Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79844.t1 | XP_013444773.1 | 98.7 | 223 | 2 | 1 | 2 | 223 | 116 | 338 | 1.20E-87 | 332.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79844.t1 | O04609 | 55.0 | 189 | 70 | 2 | 17 | 202 | 105 | 281 | 9.6e-49 | 194.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79844.t1 | A0A072TPN3 | 98.7 | 223 | 2 | 1 | 2 | 223 | 116 | 338 | 8.8e-88 | 332.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene79844.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene79844 | -0.808885 | 2.49E-50 | -1.69E-46 |
MS.gene049312 | MS.gene79844 | 0.803417 | 3.52E-49 | -1.69E-46 |
MS.gene050170 | MS.gene79844 | -0.820945 | 5.24E-53 | -1.69E-46 |
MS.gene050496 | MS.gene79844 | -0.801397 | 9.18E-49 | -1.69E-46 |
MS.gene050504 | MS.gene79844 | -0.804796 | 1.82E-49 | -1.69E-46 |
MS.gene050612 | MS.gene79844 | -0.806518 | 7.91E-50 | -1.69E-46 |
MS.gene050868 | MS.gene79844 | -0.802687 | 4.98E-49 | -1.69E-46 |
MS.gene050871 | MS.gene79844 | -0.801787 | 7.64E-49 | -1.69E-46 |
MS.gene051364 | MS.gene79844 | 0.810789 | 9.68E-51 | -1.69E-46 |
MS.gene051366 | MS.gene79844 | 0.803925 | 2.76E-49 | -1.69E-46 |
MS.gene052966 | MS.gene79844 | -0.800336 | 1.51E-48 | -1.69E-46 |
MS.gene05470 | MS.gene79844 | -0.805623 | 1.22E-49 | -1.69E-46 |
MS.gene055202 | MS.gene79844 | 0.803906 | 2.79E-49 | -1.69E-46 |
MS.gene05589 | MS.gene79844 | -0.830224 | 3.31E-55 | -1.69E-46 |
MS.gene056504 | MS.gene79844 | -0.823715 | 1.19E-53 | -1.69E-46 |
MS.gene056550 | MS.gene79844 | 0.809461 | 1.87E-50 | -1.69E-46 |
MS.gene058334 | MS.gene79844 | 0.827503 | 1.51E-54 | -1.69E-46 |
MS.gene058544 | MS.gene79844 | -0.801274 | 9.73E-49 | -1.69E-46 |
MS.gene059865 | MS.gene79844 | -0.806117 | 9.61E-50 | -1.69E-46 |
MS.gene060595 | MS.gene79844 | 0.813797 | 2.13E-51 | -1.69E-46 |
MS.gene060762 | MS.gene79844 | -0.801775 | 7.68E-49 | -1.69E-46 |
MS.gene06077 | MS.gene79844 | -0.818901 | 1.54E-52 | -1.69E-46 |
MS.gene060982 | MS.gene79844 | -0.812245 | 4.67E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79844.t1 | MTR_8g028565 | 97.758 | 223 | 4 | 1 | 2 | 223 | 116 | 338 | 3.34e-164 | 456 |
MS.gene79844.t1 | MTR_7g079040 | 61.905 | 210 | 58 | 4 | 10 | 218 | 124 | 312 | 1.02e-82 | 249 |
MS.gene79844.t1 | MTR_1g099600 | 68.421 | 114 | 33 | 2 | 17 | 129 | 161 | 272 | 2.62e-48 | 161 |
MS.gene79844.t1 | MTR_2g032030 | 42.358 | 229 | 87 | 6 | 21 | 211 | 238 | 459 | 8.31e-47 | 161 |
MS.gene79844.t1 | MTR_2g032030 | 48.864 | 176 | 64 | 4 | 21 | 177 | 238 | 406 | 6.78e-46 | 157 |
MS.gene79844.t1 | MTR_8g098945 | 66.304 | 92 | 26 | 1 | 41 | 132 | 130 | 216 | 8.75e-40 | 138 |
MS.gene79844.t1 | MTR_7g109600 | 52.586 | 116 | 41 | 3 | 20 | 124 | 24 | 136 | 2.24e-34 | 124 |
MS.gene79844.t1 | MTR_2g016770 | 58.763 | 97 | 33 | 2 | 14 | 104 | 4 | 99 | 6.82e-34 | 121 |
MS.gene79844.t1 | MTR_2g016770 | 61.111 | 90 | 28 | 2 | 21 | 104 | 3 | 91 | 1.80e-32 | 117 |
MS.gene79844.t1 | MTR_8g087000 | 53.608 | 97 | 32 | 2 | 21 | 105 | 46 | 141 | 7.30e-30 | 111 |
MS.gene79844.t1 | MTR_8g087000 | 68.182 | 66 | 21 | 0 | 40 | 105 | 77 | 142 | 2.23e-29 | 110 |
MS.gene79844.t1 | MTR_2g083870 | 56.818 | 88 | 32 | 1 | 19 | 100 | 53 | 140 | 9.30e-29 | 108 |
MS.gene79844.t1 | MTR_5g016610 | 60.241 | 83 | 28 | 1 | 20 | 97 | 174 | 256 | 9.58e-29 | 109 |
MS.gene79844.t1 | MTR_4g127040 | 61.446 | 83 | 27 | 1 | 20 | 97 | 220 | 302 | 5.28e-28 | 108 |
MS.gene79844.t1 | MTR_2g024380 | 49.020 | 102 | 49 | 2 | 19 | 119 | 230 | 329 | 3.36e-27 | 108 |
MS.gene79844.t1 | MTR_1g009613 | 58.537 | 82 | 29 | 1 | 21 | 97 | 238 | 319 | 3.71e-27 | 106 |
MS.gene79844.t1 | MTR_4g094908 | 59.756 | 82 | 28 | 2 | 21 | 97 | 242 | 323 | 4.25e-26 | 103 |
MS.gene79844.t1 | MTR_2g024350 | 51.136 | 88 | 40 | 2 | 33 | 119 | 1 | 86 | 8.04e-26 | 100 |
MS.gene79844.t1 | MTR_8g067635 | 49.451 | 91 | 45 | 1 | 21 | 110 | 330 | 420 | 2.24e-24 | 100 |
MS.gene79844.t1 | MTR_1g070455 | 68.421 | 57 | 18 | 0 | 41 | 97 | 294 | 350 | 1.62e-23 | 97.1 |
MS.gene79844.t1 | MTR_8g069935 | 43.548 | 124 | 56 | 5 | 18 | 131 | 305 | 424 | 5.02e-23 | 96.7 |
MS.gene79844.t1 | MTR_8g067650 | 47.368 | 95 | 47 | 2 | 19 | 110 | 316 | 410 | 8.27e-23 | 96.3 |
MS.gene79844.t1 | MTR_6g053200 | 48.235 | 85 | 42 | 1 | 19 | 101 | 307 | 391 | 2.42e-22 | 95.1 |
MS.gene79844.t1 | MTR_0117s0040 | 45.238 | 84 | 46 | 0 | 14 | 97 | 48 | 131 | 9.37e-22 | 90.1 |
MS.gene79844.t1 | MTR_3g108960 | 50.000 | 84 | 33 | 2 | 21 | 97 | 290 | 371 | 1.74e-21 | 91.7 |
MS.gene79844.t1 | MTR_7g011820 | 41.667 | 108 | 61 | 2 | 17 | 123 | 386 | 492 | 3.78e-21 | 91.7 |
MS.gene79844.t1 | MTR_7g011820 | 44.286 | 70 | 35 | 3 | 36 | 103 | 224 | 291 | 5.20e-11 | 62.0 |
MS.gene79844.t1 | MTR_1g086790 | 49.333 | 75 | 36 | 2 | 41 | 114 | 159 | 232 | 1.76e-20 | 88.2 |
MS.gene79844.t1 | MTR_4g094588 | 57.377 | 61 | 25 | 1 | 41 | 101 | 179 | 238 | 8.64e-20 | 86.3 |
