | 0.414142 | 3.1:-20621654 | MS.gene79071:CDS |
| GAAAGCAACCATGGTTGATC+AGG | 0.420030 | 3.1:-20622996 | None:intergenic |
| TTGGCATCTGGAGGTGCTGC+TGG | 0.420414 | 3.1:-20622307 | MS.gene79071:CDS |
| TTCTCCTAACAGTGTCAATT+GGG | 0.434457 | 3.1:+20621822 | None:intergenic |
| CTCAAACCTGTTCTTCTCAC+TGG | 0.437345 | 3.1:-20622058 | MS.gene79071:CDS |
| TTTCGTTATTGACTTTCTCA+TGG | 0.438686 | 3.1:-20622723 | MS.gene79071:CDS |
| CTTGTGTTCGGCAAGAAATA+CGG | 0.440747 | 3.1:-20621629 | MS.gene79071:CDS |
| AAGTTGCAGGTTCTTGTGTT+CGG | 0.444616 | 3.1:-20621641 | MS.gene79071:CDS |
| TTTGCCGGTAACTTGGCATC+TGG | 0.445959 | 3.1:-20622319 | MS.gene79071:CDS |
| CATACCCAATTGACACTGTT+AGG | 0.447208 | 3.1:-20621826 | MS.gene79071:CDS |
| GAGCCATCCAAGCGCAAAGC+TGG | 0.450450 | 3.1:+20621874 | None:intergenic |
| GGTTACTGGAAATGGTTTGC+CGG | 0.452634 | 3.1:-20622334 | MS.gene79071:CDS |
| GAAATGGTTTGCCGGTAACT+TGG | 0.453917 | 3.1:-20622326 | MS.gene79071:CDS |
| AGAAGAATGATGATGACATC+TGG | 0.454405 | 3.1:-20621803 | MS.gene79071:CDS |
| CAGTGAGAAGAACAGGTTTG+AGG | 0.454558 | 3.1:+20622059 | None:intergenic |
| AGTGAGAAGAACAGGTTTGA+GGG | 0.454604 | 3.1:+20622060 | None:intergenic |
| GACCAGATCGACGGTGGAGC+TGG | 0.454977 | 3.1:+20622939 | None:intergenic |
| TGAGAAAGTCAATAACGAAA+TGG | 0.456385 | 3.1:+20622726 | None:intergenic |
| TCGCCAGCTTTGCGCTTGGA+TGG | 0.458299 | 3.1:-20621877 | MS.gene79071:CDS |
| GCTGGAGCAGCGACGAAGAC+GGG | 0.467128 | 3.1:+20622758 | None:intergenic |
| CACCAGCACCAGCAACGGCA+CGG | 0.468876 | 3.1:+20621681 | None:intergenic |
| GTTCCCATAGGAGAATCTTT+GGG | 0.471265 | 3.1:+20622865 | None:intergenic |
| TCTGGATTTAGGGGTTATGA+AGG | 0.477435 | 3.1:-20622911 | MS.gene79071:CDS |
| ATCATTGGCAAGACGAGTAC+GGG | 0.477887 | 3.1:+20622246 | None:intergenic |
| ATCAACAGTTGCCCTGCAAG+TGG | 0.483410 | 3.1:+20622808 | None:intergenic |
| TCTGAGCCCTACAAGGGTAT+TGG | 0.488103 | 3.1:-20622599 | MS.gene79071:CDS |
| AAAAGCTTAATACGTTCAAT+GGG | 0.489695 | 3.1:+20622662 | None:intergenic |
| ATGTCCCAAAGATTCTCCTA+TGG | 0.492338 | 3.1:-20622869 | MS.gene79071:CDS |
| GGTTTCAACATCTCCTGTGT+TGG | 0.492793 | 3.1:-20622124 | MS.gene79071:CDS |
| TTCGTTATTGACTTTCTCAT+GGG | 0.493555 | 3.1:-20622722 | MS.gene79071:CDS |
| CCAACAAATTCTCAGGAATG+AGG | 0.495181 | 3.1:-20621744 | MS.gene79071:CDS |
| CAGGATGAGATGATCAAGTC+TGG | 0.496357 | 3.1:-20622629 | MS.gene79071:CDS |
| AAGCACACCAGCACCAGCAA+CGG | 0.501311 | 3.1:+20621676 | None:intergenic |
| GGGTGCTAAGTCATTGTTCA+AGG | 0.502290 | 3.1:-20621723 | MS.gene79071:CDS |
| AATCATTGGCAAGACGAGTA+CGG | 0.503375 | 3.1:+20622245 | None:intergenic |
