Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79838.t1 | XP_013444760.1 | 81 | 179 | 34 | 0 | 4 | 182 | 51 | 229 | 6.70E-76 | 293.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79838.t1 | A0A072TZ19 | 81.0 | 179 | 34 | 0 | 4 | 182 | 51 | 229 | 4.9e-76 | 293.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79838 | MS.gene82915 | PPI |
| MS.gene79838 | MS.gene043435 | PPI |
| MS.gene60589 | MS.gene79838 | PPI |
| MS.gene79838 | MS.gene001687 | PPI |
| MS.gene79838 | MS.gene005865 | PPI |
| MS.gene79838 | MS.gene066059 | PPI |
| MS.gene79838 | MS.gene21110 | PPI |
| MS.gene79838 | MS.gene036564 | PPI |
| MS.gene79838 | MS.gene026968 | PPI |
| MS.gene31468 | MS.gene79838 | PPI |
| MS.gene005399 | MS.gene79838 | PPI |
| MS.gene79838 | MS.gene60861 | PPI |
| MS.gene79838 | MS.gene028903 | PPI |
| MS.gene79838 | MS.gene21227 | PPI |
| MS.gene79838 | MS.gene035256 | PPI |
| MS.gene79838 | MS.gene20938 | PPI |
| MS.gene34167 | MS.gene79838 | PPI |
| MS.gene21111 | MS.gene79838 | PPI |
| MS.gene79838 | MS.gene055808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79838.t1 | MTR_8g028485 | 96.648 | 179 | 6 | 0 | 4 | 182 | 51 | 229 | 1.79e-131 | 367 |
| MS.gene79838.t1 | MTR_8g087440 | 97.207 | 179 | 5 | 0 | 4 | 182 | 51 | 229 | 2.58e-131 | 367 |
| MS.gene79838.t1 | MTR_7g117435 | 86.861 | 137 | 18 | 0 | 1 | 137 | 1 | 137 | 1.83e-80 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79838.t1 | AT1G14620 | 72.778 | 180 | 49 | 0 | 3 | 182 | 54 | 233 | 4.88e-101 | 291 |
| MS.gene79838.t1 | AT1G14620 | 71.429 | 133 | 38 | 0 | 3 | 135 | 54 | 186 | 1.21e-69 | 211 |
Find 31 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTATGGTGATGCTTA+TGG | 0.140363 | 8.2:+68369565 | MS.gene79838:CDS |
| TTCTCTATGGTGATGCTTAT+GGG | 0.182684 | 8.2:+68369566 | MS.gene79838:CDS |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 8.2:-68370003 | None:intergenic |
| AGACTTTACCTTCTTCTCTA+TGG | 0.321156 | 8.2:+68369553 | MS.gene79838:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 8.2:-68368926 | None:intergenic |
| GCAAATGCGAGGACTTTGTT+TGG | 0.409693 | 8.2:+68370324 | MS.gene79838:CDS |
| CAAATGCGAGGACTTTGTTT+GGG | 0.426350 | 8.2:+68370325 | MS.gene79838:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 8.2:+68370346 | MS.gene79838:CDS |
| AAATGCTCCGATGGCTCATA+TGG | 0.433853 | 8.2:+68369972 | MS.gene79838:CDS |
| GGACTTTGTTTGGGTGACTA+AGG | 0.440940 | 8.2:+68370334 | MS.gene79838:CDS |
| TCTCTTTAGGTCACTACAAA+GGG | 0.480712 | 8.2:+68369519 | MS.gene79838:intron |
| TGCCACACAGGCTTTCCACT+TGG | 0.491497 | 8.2:-68369592 | None:intergenic |
| TTTCAATGGCTAGGTTTCGA+TGG | 0.497557 | 8.2:+68368109 | None:intergenic |
| AAGCATCACCATAGAGAAGA+AGG | 0.501775 | 8.2:-68369561 | None:intergenic |
| TTTATGGGGTTTCAATGGCT+AGG | 0.507564 | 8.2:+68368100 | None:intergenic |
| TCTCTATGGTGATGCTTATG+GGG | 0.516069 | 8.2:+68369567 | MS.gene79838:CDS |
| GGATCTGTCTAGAAATTCAT+CGG | 0.534929 | 8.2:-68368157 | None:intergenic |
| GTCTCTTTAGGTCACTACAA+AGG | 0.536519 | 8.2:+68369518 | MS.gene79838:intron |
