Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80668.t1 | XP_003616591.1 | 94.8 | 305 | 8 | 1 | 1 | 305 | 120 | 416 | 1.40E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80668.t1 | G7KGW7 | 94.8 | 305 | 8 | 1 | 1 | 305 | 120 | 416 | 1.0e-110 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene80668 | -0.815014 | 1.15E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene80668 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene80668 | 0.817202 | 3.73E-52 | -1.69E-46 |
| MS.gene04987 | MS.gene80668 | 0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene80668 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene051678 | MS.gene80668 | 0.809941 | 1.48E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene80668 | 0.819802 | 9.59E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene80668 | 0.819713 | 1.01E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene80668 | -0.840257 | 9.70E-58 | -1.69E-46 |
| MS.gene052358 | MS.gene80668 | -0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene80668 | 0.818111 | 2.32E-52 | -1.69E-46 |
| MS.gene053294 | MS.gene80668 | 0.844508 | 7.24E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene80668 | 0.827883 | 1.22E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene80668 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene80668 | 0.819474 | 1.14E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene80668 | 0.829119 | 6.15E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene80668 | 0.861948 | 7.17E-64 | -1.69E-46 |
| MS.gene057079 | MS.gene80668 | 0.878114 | 3.65E-69 | -1.69E-46 |
| MS.gene057555 | MS.gene80668 | 0.83384 | 4.23E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene80668 | 0.80355 | 3.30E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene80668 | 0.828675 | 7.88E-55 | -1.69E-46 |
| MS.gene060297 | MS.gene80668 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene060586 | MS.gene80668 | 0.82868 | 7.86E-55 | -1.69E-46 |
| MS.gene060879 | MS.gene80668 | 0.814429 | 1.55E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene80668 | -0.804288 | 2.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80668.t1 | MTR_5g082130 | 94.426 | 305 | 9 | 1 | 1 | 305 | 120 | 416 | 0.0 | 583 |
| MS.gene80668.t1 | MTR_3g463450 | 40.510 | 353 | 147 | 5 | 1 | 299 | 165 | 508 | 5.02e-77 | 244 |
| MS.gene80668.t1 | MTR_2g103795 | 40.187 | 107 | 64 | 0 | 185 | 291 | 137 | 243 | 6.79e-18 | 82.0 |
| MS.gene80668.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 174 | 347 | 9.58e-18 | 83.2 |
| MS.gene80668.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 151 | 324 | 1.34e-17 | 82.4 |
| MS.gene80668.t1 | MTR_7g099260 | 35.849 | 106 | 66 | 1 | 190 | 295 | 240 | 343 | 1.43e-15 | 76.6 |
| MS.gene80668.t1 | MTR_4g114690 | 38.679 | 106 | 65 | 0 | 178 | 283 | 153 | 258 | 1.17e-14 | 73.2 |
| MS.gene80668.t1 | MTR_4g010250 | 36.449 | 107 | 66 | 2 | 185 | 290 | 122 | 227 | 3.19e-14 | 71.6 |
| MS.gene80668.t1 | MTR_1g073230 | 36.458 | 96 | 61 | 0 | 190 | 285 | 276 | 371 | 5.28e-12 | 66.2 |
| MS.gene80668.t1 | MTR_2g103795 | 40.230 | 87 | 52 | 0 | 185 | 271 | 137 | 223 | 5.35e-12 | 64.7 |
| MS.gene80668.t1 | MTR_5g029910 | 33.684 | 95 | 63 | 0 | 189 | 283 | 124 | 218 | 7.95e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80668.t1 | AT3G47080 | 38.906 | 329 | 154 | 7 | 1 | 299 | 198 | 509 | 1.42e-69 | 224 |
| MS.gene80668.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.39e-45 | 161 |
| MS.gene80668.t1 | AT2G29670 | 51.351 | 111 | 53 | 1 | 1 | 111 | 164 | 273 | 4.40e-30 | 119 |
| MS.gene80668.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.39e-45 | 161 |
| MS.gene80668.t1 | AT2G29670 | 51.351 | 111 | 53 | 1 | 1 | 111 | 164 | 273 | 4.40e-30 | 119 |
| MS.gene80668.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.11e-42 | 153 |
| MS.gene80668.t1 | AT1G07280 | 31.013 | 316 | 179 | 6 | 1 | 283 | 187 | 496 | 1.38e-35 | 135 |
| MS.gene80668.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.11e-42 | 153 |
| MS.gene80668.t1 | AT1G07280 | 31.013 | 316 | 179 | 6 | 1 | 283 | 187 | 496 | 1.38e-35 | 135 |
| MS.gene80668.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.11e-42 | 153 |
| MS.gene80668.t1 | AT1G07280 | 31.013 | 316 | 179 | 6 | 1 | 283 | 187 | 496 | 1.38e-35 | 135 |
| MS.gene80668.t1 | AT1G07280 | 31.034 | 290 | 178 | 5 | 1 | 283 | 187 | 461 | 1.32e-33 | 129 |