| GTCTACCGTGGTCTGTACTT+CGG | 0.505449 | 3.1:-20622094 | MS.gene79071:CDS |
| AAGAAGACTCTTGCTACTGA+TGG | 0.508472 | 3.1:-20622166 | MS.gene79071:CDS |
| TAAAAGAACAATGGCTGATG+AGG | 0.509418 | 3.1:-20622567 | MS.gene79071:CDS |
| TAACCTGAGTGGGGAAATAA+CGG | 0.511945 | 3.1:+20622504 | None:intergenic |
| ACAATCATGGAGAAGGTCAC+TGG | 0.514525 | 3.1:-20622962 | MS.gene79071:CDS |
| AGAAAACAACTAACCTGAGT+GGG | 0.518937 | 3.1:+20622494 | None:intergenic |
| TTCGGCAAGAAATACGGATC+TGG | 0.519522 | 3.1:-20621623 | MS.gene79071:CDS |
| CAGACTTGATCATCTCATCC+TGG | 0.520517 | 3.1:+20622630 | None:intergenic |
| AAGTCATTGTTCAAGGGAGC+TGG | 0.521554 | 3.1:-20621716 | MS.gene79071:CDS |
| GGTTAAGCAACCAACAATCA+TGG | 0.524656 | 3.1:-20622975 | MS.gene79071:CDS |
| TGATGCTAGACCTGCACCAT+TGG | 0.527310 | 3.1:+20621847 | None:intergenic |
| CAACAGTTGCCCTGCAAGTG+GGG | 0.528651 | 3.1:+20622810 | None:intergenic |
| TGGCTCATTACCAATGGTGC+AGG | 0.529441 | 3.1:-20621857 | MS.gene79071:CDS |
| TAGGCTCTCTGAGCCCTACA+AGG | 0.529504 | 3.1:-20622606 | MS.gene79071:CDS |
| GGTCTTTCATCTGGATTTAG+GGG | 0.530879 | 3.1:-20622920 | MS.gene79071:CDS |
| CATTCAAAGATTACTTCAAG+AGG | 0.536246 | 3.1:-20622384 | MS.gene79071:CDS |
| GATTCTAAGGCAGCTAAGAA+AGG | 0.539062 | 3.1:-20622226 | MS.gene79071:CDS |
| CAGCTAAGAAAGGTGGAGAA+AGG | 0.539801 | 3.1:-20622216 | MS.gene79071:CDS |
| GCCGGTAACTTGGCATCTGG+AGG | 0.547072 | 3.1:-20622316 | MS.gene79071:CDS |
| GAGAATCTTTGGGACATGGC+AGG | 0.547914 | 3.1:+20622875 | None:intergenic |
| GTTATTGACTTTCTCATGGG+TGG | 0.552168 | 3.1:-20622719 | MS.gene79071:CDS |
| TTGCTACTGATGGAATTGCT+GGG | 0.552525 | 3.1:-20622156 | MS.gene79071:CDS |
| TCAACAGTTGCCCTGCAAGT+GGG | 0.556580 | 3.1:+20622809 | None:intergenic |
| AATTTGTTGGAATGCATCAA+AGG | 0.558728 | 3.1:+20621757 | None:intergenic |
| AAAAGAACAATGGCTGATGA+GGG | 0.560769 | 3.1:-20622566 | MS.gene79071:CDS |
| GGACATGGCAGGATGGCGGT+AGG | 0.563819 | 3.1:+20622886 | None:intergenic |
| TGTCCCAAAGATTCTCCTAT+GGG | 0.564873 | 3.1:-20622868 | MS.gene79071:CDS |
| TATCCGTTATTTCCCCACTC+AGG | 0.571053 | 3.1:-20622507 | MS.gene79071:intron |
| GGTGGAGAAAGGCAGTTCAA+TGG | 0.572074 | 3.1:-20622205 | MS.gene79071:CDS |
| CAACAAATTCTCAGGAATGA+GGG | 0.575424 | 3.1:-20621743 | MS.gene79071:CDS |
| TAGAAAACAACTAACCTGAG+TGG | 0.579173 | 3.1:+20622493 | None:intergenic |
| CTTGGATGGCTCATTACCAA+TGG | 0.580145 | 3.1:-20621863 | MS.gene79071:CDS |
| CAATCACCAATACCCTTGTA+GGG | 0.581476 | 3.1:+20622593 | None:intergenic |
| TGCTGGAGCAGCGACGAAGA+CGG | 0.584125 | 3.1:+20622757 | None:intergenic |
| AACAGTTGCCCTGCAAGTGG+GGG | 0.584275 | 3.1:+20622811 | None:intergenic |