| GATCTGTCTAGAAATTCATC+GGG | 0.564894 | 8.2:-68368156 | None:intergenic |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 8.2:+68370000 | MS.gene79838:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 8.2:-68368932 | None:intergenic |
| ATCAGAGGATACTATGCGTA+AGG | 0.577968 | 8.2:+68369636 | MS.gene79838:CDS |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 8.2:+68368166 | MS.gene79838:CDS |
| CTCCAAGTGGAAAGCCTGTG+TGG | 0.603277 | 8.2:+68369590 | MS.gene79838:CDS |
| TGAGTACCCATACCTTGCAT+CGG | 0.607480 | 8.2:-68368178 | None:intergenic |
| CAATGGCTAGGTTTCGATGG+CGG | 0.614979 | 8.2:+68368112 | None:intergenic |
| TGAACAACCATATGAGCCAT+CGG | 0.625422 | 8.2:-68369979 | None:intergenic |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 8.2:+68368948 | MS.gene79838:CDS |
| GTTCGACATTGGCAAATGCG+AGG | 0.666005 | 8.2:+68370313 | MS.gene79838:CDS |
| TCTGCGTTGAAATCAGTCGT+AGG | 0.666687 | 8.2:+68369922 | MS.gene79838:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 8.2:+68369577 | MS.gene79838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTTTCGTTTAT+GGG | + | chr8.2:68368434-68368453 | MS.gene79838:intron | 10.0% |
| !! | ACACGATAAAAAAATAATAA+AGG | - | chr8.2:68369247-68369266 | None:intergenic | 15.0% |
| !!! | CTTTTATATTTTTTCGTTTA+TGG | + | chr8.2:68368433-68368452 | MS.gene79838:intron | 15.0% |
| !! | AAATATCAGTTACTTGTTTA+CGG | - | chr8.2:68368744-68368763 | None:intergenic | 20.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | + | chr8.2:68369016-68369035 | MS.gene79838:intron | 20.0% |
| !! | TCTATTATTATCTAAGAAAC+AGG | - | chr8.2:68369361-68369380 | None:intergenic | 20.0% |
| !! | TGAAATGAAACATTTACTAA+TGG | - | chr8.2:68369011-68369030 | None:intergenic | 20.0% |
| !!! | ATAAATCAGAAGTATTGAAA+AGG | - | chr8.2:68370196-68370215 | None:intergenic | 20.0% |
| !!! | CATTGATTAATTTAAAAGAG+AGG | + | chr8.2:68368237-68368256 | MS.gene79838:intron | 20.0% |
| !!! | TTCCAATATGTTATTTCTAT+CGG | + | chr8.2:68370094-68370113 | MS.gene79838:intron | 20.0% |
| !!! | TTTTACTATAGATGTTCTTA+TGG | + | chr8.2:68369189-68369208 | MS.gene79838:intron | 20.0% |
| ! | AAACCAAGCTAATAATTCAT+TGG | - | chr8.2:68369104-68369123 | None:intergenic | 25.0% |
| ! | AACTAATAAACTTGAATAGC+CGG | - | chr8.2:68368383-68368402 | None:intergenic | 25.0% |
| ! | AAGATATATGAAATACGAAG+GGG | - | chr8.2:68369683-68369702 | None:intergenic | 25.0% |
| ! | AATATCAGTTACTTGTTTAC+GGG | - | chr8.2:68368743-68368762 | None:intergenic | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | + | chr8.2:68368873-68368892 | MS.gene79838:intron | 25.0% |
| ! | ATTAGCAATGATAAAGCAAA+TGG | - | chr8.2:68369432-68369451 | None:intergenic | 25.0% |
| ! | GAAGATATATGAAATACGAA+GGG | - | chr8.2:68369684-68369703 | None:intergenic | 25.0% |
| ! | TACCGATAGAAATAACATAT+TGG | - | chr8.2:68370099-68370118 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | + | chr8.2:68368874-68368893 | MS.gene79838:intron | 25.0% |
