Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045584.t1 | XP_013456669.1 | 97.8 | 371 | 7 | 1 | 1 | 370 | 1 | 371 | 2.90E-203 | 717.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045584.t1 | O49447 | 80.4 | 378 | 64 | 2 | 3 | 370 | 2 | 379 | 3.4e-168 | 592.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045584.t1 | A0A072UXU6 | 97.8 | 371 | 7 | 1 | 1 | 370 | 1 | 371 | 2.1e-203 | 717.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene93756 | MS.gene045584 | PPI |
MS.gene82276 | MS.gene045584 | PPI |
MS.gene90510 | MS.gene045584 | PPI |
MS.gene79071 | MS.gene045584 | PPI |
MS.gene064041 | MS.gene045584 | PPI |
MS.gene040118 | MS.gene045584 | PPI |
MS.gene46786 | MS.gene045584 | PPI |
MS.gene94558 | MS.gene045584 | PPI |
MS.gene047628 | MS.gene045584 | PPI |
MS.gene015010 | MS.gene045584 | PPI |
MS.gene99200 | MS.gene045584 | PPI |
MS.gene030289 | MS.gene045584 | PPI |
MS.gene045584 | MS.gene074632 | PPI |
MS.gene37419 | MS.gene045584 | PPI |
MS.gene56778 | MS.gene045584 | PPI |
MS.gene064047 | MS.gene045584 | PPI |
MS.gene041083 | MS.gene045584 | PPI |
MS.gene064043 | MS.gene045584 | PPI |
MS.gene015154 | MS.gene045584 | PPI |
MS.gene074631 | MS.gene045584 | PPI |
MS.gene046998 | MS.gene045584 | PPI |
MS.gene23588 | MS.gene045584 | PPI |
MS.gene75068 | MS.gene045584 | PPI |
MS.gene045584 | MS.gene46786 | PPI |
MS.gene016690 | MS.gene045584 | PPI |
MS.gene011817 | MS.gene045584 | PPI |
MS.gene012807 | MS.gene045584 | PPI |
MS.gene66338 | MS.gene045584 | PPI |
MS.gene60471 | MS.gene045584 | PPI |
MS.gene32809 | MS.gene045584 | PPI |
MS.gene010354 | MS.gene045584 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045584.t1 | MTR_4g078545 | 97.844 | 371 | 7 | 1 | 1 | 370 | 1 | 371 | 0.0 | 736 |
MS.gene045584.t1 | MTR_3g028590 | 74.680 | 391 | 74 | 4 | 1 | 369 | 5 | 392 | 0.0 | 546 |
MS.gene045584.t1 | MTR_3g028590 | 74.680 | 391 | 74 | 4 | 1 | 369 | 1 | 388 | 0.0 | 545 |
MS.gene045584.t1 | MTR_8g036880 | 74.599 | 374 | 80 | 5 | 1 | 369 | 35 | 398 | 0.0 | 519 |
MS.gene045584.t1 | MTR_2g098070 | 73.243 | 370 | 88 | 4 | 1 | 369 | 2 | 361 | 3.59e-180 | 504 |
MS.gene045584.t1 | MTR_8g107270 | 58.537 | 287 | 119 | 0 | 73 | 359 | 17 | 303 | 1.29e-128 | 372 |
MS.gene045584.t1 | MTR_3g104500 | 39.796 | 294 | 166 | 6 | 70 | 357 | 30 | 318 | 3.31e-68 | 218 |
MS.gene045584.t1 | MTR_6g091800 | 29.431 | 299 | 190 | 6 | 70 | 357 | 15 | 303 | 4.36e-34 | 128 |
MS.gene045584.t1 | MTR_3g104600 | 30.990 | 313 | 174 | 10 | 70 | 357 | 31 | 326 | 1.26e-30 | 119 |
MS.gene045584.t1 | MTR_6g091800 | 27.554 | 323 | 189 | 7 | 70 | 357 | 15 | 327 | 5.63e-30 | 118 |
MS.gene045584.t1 | MTR_1g012030 | 29.236 | 301 | 186 | 10 | 65 | 360 | 132 | 410 | 1.79e-29 | 118 |
MS.gene045584.t1 | MTR_1g012030 | 27.273 | 209 | 131 | 6 | 62 | 267 | 221 | 411 | 2.59e-14 | 74.3 |
MS.gene045584.t1 | MTR_6g091800 | 30.159 | 252 | 159 | 4 | 70 | 314 | 15 | 256 | 5.33e-29 | 114 |
MS.gene045584.t1 | MTR_6g091800 | 31.020 | 245 | 152 | 4 | 70 | 307 | 15 | 249 | 9.90e-29 | 112 |
MS.gene045584.t1 | MTR_6g091800 | 27.597 | 308 | 179 | 6 | 70 | 343 | 15 | 312 | 9.97e-29 | 114 |
MS.gene045584.t1 | MTR_3g107510 | 28.881 | 277 | 173 | 8 | 77 | 349 | 125 | 381 | 6.01e-28 | 113 |
MS.gene045584.t1 | MTR_3g107510 | 28.571 | 196 | 120 | 5 | 75 | 267 | 216 | 394 | 1.90e-15 | 77.4 |
MS.gene045584.t1 | MTR_7g068340 | 31.095 | 283 | 164 | 8 | 85 | 360 | 98 | 356 | 7.99e-27 | 110 |
MS.gene045584.t1 | MTR_5g009500 | 28.660 | 321 | 175 | 12 | 74 | 360 | 38 | 338 | 9.41e-27 | 109 |
MS.gene045584.t1 | MTR_5g009500 | 24.107 | 224 | 153 | 4 | 54 | 266 | 121 | 338 | 2.76e-11 | 64.7 |
MS.gene045584.t1 | MTR_8g027975 | 29.630 | 297 | 172 | 10 | 74 | 344 | 51 | 336 | 6.88e-26 | 107 |
MS.gene045584.t1 | MTR_8g027975 | 26.601 | 203 | 130 | 5 | 77 | 266 | 157 | 353 | 2.72e-12 | 67.8 |
MS.gene045584.t1 | MTR_6g091800 | 27.899 | 276 | 158 | 5 | 70 | 314 | 15 | 280 | 5.12e-25 | 103 |
MS.gene045584.t1 | MTR_4g114320 | 28.058 | 278 | 180 | 6 | 74 | 349 | 123 | 382 | 5.83e-25 | 105 |
MS.gene045584.t1 | MTR_4g114320 | 28.019 | 207 | 127 | 5 | 60 | 263 | 204 | 391 | 1.71e-16 | 80.5 |
MS.gene045584.t1 | MTR_6g091800 | 28.625 | 269 | 151 | 5 | 70 | 307 | 15 | 273 | 9.22e-25 | 102 |
MS.gene045584.t1 | MTR_7g064980 | 28.247 | 308 | 202 | 8 | 64 | 360 | 15 | 314 | 1.73e-24 | 102 |
MS.gene045584.t1 | MTR_6g034145 | 29.268 | 246 | 160 | 5 | 123 | 357 | 7 | 249 | 3.04e-24 | 100 |