MS.gene79844.t1 | MTR_7g110720 | 50.685 | 73 | 36 | 0 | 38 | 110 | 214 | 286 | 5.61e-19 | 85.1 |
MS.gene79844.t1 | MTR_7g110720 | 50.685 | 73 | 36 | 0 | 38 | 110 | 187 | 259 | 5.74e-19 | 84.7 |
MS.gene79844.t1 | MTR_5g091390 | 56.667 | 60 | 25 | 1 | 41 | 100 | 158 | 216 | 6.41e-19 | 83.6 |
MS.gene79844.t1 | MTR_4g094412 | 43.182 | 88 | 47 | 1 | 14 | 101 | 220 | 304 | 9.47e-19 | 84.3 |
MS.gene79844.t1 | MTR_4g094412 | 43.182 | 88 | 47 | 1 | 14 | 101 | 211 | 295 | 9.66e-19 | 84.3 |
MS.gene79844.t1 | MTR_7g109800 | 52.239 | 67 | 31 | 1 | 41 | 107 | 146 | 211 | 1.31e-18 | 82.8 |
MS.gene79844.t1 | MTR_4g132430 | 55.556 | 63 | 28 | 0 | 38 | 100 | 125 | 187 | 2.25e-18 | 82.8 |
MS.gene79844.t1 | MTR_4g132430 | 55.556 | 63 | 28 | 0 | 38 | 100 | 259 | 321 | 2.34e-18 | 83.2 |
MS.gene79844.t1 | MTR_5g042920 | 44.118 | 102 | 39 | 4 | 16 | 100 | 279 | 379 | 2.34e-18 | 83.2 |
MS.gene79844.t1 | MTR_5g042920 | 32.061 | 131 | 76 | 5 | 33 | 158 | 144 | 266 | 2.00e-11 | 63.2 |
MS.gene79844.t1 | MTR_3g104750 | 41.111 | 90 | 50 | 3 | 12 | 99 | 74 | 162 | 6.37e-18 | 78.2 |
MS.gene79844.t1 | MTR_4g082580 | 38.462 | 117 | 64 | 4 | 13 | 123 | 249 | 363 | 8.91e-18 | 81.3 |
MS.gene79844.t1 | MTR_4g082580 | 38.393 | 112 | 49 | 3 | 33 | 144 | 138 | 229 | 3.78e-15 | 73.9 |
MS.gene79844.t1 | MTR_2g023930 | 52.381 | 63 | 30 | 0 | 38 | 100 | 303 | 365 | 8.96e-18 | 81.6 |
MS.gene79844.t1 | MTR_3g053330 | 46.575 | 73 | 39 | 0 | 38 | 110 | 249 | 321 | 1.23e-17 | 81.3 |
MS.gene79844.t1 | MTR_3g090860 | 37.500 | 120 | 68 | 3 | 41 | 158 | 134 | 248 | 1.55e-17 | 80.1 |
MS.gene79844.t1 | MTR_7g100510 | 56.667 | 60 | 25 | 1 | 41 | 100 | 362 | 420 | 1.55e-17 | 80.9 |
MS.gene79844.t1 | MTR_7g100510 | 44.737 | 76 | 40 | 2 | 35 | 110 | 184 | 257 | 4.59e-14 | 70.9 |
MS.gene79844.t1 | MTR_4g007060 | 44.595 | 74 | 41 | 0 | 38 | 111 | 126 | 199 | 1.95e-17 | 79.3 |
MS.gene79844.t1 | MTR_4g007060 | 35.577 | 104 | 54 | 1 | 38 | 128 | 160 | 263 | 2.19e-17 | 79.7 |
MS.gene79844.t1 | MTR_7g062220 | 48.718 | 78 | 37 | 2 | 24 | 99 | 106 | 182 | 2.62e-17 | 79.3 |
MS.gene79844.t1 | MTR_2g033820 | 50.000 | 68 | 32 | 2 | 41 | 107 | 204 | 270 | 3.49e-17 | 79.7 |
MS.gene79844.t1 | MTR_5g043880 | 56.140 | 57 | 24 | 1 | 41 | 97 | 125 | 180 | 3.80e-17 | 78.2 |
MS.gene79844.t1 | MTR_3g056100 | 40.594 | 101 | 46 | 3 | 18 | 105 | 380 | 479 | 4.70e-17 | 79.7 |
MS.gene79844.t1 | MTR_3g056100 | 40.789 | 76 | 43 | 2 | 33 | 108 | 236 | 309 | 2.54e-11 | 62.8 |
MS.gene79844.t1 | MTR_3g056100 | 40.594 | 101 | 46 | 3 | 18 | 105 | 367 | 466 | 5.13e-17 | 79.7 |
MS.gene79844.t1 | MTR_3g056100 | 40.789 | 76 | 43 | 2 | 33 | 108 | 236 | 309 | 2.72e-11 | 62.8 |
MS.gene79844.t1 | MTR_3g056100 | 40.594 | 101 | 46 | 3 | 18 | 105 | 236 | 335 | 5.30e-17 | 79.3 |
MS.gene79844.t1 | MTR_3g056100 | 40.789 | 76 | 43 | 2 | 33 | 108 | 92 | 165 | 2.42e-11 | 62.8 |
MS.gene79844.t1 | MTR_2g105060 | 36.275 | 102 | 62 | 2 | 38 | 137 | 92 | 192 | 5.43e-17 | 77.4 |
MS.gene79844.t1 | MTR_4g049760 | 46.667 | 75 | 40 | 0 | 36 | 110 | 286 | 360 | 5.50e-17 | 79.3 |
MS.gene79844.t1 | MTR_3g056100 | 40.594 | 101 | 46 | 3 | 18 | 105 | 223 | 322 | 5.75e-17 | 79.3 |
MS.gene79844.t1 | MTR_3g056100 | 40.789 | 76 | 43 | 2 | 33 | 108 | 92 | 165 | 2.52e-11 | 62.8 |
MS.gene79844.t1 | MTR_2g045360 | 39.623 | 106 | 59 | 1 | 5 | 110 | 181 | 281 | 6.73e-17 | 79.0 |
MS.gene79844.t1 | MTR_7g009730 | 40.659 | 91 | 51 | 1 | 20 | 110 | 202 | 289 | 7.72e-17 | 79.0 |
MS.gene79844.t1 | MTR_2g105060 | 36.275 | 102 | 62 | 2 | 38 | 137 | 167 | 267 | 8.32e-17 | 77.8 |
MS.gene79844.t1 | MTR_7g117200 | 38.384 | 99 | 57 | 2 | 2 | 96 | 78 | 176 | 1.06e-16 | 77.8 |
MS.gene79844.t1 | MTR_5g094430 | 50.769 | 65 | 31 | 1 | 41 | 105 | 231 | 294 | 1.53e-16 | 77.8 |
MS.gene79844.t1 | MTR_5g094430 | 50.769 | 65 | 31 | 1 | 41 | 105 | 253 | 316 | 1.53e-16 | 77.8 |
MS.gene79844.t1 | MTR_5g094430 | 50.769 | 65 | 31 | 1 | 41 | 105 | 365 | 428 | 1.55e-16 | 78.2 |
MS.gene79844.t1 | MTR_2g088000 | 50.000 | 64 | 32 | 0 | 37 | 100 | 346 | 409 | 2.56e-16 | 77.4 |
MS.gene79844.t1 | MTR_8g099350 | 41.860 | 86 | 42 | 2 | 19 | 96 | 105 | 190 | 2.94e-16 | 76.6 |
MS.gene79844.t1 | MTR_4g049790 | 44.000 | 75 | 42 | 0 | 36 | 110 | 308 | 382 | 3.08e-16 | 77.4 |
MS.gene79844.t1 | MTR_1g015140 | 55.172 | 58 | 25 | 1 | 41 | 98 | 103 | 159 | 4.18e-16 | 73.2 |
MS.gene79844.t1 | MTR_7g080020 | 39.560 | 91 | 50 | 3 | 16 | 105 | 471 | 557 | 6.09e-16 | 76.6 |
MS.gene79844.t1 | MTR_7g080020 | 42.667 | 75 | 41 | 2 | 26 | 100 | 266 | 338 | 1.12e-12 | 67.0 |
MS.gene79844.t1 | MTR_4g122530 | 47.541 | 61 | 31 | 1 | 41 | 101 | 209 | 268 | 9.24e-16 | 75.5 |
MS.gene79844.t1 | MTR_7g071120 | 39.252 | 107 | 54 | 3 | 41 | 138 | 325 | 429 | 1.33e-15 | 75.5 |
MS.gene79844.t1 | MTR_7g071120 | 45.588 | 68 | 35 | 2 | 33 | 100 | 159 | 224 | 1.95e-12 | 66.2 |