| ! | TTCGTATTTCATATATCTTC+CGG | + | chr8.2:68369684-68369703 | MS.gene79838:intron | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | + | chr8.2:68369621-68369640 | MS.gene79838:CDS | 25.0% |
| !! | ATATTTTATGAAGAGTAACG+TGG | + | chr8.2:68368758-68368777 | MS.gene79838:intron | 25.0% |
| !! | CTTTCGAATACATATTTTGT+CGG | + | chr8.2:68369949-68369968 | MS.gene79838:CDS | 25.0% |
| !!! | AGTATTGAAAAGGCTAATTT+TGG | - | chr8.2:68370186-68370205 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGCTTAT+AGG | + | chr8.2:68370029-68370048 | MS.gene79838:intron | 25.0% |
| !!! | CACATTTCAATCTTTTTTGT+AGG | - | chr8.2:68368626-68368645 | None:intergenic | 25.0% |
| !!! | GTGTTTTAGCTTTGTAATAT+TGG | + | chr8.2:68369263-68369282 | MS.gene79838:intron | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | - | chr8.2:68369622-68369641 | None:intergenic | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | + | chr8.2:68370129-68370148 | MS.gene79838:intron | 25.0% |
| AAAATTGTTTACTTTCCAGG+GGG | + | chr8.2:68368876-68368895 | MS.gene79838:intron | 30.0% | |
| AAATATATCAATGTGAGGAC+AGG | + | chr8.2:68369320-68369339 | MS.gene79838:intron | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | - | chr8.2:68368980-68368999 | None:intergenic | 30.0% | |
| ACTATAGATGTTCTTATGGA+AGG | + | chr8.2:68369193-68369212 | MS.gene79838:intron | 30.0% | |
| AGAGACATGAAAACTTAATC+AGG | + | chr8.2:68369406-68369425 | MS.gene79838:intron | 30.0% | |
| AGATGAAAAGAAGGATCTAT+TGG | - | chr8.2:68368847-68368866 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | - | chr8.2:68368856-68368875 | None:intergenic | 30.0% | |
| CTATAGTTATATCATCGCTA+AGG | - | chr8.2:68369726-68369745 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | + | chr8.2:68369315-68369334 | MS.gene79838:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | + | chr8.2:68368875-68368894 | MS.gene79838:intron | 30.0% | |
| GGAAGATATATGAAATACGA+AGG | - | chr8.2:68369685-68369704 | None:intergenic | 30.0% | |
| GTAAGGTGAACATTCTTATA+TGG | + | chr8.2:68369653-68369672 | MS.gene79838:intron | 30.0% | |
| TAAAACCACACCAAAGAAAA+AGG | - | chr8.2:68369166-68369185 | None:intergenic | 30.0% | |
| TACTTCAATCTACTATTGGA+AGG | + | chr8.2:68370063-68370082 | MS.gene79838:intron | 30.0% | |
| TATGCTTATAGGAATTTGTG+TGG | + | chr8.2:68370040-68370059 | MS.gene79838:intron | 30.0% | |
| TCTCCAATGAATTATTAGCT+TGG | + | chr8.2:68369098-68369117 | MS.gene79838:intron | 30.0% | |
| ! | ACTTCTGATTTATTTCTCTG+TGG | + | chr8.2:68370203-68370222 | MS.gene79838:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | - | chr8.2:68368945-68368964 | None:intergenic | 30.0% |
| !! | TTATTTCTATCGGTATGTGT+TGG | + | chr8.2:68370104-68370123 | MS.gene79838:intron | 30.0% |
| !!! | TTTTTTCGTTTATGGGTTGA+TGG | + | chr8.2:68368441-68368460 | MS.gene79838:intron | 30.0% |
| AAAATAAAGCAGCAGAAACG+TGG | - | chr8.2:68368354-68368373 | None:intergenic | 35.0% | |
| AGACTTTACCTTCTTCTCTA+TGG | + | chr8.2:68369553-68369572 | MS.gene79838:CDS | 35.0% | |
| AGAGGATATAGACAAAAGCT+TGG | - | chr8.2:68368818-68368837 | None:intergenic | 35.0% | |