| ATGAGATGATCAAGTCTGGT+AGG | 0.599652 | 3.1:-20622625 | MS.gene79071:CDS |
| CAAGAGAGTAAACAAACAAG+AGG | 0.602030 | 3.1:+20622275 | None:intergenic |
| ATCTTTGGGACATGGCAGGA+TGG | 0.604045 | 3.1:+20622879 | None:intergenic |
| GGTGTTGTTGCTCTCTGGAG+AGG | 0.606867 | 3.1:-20622545 | MS.gene79071:CDS |
| AACTTCAAGAAGGACAGGGA+TGG | 0.606997 | 3.1:-20622355 | MS.gene79071:CDS |
| CGCTGCATTGCAGAATCCAA+TGG | 0.607456 | 3.1:-20622834 | MS.gene79071:CDS |
| GCAACCAACAATCATGGAGA+AGG | 0.628211 | 3.1:-20622969 | MS.gene79071:CDS |
| GGCAAGAAATACGGATCTGG+TGG | 0.628657 | 3.1:-20621620 | MS.gene79071:CDS |
| TCTAAGGCAGCTAAGAAAGG+TGG | 0.629619 | 3.1:-20622223 | MS.gene79071:CDS |
| GTAAACAAACAAGAGGGATG+AGG | 0.631365 | 3.1:+20622282 | None:intergenic |
| CACAGGAGATGTTGAAACCA+CGG | 0.633206 | 3.1:+20622128 | None:intergenic |
| ATAGGAGAATCTTTGGGACA+TGG | 0.635000 | 3.1:+20622871 | None:intergenic |
| TTTCAACTTCAAGAAGGACA+GGG | 0.637221 | 3.1:-20622359 | MS.gene79071:CDS |
| GGTGCTAAGTCATTGTTCAA+GGG | 0.642143 | 3.1:-20621722 | MS.gene79071:CDS |
| ATGAAAGACCAGATCGACGG+TGG | 0.650139 | 3.1:+20622933 | None:intergenic |
| GGAATTGCTGGGCTTTACCG+TGG | 0.654046 | 3.1:-20622145 | MS.gene79071:CDS |
| AAGAGAGTAAACAAACAAGA+GGG | 0.655445 | 3.1:+20622276 | None:intergenic |
| GTAGACAATGATTCCAACAC+AGG | 0.657927 | 3.1:+20622111 | None:intergenic |
| GGGGAAATAACGGATAACAT+TGG | 0.658006 | 3.1:+20622514 | None:intergenic |
| AGCGTTTGAGTAGTTCCCAT+AGG | 0.663946 | 3.1:+20622853 | None:intergenic |
| CAGATGAAAGACCAGATCGA+CGG | 0.667445 | 3.1:+20622930 | None:intergenic |
| CAGCACCAGCAACGGCACGG+AGG | 0.668727 | 3.1:+20621684 | None:intergenic |
| GAAAACAACTAACCTGAGTG+GGG | 0.671762 | 3.1:+20622495 | None:intergenic |
| TTGCTTAACCTGATCAACCA+TGG | 0.675233 | 3.1:+20622988 | None:intergenic |
| AGGCTCTCTGAGCCCTACAA+GGG | 0.676799 | 3.1:-20622605 | MS.gene79071:CDS |
| TTTGGGACATGGCAGGATGG+CGG | 0.679753 | 3.1:+20622882 | None:intergenic |
| GTTGGAATCATTGTCTACCG+TGG | 0.700486 | 3.1:-20622106 | MS.gene79071:CDS |
| ACAATCCGAAGTACAGACCA+CGG | 0.718426 | 3.1:+20622089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGCTATTTAAATTGTTTT+AGG | - | chr3.1:20622180-20622199 | MS.gene79071:CDS | 15.0% |
| !! | AATGAATATCATTTGTTCAA+AGG | + | chr3.1:20622591-20622610 | None:intergenic | 20.0% |
| !! | ATGAATATCATTTGTTCAAA+GGG | + | chr3.1:20622590-20622609 | None:intergenic | 20.0% |
| !! | TGCAACGAAAAATAATAATT+TGG | + | chr3.1:20622618-20622637 | None:intergenic | 20.0% |
| !!! | TGATTGTTTTAAAAGAACAA+TGG | - | chr3.1:20622023-20622042 | MS.gene79071:intron | 20.0% |
| ! | AAAAGCTTAATACGTTCAAT+GGG | + | chr3.1:20621940-20621959 | None:intergenic | 25.0% |