MS.gene79844.t1 | MTR_4g107970 | 52.459 | 61 | 29 | 0 | 40 | 100 | 255 | 315 | 1.89e-15 | 75.1 |
MS.gene79844.t1 | MTR_4g107970 | 55.357 | 56 | 25 | 0 | 45 | 100 | 183 | 238 | 1.92e-15 | 75.1 |
MS.gene79844.t1 | MTR_4g130900 | 40.816 | 98 | 51 | 3 | 9 | 104 | 332 | 424 | 2.08e-15 | 74.7 |
MS.gene79844.t1 | MTR_3g009470 | 50.769 | 65 | 31 | 1 | 41 | 105 | 496 | 559 | 2.12e-15 | 75.1 |
MS.gene79844.t1 | MTR_3g009470 | 49.315 | 73 | 34 | 3 | 39 | 110 | 279 | 349 | 1.56e-12 | 66.6 |
MS.gene79844.t1 | MTR_7g109600 | 50.746 | 67 | 28 | 2 | 60 | 124 | 7 | 70 | 2.50e-15 | 72.0 |
MS.gene79844.t1 | MTR_7g080000 | 43.529 | 85 | 43 | 3 | 22 | 103 | 412 | 494 | 2.77e-15 | 74.7 |
MS.gene79844.t1 | MTR_7g080000 | 42.105 | 76 | 42 | 2 | 26 | 101 | 220 | 293 | 3.64e-13 | 68.6 |
MS.gene79844.t1 | MTR_3g031220 | 47.436 | 78 | 39 | 2 | 41 | 118 | 366 | 441 | 4.25e-15 | 73.9 |
MS.gene79844.t1 | MTR_6g086555 | 50.000 | 70 | 32 | 3 | 32 | 100 | 199 | 266 | 4.76e-15 | 73.6 |
MS.gene79844.t1 | MTR_5g097490 | 47.826 | 69 | 35 | 1 | 38 | 106 | 250 | 317 | 5.95e-15 | 73.2 |
MS.gene79844.t1 | MTR_1g013760 | 45.614 | 57 | 31 | 0 | 41 | 97 | 141 | 197 | 8.27e-15 | 72.0 |
MS.gene79844.t1 | MTR_4g013260 | 50.794 | 63 | 30 | 1 | 41 | 103 | 337 | 398 | 9.92e-15 | 72.8 |
MS.gene79844.t1 | MTR_4g013260 | 45.000 | 60 | 32 | 1 | 41 | 100 | 185 | 243 | 1.08e-11 | 63.9 |
MS.gene79844.t1 | MTR_8g027860 | 33.136 | 169 | 97 | 5 | 20 | 172 | 110 | 278 | 9.99e-15 | 72.4 |
MS.gene79844.t1 | MTR_3g095040 | 45.312 | 64 | 34 | 1 | 37 | 100 | 115 | 177 | 1.56e-14 | 70.1 |
MS.gene79844.t1 | MTR_7g028415 | 45.902 | 61 | 32 | 1 | 38 | 98 | 91 | 150 | 1.65e-14 | 69.3 |
MS.gene79844.t1 | MTR_7g028710 | 45.902 | 61 | 32 | 1 | 38 | 98 | 91 | 150 | 1.65e-14 | 69.3 |
MS.gene79844.t1 | MTR_7g079010 | 46.154 | 65 | 34 | 1 | 35 | 99 | 136 | 199 | 1.73e-14 | 70.1 |
MS.gene79844.t1 | MTR_8g092010 | 47.619 | 63 | 32 | 1 | 38 | 100 | 106 | 167 | 1.76e-14 | 69.3 |
MS.gene79844.t1 | MTR_1g078260 | 44.330 | 97 | 43 | 6 | 27 | 113 | 233 | 328 | 2.12e-14 | 72.0 |
MS.gene79844.t1 | MTR_1g013790 | 48.333 | 60 | 31 | 0 | 41 | 100 | 102 | 161 | 2.66e-14 | 70.1 |
MS.gene79844.t1 | MTR_3g106060 | 45.614 | 57 | 31 | 0 | 41 | 97 | 139 | 195 | 3.10e-14 | 70.5 |
MS.gene79844.t1 | MTR_8g087000 | 31.200 | 125 | 74 | 3 | 60 | 178 | 35 | 153 | 5.93e-14 | 67.8 |
MS.gene79844.t1 | MTR_8g092140 | 50.877 | 57 | 27 | 1 | 41 | 97 | 161 | 216 | 6.48e-14 | 68.9 |
MS.gene79844.t1 | MTR_3g095080 | 50.877 | 57 | 27 | 1 | 41 | 97 | 169 | 224 | 7.16e-14 | 68.9 |
MS.gene79844.t1 | MTR_3g095080 | 50.877 | 57 | 27 | 1 | 41 | 97 | 145 | 200 | 7.57e-14 | 68.6 |
MS.gene79844.t1 | MTR_7g073430 | 44.872 | 78 | 39 | 2 | 21 | 96 | 105 | 180 | 8.59e-14 | 69.3 |
MS.gene79844.t1 | MTR_5g074400 | 49.231 | 65 | 32 | 1 | 41 | 105 | 421 | 484 | 1.13e-13 | 69.7 |
MS.gene79844.t1 | MTR_1g077780 | 48.438 | 64 | 32 | 1 | 38 | 101 | 60 | 122 | 1.24e-13 | 66.2 |
MS.gene79844.t1 | MTR_8g007270 | 42.308 | 78 | 42 | 3 | 22 | 97 | 134 | 210 | 1.55e-13 | 67.8 |
MS.gene79844.t1 | MTR_3g093830 | 39.286 | 84 | 46 | 2 | 21 | 102 | 111 | 191 | 5.39e-13 | 67.0 |
MS.gene79844.t1 | MTR_3g009470 | 49.315 | 73 | 34 | 3 | 39 | 110 | 279 | 349 | 1.32e-12 | 66.6 |
MS.gene79844.t1 | MTR_8g096730 | 35.526 | 76 | 47 | 2 | 25 | 99 | 54 | 128 | 1.69e-12 | 63.2 |
MS.gene79844.t1 | MTR_5g067680 | 40.217 | 92 | 42 | 2 | 17 | 95 | 168 | 259 | 2.91e-12 | 65.5 |
MS.gene79844.t1 | MTR_8g005750 | 42.308 | 78 | 41 | 2 | 21 | 96 | 86 | 161 | 3.31e-12 | 64.7 |
MS.gene79844.t1 | MTR_4g047580 | 40.000 | 75 | 45 | 0 | 36 | 110 | 277 | 351 | 3.35e-12 | 65.5 |
MS.gene79844.t1 | MTR_5g067700 | 35.922 | 103 | 47 | 3 | 7 | 96 | 68 | 164 | 5.15e-12 | 63.5 |
MS.gene79844.t1 | MTR_7g073380 | 39.744 | 78 | 43 | 2 | 21 | 96 | 106 | 181 | 7.16e-12 | 63.9 |
MS.gene79844.t1 | MTR_2g075680 | 42.466 | 73 | 40 | 1 | 32 | 102 | 140 | 212 | 6.92e-11 | 61.2 |
MS.gene79844.t1 | MTR_2g075750 | 47.541 | 61 | 30 | 1 | 38 | 96 | 26 | 86 | 7.85e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79844.t1 | AT4G01250 | 60.847 | 189 | 59 | 3 | 17 | 202 | 105 | 281 | 3.79e-73 | 224 |
MS.gene79844.t1 | AT5G52830 | 57.516 | 153 | 50 | 4 | 19 | 168 | 143 | 283 | 1.76e-51 | 170 |
MS.gene79844.t1 | AT1G30650 | 44.076 | 211 | 94 | 5 | 21 | 209 | 188 | 396 | 1.18e-43 | 152 |
MS.gene79844.t1 | AT2G34830 | 44.762 | 210 | 83 | 5 | 17 | 193 | 179 | 388 | 5.35e-43 | 150 |
MS.gene79844.t1 | AT2G34830 | 44.762 | 210 | 83 | 5 | 17 | 193 | 188 | 397 | 7.60e-43 | 150 |
MS.gene79844.t1 | AT4G23550 | 63.478 | 115 | 37 | 2 | 26 | 139 | 125 | 235 | 5.80e-42 | 144 |
MS.gene79844.t1 | AT5G45050 | 58.559 | 111 | 43 | 1 | 19 | 126 | 1128 | 1238 | 6.97e-36 | 134 |
MS.gene79844.t1 | AT5G45050 | 58.559 | 111 | 43 | 1 | 19 | 126 | 1156 | 1266 | 7.27e-36 | 134 |
MS.gene79844.t1 | AT5G45050 | 58.559 | 111 | 43 | 1 | 19 | 126 | 1017 | 1127 | 8.19e-36 | 134 |