| AGGATCTATTGGTATTTGAG+AGG | - | chr8.2:68368836-68368855 | None:intergenic | 35.0% | |
| CAACATGCACTATGCAATAA+AGG | - | chr8.2:68369849-68369868 | None:intergenic | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | + | chr8.2:68368948-68368967 | MS.gene79838:CDS | 35.0% | |
| GATCTGTCTAGAAATTCATC+GGG | - | chr8.2:68368159-68368178 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | + | chr8.2:68370302-68370321 | MS.gene79838:CDS | 35.0% | |
| GGATCTGTCTAGAAATTCAT+CGG | - | chr8.2:68368160-68368179 | None:intergenic | 35.0% | |
| GTGGTACTTCAATCTACTAT+TGG | + | chr8.2:68370059-68370078 | MS.gene79838:intron | 35.0% | |
| TCAAATGAGTGTGTGTTCAT+AGG | + | chr8.2:68368785-68368804 | MS.gene79838:intron | 35.0% | |
| TCGTCAAATAGTTGCTATAG+TGG | + | chr8.2:68369809-68369828 | MS.gene79838:intron | 35.0% | |
| TCTCTTTAGGTCACTACAAA+GGG | + | chr8.2:68369519-68369538 | MS.gene79838:intron | 35.0% | |
| TGAACACACACTCATTTGAT+AGG | - | chr8.2:68368784-68368803 | None:intergenic | 35.0% | |
| TGTACAACCAAACAAAGCAA+AGG | - | chr8.2:68370155-68370174 | None:intergenic | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | + | chr8.2:68369158-68369177 | MS.gene79838:intron | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | + | chr8.2:68370017-68370036 | MS.gene79838:CDS | 35.0% |
| ! | GAGCAAATGTCCTTTTTCTT+TGG | + | chr8.2:68369153-68369172 | MS.gene79838:intron | 35.0% |
| ! | TTAAAAAACTCAGCTTGCTC+AGG | - | chr8.2:68370380-68370399 | None:intergenic | 35.0% |
| ! | TTCTCTATGGTGATGCTTAT+GGG | + | chr8.2:68369566-68369585 | MS.gene79838:CDS | 35.0% |
| ! | TTGGTAGTAGCATTTCTCAT+CGG | - | chr8.2:68368289-68368308 | None:intergenic | 35.0% |
| !! | CTTTTGCTACTTGTCTCTTT+AGG | + | chr8.2:68369506-68369525 | MS.gene79838:intron | 35.0% |
| !!! | CGTTTCTGCTGCTTTATTTT+TGG | + | chr8.2:68368354-68368373 | MS.gene79838:intron | 35.0% |
| AAGCATCACCATAGAGAAGA+AGG | - | chr8.2:68369564-68369583 | None:intergenic | 40.0% | |
| ATCAGAGGATACTATGCGTA+AGG | + | chr8.2:68369636-68369655 | MS.gene79838:CDS | 40.0% | |
| CTGACAGAAGATTTGAGCAA+AGG | - | chr8.2:68370255-68370274 | None:intergenic | 40.0% | |
| CTTCAGAGATTATTGCTGTG+TGG | + | chr8.2:68369474-68369493 | MS.gene79838:intron | 40.0% | |
| GAGGTAAGTGATGACAGAAA+TGG | + | chr8.2:68368256-68368275 | MS.gene79838:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | + | chr8.2:68370346-68370365 | MS.gene79838:CDS | 40.0% | |
| GTATAGTTGAAGGATGGTGA+TGG | + | chr8.2:68368492-68368511 | MS.gene79838:intron | 40.0% | |
| GTCTCTTTAGGTCACTACAA+AGG | + | chr8.2:68369518-68369537 | MS.gene79838:intron | 40.0% | |
| TATCAATGTGAGGACAGGAT+AGG | + | chr8.2:68369325-68369344 | MS.gene79838:intron | 40.0% | |
| TGAACAACCATATGAGCCAT+CGG | - | chr8.2:68369982-68370001 | None:intergenic | 40.0% | |
| TGGTTGTAAAGATGAGGAAG+AGG | + | chr8.2:68368461-68368480 | MS.gene79838:intron | 40.0% | |
| TTGGCTGTATAGTTGAAGGA+TGG | + | chr8.2:68368486-68368505 | MS.gene79838:intron | 40.0% | |
| ! | CAAATGCGAGGACTTTGTTT+GGG | + | chr8.2:68370325-68370344 | MS.gene79838:CDS | 40.0% |