MS.gene045584.t1 | MTR_6g034145 | 26.341 | 205 | 135 | 6 | 65 | 263 | 55 | 249 | 1.77e-12 | 67.4 |
MS.gene045584.t1 | MTR_6g092210 | 29.167 | 240 | 162 | 5 | 123 | 357 | 7 | 243 | 1.37e-23 | 98.6 |
MS.gene045584.t1 | MTR_6g092210 | 25.628 | 199 | 138 | 4 | 65 | 263 | 55 | 243 | 2.28e-12 | 67.0 |
MS.gene045584.t1 | MTR_6g091800 | 31.694 | 183 | 109 | 3 | 70 | 245 | 15 | 188 | 1.93e-23 | 96.7 |
MS.gene045584.t1 | MTR_5g081150 | 27.097 | 310 | 206 | 8 | 60 | 360 | 23 | 321 | 8.88e-23 | 97.8 |
MS.gene045584.t1 | MTR_2g436930 | 27.358 | 318 | 186 | 8 | 71 | 354 | 12 | 318 | 1.63e-22 | 97.1 |
MS.gene045584.t1 | MTR_8g096050 | 28.723 | 282 | 177 | 9 | 74 | 349 | 227 | 490 | 3.24e-22 | 98.2 |
MS.gene045584.t1 | MTR_4g016730 | 31.944 | 288 | 162 | 11 | 74 | 354 | 89 | 349 | 3.96e-22 | 96.7 |
MS.gene045584.t1 | MTR_7g084400 | 28.772 | 285 | 170 | 8 | 74 | 349 | 213 | 473 | 1.28e-21 | 96.3 |
MS.gene045584.t1 | MTR_4g119770 | 26.087 | 322 | 191 | 8 | 71 | 356 | 11 | 321 | 2.04e-21 | 94.0 |
MS.gene045584.t1 | MTR_3g098460 | 28.622 | 283 | 176 | 10 | 74 | 349 | 205 | 468 | 5.12e-20 | 91.7 |
MS.gene045584.t1 | MTR_6g091800 | 28.986 | 207 | 107 | 4 | 70 | 245 | 15 | 212 | 1.90e-19 | 86.3 |
MS.gene045584.t1 | MTR_4g119770 | 26.538 | 260 | 155 | 6 | 71 | 305 | 11 | 259 | 8.15e-19 | 85.5 |
MS.gene045584.t1 | MTR_3g074490 | 27.508 | 309 | 175 | 12 | 77 | 360 | 119 | 403 | 3.92e-18 | 85.5 |
MS.gene045584.t1 | MTR_4g005330 | 24.161 | 298 | 184 | 7 | 73 | 349 | 65 | 341 | 2.55e-17 | 82.8 |
MS.gene045584.t1 | MTR_6g091910 | 28.283 | 198 | 131 | 5 | 70 | 263 | 15 | 205 | 9.26e-17 | 79.0 |
MS.gene045584.t1 | MTR_6g091910 | 27.083 | 192 | 130 | 5 | 175 | 357 | 15 | 205 | 6.29e-11 | 62.0 |
MS.gene045584.t1 | MTR_4g005330 | 24.150 | 294 | 181 | 7 | 77 | 349 | 3 | 275 | 2.78e-16 | 79.0 |
MS.gene045584.t1 | MTR_1g090330 | 22.932 | 266 | 193 | 5 | 74 | 335 | 14 | 271 | 3.04e-15 | 75.9 |
MS.gene045584.t1 | MTR_1g090330 | 29.167 | 168 | 111 | 4 | 75 | 241 | 112 | 272 | 7.16e-14 | 72.0 |
MS.gene045584.t1 | MTR_5g030530 | 26.621 | 293 | 195 | 10 | 73 | 354 | 7 | 290 | 5.81e-15 | 75.1 |
MS.gene045584.t1 | MTR_7g066690 | 24.254 | 268 | 194 | 6 | 70 | 335 | 13 | 273 | 8.46e-15 | 74.7 |
MS.gene045584.t1 | MTR_7g084400 | 30.102 | 196 | 111 | 5 | 74 | 263 | 207 | 382 | 1.20e-14 | 75.1 |
MS.gene045584.t1 | MTR_3g100570 | 24.830 | 294 | 188 | 8 | 74 | 342 | 6 | 291 | 3.10e-14 | 73.2 |
MS.gene045584.t1 | MTR_5g081150 | 29.530 | 149 | 96 | 3 | 60 | 204 | 23 | 166 | 4.76e-14 | 71.6 |
MS.gene045584.t1 | MTR_5g081150 | 29.530 | 149 | 96 | 3 | 60 | 204 | 23 | 166 | 5.62e-14 | 71.6 |
MS.gene045584.t1 | MTR_2g102010 | 24.476 | 286 | 199 | 6 | 73 | 354 | 16 | 288 | 1.23e-13 | 71.2 |
MS.gene045584.t1 | MTR_4g018750 | 24.060 | 266 | 189 | 8 | 74 | 335 | 15 | 271 | 2.89e-13 | 70.1 |
MS.gene045584.t1 | MTR_8g066975 | 24.232 | 293 | 181 | 8 | 73 | 344 | 7 | 279 | 4.49e-13 | 69.3 |
MS.gene045584.t1 | MTR_4g012850 | 25.692 | 253 | 174 | 5 | 119 | 364 | 51 | 296 | 5.35e-13 | 69.3 |
MS.gene045584.t1 | MTR_8g090210 | 25.000 | 308 | 184 | 12 | 77 | 360 | 113 | 397 | 1.02e-12 | 69.3 |
MS.gene045584.t1 | MTR_2g436930 | 28.718 | 195 | 112 | 4 | 181 | 354 | 40 | 228 | 1.09e-12 | 67.4 |
MS.gene045584.t1 | MTR_4g057850 | 25.000 | 304 | 191 | 10 | 76 | 365 | 27 | 307 | 2.21e-12 | 67.8 |
MS.gene045584.t1 | MTR_7g109135 | 22.074 | 299 | 210 | 8 | 61 | 349 | 9 | 294 | 3.38e-12 | 67.0 |
MS.gene045584.t1 | MTR_4g018750 | 24.303 | 251 | 177 | 8 | 74 | 320 | 15 | 256 | 2.00e-11 | 64.3 |
MS.gene045584.t1 | MTR_5g032420 | 22.074 | 299 | 199 | 7 | 74 | 342 | 6 | 300 | 9.88e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045584.t1 | AT4G28390 | 80.423 | 378 | 64 | 2 | 3 | 370 | 2 | 379 | 0.0 | 583 |
MS.gene045584.t1 | AT4G28390 | 80.423 | 378 | 64 | 2 | 3 | 370 | 2 | 379 | 0.0 | 583 |
MS.gene045584.t1 | AT5G13490 | 74.545 | 385 | 81 | 4 | 1 | 369 | 1 | 384 | 0.0 | 544 |
MS.gene045584.t1 | AT5G13490 | 74.545 | 385 | 81 | 4 | 1 | 369 | 1 | 384 | 0.0 | 544 |
MS.gene045584.t1 | AT3G08580 | 74.541 | 381 | 84 | 4 | 1 | 369 | 1 | 380 | 0.0 | 527 |
MS.gene045584.t1 | AT3G08580 | 74.541 | 381 | 84 | 4 | 1 | 369 | 1 | 380 | 0.0 | 527 |
MS.gene045584.t1 | AT5G17400 | 61.986 | 292 | 111 | 0 | 70 | 361 | 10 | 301 | 7.62e-133 | 382 |
MS.gene045584.t1 | AT5G56450 | 38.614 | 303 | 167 | 7 | 70 | 360 | 30 | 325 | 5.13e-62 | 202 |
MS.gene045584.t1 | AT4G26180 | 32.899 | 307 | 176 | 9 | 70 | 360 | 17 | 309 | 4.97e-33 | 126 |