MS.gene79844.t1 | AT1G29280 | 51.282 | 117 | 40 | 3 | 7 | 112 | 31 | 141 | 4.53e-34 | 122 |
MS.gene79844.t1 | AT3G58710 | 51.304 | 115 | 38 | 3 | 17 | 113 | 38 | 152 | 1.81e-31 | 116 |
MS.gene79844.t1 | AT3G58710 | 50.435 | 115 | 38 | 2 | 18 | 113 | 37 | 151 | 1.10e-30 | 114 |
MS.gene79844.t1 | AT2G23320 | 59.036 | 83 | 29 | 2 | 20 | 97 | 215 | 297 | 3.60e-27 | 106 |
MS.gene79844.t1 | AT2G30590 | 72.414 | 58 | 16 | 0 | 41 | 98 | 314 | 371 | 1.97e-25 | 102 |
MS.gene79844.t1 | AT4G31550 | 56.098 | 82 | 31 | 1 | 21 | 97 | 221 | 302 | 2.15e-25 | 101 |
MS.gene79844.t1 | AT4G24240 | 57.831 | 83 | 30 | 1 | 20 | 97 | 256 | 338 | 2.75e-25 | 101 |
MS.gene79844.t1 | AT4G31550 | 56.098 | 82 | 31 | 1 | 21 | 97 | 222 | 303 | 6.58e-25 | 100 |
MS.gene79844.t1 | AT5G28650 | 56.627 | 83 | 31 | 1 | 20 | 97 | 237 | 319 | 2.04e-24 | 99.0 |
MS.gene79844.t1 | AT3G04670 | 56.627 | 83 | 31 | 1 | 20 | 97 | 237 | 319 | 2.22e-24 | 99.0 |
MS.gene79844.t1 | AT5G45260 | 53.488 | 86 | 37 | 2 | 28 | 111 | 1197 | 1281 | 7.48e-24 | 99.8 |
MS.gene79844.t1 | AT2G24570 | 54.878 | 82 | 32 | 1 | 21 | 97 | 219 | 300 | 2.25e-23 | 95.9 |
MS.gene79844.t1 | AT5G46350 | 51.389 | 72 | 32 | 2 | 41 | 110 | 184 | 254 | 1.14e-19 | 85.9 |
MS.gene79844.t1 | AT1G29860 | 57.377 | 61 | 25 | 1 | 41 | 101 | 137 | 196 | 1.51e-19 | 85.1 |
MS.gene79844.t1 | AT4G18170 | 56.452 | 62 | 26 | 1 | 41 | 102 | 173 | 233 | 2.00e-19 | 85.1 |
MS.gene79844.t1 | AT2G04880 | 52.703 | 74 | 29 | 2 | 38 | 106 | 281 | 353 | 3.27e-19 | 85.9 |
MS.gene79844.t1 | AT2G04880 | 45.333 | 75 | 34 | 3 | 36 | 110 | 107 | 174 | 4.49e-12 | 65.1 |
MS.gene79844.t1 | AT2G04880 | 52.703 | 74 | 29 | 2 | 38 | 106 | 305 | 377 | 3.28e-19 | 85.9 |
MS.gene79844.t1 | AT2G04880 | 45.333 | 75 | 34 | 3 | 36 | 110 | 107 | 174 | 4.07e-12 | 65.1 |
MS.gene79844.t1 | AT3G62340 | 51.807 | 83 | 34 | 3 | 23 | 100 | 96 | 177 | 4.31e-19 | 83.6 |
MS.gene79844.t1 | AT5G49520 | 56.667 | 60 | 25 | 1 | 41 | 100 | 222 | 280 | 6.26e-19 | 84.7 |
MS.gene79844.t1 | AT4G04450 | 43.158 | 95 | 51 | 1 | 38 | 129 | 196 | 290 | 7.98e-19 | 84.7 |
MS.gene79844.t1 | AT4G04450 | 43.158 | 95 | 51 | 1 | 38 | 129 | 290 | 384 | 9.81e-19 | 84.7 |
MS.gene79844.t1 | AT1G62300 | 55.556 | 63 | 28 | 0 | 38 | 100 | 310 | 372 | 1.28e-18 | 84.3 |
MS.gene79844.t1 | AT1G68150 | 47.368 | 76 | 40 | 0 | 40 | 115 | 235 | 310 | 1.48e-18 | 83.6 |
MS.gene79844.t1 | AT4G22070 | 55.556 | 63 | 28 | 0 | 38 | 100 | 295 | 357 | 2.03e-18 | 83.6 |
MS.gene79844.t1 | AT4G22070 | 55.556 | 63 | 28 | 0 | 38 | 100 | 295 | 357 | 2.03e-18 | 83.6 |
MS.gene79844.t1 | AT4G22070 | 55.556 | 63 | 28 | 0 | 38 | 100 | 295 | 357 | 2.03e-18 | 83.6 |
MS.gene79844.t1 | AT4G22070 | 55.556 | 63 | 28 | 0 | 38 | 100 | 295 | 357 | 2.03e-18 | 83.6 |
MS.gene79844.t1 | AT5G15130 | 43.333 | 90 | 48 | 1 | 21 | 110 | 211 | 297 | 9.80e-18 | 81.6 |
MS.gene79844.t1 | AT5G15130 | 43.333 | 90 | 48 | 1 | 21 | 110 | 169 | 255 | 1.01e-17 | 81.6 |
MS.gene79844.t1 | AT1G69310 | 56.140 | 57 | 24 | 1 | 41 | 97 | 148 | 203 | 1.92e-17 | 79.3 |
MS.gene79844.t1 | AT1G69310 | 56.140 | 57 | 24 | 1 | 41 | 97 | 148 | 203 | 1.92e-17 | 79.3 |
MS.gene79844.t1 | AT1G69310 | 56.140 | 57 | 24 | 1 | 41 | 97 | 148 | 203 | 1.92e-17 | 79.3 |
MS.gene79844.t1 | AT2G25000 | 50.000 | 60 | 30 | 0 | 41 | 100 | 104 | 163 | 2.09e-17 | 78.2 |
MS.gene79844.t1 | AT2G25000 | 50.000 | 60 | 30 | 0 | 41 | 100 | 104 | 163 | 2.09e-17 | 78.2 |
MS.gene79844.t1 | AT1G13960 | 52.381 | 63 | 29 | 1 | 38 | 100 | 254 | 315 | 2.93e-17 | 79.7 |
MS.gene79844.t1 | AT1G13960 | 40.789 | 76 | 43 | 2 | 25 | 100 | 61 | 134 | 3.95e-13 | 67.8 |
MS.gene79844.t1 | AT2G25000 | 50.000 | 60 | 30 | 0 | 41 | 100 | 126 | 185 | 4.16e-17 | 77.8 |
MS.gene79844.t1 | AT2G21900 | 49.180 | 61 | 30 | 1 | 41 | 101 | 110 | 169 | 5.02e-17 | 76.6 |
MS.gene79844.t1 | AT2G03340 | 50.000 | 68 | 33 | 1 | 38 | 105 | 413 | 479 | 5.90e-17 | 79.3 |
MS.gene79844.t1 | AT2G03340 | 32.593 | 135 | 79 | 3 | 35 | 159 | 245 | 377 | 5.22e-13 | 67.8 |
MS.gene79844.t1 | AT2G25000 | 50.000 | 60 | 30 | 0 | 41 | 100 | 147 | 206 | 6.10e-17 | 77.8 |
MS.gene79844.t1 | AT1G13960 | 52.381 | 63 | 29 | 1 | 38 | 100 | 407 | 468 | 6.95e-17 | 79.3 |
MS.gene79844.t1 | AT1G13960 | 40.789 | 76 | 43 | 2 | 25 | 100 | 214 | 287 | 3.51e-13 | 68.6 |
MS.gene79844.t1 | AT5G07100 | 53.968 | 63 | 28 | 1 | 41 | 103 | 142 | 203 | 7.64e-17 | 76.6 |
MS.gene79844.t1 | AT5G07100 | 42.647 | 68 | 38 | 1 | 33 | 100 | 17 | 83 | 2.55e-12 | 64.3 |
MS.gene79844.t1 | AT5G07100 | 53.968 | 63 | 28 | 1 | 41 | 103 | 142 | 203 | 7.64e-17 | 76.6 |
MS.gene79844.t1 | AT5G07100 | 42.647 | 68 | 38 | 1 | 33 | 100 | 17 | 83 | 2.55e-12 | 64.3 |
MS.gene79844.t1 | AT5G07100 | 53.968 | 63 | 28 | 1 | 41 | 103 | 142 | 203 | 7.64e-17 | 76.6 |
MS.gene79844.t1 | AT5G07100 | 42.647 | 68 | 38 | 1 | 33 | 100 | 17 | 83 | 2.55e-12 | 64.3 |