| ! | CTTCTCTATGGTGATGCTTA+TGG | + | chr8.2:68369565-68369584 | MS.gene79838:CDS | 40.0% |
| ! | TAAAGATGAGGAAGAGGTGT+TGG | + | chr8.2:68368467-68368486 | MS.gene79838:intron | 40.0% |
| ! | TCTAAGAAACAGGAGAGCAT+TGG | - | chr8.2:68369351-68369370 | None:intergenic | 40.0% |
| ! | TCTCTATGGTGATGCTTATG+GGG | + | chr8.2:68369567-68369586 | MS.gene79838:CDS | 40.0% |
| ! | TGATGGATATGGCAGGTATT+CGG | + | chr8.2:68368533-68368552 | MS.gene79838:intron | 40.0% |
| ! | TTGTAGGCCTTTGCTTTGTT+TGG | + | chr8.2:68370145-68370164 | MS.gene79838:intron | 40.0% |
| ! | TTGTTTACGGGCTAAACAAG+TGG | - | chr8.2:68368731-68368750 | None:intergenic | 40.0% |
| !! | CTTCCGGTGTTGTTAAATAG+CGG | + | chr8.2:68369700-68369719 | MS.gene79838:intron | 40.0% |
| !! | GATGGAGGTTTTGATGGATA+TGG | + | chr8.2:68368522-68368541 | MS.gene79838:intron | 40.0% |
| !! | GGTTGATGGTTGTAAAGATG+AGG | + | chr8.2:68368455-68368474 | MS.gene79838:intron | 40.0% |
| !! | GGTTTAGATGGAGGTTTTGA+TGG | + | chr8.2:68368516-68368535 | MS.gene79838:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | - | chr8.2:68369607-68369626 | None:intergenic | 40.0% |
| !!! | GCTGCTTTATTTTTGGCTAC+CGG | + | chr8.2:68368361-68368380 | MS.gene79838:intron | 40.0% |
| AAATGCTCCGATGGCTCATA+TGG | + | chr8.2:68369972-68369991 | MS.gene79838:CDS | 45.0% | |
| ACAGATCCGATGCAAGGTAT+GGG | + | chr8.2:68368172-68368191 | MS.gene79838:intron | 45.0% | |
| AGGCCGCTATTTAACAACAC+CGG | - | chr8.2:68369706-68369725 | None:intergenic | 45.0% | |
| AGGTATGGGTACTCAAGAGT+AGG | + | chr8.2:68368186-68368205 | MS.gene79838:intron | 45.0% | |
| ATGCTGTCCTCATCTTCCTT+TGG | + | chr8.2:68369127-68369146 | MS.gene79838:intron | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | - | chr8.2:68370006-68370025 | None:intergenic | 45.0% | |
| GATGGATATGGCAGGTATTC+GGG | + | chr8.2:68368534-68368553 | MS.gene79838:intron | 45.0% | |
| GCAAATGCGAGGACTTTGTT+TGG | + | chr8.2:68370324-68370343 | MS.gene79838:CDS | 45.0% | |
| TCTGCGTTGAAATCAGTCGT+AGG | + | chr8.2:68369922-68369941 | MS.gene79838:CDS | 45.0% | |
| TGAGTACCCATACCTTGCAT+CGG | - | chr8.2:68368181-68368200 | None:intergenic | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | + | chr8.2:68368881-68368900 | MS.gene79838:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | + | chr8.2:68368166-68368185 | MS.gene79838:CDS | 45.0% | |
| ! | GGACTTTGTTTGGGTGACTA+AGG | + | chr8.2:68370334-68370353 | MS.gene79838:CDS | 45.0% |
| ! | TCGCTGGATGAAGGTTTTCA+TGG | + | chr8.2:68368589-68368608 | MS.gene79838:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | + | chr8.2:68369963-68369982 | MS.gene79838:CDS | 45.0% |
| !! | GAGGTTTTGATGGATATGGC+AGG | + | chr8.2:68368526-68368545 | MS.gene79838:intron | 45.0% |
| !! | GATGGTGATGGTGGTTTAGA+TGG | + | chr8.2:68368504-68368523 | MS.gene79838:intron | 45.0% |
| !! | GGTGTTGGCTGTATAGTTGA+AGG | + | chr8.2:68368482-68368501 | MS.gene79838:intron | 45.0% |
| !! | TAGTTGAAGGATGGTGATGG+TGG | + | chr8.2:68368495-68368514 | MS.gene79838:intron | 45.0% |