MS.gene045584.t1 | AT4G26180 | 33.218 | 289 | 164 | 8 | 70 | 343 | 17 | 291 | 1.04e-31 | 121 |
MS.gene045584.t1 | AT2G37890 | 29.341 | 334 | 217 | 8 | 37 | 360 | 8 | 332 | 1.34e-31 | 122 |
MS.gene045584.t1 | AT3G55640 | 28.475 | 295 | 194 | 7 | 73 | 358 | 37 | 323 | 6.70e-30 | 117 |
MS.gene045584.t1 | AT3G55640 | 28.475 | 295 | 194 | 7 | 73 | 358 | 37 | 323 | 6.70e-30 | 117 |
MS.gene045584.t1 | AT1G14560 | 29.537 | 281 | 172 | 6 | 85 | 349 | 38 | 308 | 1.73e-29 | 116 |
MS.gene045584.t1 | AT3G51870 | 33.333 | 282 | 159 | 10 | 85 | 360 | 102 | 360 | 4.39e-29 | 116 |
MS.gene045584.t1 | AT1G14560 | 29.818 | 275 | 167 | 6 | 85 | 343 | 38 | 302 | 8.61e-29 | 114 |
MS.gene045584.t1 | AT5G01500 | 33.212 | 274 | 158 | 11 | 85 | 354 | 130 | 382 | 1.16e-27 | 113 |
MS.gene045584.t1 | AT3G53940 | 29.545 | 308 | 196 | 9 | 64 | 360 | 63 | 360 | 1.67e-27 | 111 |
MS.gene045584.t1 | AT4G32400 | 30.605 | 281 | 169 | 9 | 74 | 349 | 114 | 373 | 2.44e-27 | 111 |
MS.gene045584.t1 | AT4G01100 | 27.812 | 320 | 175 | 11 | 77 | 360 | 45 | 344 | 3.47e-25 | 105 |
MS.gene045584.t1 | AT4G01100 | 28.000 | 325 | 182 | 11 | 77 | 360 | 45 | 358 | 1.26e-23 | 100 |
MS.gene045584.t1 | AT5G51050 | 29.643 | 280 | 174 | 7 | 74 | 349 | 223 | 483 | 1.39e-23 | 102 |
MS.gene045584.t1 | AT4G01100 | 27.070 | 314 | 173 | 11 | 83 | 360 | 1 | 294 | 3.68e-23 | 98.6 |
MS.gene045584.t1 | AT4G01100 | 25.854 | 205 | 129 | 6 | 77 | 266 | 98 | 294 | 5.48e-12 | 66.2 |
MS.gene045584.t1 | AT5G61810 | 27.857 | 280 | 174 | 7 | 74 | 349 | 65 | 320 | 3.52e-22 | 96.3 |
MS.gene045584.t1 | AT5G48970 | 27.358 | 318 | 189 | 8 | 71 | 354 | 19 | 328 | 8.29e-22 | 95.5 |
MS.gene045584.t1 | AT3G21390 | 26.582 | 316 | 193 | 8 | 71 | 354 | 16 | 324 | 1.21e-21 | 94.7 |
MS.gene045584.t1 | AT3G20240 | 24.746 | 295 | 186 | 6 | 73 | 349 | 51 | 327 | 1.75e-21 | 94.7 |
MS.gene045584.t1 | AT3G21390 | 26.582 | 316 | 193 | 8 | 71 | 354 | 38 | 346 | 2.63e-21 | 94.4 |
MS.gene045584.t1 | AT5G61810 | 27.857 | 280 | 174 | 7 | 74 | 349 | 208 | 463 | 3.96e-21 | 95.1 |
MS.gene045584.t1 | AT3G55640 | 28.205 | 195 | 128 | 3 | 73 | 263 | 37 | 223 | 4.36e-21 | 91.7 |
MS.gene045584.t1 | AT3G55640 | 28.205 | 195 | 128 | 3 | 73 | 263 | 37 | 223 | 4.36e-21 | 91.7 |
MS.gene045584.t1 | AT5G07320 | 26.296 | 270 | 173 | 7 | 83 | 349 | 218 | 464 | 3.24e-19 | 89.4 |
MS.gene045584.t1 | AT1G14560 | 30.851 | 188 | 113 | 4 | 178 | 349 | 24 | 210 | 5.01e-19 | 85.5 |
MS.gene045584.t1 | AT3G53940 | 29.167 | 216 | 139 | 4 | 64 | 274 | 63 | 269 | 5.14e-19 | 86.7 |
MS.gene045584.t1 | AT5G48970 | 26.562 | 256 | 153 | 6 | 126 | 354 | 10 | 257 | 9.47e-16 | 77.0 |
MS.gene045584.t1 | AT5G64970 | 27.797 | 295 | 169 | 11 | 77 | 349 | 138 | 410 | 2.31e-15 | 77.4 |
MS.gene045584.t1 | AT5G64970 | 27.119 | 295 | 171 | 11 | 77 | 349 | 14 | 286 | 9.47e-15 | 74.7 |
MS.gene045584.t1 | AT3G54110 | 23.485 | 264 | 193 | 7 | 74 | 335 | 15 | 271 | 1.22e-14 | 74.3 |
MS.gene045584.t1 | AT1G14140 | 24.820 | 278 | 192 | 7 | 64 | 335 | 8 | 274 | 1.48e-14 | 73.9 |
MS.gene045584.t1 | AT5G64970 | 28.028 | 289 | 164 | 11 | 77 | 343 | 138 | 404 | 1.68e-14 | 74.7 |
MS.gene045584.t1 | AT5G58970 | 24.460 | 278 | 195 | 6 | 70 | 342 | 12 | 279 | 2.82e-14 | 73.2 |
MS.gene045584.t1 | AT1G78180 | 26.948 | 308 | 178 | 12 | 77 | 360 | 131 | 415 | 7.54e-13 | 69.7 |
MS.gene045584.t1 | AT5G66380 | 27.805 | 205 | 124 | 6 | 172 | 364 | 5 | 197 | 2.03e-12 | 67.8 |
MS.gene045584.t1 | AT4G27940 | 25.000 | 272 | 169 | 12 | 114 | 360 | 146 | 407 | 6.35e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCCTATTTGTCTATTCTT+TGG | 0.187425 | 4.1:+27340084 | MS.gene045584:CDS |
GATAGGTGGACATTCTTATT+TGG | 0.215860 | 4.1:+27339068 | MS.gene045584:CDS |
TGAGCATTTCATCCTGGTTT+TGG | 0.229183 | 4.1:-27339323 | None:intergenic |
GACATTCTTATTTGGTTTCC+AGG | 0.255723 | 4.1:+27339076 | MS.gene045584:CDS |
GTCTTGTTTGGAAAGAAATA+TGG | 0.260053 | 4.1:+27341069 | MS.gene045584:CDS |
GGTGGTGAGAGGCAGTTTAA+TGG | 0.306537 | 4.1:+27340154 | MS.gene045584:CDS |
GCAGGTGCTGGTGTGCTTGC+TGG | 0.309350 | 4.1:+27341027 | MS.gene045584:CDS |
TATCACAATTGGTGCTGGTT+TGG | 0.315135 | 4.1:+27340846 | MS.gene045584:CDS |
AATCCAAAGAATAGACAAAT+AGG | 0.321819 | 4.1:-27340087 | None:intergenic |
CAGTCACCAATTCCCTTATA+TGG | 0.327603 | 4.1:-27339366 | None:intergenic |
TGCTAGTTTCCTGTTGGGAT+GGG | 0.328388 | 4.1:+27340822 | MS.gene045584:CDS |
AATTATACCCTCATCCTTCA+TGG | 0.333517 | 4.1:-27339400 | None:intergenic |