MS.gene79844.t1 | AT5G07100 | 53.968 | 63 | 28 | 1 | 41 | 103 | 142 | 203 | 7.64e-17 | 76.6 |
MS.gene79844.t1 | AT5G07100 | 42.647 | 68 | 38 | 1 | 33 | 100 | 17 | 83 | 2.55e-12 | 64.3 |
MS.gene79844.t1 | AT5G26170 | 54.386 | 57 | 25 | 1 | 41 | 97 | 114 | 169 | 1.04e-16 | 75.1 |
MS.gene79844.t1 | AT2G38470 | 40.385 | 104 | 51 | 3 | 41 | 134 | 363 | 465 | 1.53e-16 | 78.2 |
MS.gene79844.t1 | AT4G39410 | 41.414 | 99 | 53 | 3 | 22 | 116 | 203 | 300 | 1.59e-16 | 77.0 |
MS.gene79844.t1 | AT4G01720 | 52.459 | 61 | 29 | 0 | 40 | 100 | 239 | 299 | 1.61e-16 | 78.2 |
MS.gene79844.t1 | AT1G80590 | 30.178 | 169 | 107 | 3 | 2 | 159 | 38 | 206 | 1.73e-16 | 75.9 |
MS.gene79844.t1 | AT2G47260 | 51.667 | 60 | 28 | 1 | 41 | 100 | 175 | 233 | 1.76e-16 | 77.4 |
MS.gene79844.t1 | AT1G80840 | 42.254 | 71 | 41 | 0 | 41 | 111 | 147 | 217 | 1.78e-16 | 77.0 |
MS.gene79844.t1 | AT1G69810 | 48.611 | 72 | 36 | 1 | 40 | 110 | 203 | 274 | 1.85e-16 | 77.4 |
MS.gene79844.t1 | AT1G18860 | 45.000 | 80 | 41 | 1 | 21 | 100 | 223 | 299 | 1.88e-16 | 77.8 |
MS.gene79844.t1 | AT5G07100 | 53.968 | 63 | 28 | 1 | 41 | 103 | 235 | 296 | 1.92e-16 | 77.0 |
MS.gene79844.t1 | AT5G07100 | 42.647 | 68 | 38 | 1 | 33 | 100 | 110 | 176 | 5.12e-12 | 64.3 |
MS.gene79844.t1 | AT2G37260 | 50.000 | 86 | 33 | 4 | 19 | 97 | 323 | 405 | 2.20e-16 | 77.4 |
MS.gene79844.t1 | AT2G37260 | 41.414 | 99 | 49 | 4 | 35 | 128 | 160 | 254 | 1.51e-11 | 63.5 |
MS.gene79844.t1 | AT2G37260 | 50.000 | 86 | 33 | 4 | 19 | 97 | 243 | 325 | 2.40e-16 | 77.0 |
MS.gene79844.t1 | AT2G37260 | 41.414 | 99 | 49 | 4 | 35 | 128 | 80 | 174 | 2.12e-11 | 62.8 |
MS.gene79844.t1 | AT2G37260 | 50.000 | 86 | 33 | 4 | 19 | 97 | 241 | 323 | 2.59e-16 | 77.0 |
MS.gene79844.t1 | AT2G37260 | 41.414 | 99 | 49 | 4 | 35 | 128 | 78 | 172 | 2.33e-11 | 62.8 |
MS.gene79844.t1 | AT1G69810 | 48.611 | 72 | 36 | 1 | 40 | 110 | 145 | 216 | 3.14e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 177 | 269 | 4.00e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 177 | 269 | 4.00e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 177 | 269 | 4.00e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 177 | 269 | 4.00e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 353 | 445 | 4.44e-16 | 77.0 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 313 | 405 | 4.86e-16 | 76.6 |
MS.gene79844.t1 | AT4G26640 | 41.489 | 94 | 54 | 1 | 12 | 105 | 281 | 373 | 4.92e-16 | 76.6 |
MS.gene79844.t1 | AT4G11070 | 44.706 | 85 | 39 | 2 | 20 | 96 | 83 | 167 | 8.36e-16 | 74.7 |
MS.gene79844.t1 | AT4G31800 | 46.667 | 60 | 32 | 0 | 41 | 100 | 112 | 171 | 1.00e-15 | 73.9 |
MS.gene79844.t1 | AT4G11070 | 44.706 | 85 | 39 | 2 | 20 | 96 | 115 | 199 | 1.08e-15 | 74.7 |
MS.gene79844.t1 | AT4G31800 | 46.667 | 60 | 32 | 0 | 41 | 100 | 177 | 236 | 1.27e-15 | 74.7 |
MS.gene79844.t1 | AT4G26440 | 47.619 | 84 | 38 | 3 | 41 | 119 | 373 | 455 | 1.44e-15 | 75.5 |
MS.gene79844.t1 | AT4G26440 | 46.479 | 71 | 34 | 3 | 41 | 109 | 179 | 247 | 1.02e-12 | 67.0 |
MS.gene79844.t1 | AT4G30935 | 35.036 | 137 | 71 | 4 | 38 | 157 | 329 | 464 | 1.91e-15 | 75.1 |
MS.gene79844.t1 | AT3G01080 | 43.158 | 95 | 41 | 4 | 18 | 100 | 310 | 403 | 2.04e-15 | 74.7 |
MS.gene79844.t1 | AT3G01080 | 45.205 | 73 | 38 | 2 | 36 | 108 | 201 | 271 | 3.89e-13 | 68.2 |
MS.gene79844.t1 | AT3G01080 | 43.158 | 95 | 41 | 4 | 18 | 100 | 272 | 365 | 2.50e-15 | 74.3 |
MS.gene79844.t1 | AT3G01080 | 45.205 | 73 | 38 | 2 | 36 | 108 | 163 | 233 | 3.82e-13 | 68.2 |
MS.gene79844.t1 | AT2G40740 | 43.617 | 94 | 44 | 3 | 12 | 96 | 138 | 231 | 4.27e-15 | 72.8 |
MS.gene79844.t1 | AT2G40740 | 43.617 | 94 | 44 | 3 | 12 | 96 | 147 | 240 | 5.60e-15 | 72.8 |
MS.gene79844.t1 | AT2G46400 | 55.556 | 54 | 22 | 1 | 45 | 96 | 109 | 162 | 8.71e-15 | 72.0 |
MS.gene79844.t1 | AT4G23810 | 42.105 | 95 | 46 | 3 | 10 | 96 | 123 | 216 | 8.76e-15 | 72.4 |
MS.gene79844.t1 | AT2G40750 | 28.662 | 157 | 102 | 3 | 22 | 176 | 137 | 285 | 8.77e-15 | 72.4 |
MS.gene79844.t1 | AT5G56270 | 50.794 | 63 | 30 | 1 | 41 | 103 | 488 | 549 | 9.41e-15 | 73.2 |
MS.gene79844.t1 | AT5G56270 | 44.118 | 68 | 34 | 3 | 41 | 106 | 274 | 339 | 4.69e-11 | 62.4 |
MS.gene79844.t1 | AT1G64000 | 43.056 | 72 | 40 | 1 | 41 | 112 | 115 | 185 | 9.64e-15 | 70.5 |
MS.gene79844.t1 | AT5G13080 | 50.000 | 58 | 28 | 1 | 41 | 98 | 68 | 124 | 1.75e-14 | 68.6 |
MS.gene79844.t1 | AT5G43290 | 36.937 | 111 | 67 | 2 | 38 | 148 | 112 | 219 | 4.64e-14 | 69.7 |
MS.gene79844.t1 | AT3G56400 | 41.026 | 78 | 41 | 3 | 21 | 96 | 104 | 178 | 4.92e-14 | 70.1 |
MS.gene79844.t1 | AT3G01970 | 45.000 | 60 | 32 | 1 | 38 | 97 | 63 | 121 | 5.56e-14 | 67.4 |
MS.gene79844.t1 | AT5G41570 | 43.056 | 72 | 40 | 1 | 41 | 112 | 99 | 169 | 8.26e-14 | 67.4 |
MS.gene79844.t1 | AT2G44745 | 42.308 | 78 | 42 | 3 | 22 | 97 | 125 | 201 | 8.35e-14 | 68.2 |
MS.gene79844.t1 | AT1G55600 | 44.262 | 61 | 33 | 1 | 40 | 100 | 307 | 366 | 1.75e-13 | 69.3 |