| ! | CACATTAAATACACAACAAT+TGG | + | chr3.1:20622152-20622171 | None:intergenic | 25.0% |
| AAGAGAGTAAACAAACAAGA+GGG | + | chr3.1:20622326-20622345 | None:intergenic | 30.0% | |
| CAAAAGCTTAATACGTTCAA+TGG | + | chr3.1:20621941-20621960 | None:intergenic | 30.0% | |
| CATTCAAAGATTACTTCAAG+AGG | - | chr3.1:20622215-20622234 | MS.gene79071:CDS | 30.0% | |
| TAAATACACAACAATTGGAC+AGG | + | chr3.1:20622147-20622166 | None:intergenic | 30.0% | |
| TGAGAAAGTCAATAACGAAA+TGG | + | chr3.1:20621876-20621895 | None:intergenic | 30.0% | |
| ! | AAATCTAAAGTATCTACCAG+TGG | + | chr3.1:20622647-20622666 | None:intergenic | 30.0% |
| ! | TTTTGAACTCTTGACATTAC+AGG | - | chr3.1:20622690-20622709 | MS.gene79071:CDS | 30.0% |
| !! | AATTTGTTGGAATGCATCAA+AGG | + | chr3.1:20622845-20622864 | None:intergenic | 30.0% |
| !! | TTCGTTATTGACTTTCTCAT+GGG | - | chr3.1:20621877-20621896 | MS.gene79071:CDS | 30.0% |
| !! | TTTCGTTATTGACTTTCTCA+TGG | - | chr3.1:20621876-20621895 | MS.gene79071:CDS | 30.0% |
| AAAAGAACAATGGCTGATGA+GGG | - | chr3.1:20622033-20622052 | MS.gene79071:intron | 35.0% | |
| AGAAAACAACTAACCTGAGT+GGG | + | chr3.1:20622108-20622127 | None:intergenic | 35.0% | |
| AGTTCAAAAGATTTCAGCAG+AGG | + | chr3.1:20622679-20622698 | None:intergenic | 35.0% | |
| ATGCATTCCAACAAATTCTC+AGG | - | chr3.1:20622848-20622867 | MS.gene79071:CDS | 35.0% | |
| CAACAAATTCTCAGGAATGA+GGG | - | chr3.1:20622856-20622875 | MS.gene79071:CDS | 35.0% | |
| CAAGAGAGTAAACAAACAAG+AGG | + | chr3.1:20622327-20622346 | None:intergenic | 35.0% | |
| TAAAAGAACAATGGCTGATG+AGG | - | chr3.1:20622032-20622051 | MS.gene79071:intron | 35.0% | |
| TAGAAAACAACTAACCTGAG+TGG | + | chr3.1:20622109-20622128 | None:intergenic | 35.0% | |
| TGGTCTTTCATCTGGATTTA+GGG | - | chr3.1:20621678-20621697 | MS.gene79071:CDS | 35.0% | |
| TTCTCCTAACAGTGTCAATT+GGG | + | chr3.1:20622780-20622799 | None:intergenic | 35.0% | |
| TTTCAACTTCAAGAAGGACA+GGG | - | chr3.1:20622240-20622259 | MS.gene79071:CDS | 35.0% | |
| ! | AATTTTCCAGTGAGAAGAAC+AGG | + | chr3.1:20622550-20622569 | None:intergenic | 35.0% |
| ! | AGAAGAATGATGATGACATC+TGG | - | chr3.1:20622796-20622815 | MS.gene79071:CDS | 35.0% |
| ! | TAAGCTTTTGATCCAAAACC+AGG | - | chr3.1:20621951-20621970 | MS.gene79071:intron | 35.0% |
| ! | TTTTCAACTTCAAGAAGGAC+AGG | - | chr3.1:20622239-20622258 | MS.gene79071:CDS | 35.0% |
| AAGAAGACTCTTGCTACTGA+TGG | - | chr3.1:20622433-20622452 | MS.gene79071:intron | 40.0% | |
| AAGTTGCAGGTTCTTGTGTT+CGG | - | chr3.1:20622958-20622977 | MS.gene79071:CDS | 40.0% | |
| AATCATTGGCAAGACGAGTA+CGG | + | chr3.1:20622357-20622376 | None:intergenic | 40.0% | |