TTAGCATCTGGTGGAGCTGC+TGG | 0.340273 | 4.1:+27340052 | MS.gene045584:CDS |
AACATATTGCGTGCTGTTGC+AGG | 0.340667 | 4.1:+27341009 | MS.gene045584:CDS |
TTCTTTGCTAGTTTCCTGTT+GGG | 0.343196 | 4.1:+27340817 | MS.gene045584:CDS |
CCTATCTTCTGAGCAATTGA+TGG | 0.352718 | 4.1:-27339051 | None:intergenic |
AGAAGAATGATGATGACTTC+TGG | 0.353166 | 4.1:+27340895 | MS.gene045584:CDS |
AAGCTGCAGCTGGTCTTGTT+TGG | 0.353609 | 4.1:+27341057 | MS.gene045584:CDS |
TTACAGTCTGATGGCATTGC+TGG | 0.359420 | 4.1:+27340202 | MS.gene045584:CDS |
AGCAATTTAATTCGTTCAAT+AGG | 0.374655 | 4.1:-27339297 | None:intergenic |
GGCTACTGGAAGTGGTTTGC+TGG | 0.374984 | 4.1:+27340025 | MS.gene045584:CDS |
TTTGGAAAGAAATATGGTTC+TGG | 0.380189 | 4.1:+27341075 | MS.gene045584:CDS |
CTTTGCGTCATTTGCCAAAC+GGG | 0.396020 | 4.1:-27340119 | None:intergenic |
ACTAATGGAGTGCAGACTTC+TGG | 0.400993 | 4.1:+27339147 | MS.gene045584:CDS |
TTGCTAGTTTCCTGTTGGGA+TGG | 0.404433 | 4.1:+27340821 | MS.gene045584:CDS |
AGATGTTGAATCCACGATAA+AGG | 0.405874 | 4.1:-27340225 | None:intergenic |
CCATCAATTGCTCAGAAGAT+AGG | 0.406150 | 4.1:+27339051 | MS.gene045584:CDS |
GGATTATGCCCGTACCCGTT+TGG | 0.408041 | 4.1:+27340105 | MS.gene045584:CDS |
CTGAAACCAGTTGTCTTGGT+TGG | 0.408866 | 4.1:+27340301 | MS.gene045584:CDS |
TCTGAGCCATATAAGGGAAT+TGG | 0.421286 | 4.1:+27339360 | MS.gene045584:CDS |
TCTTCTACGCACAGTGTCAA+TGG | 0.421926 | 4.1:-27340878 | None:intergenic |
GTTAGAGTTGGCGCTAAGCC+TGG | 0.422723 | 4.1:-27339094 | None:intergenic |
CAGGTTATCTGAGCCATATA+AGG | 0.423186 | 4.1:+27339353 | MS.gene045584:CDS |
TAGCATCTGGTGGAGCTGCT+GGG | 0.424080 | 4.1:+27340053 | MS.gene045584:CDS |
GTGTATCGTGGTCTTTACTT+TGG | 0.436559 | 4.1:+27340265 | MS.gene045584:CDS |
TGGGGTATCACAATTGGTGC+TGG | 0.437821 | 4.1:+27340841 | MS.gene045584:CDS |
CCAAACCATCGTTGCAAAAG+AGG | 0.440517 | 4.1:+27340954 | MS.gene045584:CDS |
TGGAGTGCAGACTTCTGGTT+TGG | 0.442748 | 4.1:+27339152 | MS.gene045584:CDS |
TGACGCAAAGGCTGCAAAGA+AGG | 0.445560 | 4.1:+27340132 | MS.gene045584:CDS |
TTGGGATGGGGTATCACAAT+TGG | 0.445710 | 4.1:+27340835 | MS.gene045584:CDS |
TTTCTTTGCTAGTTTCCTGT+TGG | 0.448910 | 4.1:+27340816 | MS.gene045584:CDS |
CGTCATTTGCCAAACGGGTA+CGG | 0.451569 | 4.1:-27340114 | None:intergenic |
TTCTCTGAAACCAGTTGTCT+TGG | 0.454364 | 4.1:+27340297 | MS.gene045584:CDS |
ACGTCCGGTACTTTCACTAA+TGG | 0.459227 | 4.1:+27339132 | MS.gene045584:CDS |
CCAGCGGGTCCTTTCTCTGC+TGG | 0.461085 | 4.1:-27339213 | None:intergenic |
TTGCGTGCTGTTGCAGGTGC+TGG | 0.462273 | 4.1:+27341015 | MS.gene045584:CDS |
AAGAAATATGGTTCTGGCGG+CGG | 0.463431 | 4.1:+27341081 | MS.gene045584:CDS |
GGTCCTTTCTCTGCTGGAGA+AGG | 0.466249 | 4.1:-27339207 | None:intergenic |
AAACCAGTTGTCTTGGTTGG+TGG | 0.469067 | 4.1:+27340304 | MS.gene045584:CDS |
TTGTGATACCCCATCCCAAC+AGG | 0.471309 | 4.1:-27340831 | None:intergenic |
CACAGTGTCAATGGGATAAG+AGG | 0.473276 | 4.1:-27340869 | None:intergenic |
ATTCAGATTATCACCTGAGT+AGG | 0.479406 | 4.1:-27339465 | None:intergenic |
GCTAGTTTCCTGTTGGGATG+GGG | 0.479609 | 4.1:+27340823 | MS.gene045584:CDS |
TGTCTTGGTTGGTGGGATGC+AGG | 0.479765 | 4.1:+27340312 | MS.gene045584:CDS |
ATCCCACCAACCAAGACAAC+TGG | 0.485200 | 4.1:-27340307 | None:intergenic |
AGGTTATCTGAGCCATATAA+GGG | 0.488890 | 4.1:+27339354 | MS.gene045584:CDS |
CCTTTGCGTCATTTGCCAAA+CGG | 0.490345 | 4.1:-27340120 | None:intergenic |
GTCATTTGCCAAACGGGTAC+GGG | 0.492794 | 4.1:-27340113 | None:intergenic |
ACAGAGATGGCTACTGGAAG+TGG | 0.495428 | 4.1:+27340017 | MS.gene045584:CDS |
GCTGGGAATTTAGCATCTGG+TGG | 0.501424 | 4.1:+27340043 | MS.gene045584:CDS |
AGCAATGCCATCAGACTGTA+AGG | 0.504971 | 4.1:-27340200 | None:intergenic |
TACAGGAATTACTCTACGTC+CGG | 0.508953 | 4.1:+27339117 | MS.gene045584:CDS |
GTCCCTTCTCCAGCAGAGAA+AGG | 0.510593 | 4.1:+27339204 | MS.gene045584:CDS |
CTTCTACGCACAGTGTCAAT+GGG | 0.512712 | 4.1:-27340877 | None:intergenic |
TTTGCTGGGAATTTAGCATC+TGG | 0.520737 | 4.1:+27340040 | MS.gene045584:CDS |
GTAATTCCTGTAGTTAGAGT+TGG | 0.521037 | 4.1:-27339106 | None:intergenic |
AACCAGTTGTCTTGGTTGGT+GGG | 0.523148 | 4.1:+27340305 | MS.gene045584:CDS |
TGCTCGAACCATGAAGGATG+AGG | 0.524575 | 4.1:+27339392 | MS.gene045584:CDS |
TGGTTATGACAAGCTGCAGC+TGG | 0.524956 | 4.1:+27341047 | MS.gene045584:CDS |
AGCATCTGGTGGAGCTGCTG+GGG | 0.525003 | 4.1:+27340054 | MS.gene045584:CDS |
GGCATTGCTGGCCTTTATCG+TGG | 0.542365 | 4.1:+27340214 | MS.gene045584:CDS |