| MS.gene80668.t1 | AT1G07280 | 47.191 | 89 | 41 | 1 | 135 | 223 | 389 | 471 | 7.18e-17 | 81.3 |
| MS.gene80668.t1 | AT4G17940 | 37.255 | 102 | 64 | 0 | 182 | 283 | 145 | 246 | 1.77e-15 | 75.5 |
| MS.gene80668.t1 | AT5G20190 | 40.404 | 99 | 59 | 0 | 187 | 285 | 156 | 254 | 1.37e-14 | 73.2 |
| MS.gene80668.t1 | AT1G80130 | 38.384 | 99 | 61 | 0 | 185 | 283 | 163 | 261 | 1.75e-13 | 70.1 |
| MS.gene80668.t1 | AT4G32340 | 38.384 | 99 | 60 | 1 | 188 | 285 | 111 | 209 | 1.16e-11 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5.4:-64770809 | MS.gene80668:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5.4:-64771932 | MS.gene80668:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5.4:-64772148 | MS.gene80668:CDS |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5.4:-64772160 | MS.gene80668:CDS |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5.4:+64770747 | None:intergenic |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5.4:-64770725 | MS.gene80668:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5.4:-64772187 | MS.gene80668:CDS |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5.4:+64771880 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5.4:+64770666 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5.4:-64771977 | MS.gene80668:CDS |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5.4:-64772381 | MS.gene80668:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5.4:-64770765 | MS.gene80668:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5.4:-64771880 | MS.gene80668:CDS |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5.4:-64770808 | MS.gene80668:CDS |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5.4:-64770817 | MS.gene80668:CDS |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5.4:-64772091 | MS.gene80668:CDS |
| AAATTGATGATTCATTTGTT+TGG | 0.446226 | 5.4:-64772200 | MS.gene80668:CDS |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5.4:-64772261 | MS.gene80668:CDS |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5.4:+64770849 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5.4:-64772238 | MS.gene80668:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5.4:-64771761 | MS.gene80668:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5.4:-64772250 | MS.gene80668:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5.4:-64771944 | MS.gene80668:CDS |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5.4:-64770717 | MS.gene80668:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5.4:-64772019 | MS.gene80668:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.482870 | 5.4:+64771796 | None:intergenic |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5.4:-64772275 | MS.gene80668:CDS |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5.4:+64772060 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5.4:-64771974 | MS.gene80668:CDS |
| GTTTCTGAGTCCTGTTTCTG+TGG | 0.503600 | 5.4:-64771890 | MS.gene80668:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5.4:-64771879 | MS.gene80668:CDS |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5.4:-64770778 | MS.gene80668:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5.4:-64771751 | MS.gene80668:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5.4:-64771938 | MS.gene80668:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5.4:-64771945 | MS.gene80668:CDS |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5.4:-64771866 | MS.gene80668:CDS |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5.4:-64771990 | MS.gene80668:CDS |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5.4:-64770877 | MS.gene80668:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5.4:-64770827 | MS.gene80668:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5.4:+64770709 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5.4:-64771750 | MS.gene80668:intron |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5.4:-64770714 | MS.gene80668:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5.4:-64772004 | MS.gene80668:CDS |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5.4:+64771752 | None:intergenic |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5.4:-64771878 | MS.gene80668:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5.4:+64772150 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5.4:-64772274 | MS.gene80668:CDS |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5.4:-64770865 | MS.gene80668:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5.4:-64772051 | MS.gene80668:CDS |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5.4:-64771943 | MS.gene80668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5.4:64771723-64771742 | None:intergenic | 15.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5.4:64772383-64772402 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5.4:64771330-64771349 | MS.gene80668:intron | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5.4:64772130-64772149 | None:intergenic | 20.0% |