| ACAATCACCAATACCCTTGT+AGG | + | chr3.1:20622010-20622029 | None:intergenic | 40.0% | |
| AGTGAGAAGAACAGGTTTGA+GGG | + | chr3.1:20622542-20622561 | None:intergenic | 40.0% | |
| AGTTCCCATAGGAGAATCTT+TGG | + | chr3.1:20621738-20621757 | None:intergenic | 40.0% | |
| ATGAGATGATCAAGTCTGGT+AGG | - | chr3.1:20621974-20621993 | MS.gene79071:intron | 40.0% | |
| ATGTCCCAAAGATTCTCCTA+TGG | - | chr3.1:20621730-20621749 | MS.gene79071:CDS | 40.0% | |
| CAATCACCAATACCCTTGTA+GGG | + | chr3.1:20622009-20622028 | None:intergenic | 40.0% | |
| CATACCCAATTGACACTGTT+AGG | - | chr3.1:20622773-20622792 | MS.gene79071:CDS | 40.0% | |
| CCAACAAATTCTCAGGAATG+AGG | - | chr3.1:20622855-20622874 | MS.gene79071:CDS | 40.0% | |
| CCTCATTCCTGAGAATTTGT+TGG | + | chr3.1:20622858-20622877 | None:intergenic | 40.0% | |
| CTTAGCTGCCTTAGAATCAT+TGG | + | chr3.1:20622371-20622390 | None:intergenic | 40.0% | |
| CTTCTCCTAACAGTGTCAAT+TGG | + | chr3.1:20622781-20622800 | None:intergenic | 40.0% | |
| CTTGTGTTCGGCAAGAAATA+CGG | - | chr3.1:20622970-20622989 | MS.gene79071:CDS | 40.0% | |
| GAAAACAACTAACCTGAGTG+GGG | + | chr3.1:20622107-20622126 | None:intergenic | 40.0% | |
| GGTCTTTCATCTGGATTTAG+GGG | - | chr3.1:20621679-20621698 | MS.gene79071:CDS | 40.0% | |
| GGTGCTAAGTCATTGTTCAA+GGG | - | chr3.1:20622877-20622896 | MS.gene79071:CDS | 40.0% | |
| GGTTAAGCAACCAACAATCA+TGG | - | chr3.1:20621624-20621643 | MS.gene79071:CDS | 40.0% | |
| GTAAACAAACAAGAGGGATG+AGG | + | chr3.1:20622320-20622339 | None:intergenic | 40.0% | |
| GTAGACAATGATTCCAACAC+AGG | + | chr3.1:20622491-20622510 | None:intergenic | 40.0% | |
| GTTCCCATAGGAGAATCTTT+GGG | + | chr3.1:20621737-20621756 | None:intergenic | 40.0% | |
| TAACCTGAGTGGGGAAATAA+CGG | + | chr3.1:20622098-20622117 | None:intergenic | 40.0% | |
| TCGTCTTGCCAATGATTCTA+AGG | - | chr3.1:20622360-20622379 | MS.gene79071:CDS | 40.0% | |
| TCTGGATTTAGGGGTTATGA+AGG | - | chr3.1:20621688-20621707 | MS.gene79071:CDS | 40.0% | |
| TCTTCTCACTGGAAAATTGC+AGG | - | chr3.1:20622552-20622571 | MS.gene79071:CDS | 40.0% | |
| TGTCCCAAAGATTCTCCTAT+GGG | - | chr3.1:20621731-20621750 | MS.gene79071:CDS | 40.0% | |
| TTGCTACTGATGGAATTGCT+GGG | - | chr3.1:20622443-20622462 | MS.gene79071:intron | 40.0% | |
| ! | CTGGTCTTTCATCTGGATTT+AGG | - | chr3.1:20621677-20621696 | MS.gene79071:CDS | 40.0% |
| ! | GAGGCTTTTCAACTTCAAGA+AGG | - | chr3.1:20622234-20622253 | MS.gene79071:CDS | 40.0% |
| ! | TGATCATCTCATCCTGGTTT+TGG | + | chr3.1:20621966-20621985 | None:intergenic | 40.0% |
| !! | ATAGGAGAATCTTTGGGACA+TGG | + | chr3.1:20621731-20621750 | None:intergenic | 40.0% |