GTCCTTTCTCTGCTGGAGAA+GGG | 0.549707 | 4.1:-27339206 | None:intergenic |
GCTACTGGAAGTGGTTTGCT+GGG | 0.556481 | 4.1:+27340026 | MS.gene045584:CDS |
GGATTCAACATCTCGTGTGT+TGG | 0.556905 | 4.1:+27340235 | MS.gene045584:CDS |
ATGAAATGCTCAAAAGTGGC+AGG | 0.556927 | 4.1:+27339334 | MS.gene045584:CDS |
TTAGCGCCAACTCTAACTAC+AGG | 0.570302 | 4.1:+27339100 | MS.gene045584:CDS |
TTCAGATTATCACCTGAGTA+GGG | 0.571644 | 4.1:-27339464 | None:intergenic |
GACGCAAAGGCTGCAAAGAA+GGG | 0.572621 | 4.1:+27340133 | MS.gene045584:CDS |
CCAGCAGAGAAAGGACCCGC+TGG | 0.578869 | 4.1:+27339213 | MS.gene045584:CDS |
TGAGAGGCAGTTTAATGGAA+TGG | 0.581022 | 4.1:+27340159 | MS.gene045584:CDS |
CAAACCATCGTTGCAAAAGA+GGG | 0.586013 | 4.1:+27340955 | MS.gene045584:CDS |
CAGGATGAAATGCTCAAAAG+TGG | 0.586952 | 4.1:+27339330 | MS.gene045584:CDS |
AAGAAAACCTTACAGTCTGA+TGG | 0.592392 | 4.1:+27340193 | MS.gene045584:CDS |
TAGGCTGCAATCATGGCCGA+TGG | 0.596371 | 4.1:+27339018 | None:intergenic |
CACTCCATTAGTGAAAGTAC+CGG | 0.601548 | 4.1:-27339136 | None:intergenic |
TAAATTGCTTATCCAAAACC+AGG | 0.601587 | 4.1:+27339311 | MS.gene045584:CDS |
GGTATAATTGCTCTGTGGAG+AGG | 0.606231 | 4.1:+27339414 | MS.gene045584:CDS |
GCTCGAACCATGAAGGATGA+GGG | 0.608674 | 4.1:+27339393 | MS.gene045584:CDS |
TGATGGATGATGTGGTCCAT+CGG | 0.611029 | 4.1:-27339034 | None:intergenic |
GGAAAGAAATATGGTTCTGG+CGG | 0.618520 | 4.1:+27341078 | MS.gene045584:CDS |
TCAATTGCTCAGAAGATAGG+TGG | 0.621358 | 4.1:+27339054 | MS.gene045584:CDS |
CTGCAAAGAAGGGTGGTGAG+AGG | 0.621915 | 4.1:+27340143 | MS.gene045584:CDS |
AGAATAGACAAATAGGAGTG+AGG | 0.622653 | 4.1:-27340080 | None:intergenic |
CCGTTTGGCAAATGACGCAA+AGG | 0.622778 | 4.1:+27340120 | MS.gene045584:CDS |
TATCAGATACTTCCCTACTC+AGG | 0.622842 | 4.1:+27339452 | MS.gene045584:CDS |
TGAGCAATTGATGGATGATG+TGG | 0.652110 | 4.1:-27339042 | None:intergenic |
ATAGACAAATAGGAGTGAGG+AGG | 0.664089 | 4.1:-27340077 | None:intergenic |
GTTGGAATTATAGTGTATCG+TGG | 0.683295 | 4.1:+27340253 | MS.gene045584:CDS |
GCAAAGGCTGCAAAGAAGGG+TGG | 0.689413 | 4.1:+27340136 | MS.gene045584:CDS |
ATGAGGGTATAATTGCTCTG+TGG | 0.733403 | 4.1:+27339409 | MS.gene045584:CDS |
GGGACAGTAAATGACGACAG+AGG | 0.743353 | 4.1:-27339186 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAATGAAATTAGAAATTAA+AGG | - | chr4.1:27339931-27339950 | None:intergenic | 15.0% |
!! | ATGAACATTACTAAAATAAT+TGG | - | chr4.1:27340753-27340772 | None:intergenic | 15.0% |
!! | TGAACATTACTAAAATAATT+GGG | - | chr4.1:27340752-27340771 | None:intergenic | 15.0% |
!! | TTGAAACTTTAATTGAATTA+GGG | + | chr4.1:27340690-27340709 | MS.gene045584:intron | 15.0% |
!!! | TGTACAAAATTTGATTTTAA+CGG | + | chr4.1:27340337-27340356 | MS.gene045584:intron | 15.0% |
!! | CTTGAAACTTTAATTGAATT+AGG | + | chr4.1:27340689-27340708 | MS.gene045584:intron | 20.0% |
!! | GAACATTACTAAAATAATTG+GGG | - | chr4.1:27340751-27340770 | None:intergenic | 20.0% |
!!! | AATTTCATTCTTTTCCTTTT+AGG | + | chr4.1:27339940-27339959 | MS.gene045584:intron | 20.0% |
!!! | AATTTTAAAAAAGACAGAGA+TGG | + | chr4.1:27340004-27340023 | MS.gene045584:CDS | 20.0% |
!!! | ATTGAGATTAGCTTATATTT+TGG | + | chr4.1:27339744-27339763 | MS.gene045584:intron | 20.0% |
!!! | CATCATTTTCTTATTATCTA+TGG | + | chr4.1:27340770-27340789 | MS.gene045584:intron | 20.0% |
!!! | GGAATAATTTTAATCTAACA+CGG | - | chr4.1:27340388-27340407 | None:intergenic | 20.0% |
!!! | GTACAAAATTTGATTTTAAC+GGG | + | chr4.1:27340338-27340357 | MS.gene045584:intron | 20.0% |
!!! | TAAAATTATTCCTCTTTTGT+TGG | + | chr4.1:27340396-27340415 | MS.gene045584:intron | 20.0% |
!!! | TTTTAATAGAAAGATGTCTA+GGG | - | chr4.1:27340635-27340654 | None:intergenic | 20.0% |
! | AATAGCAAGGATACAAAAAT+AGG | - | chr4.1:27339793-27339812 | None:intergenic | 25.0% |
! | AATCCAAAGAATAGACAAAT+AGG | - | chr4.1:27340090-27340109 | None:intergenic | 25.0% |
! | AGAAATTTGTGGAAATCTAA+TGG | + | chr4.1:27339591-27339610 | MS.gene045584:intron | 25.0% |
! | AGCAATTTAATTCGTTCAAT+AGG | - | chr4.1:27339300-27339319 | None:intergenic | 25.0% |
! | ATAAGTTATATGCGTTGTAA+GGG | + | chr4.1:27339536-27339555 | MS.gene045584:intron | 25.0% |
! | TTAGATTTCCACAAATTTCT+TGG | - | chr4.1:27339591-27339610 | None:intergenic | 25.0% |
!! | AGAAAATGTTTTGTATGTCT+AGG | - | chr4.1:27339828-27339847 | None:intergenic | 25.0% |
!! | GAAAATGTTTTGTATGTCTA+GGG | - | chr4.1:27339827-27339846 | None:intergenic | 25.0% |
!!! | ACTTTGATTTTATGTTTGTC+AGG | + | chr4.1:27340423-27340442 | MS.gene045584:intron | 25.0% |