| !!! | AAATTGATGATTCATTTGTT+TGG | - | chr5.4:64770846-64770865 | MS.gene80668:CDS | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5.4:64771611-64771630 | MS.gene80668:intron | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5.4:64772128-64772147 | MS.gene80668:CDS | 20.0% |
| !!! | TTAGATGTTTTTGCATTATA+TGG | - | chr5.4:64771359-64771378 | MS.gene80668:intron | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5.4:64772016-64772035 | None:intergenic | 20.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5.4:64771448-64771467 | None:intergenic | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5.4:64770665-64770684 | MS.gene80668:CDS | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5.4:64771740-64771759 | MS.gene80668:intron | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5.4:64771751-64771770 | MS.gene80668:CDS | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5.4:64771436-64771455 | MS.gene80668:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5.4:64770955-64770974 | MS.gene80668:intron | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5.4:64771496-64771515 | None:intergenic | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5.4:64771992-64772011 | None:intergenic | 25.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5.4:64770771-64770790 | MS.gene80668:CDS | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5.4:64771102-64771121 | MS.gene80668:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5.4:64771069-64771088 | MS.gene80668:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5.4:64770772-64770791 | MS.gene80668:CDS | 30.0% | |
| ACTTCATTCATCAATGATGA+AGG | + | chr5.4:64770989-64771008 | None:intergenic | 30.0% | |
| ATAACATCAACCATAAGAGT+TGG | + | chr5.4:64770899-64770918 | None:intergenic | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5.4:64772302-64772321 | None:intergenic | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5.4:64772238-64772257 | MS.gene80668:CDS | 30.0% | |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5.4:64771879-64771898 | MS.gene80668:CDS | 30.0% | |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5.4:64772237-64772256 | MS.gene80668:CDS | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5.4:64770995-64771014 | MS.gene80668:intron | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5.4:64771550-64771569 | MS.gene80668:intron | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5.4:64771549-64771568 | MS.gene80668:intron | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5.4:64770898-64770917 | MS.gene80668:intron | 30.0% |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5.4:64770859-64770878 | MS.gene80668:CDS | 30.0% |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5.4:64772229-64772248 | MS.gene80668:CDS | 30.0% |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5.4:64771622-64771641 | MS.gene80668:intron | 30.0% |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5.4:64771042-64771061 | MS.gene80668:intron | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5.4:64771956-64771975 | None:intergenic | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5.4:64771103-64771122 | MS.gene80668:intron | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5.4:64771951-64771970 | MS.gene80668:CDS | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5.4:64771101-64771120 | MS.gene80668:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5.4:64771253-64771272 | None:intergenic | 35.0% | |