MS.gene79844.t1 | AT2G46130 | 49.153 | 59 | 29 | 1 | 41 | 99 | 31 | 88 | 2.52e-13 | 64.3 |
MS.gene79844.t1 | AT2G30250 | 49.180 | 61 | 30 | 1 | 41 | 101 | 329 | 388 | 3.09e-13 | 68.2 |
MS.gene79844.t1 | AT3G01080 | 45.205 | 73 | 38 | 2 | 36 | 108 | 201 | 271 | 3.95e-13 | 67.8 |
MS.gene79844.t1 | AT1G66600 | 26.804 | 194 | 105 | 6 | 6 | 187 | 59 | 227 | 9.17e-13 | 65.9 |
MS.gene79844.t1 | AT1G66560 | 35.652 | 115 | 66 | 3 | 3 | 109 | 60 | 174 | 1.30e-12 | 65.5 |
MS.gene79844.t1 | AT1G69310 | 50.877 | 57 | 23 | 2 | 41 | 97 | 148 | 199 | 1.51e-12 | 65.9 |
MS.gene79844.t1 | AT5G24110 | 50.000 | 58 | 27 | 1 | 41 | 96 | 114 | 171 | 1.80e-12 | 65.5 |
MS.gene79844.t1 | AT1G66550 | 31.061 | 132 | 73 | 3 | 10 | 123 | 69 | 200 | 1.85e-12 | 65.1 |
MS.gene79844.t1 | AT5G01900 | 47.368 | 57 | 28 | 1 | 41 | 95 | 111 | 167 | 2.07e-11 | 62.4 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.35e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.46e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.50e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.50e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.60e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.63e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.64e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.64e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 386 | 529 | 2.67e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.83e-11 | 63.2 |
MS.gene79844.t1 | AT4G12020 | 31.788 | 151 | 93 | 6 | 25 | 172 | 453 | 596 | 2.90e-11 | 63.2 |
MS.gene79844.t1 | AT1G66550 | 36.559 | 93 | 50 | 2 | 40 | 123 | 103 | 195 | 4.03e-11 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAAAAGCTAACCTTGGATA+TGG | 0.255122 | 8.2:-68277736 | None:intergenic |
TGAATTTGAGTTATCTGATA+TGG | 0.292666 | 8.2:+68278512 | MS.gene79844:CDS |
GTCAGAGAGCAAAGATGATT+TGG | 0.299852 | 8.2:+68278458 | MS.gene79844:CDS |
TCATCTGGTGGTGACTGTTT+TGG | 0.371167 | 8.2:+68278600 | MS.gene79844:CDS |
ACTCACAGAAATTCTCTTGC+TGG | 0.377900 | 8.2:+68278300 | MS.gene79844:CDS |
ATATGGGCATGGAGGAAATA+TGG | 0.384293 | 8.2:+68277691 | MS.gene79844:CDS |
GGATATGGTGACCCTTTGAT+TGG | 0.396288 | 8.2:-68277721 | None:intergenic |
AGAAGCTCTCATCAGACATA+TGG | 0.410207 | 8.2:+68277674 | MS.gene79844:CDS |
GTAACAGATGATTTCTTTGA+AGG | 0.418155 | 8.2:+68278537 | MS.gene79844:CDS |
AGAGCAATACTAGCAGCAAA+AGG | 0.441287 | 8.2:-68278627 | None:intergenic |
TCTTCAGCAGTGACAGTTTG+TGG | 0.449517 | 8.2:-68278348 | None:intergenic |
GAATTTCTGTGAGTAGGAGC+AGG | 0.480005 | 8.2:-68278291 | None:intergenic |
TACAGATGTAGCAGTTCAAA+AGG | 0.483623 | 8.2:+68278186 | MS.gene79844:CDS |
AGAGAGCAAAGATGATTTGG+AGG | 0.486921 | 8.2:+68278461 | MS.gene79844:CDS |
GAAGGTTTAGATGAATTGAC+AGG | 0.487690 | 8.2:+68278555 | MS.gene79844:CDS |
TAGGAAGATTCAGCATAAGA+AGG | 0.490182 | 8.2:+68277633 | MS.gene79844:intron |
GTTCAAAAGGATGTTTAGCT+AGG | 0.490492 | 8.2:+68278199 | MS.gene79844:CDS |
ATCAGAGGCTGAAGAGGAAG+AGG | 0.515216 | 8.2:+68278413 | MS.gene79844:CDS |
TATGTAACTATGAACATTGA+TGG | 0.516786 | 8.2:-68278249 | None:intergenic |
AGTATTGCTCTTCCTGCTTG+TGG | 0.519938 | 8.2:+68278639 | MS.gene79844:CDS |
TTCCTCTTCAGCCTCTGATG+TGG | 0.535972 | 8.2:-68278409 | None:intergenic |
GAAGCTCTCATCAGACATAT+GGG | 0.541248 | 8.2:+68277675 | MS.gene79844:CDS |
ATCCACATCAGAGGCTGAAG+AGG | 0.569315 | 8.2:+68278407 | MS.gene79844:CDS |
GAGCAATACTAGCAGCAAAA+GGG | 0.577414 | 8.2:-68278626 | None:intergenic |
ATTGCTCTTCCTGCTTGTGG+TGG | 0.580832 | 8.2:+68278642 | MS.gene79844:CDS |
TCACACCAAGATCCAAAAGA+AGG | 0.586020 | 8.2:+68277373 | MS.gene79844:CDS |
CATCATTGGCCACCACAAGC+AGG | 0.589284 | 8.2:-68278651 | None:intergenic |
GGAAATGATGAATGATGATG+AGG | 0.594118 | 8.2:+68278482 | MS.gene79844:CDS |
GCAAGAGAATTTCTGTGAGT+AGG | 0.601696 | 8.2:-68278297 | None:intergenic |
TAGCTAGGAAACAAGTTGAG+AGG | 0.603499 | 8.2:+68278214 | MS.gene79844:CDS |
TCAAAGGGTCACCATATCCA+AGG | 0.606385 | 8.2:+68277725 | MS.gene79844:CDS |
ATGTAACTATGAACATTGAT+GGG | 0.626118 | 8.2:-68278248 | None:intergenic |
ATGTTCATAGTTACATACAC+TGG | 0.626605 | 8.2:+68278255 | MS.gene79844:CDS |
AGTTTCATCATCCACATCAG+AGG | 0.630120 | 8.2:+68278398 | MS.gene79844:CDS |
GTGACAGTTTGTGGTGACAA+TGG | 0.637730 | 8.2:-68278339 | None:intergenic |
AATTTCTGTGAGTAGGAGCA+GGG | 0.638458 | 8.2:-68278290 | None:intergenic |
AATGATGAATGATGATGAGG+AGG | 0.660009 | 8.2:+68278485 | MS.gene79844:CDS |
TCTCATCAGACATATGGGCA+TGG | 0.674402 | 8.2:+68277680 | MS.gene79844:CDS |
CATCAGACATATGGGCATGG+AGG | 0.678030 | 8.2:+68277683 | MS.gene79844:CDS |
AAAACAGTAGCATCATCTGG+TGG | 0.715149 | 8.2:+68278588 | MS.gene79844:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAATAAAAATCATATATTT+TGG | + | chr8.2:68277469-68277488 | MS.gene79844:intron | 10.0% |
!!! | TTAATTAAGTTGTTTATTTA+AGG | + | chr8.2:68278125-68278144 | MS.gene79844:intron | 10.0% |