| !! | GATTCTAAGGCAGCTAAGAA+AGG | - | chr3.1:20622373-20622392 | MS.gene79071:CDS | 40.0% |
| !! | GGGGAAATAACGGATAACAT+TGG | + | chr3.1:20622088-20622107 | None:intergenic | 40.0% |
| !! | GTTATTGACTTTCTCATGGG+TGG | - | chr3.1:20621880-20621899 | MS.gene79071:CDS | 40.0% |
| AACTTCAAGAAGGACAGGGA+TGG | - | chr3.1:20622244-20622263 | MS.gene79071:CDS | 45.0% | |
| AAGTCATTGTTCAAGGGAGC+TGG | - | chr3.1:20622883-20622902 | MS.gene79071:CDS | 45.0% | |
| ACAATCATGGAGAAGGTCAC+TGG | - | chr3.1:20621637-20621656 | MS.gene79071:CDS | 45.0% | |
| ACAATCCGAAGTACAGACCA+CGG | + | chr3.1:20622513-20622532 | None:intergenic | 45.0% | |
| ACAGGGATGGTTACTGGAAA+TGG | - | chr3.1:20622257-20622276 | MS.gene79071:CDS | 45.0% | |
| AGCGTTTGAGTAGTTCCCAT+AGG | + | chr3.1:20621749-20621768 | None:intergenic | 45.0% | |
| ATCATTGGCAAGACGAGTAC+GGG | + | chr3.1:20622356-20622375 | None:intergenic | 45.0% | |
| CACAGGAGATGTTGAAACCA+CGG | + | chr3.1:20622474-20622493 | None:intergenic | 45.0% | |
| CAGACTTGATCATCTCATCC+TGG | + | chr3.1:20621972-20621991 | None:intergenic | 45.0% | |
| CAGATGAAAGACCAGATCGA+CGG | + | chr3.1:20621672-20621691 | None:intergenic | 45.0% | |
| CAGCTAAGAAAGGTGGAGAA+AGG | - | chr3.1:20622383-20622402 | MS.gene79071:CDS | 45.0% | |
| CAGGATGAGATGATCAAGTC+TGG | - | chr3.1:20621970-20621989 | MS.gene79071:intron | 45.0% | |
| CAGTGAGAAGAACAGGTTTG+AGG | + | chr3.1:20622543-20622562 | None:intergenic | 45.0% | |
| CTCAAACCTGTTCTTCTCAC+TGG | - | chr3.1:20622541-20622560 | MS.gene79071:CDS | 45.0% | |
| CTTGCTACTGATGGAATTGC+TGG | - | chr3.1:20622442-20622461 | MS.gene79071:intron | 45.0% | |
| CTTGGATGGCTCATTACCAA+TGG | - | chr3.1:20622736-20622755 | MS.gene79071:CDS | 45.0% | |
| GCAACCAACAATCATGGAGA+AGG | - | chr3.1:20621630-20621649 | MS.gene79071:CDS | 45.0% | |
| GGGTGCTAAGTCATTGTTCA+AGG | - | chr3.1:20622876-20622895 | MS.gene79071:CDS | 45.0% | |
| GGTTTCAACATCTCCTGTGT+TGG | - | chr3.1:20622475-20622494 | MS.gene79071:intron | 45.0% | |
| GTGACCTTCTCCATGATTGT+TGG | + | chr3.1:20621637-20621656 | None:intergenic | 45.0% | |
| GTTGGAATCATTGTCTACCG+TGG | - | chr3.1:20622493-20622512 | MS.gene79071:intron | 45.0% | |
| TTCGGCAAGAAATACGGATC+TGG | - | chr3.1:20622976-20622995 | MS.gene79071:CDS | 45.0% | |
| ! | ACGAAATGGCTCTTTTCTGC+TGG | + | chr3.1:20621862-20621881 | None:intergenic | 45.0% |
| ! | GAAATGGTTTGCCGGTAACT+TGG | - | chr3.1:20622273-20622292 | MS.gene79071:CDS | 45.0% |
| ! | GGTTACTGGAAATGGTTTGC+CGG | - | chr3.1:20622265-20622284 | MS.gene79071:CDS | 45.0% |
| ! | TATCCGTTATTTCCCCACTC+AGG | - | chr3.1:20622092-20622111 | MS.gene79071:CDS | 45.0% |