| GTTGTGATTACACACAATTC+AGG | + | chr5.4:64771778-64771797 | None:intergenic | 35.0% | |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5.4:64771027-64771046 | MS.gene80668:intron | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5.4:64771950-64771969 | None:intergenic | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5.4:64771551-64771570 | MS.gene80668:intron | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5.4:64771296-64771315 | MS.gene80668:intron | 35.0% | |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5.4:64771637-64771656 | None:intergenic | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5.4:64772321-64772340 | MS.gene80668:CDS | 35.0% |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5.4:64772219-64772238 | MS.gene80668:CDS | 35.0% |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5.4:64770808-64770827 | MS.gene80668:CDS | 35.0% |
| !!! | ATGGTTTTAAATTGCAGTCG+CGG | - | chr5.4:64771378-64771397 | MS.gene80668:intron | 35.0% |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5.4:64771621-64771640 | MS.gene80668:intron | 35.0% |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5.4:64771558-64771577 | None:intergenic | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5.4:64771056-64771075 | MS.gene80668:intron | 40.0% | |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5.4:64770886-64770905 | MS.gene80668:CDS | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5.4:64771939-64771958 | None:intergenic | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5.4:64771297-64771316 | None:intergenic | 40.0% | |
| CGCGGTTATGCTATAAAATG+CGG | - | chr5.4:64771396-64771415 | MS.gene80668:intron | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | chr5.4:64771821-64771840 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5.4:64771295-64771314 | MS.gene80668:intron | 40.0% | |
| GATTGAAGGGGATCAATATG+AGG | - | chr5.4:64771180-64771199 | MS.gene80668:intron | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5.4:64772268-64772287 | MS.gene80668:CDS | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | chr5.4:64771813-64771832 | MS.gene80668:CDS | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5.4:64771072-64771091 | MS.gene80668:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5.4:64771285-64771304 | MS.gene80668:intron | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5.4:64770785-64770804 | MS.gene80668:CDS | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5.4:64770796-64770815 | MS.gene80668:CDS | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5.4:64771168-64771187 | MS.gene80668:intron | 40.0% |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5.4:64771167-64771186 | MS.gene80668:intron | 40.0% |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5.4:64771114-64771133 | MS.gene80668:intron | 45.0% | |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5.4:64771413-64771432 | MS.gene80668:intron | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5.4:64771169-64771188 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5.4:64772169-64772188 | MS.gene80668:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5.4:64772200-64772219 | None:intergenic | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5.4:64771801-64771820 | None:intergenic | 45.0% | |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5.4:64772332-64772351 | MS.gene80668:CDS | 45.0% |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5.4:64771166-64771185 | MS.gene80668:intron | 45.0% |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5.4:64772329-64772348 | MS.gene80668:CDS | 45.0% |
| !! | GTTTCTGAGTCCTGTTTCTG+TGG | - | chr5.4:64771156-64771175 | MS.gene80668:intron | 45.0% |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5.4:64771108-64771127 | MS.gene80668:intron | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5.4:64771800-64771819 | None:intergenic | 50.0% | |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5.4:64772340-64772359 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5.4:64772281-64772300 | MS.gene80668:CDS | 50.0% |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5.4:64772181-64772200 | MS.gene80668:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64770656 | 64772412 | 64770656 | ID=MS.gene80668 |
| chr5.4 | mRNA | 64770656 | 64772412 | 64770656 | ID=MS.gene80668.t1;Parent=MS.gene80668 |
| chr5.4 | exon | 64771751 | 64772412 | 64771751 | ID=MS.gene80668.t1.exon1;Parent=MS.gene80668.t1 |
| chr5.4 | CDS | 64771751 | 64772412 | 64771751 | ID=cds.MS.gene80668.t1;Parent=MS.gene80668.t1 |
| chr5.4 | exon | 64770656 | 64770911 | 64770656 | ID=MS.gene80668.t1.exon2;Parent=MS.gene80668.t1 |
| chr5.4 | CDS | 64770656 | 64770911 | 64770656 | ID=cds.MS.gene80668.t1;Parent=MS.gene80668.t1 |
| Gene Sequence |
| Protein sequence |