!!! | AGATTAGCTTATATTTTGGA+AGG | + | chr4.1:27339748-27339767 | MS.gene045584:intron | 25.0% |
!!! | ATTTTTGATCGATTTTCTGA+TGG | + | chr4.1:27339236-27339255 | MS.gene045584:CDS | 25.0% |
!!! | GATTAGCTTATATTTTGGAA+GGG | + | chr4.1:27339749-27339768 | MS.gene045584:intron | 25.0% |
!!! | GTAAAAGGTGTTTAATAGAA+AGG | - | chr4.1:27340613-27340632 | None:intergenic | 25.0% |
!!! | GTTTTAATAGAAAGATGTCT+AGG | - | chr4.1:27340636-27340655 | None:intergenic | 25.0% |
!!! | TTTGATTTTAACGGGAAATA+TGG | + | chr4.1:27340346-27340365 | MS.gene045584:intron | 25.0% |
!!! | TTTTTGATCGATTTTCTGAT+GGG | + | chr4.1:27339237-27339256 | MS.gene045584:CDS | 25.0% |
AAAATCGATCAAAAATCCAG+CGG | - | chr4.1:27339232-27339251 | None:intergenic | 30.0% | |
ACTCCTATTTGTCTATTCTT+TGG | + | chr4.1:27340084-27340103 | MS.gene045584:CDS | 30.0% | |
CAAAGTAAAACCAACAAAAG+AGG | - | chr4.1:27340409-27340428 | None:intergenic | 30.0% | |
CATAAGTTATATGCGTTGTA+AGG | + | chr4.1:27339535-27339554 | MS.gene045584:intron | 30.0% | |
CTAAAAGAGAGTCAAAATTG+TGG | - | chr4.1:27340728-27340747 | None:intergenic | 30.0% | |
CTTACAACGCATATAACTTA+TGG | - | chr4.1:27339537-27339556 | None:intergenic | 30.0% | |
GGATGTAAATGTTAATAGCA+AGG | - | chr4.1:27339806-27339825 | None:intergenic | 30.0% | |
GTGTTAAACCAAGAAATTTG+TGG | + | chr4.1:27339580-27339599 | MS.gene045584:intron | 30.0% | |
TAAATTGCTTATCCAAAACC+AGG | + | chr4.1:27339311-27339330 | MS.gene045584:CDS | 30.0% | |
TTAACACAATATACACTTCG+AGG | - | chr4.1:27339567-27339586 | None:intergenic | 30.0% | |
TTTAGCAATCTATGATGTCT+AGG | - | chr4.1:27340669-27340688 | None:intergenic | 30.0% | |
TTTGGAAAGAAATATGGTTC+TGG | + | chr4.1:27341075-27341094 | MS.gene045584:CDS | 30.0% | |
! | ATATACACATTACTGATTGC+AGG | - | chr4.1:27340585-27340604 | None:intergenic | 30.0% |
! | ATGGTACTTTTCTTGTTAAC+AGG | + | chr4.1:27340789-27340808 | MS.gene045584:intron | 30.0% |
! | CTATGATGTCTAGGATATAA+AGG | - | chr4.1:27340660-27340679 | None:intergenic | 30.0% |
!! | CTTTTAAGGATTACTTCAAG+AGG | + | chr4.1:27339975-27339994 | MS.gene045584:CDS | 30.0% |
!! | GTCTTGTTTGGAAAGAAATA+TGG | + | chr4.1:27341069-27341088 | MS.gene045584:CDS | 30.0% |
AAAAACTGTCACTGTGATTC+CGG | + | chr4.1:27339659-27339678 | MS.gene045584:intron | 35.0% | |
AAATCGATCAAAAATCCAGC+GGG | - | chr4.1:27339231-27339250 | None:intergenic | 35.0% | |
AAGAAAACCTTACAGTCTGA+TGG | + | chr4.1:27340193-27340212 | MS.gene045584:CDS | 35.0% | |
AATTATACCCTCATCCTTCA+TGG | - | chr4.1:27339403-27339422 | None:intergenic | 35.0% | |
AGAATAGACAAATAGGAGTG+AGG | - | chr4.1:27340083-27340102 | None:intergenic | 35.0% | |
AGATGTTGAATCCACGATAA+AGG | - | chr4.1:27340228-27340247 | None:intergenic | 35.0% | |
AGGTTATCTGAGCCATATAA+GGG | + | chr4.1:27339354-27339373 | MS.gene045584:CDS | 35.0% | |
ATTCAGATTATCACCTGAGT+AGG | - | chr4.1:27339468-27339487 | None:intergenic | 35.0% | |
GATAGGTGGACATTCTTATT+TGG | + | chr4.1:27339068-27339087 | MS.gene045584:CDS | 35.0% | |
GTAATTCCTGTAGTTAGAGT+TGG | - | chr4.1:27339109-27339128 | None:intergenic | 35.0% | |
GTTGGAATTATAGTGTATCG+TGG | + | chr4.1:27340253-27340272 | MS.gene045584:CDS | 35.0% | |
TGTGGTGTTTGTATAAGTAG+AGG | - | chr4.1:27339636-27339655 | None:intergenic | 35.0% | |
TTCAGATTATCACCTGAGTA+GGG | - | chr4.1:27339467-27339486 | None:intergenic | 35.0% | |
! | ACAGTGACAGTTTTTGTATG+TGG | - | chr4.1:27339654-27339673 | None:intergenic | 35.0% |
! | AGAAAGATGTCTAGGGTAAA+AGG | - | chr4.1:27340628-27340647 | None:intergenic | 35.0% |
! | AGAAGAATGATGATGACTTC+TGG | + | chr4.1:27340895-27340914 | MS.gene045584:CDS | 35.0% |
! | GACATTCTTATTTGGTTTCC+AGG | + | chr4.1:27339076-27339095 | MS.gene045584:CDS | 35.0% |
! | GGTACTAAGTCTCTTTTCAA+AGG | + | chr4.1:27340976-27340995 | MS.gene045584:CDS | 35.0% |
! | TTCTTTGCTAGTTTCCTGTT+GGG | + | chr4.1:27340817-27340836 | MS.gene045584:CDS | 35.0% |
! | TTTCCATGTGTTGTCTTGTT+TGG | + | chr4.1:27339693-27339712 | MS.gene045584:intron | 35.0% |
! | TTTCTTTGCTAGTTTCCTGT+TGG | + | chr4.1:27340816-27340835 | MS.gene045584:CDS | 35.0% |
!! | CTCTTTTGGTGATTGAATGT+TGG | + | chr4.1:27339882-27339901 | MS.gene045584:intron | 35.0% |
!! | TTCCATGTGTTGTCTTGTTT+GGG | + | chr4.1:27339694-27339713 | MS.gene045584:intron | 35.0% |
AAAAAGACAGAGATGGCTAC+TGG | + | chr4.1:27340011-27340030 | MS.gene045584:CDS | 40.0% | |
AACCCAAACAAGACAACACA+TGG | - | chr4.1:27339699-27339718 | None:intergenic | 40.0% | |