| AGGACATTTGCTCGCTCCAA+AGG | - | chr8.2:68369146-68369165 | None:intergenic | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | + | chr8.2:68370000-68370019 | MS.gene79838:CDS | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | - | chr8.2:68368894-68368913 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | + | chr8.2:68368171-68368190 | MS.gene79838:intron | 50.0% | |
| GTGAACACACGCGCATGTAT+TGG | + | chr8.2:68368327-68368346 | MS.gene79838:intron | 50.0% | |
| GTTCGACATTGGCAAATGCG+AGG | + | chr8.2:68370313-68370332 | MS.gene79838:CDS | 50.0% | |
| TATGGCAGGTATTCGGGAAG+TGG | + | chr8.2:68368540-68368559 | MS.gene79838:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | - | chr8.2:68368935-68368954 | None:intergenic | 50.0% | |
| ! | CTGTGTAGTGTTGCTATCGC+TGG | + | chr8.2:68368573-68368592 | MS.gene79838:intron | 50.0% |
| ! | GTGTTGCTATCGCTGGATGA+AGG | + | chr8.2:68368580-68368599 | MS.gene79838:intron | 50.0% |
| !! | GGTGATGGTGGTTTAGATGG+AGG | + | chr8.2:68368507-68368526 | MS.gene79838:intron | 50.0% |
| CTCCAAGTGGAAAGCCTGTG+TGG | + | chr8.2:68369590-68369609 | MS.gene79838:CDS | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | + | chr8.2:68369577-68369596 | MS.gene79838:CDS | 55.0% | |
| GCAGGTATTCGGGAAGTGGA+CGG | + | chr8.2:68368544-68368563 | MS.gene79838:intron | 55.0% | |
| GCTCGCTCCAAAGGAAGATG+AGG | - | chr8.2:68369137-68369156 | None:intergenic | 55.0% | |
| TATTCGGGAAGTGGACGGTG+AGG | + | chr8.2:68368549-68368568 | MS.gene79838:intron | 55.0% | |
| TGCCACACAGGCTTTCCACT+TGG | - | chr8.2:68369595-68369614 | None:intergenic | 55.0% | |
| ! | GTGTGTTCACGAGAGAGCGT+TGG | - | chr8.2:68368317-68368336 | None:intergenic | 55.0% |
| !! | CGAGAGAGCGTTGGAGCGTT+TGG | - | chr8.2:68368308-68368327 | None:intergenic | 60.0% |
| GCTTCGGTGATTCGCGGTGC+TGG | - | chr8.2:68368929-68368948 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 68368114 | 68370418 | 68368114 | ID=MS.gene79838 |
| chr8.2 | mRNA | 68368114 | 68370418 | 68368114 | ID=MS.gene79838.t1;Parent=MS.gene79838 |
| chr8.2 | exon | 68368114 | 68368187 | 68368114 | ID=MS.gene79838.t1.exon1;Parent=MS.gene79838.t1 |
| chr8.2 | CDS | 68368114 | 68368187 | 68368114 | ID=cds.MS.gene79838.t1;Parent=MS.gene79838.t1 |
| chr8.2 | exon | 68368895 | 68368969 | 68368895 | ID=MS.gene79838.t1.exon2;Parent=MS.gene79838.t1 |
| chr8.2 | CDS | 68368895 | 68368969 | 68368895 | ID=cds.MS.gene79838.t1;Parent=MS.gene79838.t1 |
| chr8.2 | exon | 68369528 | 68369657 | 68369528 | ID=MS.gene79838.t1.exon3;Parent=MS.gene79838.t1 |
| chr8.2 | CDS | 68369528 | 68369657 | 68369528 | ID=cds.MS.gene79838.t1;Parent=MS.gene79838.t1 |
| chr8.2 | exon | 68369913 | 68370038 | 68369913 | ID=MS.gene79838.t1.exon4;Parent=MS.gene79838.t1 |
| chr8.2 | CDS | 68369913 | 68370038 | 68369913 | ID=cds.MS.gene79838.t1;Parent=MS.gene79838.t1 |
| chr8.2 | exon | 68370275 | 68370418 | 68370275 | ID=MS.gene79838.t1.exon5;Parent=MS.gene79838.t1 |
| chr8.2 | CDS | 68370275 | 68370418 | 68370275 | ID=cds.MS.gene79838.t1;Parent=MS.gene79838.t1 |
| Gene Sequence |
| Protein sequence |