!! | TCAAATAAGTCAATATAAAT+AGG | - | chr8.2:68277886-68277905 | None:intergenic | 15.0% |
!! | TTATGAAAACAAGATAAAAA+TGG | - | chr8.2:68278005-68278024 | None:intergenic | 15.0% |
!!! | AAAGTGTTTTTTCTTTAAAT+AGG | - | chr8.2:68277838-68277857 | None:intergenic | 15.0% |
!!! | AATTTTCATAATCCTAAATA+TGG | - | chr8.2:68277514-68277533 | None:intergenic | 15.0% |
!!! | TAAAAGTTATTTCTATAAGT+TGG | - | chr8.2:68278098-68278117 | None:intergenic | 15.0% |
!! | ACAAGATAAAAATGGTTTAT+TGG | - | chr8.2:68277997-68278016 | None:intergenic | 20.0% |
!! | CATTTATTATTCATGATTTG+AGG | + | chr8.2:68277583-68277602 | MS.gene79844:intron | 20.0% |
!! | TTATTATAAGAAGTTGAAGA+AGG | - | chr8.2:68277102-68277121 | None:intergenic | 20.0% |
!!! | AAATTTTTAAAAGCTAACCT+TGG | - | chr8.2:68277745-68277764 | None:intergenic | 20.0% |
!!! | AACATTTTTTTACCTTCTTT+TGG | - | chr8.2:68277388-68277407 | None:intergenic | 20.0% |
!!! | ATCTATCAAAAAAAGTGTTT+AGG | - | chr8.2:68277922-68277941 | None:intergenic | 20.0% |
!!! | GACTTAAATTTTCCATATTT+AGG | + | chr8.2:68277499-68277518 | MS.gene79844:intron | 20.0% |
! | ATGTAACTATGAACATTGAT+GGG | - | chr8.2:68278251-68278270 | None:intergenic | 25.0% |
! | TATGTAACTATGAACATTGA+TGG | - | chr8.2:68278252-68278271 | None:intergenic | 25.0% |
!! | TGAATTTGAGTTATCTGATA+TGG | + | chr8.2:68278512-68278531 | MS.gene79844:CDS | 25.0% |
!!! | GATGAAACTTGTTTTGTAAA+GGG | - | chr8.2:68278387-68278406 | None:intergenic | 25.0% |
!!! | TGATGAAACTTGTTTTGTAA+AGG | - | chr8.2:68278388-68278407 | None:intergenic | 25.0% |
!!! | TGCATGTTTTTGCTAATTAT+AGG | + | chr8.2:68277614-68277633 | MS.gene79844:intron | 25.0% |
AAGTTCATGCAATTCTTCAA+TGG | - | chr8.2:68277202-68277221 | None:intergenic | 30.0% | |
ATGGTCAAAAACCAATCAAA+GGG | + | chr8.2:68277710-68277729 | MS.gene79844:CDS | 30.0% | |
ATGTTCATAGTTACATACAC+TGG | + | chr8.2:68278255-68278274 | MS.gene79844:CDS | 30.0% | |
GATGATGATTTGAAGAAGAA+AGG | - | chr8.2:68277231-68277250 | None:intergenic | 30.0% | |
GTAACAGATGATTTCTTTGA+AGG | + | chr8.2:68278537-68278556 | MS.gene79844:CDS | 30.0% | |
TATGGTCAAAAACCAATCAA+AGG | + | chr8.2:68277709-68277728 | MS.gene79844:CDS | 30.0% | |
TTAAAAGCTAACCTTGGATA+TGG | - | chr8.2:68277739-68277758 | None:intergenic | 30.0% | |
! | TTATTAACCAGAAGCTGTTT+TGG | - | chr8.2:68277327-68277346 | None:intergenic | 30.0% |
! | TTTTACCTTCTTTTGGATCT+TGG | - | chr8.2:68277381-68277400 | None:intergenic | 30.0% |
!! | TTGTTTTGTAAAGGGTTGTT+GGG | - | chr8.2:68278379-68278398 | None:intergenic | 30.0% |
GAAGGTTTAGATGAATTGAC+AGG | + | chr8.2:68278555-68278574 | MS.gene79844:CDS | 35.0% | |
GTTCAAAAGGATGTTTAGCT+AGG | + | chr8.2:68278199-68278218 | MS.gene79844:CDS | 35.0% | |
TACAGATGTAGCAGTTCAAA+AGG | + | chr8.2:68278186-68278205 | MS.gene79844:CDS | 35.0% | |
TAGGAAGATTCAGCATAAGA+AGG | + | chr8.2:68277633-68277652 | MS.gene79844:intron | 35.0% | |
TATACAACCAAAACAGCTTC+TGG | + | chr8.2:68277317-68277336 | MS.gene79844:intron | 35.0% | |
! | AATGATGAATGATGATGAGG+AGG | + | chr8.2:68278485-68278504 | MS.gene79844:CDS | 35.0% |
! | GGAAATGATGAATGATGATG+AGG | + | chr8.2:68278482-68278501 | MS.gene79844:CDS | 35.0% |
! | GGTTGTATATGAGGTGATTT+TGG | - | chr8.2:68277306-68277325 | None:intergenic | 35.0% |
! | TGATGGTGATGAATAAGAGA+AGG | - | chr8.2:68277283-68277302 | None:intergenic | 35.0% |
!! | ACTTGACTTGTTTGTTCTGT+AGG | - | chr8.2:68277144-68277163 | None:intergenic | 35.0% |
!! | ATATGAGGTGATTTTGGTGA+TGG | - | chr8.2:68277300-68277319 | None:intergenic | 35.0% |
!! | CTTGACTTGTTTGTTCTGTA+GGG | - | chr8.2:68277143-68277162 | None:intergenic | 35.0% |
!! | GTTGTTTTCATTAGCTATCC+TGG | - | chr8.2:68278033-68278052 | None:intergenic | 35.0% |
!!! | AGCTGTTTTGGTTGTATATG+AGG | - | chr8.2:68277315-68277334 | None:intergenic | 35.0% |
!!! | CTTGTTTTGTAAAGGGTTGT+TGG | - | chr8.2:68278380-68278399 | None:intergenic | 35.0% |
AAAACAGTAGCATCATCTGG+TGG | + | chr8.2:68278588-68278607 | MS.gene79844:CDS | 40.0% | |
AATTTCTGTGAGTAGGAGCA+GGG | - | chr8.2:68278293-68278312 | None:intergenic | 40.0% | |
ACTCACAGAAATTCTCTTGC+TGG | + | chr8.2:68278300-68278319 | MS.gene79844:CDS | 40.0% | |
AGAAGCTCTCATCAGACATA+TGG | + | chr8.2:68277674-68277693 | MS.gene79844:CDS | 40.0% | |
AGAGCAATACTAGCAGCAAA+AGG | - | chr8.2:68278630-68278649 | None:intergenic | 40.0% | |
AGTTTCATCATCCACATCAG+AGG | + | chr8.2:68278398-68278417 | MS.gene79844:CDS | 40.0% | |
ATATGGGCATGGAGGAAATA+TGG | + | chr8.2:68277691-68277710 | MS.gene79844:CDS | 40.0% | |
GAAGCTCTCATCAGACATAT+GGG | + | chr8.2:68277675-68277694 | MS.gene79844:CDS | 40.0% | |
GAGCAATACTAGCAGCAAAA+GGG | - | chr8.2:68278629-68278648 | None:intergenic | 40.0% | |
GCAAGAGAATTTCTGTGAGT+AGG | - | chr8.2:68278300-68278319 | None:intergenic | 40.0% | |
GGAAAAACAGTAGCATCATC+TGG | + | chr8.2:68278585-68278604 | MS.gene79844:CDS | 40.0% | |