AGCAAAGTTCAGAGCCTAAA+AGG | - | chr4.1:27339957-27339976 | None:intergenic | 40.0% | |
ATAGACAAATAGGAGTGAGG+AGG | - | chr4.1:27340080-27340099 | None:intergenic | 40.0% | |
ATGAAATGCTCAAAAGTGGC+AGG | + | chr4.1:27339334-27339353 | MS.gene045584:CDS | 40.0% | |
CAAACCATCGTTGCAAAAGA+GGG | + | chr4.1:27340955-27340974 | MS.gene045584:CDS | 40.0% | |
CAGGATGAAATGCTCAAAAG+TGG | + | chr4.1:27339330-27339349 | MS.gene045584:CDS | 40.0% | |
CAGGTTATCTGAGCCATATA+AGG | + | chr4.1:27339353-27339372 | MS.gene045584:CDS | 40.0% | |
CAGTCACCAATTCCCTTATA+TGG | - | chr4.1:27339369-27339388 | None:intergenic | 40.0% | |
CATGGAAAATCTCATGACAC+CGG | - | chr4.1:27339681-27339700 | None:intergenic | 40.0% | |
CCATCAATTGCTCAGAAGAT+AGG | + | chr4.1:27339051-27339070 | MS.gene045584:CDS | 40.0% | |
CCTATCTTCTGAGCAATTGA+TGG | - | chr4.1:27339054-27339073 | None:intergenic | 40.0% | |
GTGTATCGTGGTCTTTACTT+TGG | + | chr4.1:27340265-27340284 | MS.gene045584:CDS | 40.0% | |
TACAGGAATTACTCTACGTC+CGG | + | chr4.1:27339117-27339136 | MS.gene045584:CDS | 40.0% | |
TATCAGATACTTCCCTACTC+AGG | + | chr4.1:27339452-27339471 | MS.gene045584:CDS | 40.0% | |
TCAATTGCTCAGAAGATAGG+TGG | + | chr4.1:27339054-27339073 | MS.gene045584:CDS | 40.0% | |
TCTGAGCCATATAAGGGAAT+TGG | + | chr4.1:27339360-27339379 | MS.gene045584:CDS | 40.0% | |
TGAGAGGCAGTTTAATGGAA+TGG | + | chr4.1:27340159-27340178 | MS.gene045584:CDS | 40.0% | |
TTTGCTGGGAATTTAGCATC+TGG | + | chr4.1:27340040-27340059 | MS.gene045584:CDS | 40.0% | |
! | ATGAGGGTATAATTGCTCTG+TGG | + | chr4.1:27339409-27339428 | MS.gene045584:CDS | 40.0% |
! | CACTCCATTAGTGAAAGTAC+CGG | - | chr4.1:27339139-27339158 | None:intergenic | 40.0% |
! | CACTTTTGAGCATTTCATCC+TGG | - | chr4.1:27339332-27339351 | None:intergenic | 40.0% |
! | GATGCATGTGAATGCTCTTT+TGG | + | chr4.1:27339868-27339887 | MS.gene045584:intron | 40.0% |
! | TGAGCAATTGATGGATGATG+TGG | - | chr4.1:27339045-27339064 | None:intergenic | 40.0% |
! | TGAGCATTTCATCCTGGTTT+TGG | - | chr4.1:27339326-27339345 | None:intergenic | 40.0% |
!! | AAGTCTCTTTTCAAAGGTGC+TGG | + | chr4.1:27340982-27341001 | MS.gene045584:CDS | 40.0% |
!! | GGAAAGAAATATGGTTCTGG+CGG | + | chr4.1:27341078-27341097 | MS.gene045584:CDS | 40.0% |
!! | TATCACAATTGGTGCTGGTT+TGG | + | chr4.1:27340846-27340865 | MS.gene045584:CDS | 40.0% |
!! | TTCTCTGAAACCAGTTGTCT+TGG | + | chr4.1:27340297-27340316 | MS.gene045584:CDS | 40.0% |
!! | TTGATCGATTTTCTGATGGG+AGG | + | chr4.1:27339240-27339259 | MS.gene045584:CDS | 40.0% |
!!! | GGCTCTGAACTTTGCTTTTA+AGG | + | chr4.1:27339961-27339980 | MS.gene045584:intron | 40.0% |
AAACCAGTTGTCTTGGTTGG+TGG | + | chr4.1:27340304-27340323 | MS.gene045584:CDS | 45.0% | |
AACCAGTTGTCTTGGTTGGT+GGG | + | chr4.1:27340305-27340324 | MS.gene045584:CDS | 45.0% | |
ACGTCCGGTACTTTCACTAA+TGG | + | chr4.1:27339132-27339151 | MS.gene045584:CDS | 45.0% | |
ACTAATGGAGTGCAGACTTC+TGG | + | chr4.1:27339147-27339166 | MS.gene045584:CDS | 45.0% | |
AGCAATGCCATCAGACTGTA+AGG | - | chr4.1:27340203-27340222 | None:intergenic | 45.0% | |
CACAGTGTCAATGGGATAAG+AGG | - | chr4.1:27340872-27340891 | None:intergenic | 45.0% | |
CCAAACCATCGTTGCAAAAG+AGG | + | chr4.1:27340954-27340973 | MS.gene045584:CDS | 45.0% | |
CCTTTGCGTCATTTGCCAAA+CGG | - | chr4.1:27340123-27340142 | None:intergenic | 45.0% | |
CTGAAACCAGTTGTCTTGGT+TGG | + | chr4.1:27340301-27340320 | MS.gene045584:CDS | 45.0% | |
CTTCTACGCACAGTGTCAAT+GGG | - | chr4.1:27340880-27340899 | None:intergenic | 45.0% | |
CTTTGCGTCATTTGCCAAAC+GGG | - | chr4.1:27340122-27340141 | None:intergenic | 45.0% | |
GGATTCAACATCTCGTGTGT+TGG | + | chr4.1:27340235-27340254 | MS.gene045584:CDS | 45.0% | |
GGTATAATTGCTCTGTGGAG+AGG | + | chr4.1:27339414-27339433 | MS.gene045584:CDS | 45.0% | |
TCTTCTACGCACAGTGTCAA+TGG | - | chr4.1:27340881-27340900 | None:intergenic | 45.0% | |
TTACAGTCTGATGGCATTGC+TGG | + | chr4.1:27340202-27340221 | MS.gene045584:CDS | 45.0% | |
TTAGCGCCAACTCTAACTAC+AGG | + | chr4.1:27339100-27339119 | MS.gene045584:CDS | 45.0% | |
! | AACATATTGCGTGCTGTTGC+AGG | + | chr4.1:27341009-27341028 | MS.gene045584:CDS | 45.0% |
! | AGTACCCTCTTTTGCAACGA+TGG | - | chr4.1:27340962-27340981 | None:intergenic | 45.0% |
! | CCTCTTTTGCAACGATGGTT+TGG | - | chr4.1:27340957-27340976 | None:intergenic | 45.0% |
! | CTGTTTTGCTCGAACCATGA+AGG | + | chr4.1:27339386-27339405 | MS.gene045584:CDS | 45.0% |
! | TGATGGATGATGTGGTCCAT+CGG | - | chr4.1:27339037-27339056 | None:intergenic | 45.0% |