| ! | TCTAAGGCAGCTAAGAAAGG+TGG | - | chr3.1:20622376-20622395 | MS.gene79071:CDS | 45.0% |
| ! | TTCTGGTTACGACAAGTTGC+AGG | - | chr3.1:20622945-20622964 | MS.gene79071:CDS | 45.0% |
| !!! | AGCAGCAGCAGTTTTGGAAA+CGG | + | chr3.1:20621917-20621936 | None:intergenic | 45.0% |
| ACCTCCAGATGCCAAGTTAC+CGG | + | chr3.1:20622287-20622306 | None:intergenic | 50.0% | |
| AGAAGGACAGGGATGGTTAC+TGG | - | chr3.1:20622251-20622270 | MS.gene79071:CDS | 50.0% | |
| ATCAACAGTTGCCCTGCAAG+TGG | + | chr3.1:20621794-20621813 | None:intergenic | 50.0% | |
| ATGAAAGACCAGATCGACGG+TGG | + | chr3.1:20621669-20621688 | None:intergenic | 50.0% | |
| CGCTGCATTGCAGAATCCAA+TGG | - | chr3.1:20621765-20621784 | MS.gene79071:CDS | 50.0% | |
| GGCAAGAAATACGGATCTGG+TGG | - | chr3.1:20622979-20622998 | MS.gene79071:CDS | 50.0% | |
| GGTGGAGAAAGGCAGTTCAA+TGG | - | chr3.1:20622394-20622413 | MS.gene79071:CDS | 50.0% | |
| GTCTACCGTGGTCTGTACTT+CGG | - | chr3.1:20622505-20622524 | MS.gene79071:intron | 50.0% | |
| TCAACAGTTGCCCTGCAAGT+GGG | + | chr3.1:20621793-20621812 | None:intergenic | 50.0% | |
| TGATGCTAGACCTGCACCAT+TGG | + | chr3.1:20622755-20622774 | None:intergenic | 50.0% | |
| TGGCTCATTACCAATGGTGC+AGG | - | chr3.1:20622742-20622761 | MS.gene79071:CDS | 50.0% | |
| TTTCGTTGCAAGCATGCCAC+TGG | - | chr3.1:20622628-20622647 | MS.gene79071:CDS | 50.0% | |
| TTTGCCGGTAACTTGGCATC+TGG | - | chr3.1:20622280-20622299 | MS.gene79071:CDS | 50.0% | |
| ! | AATGGGAGCAGCAGCAGTTT+TGG | + | chr3.1:20621923-20621942 | None:intergenic | 50.0% |
| ! | CGTCGATCTGGTCTTTCATC+TGG | - | chr3.1:20621670-20621689 | MS.gene79071:CDS | 50.0% |
| ! | TCTGAGCCCTACAAGGGTAT+TGG | - | chr3.1:20622000-20622019 | MS.gene79071:intron | 50.0% |
| ! | TTTTTCGCCAGCTTTGCGCT+TGG | - | chr3.1:20622718-20622737 | MS.gene79071:CDS | 50.0% |
| !! | ATCTTTGGGACATGGCAGGA+TGG | + | chr3.1:20621723-20621742 | None:intergenic | 50.0% |
| !! | ATGAGGGTGTTGTTGCTCTC+TGG | - | chr3.1:20622049-20622068 | MS.gene79071:CDS | 50.0% |
| !! | GAGAATCTTTGGGACATGGC+AGG | + | chr3.1:20621727-20621746 | None:intergenic | 50.0% |
| !!! | AGCAGCAGTTTTGGAAACGG+CGG | + | chr3.1:20621914-20621933 | None:intergenic | 50.0% |
| AACAGTTGCCCTGCAAGTGG+GGG | + | chr3.1:20621791-20621810 | None:intergenic | 55.0% | |
| AAGCACACCAGCACCAGCAA+CGG | + | chr3.1:20622926-20622945 | None:intergenic | 55.0% | |
| AGGCTCTCTGAGCCCTACAA+GGG | - | chr3.1:20621994-20622013 | MS.gene79071:intron | 55.0% | |
| CAACAGTTGCCCTGCAAGTG+GGG | + | chr3.1:20621792-20621811 | None:intergenic | 55.0% | |
| GGAATTGCTGGGCTTTACCG+TGG | - | chr3.1:20622454-20622473 | MS.gene79071:intron | 55.0% | |