GTCAGAGAGCAAAGATGATT+TGG | + | chr8.2:68278458-68278477 | MS.gene79844:CDS | 40.0% | |
TCACACCAAGATCCAAAAGA+AGG | + | chr8.2:68277373-68277392 | MS.gene79844:CDS | 40.0% | |
TTGTGTCTGTGTGATTCACA+GGG | + | chr8.2:68278158-68278177 | MS.gene79844:intron | 40.0% | |
! | AGAGAGCAAAGATGATTTGG+AGG | + | chr8.2:68278461-68278480 | MS.gene79844:CDS | 40.0% |
! | GATGAATTGACAGGTTTTGC+TGG | + | chr8.2:68278564-68278583 | MS.gene79844:CDS | 40.0% |
! | TAGCTAGGAAACAAGTTGAG+AGG | + | chr8.2:68278214-68278233 | MS.gene79844:CDS | 40.0% |
!! | AGTTGAAGAAGGTGTTGATG+AGG | - | chr8.2:68277091-68277110 | None:intergenic | 40.0% |
!! | CTTGTTTTCATAAGCTCTCC+AGG | + | chr8.2:68278012-68278031 | MS.gene79844:intron | 40.0% |
!! | TCTTTTGGATCTTGGTGTGA+TGG | - | chr8.2:68277373-68277392 | None:intergenic | 40.0% |
AGTATTGCTCTTCCTGCTTG+TGG | + | chr8.2:68278639-68278658 | MS.gene79844:CDS | 45.0% | |
CTTGTGTCTGTGTGATTCAC+AGG | + | chr8.2:68278157-68278176 | MS.gene79844:intron | 45.0% | |
GAATTTCTGTGAGTAGGAGC+AGG | - | chr8.2:68278294-68278313 | None:intergenic | 45.0% | |
GAGAAGGAAGTAGAAGAGAG+AGG | - | chr8.2:68277267-68277286 | None:intergenic | 45.0% | |
GATCTACATGCTGTAGTCAG+AGG | + | chr8.2:68277000-68277019 | MS.gene79844:intron | 45.0% | |
GGATATGGTGACCCTTTGAT+TGG | - | chr8.2:68277724-68277743 | None:intergenic | 45.0% | |
GTGACAGTTTGTGGTGACAA+TGG | - | chr8.2:68278342-68278361 | None:intergenic | 45.0% | |
TCAAAGGGTCACCATATCCA+AGG | + | chr8.2:68277725-68277744 | MS.gene79844:CDS | 45.0% | |
TCTCATCAGACATATGGGCA+TGG | + | chr8.2:68277680-68277699 | MS.gene79844:CDS | 45.0% | |
TCTTCAGCAGTGACAGTTTG+TGG | - | chr8.2:68278351-68278370 | None:intergenic | 45.0% | |
TGTGTCTGTGTGATTCACAG+GGG | + | chr8.2:68278159-68278178 | MS.gene79844:intron | 45.0% | |
!! | TCATCTGGTGGTGACTGTTT+TGG | + | chr8.2:68278600-68278619 | MS.gene79844:CDS | 45.0% |
!! | TGAAGAAGGTGTTGATGAGG+TGG | - | chr8.2:68277088-68277107 | None:intergenic | 45.0% |
!!! | TTAAATTTGATAAATATTTT+TGG | - | chr8.2:68277781-68277800 | None:intergenic | 5.0% |
ATCAGAGGCTGAAGAGGAAG+AGG | + | chr8.2:68278413-68278432 | MS.gene79844:CDS | 50.0% | |
ATCCACATCAGAGGCTGAAG+AGG | + | chr8.2:68278407-68278426 | MS.gene79844:CDS | 50.0% | |
ATTGCTCTTCCTGCTTGTGG+TGG | + | chr8.2:68278642-68278661 | MS.gene79844:CDS | 50.0% | |
CATCAGACATATGGGCATGG+AGG | + | chr8.2:68277683-68277702 | MS.gene79844:CDS | 50.0% | |
TTCCTCTTCAGCCTCTGATG+TGG | - | chr8.2:68278412-68278431 | None:intergenic | 50.0% | |
! | TGTTGATGAGGTGGCTAAGG+TGG | - | chr8.2:68277079-68277098 | None:intergenic | 50.0% |
!! | AGGTGTTGATGAGGTGGCTA+AGG | - | chr8.2:68277082-68277101 | None:intergenic | 50.0% |
TGATGAGGTGGCTAAGGTGG+TGG | - | chr8.2:68277076-68277095 | None:intergenic | 55.0% | |
! | TAAGGTGGTGGTTGAGGTGG+TGG | - | chr8.2:68277064-68277083 | None:intergenic | 55.0% |
! | GGCTAAGGTGGTGGTTGAGG+TGG | - | chr8.2:68277067-68277086 | None:intergenic | 60.0% |
! | GGTGGCTAAGGTGGTGGTTG+AGG | - | chr8.2:68277070-68277089 | None:intergenic | 60.0% |
AGGAGGAGGTGGAGGAGGTG+AGG | - | chr8.2:68277035-68277054 | None:intergenic | 65.0% | |
GGAGGTGGAGGAGGTGAGGT+TGG | - | chr8.2:68277031-68277050 | None:intergenic | 65.0% | |
! | GGTGGTGGTTGAGGTGGTGG+AGG | - | chr8.2:68277061-68277080 | None:intergenic | 65.0% |
!! | GGTGGTTGAGGTGGTGGAGG+AGG | - | chr8.2:68277058-68277077 | None:intergenic | 65.0% |
!! | GGTTGAGGTGGTGGAGGAGG+AGG | - | chr8.2:68277055-68277074 | None:intergenic | 65.0% |
!! | TGAGGTGGTGGAGGAGGAGG+AGG | - | chr8.2:68277052-68277071 | None:intergenic | 65.0% |
GGAGGAGGAGGAGGAGGTGG+AGG | - | chr8.2:68277043-68277062 | None:intergenic | 70.0% | |
GGAGGAGGAGGAGGTGGAGG+AGG | - | chr8.2:68277040-68277059 | None:intergenic | 70.0% | |
GGTGGAGGAGGAGGAGGAGG+TGG | - | chr8.2:68277046-68277065 | None:intergenic | 70.0% | |
!! | GGTGGTGGAGGAGGAGGAGG+AGG | - | chr8.2:68277049-68277068 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 68276985 | 68278671 | 68276985 | ID=MS.gene79844 |
chr8.2 | mRNA | 68276985 | 68278671 | 68276985 | ID=MS.gene79844.t1;Parent=MS.gene79844 |
chr8.2 | exon | 68276985 | 68276990 | 68276985 | ID=MS.gene79844.t1.exon1;Parent=MS.gene79844.t1 |
chr8.2 | CDS | 68276985 | 68276990 | 68276985 | ID=cds.MS.gene79844.t1;Parent=MS.gene79844.t1 |
chr8.2 | exon | 68277333 | 68277394 | 68277333 | ID=MS.gene79844.t1.exon2;Parent=MS.gene79844.t1 |
chr8.2 | CDS | 68277333 | 68277394 | 68277333 | ID=cds.MS.gene79844.t1;Parent=MS.gene79844.t1 |
chr8.2 | exon | 68277636 | 68277746 | 68277636 | ID=MS.gene79844.t1.exon3;Parent=MS.gene79844.t1 |
chr8.2 | CDS | 68277636 | 68277746 | 68277636 | ID=cds.MS.gene79844.t1;Parent=MS.gene79844.t1 |
chr8.2 | exon | 68278179 | 68278671 | 68278179 | ID=MS.gene79844.t1.exon4;Parent=MS.gene79844.t1 |
chr8.2 | CDS | 68278179 | 68278671 | 68278179 | ID=cds.MS.gene79844.t1;Parent=MS.gene79844.t1 |
Gene Sequence |
Protein sequence |