! | TGCTAGTTTCCTGTTGGGAT+GGG | + | chr4.1:27340822-27340841 | MS.gene045584:CDS | 45.0% |
! | TTGCTAGTTTCCTGTTGGGA+TGG | + | chr4.1:27340821-27340840 | MS.gene045584:CDS | 45.0% |
! | TTGGGATGGGGTATCACAAT+TGG | + | chr4.1:27340835-27340854 | MS.gene045584:CDS | 45.0% |
!! | AAGAAATATGGTTCTGGCGG+CGG | + | chr4.1:27341081-27341100 | MS.gene045584:CDS | 45.0% |
ACAGAGATGGCTACTGGAAG+TGG | + | chr4.1:27340017-27340036 | MS.gene045584:CDS | 50.0% | |
ATCCCACCAACCAAGACAAC+TGG | - | chr4.1:27340310-27340329 | None:intergenic | 50.0% | |
CCGTTTGGCAAATGACGCAA+AGG | + | chr4.1:27340120-27340139 | MS.gene045584:CDS | 50.0% | |
CGTCATTTGCCAAACGGGTA+CGG | - | chr4.1:27340117-27340136 | None:intergenic | 50.0% | |
GACGCAAAGGCTGCAAAGAA+GGG | + | chr4.1:27340133-27340152 | MS.gene045584:CDS | 50.0% | |
GCTCGAACCATGAAGGATGA+GGG | + | chr4.1:27339393-27339412 | MS.gene045584:CDS | 50.0% | |
GCTGGGAATTTAGCATCTGG+TGG | + | chr4.1:27340043-27340062 | MS.gene045584:CDS | 50.0% | |
GGGACAGTAAATGACGACAG+AGG | - | chr4.1:27339189-27339208 | None:intergenic | 50.0% | |
GGTGGTGAGAGGCAGTTTAA+TGG | + | chr4.1:27340154-27340173 | MS.gene045584:CDS | 50.0% | |
GTCATTTGCCAAACGGGTAC+GGG | - | chr4.1:27340116-27340135 | None:intergenic | 50.0% | |
GTCCTTTCTCTGCTGGAGAA+GGG | - | chr4.1:27339209-27339228 | None:intergenic | 50.0% | |
TGACGCAAAGGCTGCAAAGA+AGG | + | chr4.1:27340132-27340151 | MS.gene045584:CDS | 50.0% | |
TGCTCGAACCATGAAGGATG+AGG | + | chr4.1:27339392-27339411 | MS.gene045584:CDS | 50.0% | |
TGGTTATGACAAGCTGCAGC+TGG | + | chr4.1:27341047-27341066 | MS.gene045584:CDS | 50.0% | |
TTGTGATACCCCATCCCAAC+AGG | - | chr4.1:27340834-27340853 | None:intergenic | 50.0% | |
! | GCTAGTTTCCTGTTGGGATG+GGG | + | chr4.1:27340823-27340842 | MS.gene045584:CDS | 50.0% |
! | TGGAGTGCAGACTTCTGGTT+TGG | + | chr4.1:27339152-27339171 | MS.gene045584:CDS | 50.0% |
! | TGGGGTATCACAATTGGTGC+TGG | + | chr4.1:27340841-27340860 | MS.gene045584:CDS | 50.0% |
!! | AAGCTGCAGCTGGTCTTGTT+TGG | + | chr4.1:27341057-27341076 | MS.gene045584:CDS | 50.0% |
!! | GCTACTGGAAGTGGTTTGCT+GGG | + | chr4.1:27340026-27340045 | MS.gene045584:CDS | 50.0% |
CTGCAAAGAAGGGTGGTGAG+AGG | + | chr4.1:27340143-27340162 | MS.gene045584:CDS | 55.0% | |
GCAAAGGCTGCAAAGAAGGG+TGG | + | chr4.1:27340136-27340155 | MS.gene045584:CDS | 55.0% | |
GGATTATGCCCGTACCCGTT+TGG | + | chr4.1:27340105-27340124 | MS.gene045584:CDS | 55.0% | |
GGTCCTTTCTCTGCTGGAGA+AGG | - | chr4.1:27339210-27339229 | None:intergenic | 55.0% | |
GTCCCTTCTCCAGCAGAGAA+AGG | + | chr4.1:27339204-27339223 | MS.gene045584:CDS | 55.0% | |
GTTAGAGTTGGCGCTAAGCC+TGG | - | chr4.1:27339097-27339116 | None:intergenic | 55.0% | |
TAGCATCTGGTGGAGCTGCT+GGG | + | chr4.1:27340053-27340072 | MS.gene045584:CDS | 55.0% | |
TTAGCATCTGGTGGAGCTGC+TGG | + | chr4.1:27340052-27340071 | MS.gene045584:CDS | 55.0% | |
! | GGCTACTGGAAGTGGTTTGC+TGG | + | chr4.1:27340025-27340044 | MS.gene045584:CDS | 55.0% |
!! | GGCATTGCTGGCCTTTATCG+TGG | + | chr4.1:27340214-27340233 | MS.gene045584:CDS | 55.0% |
!! | TGTCTTGGTTGGTGGGATGC+AGG | + | chr4.1:27340312-27340331 | MS.gene045584:CDS | 55.0% |
AGCATCTGGTGGAGCTGCTG+GGG | + | chr4.1:27340054-27340073 | MS.gene045584:CDS | 60.0% | |
! | TTGCGTGCTGTTGCAGGTGC+TGG | + | chr4.1:27341015-27341034 | MS.gene045584:CDS | 60.0% |
CCAGCAGAGAAAGGACCCGC+TGG | + | chr4.1:27339213-27339232 | MS.gene045584:CDS | 65.0% | |
CCAGCGGGTCCTTTCTCTGC+TGG | - | chr4.1:27339216-27339235 | None:intergenic | 65.0% | |
!! | GCAGGTGCTGGTGTGCTTGC+TGG | + | chr4.1:27341027-27341046 | MS.gene045584:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 27339030 | 27341107 | 27339030 | ID=MS.gene045584 |
chr4.1 | mRNA | 27339030 | 27341107 | 27339030 | ID=MS.gene045584.t1;Parent=MS.gene045584 |
chr4.1 | exon | 27339030 | 27339473 | 27339030 | ID=MS.gene045584.t1.exon1;Parent=MS.gene045584.t1 |
chr4.1 | CDS | 27339030 | 27339473 | 27339030 | ID=cds.MS.gene045584.t1;Parent=MS.gene045584.t1 |
chr4.1 | exon | 27339962 | 27340333 | 27339962 | ID=MS.gene045584.t1.exon2;Parent=MS.gene045584.t1 |
chr4.1 | CDS | 27339962 | 27340333 | 27339962 | ID=cds.MS.gene045584.t1;Parent=MS.gene045584.t1 |
chr4.1 | exon | 27340811 | 27341107 | 27340811 | ID=MS.gene045584.t1.exon3;Parent=MS.gene045584.t1 |
chr4.1 | CDS | 27340811 | 27341107 | 27340811 | ID=cds.MS.gene045584.t1;Parent=MS.gene045584.t1 |
Gene Sequence |
Protein sequence |