| TAGGCTCTCTGAGCCCTACA+AGG | - | chr3.1:20621993-20622012 | MS.gene79071:intron | 55.0% | |
| ! | TTTGGGACATGGCAGGATGG+CGG | + | chr3.1:20621720-20621739 | None:intergenic | 55.0% |
| !! | GGTGTTGTTGCTCTCTGGAG+AGG | - | chr3.1:20622054-20622073 | MS.gene79071:CDS | 55.0% |
| ATCCAATGGCCCCCACTTGC+AGG | - | chr3.1:20621779-20621798 | MS.gene79071:CDS | 60.0% | |
| GAGCCATCCAAGCGCAAAGC+TGG | + | chr3.1:20622728-20622747 | None:intergenic | 60.0% | |
| GCCGGTAACTTGGCATCTGG+AGG | - | chr3.1:20622283-20622302 | MS.gene79071:CDS | 60.0% | |
| TCCAATGGCCCCCACTTGCA+GGG | - | chr3.1:20621780-20621799 | MS.gene79071:CDS | 60.0% | |
| TCGCCAGCTTTGCGCTTGGA+TGG | - | chr3.1:20622722-20622741 | MS.gene79071:CDS | 60.0% | |
| TGCTGGAGCAGCGACGAAGA+CGG | + | chr3.1:20621845-20621864 | None:intergenic | 60.0% | |
| ! | AACATCCTCCGTGCCGTTGC+TGG | - | chr3.1:20622910-20622929 | MS.gene79071:CDS | 60.0% |
| !! | GCTGGTGCTGGTGTGCTTTC+TGG | - | chr3.1:20622928-20622947 | MS.gene79071:CDS | 60.0% |
| !! | TTGGCATCTGGAGGTGCTGC+TGG | - | chr3.1:20622292-20622311 | MS.gene79071:CDS | 60.0% |
| CACCAGCACCAGCAACGGCA+CGG | + | chr3.1:20622921-20622940 | None:intergenic | 65.0% | |
| GACCAGATCGACGGTGGAGC+TGG | + | chr3.1:20621663-20621682 | None:intergenic | 65.0% | |
| GCTGGAGCAGCGACGAAGAC+GGG | + | chr3.1:20621844-20621863 | None:intergenic | 65.0% | |
| ! | GGACATGGCAGGATGGCGGT+AGG | + | chr3.1:20621716-20621735 | None:intergenic | 65.0% |
| CAGCACCAGCAACGGCACGG+AGG | + | chr3.1:20622918-20622937 | None:intergenic | 70.0% | |
| GCCCTGCAAGTGGGGGCCAT+TGG | + | chr3.1:20621784-20621803 | None:intergenic | 70.0% | |
| GGCCAGCTCCACCGTCGATC+TGG | - | chr3.1:20621658-20621677 | MS.gene79071:CDS | 70.0% | |
| ! | CTCCGTGCCGTTGCTGGTGC+TGG | - | chr3.1:20622916-20622935 | MS.gene79071:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 20621613 | 20623008 | 20621613 | ID=MS.gene79071 |
| chr3.1 | mRNA | 20621613 | 20623008 | 20621613 | ID=MS.gene79071.t1;Parent=MS.gene79071 |
| chr3.1 | exon | 20622508 | 20623008 | 20622508 | ID=MS.gene79071.t1.exon1;Parent=MS.gene79071.t1 |
| chr3.1 | CDS | 20622508 | 20623008 | 20622508 | ID=cds.MS.gene79071.t1;Parent=MS.gene79071.t1 |
| chr3.1 | exon | 20622048 | 20622419 | 20622048 | ID=MS.gene79071.t1.exon2;Parent=MS.gene79071.t1 |
| chr3.1 | CDS | 20622048 | 20622419 | 20622048 | ID=cds.MS.gene79071.t1;Parent=MS.gene79071.t1 |
| chr3.1 | exon | 20621613 | 20621909 | 20621613 | ID=MS.gene79071.t1.exon3;Parent=MS.gene79071.t1 |
| chr3.1 | CDS | 20621613 | 20621909 | 20621613 | ID=cds.MS.gene79071.t1;Parent=MS.gene79071.t1 |
| Gene Sequence |
| Protein sequence |