AlfalfaGEDB | MS.gene80668

M. sativa cultivar XinJiangDaYe / MS.gene80668

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80668.t1	XP_003616591.1	94.8	305	8	1	1	305	120	416	1.40E-110	409.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80668.t1	G7KGW7	94.8	305	8	1	1	305	120	416	1.0e-110	409.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049293	MS.gene80668	-0.815014	1.15E-51	-1.69E-46
MS.gene049580	MS.gene80668	0.804912	1.72E-49	-1.69E-46
MS.gene049825	MS.gene80668	0.817202	3.73E-52	-1.69E-46
MS.gene04987	MS.gene80668	0.801643	8.17E-49	-1.69E-46
MS.gene050303	MS.gene80668	0.811478	6.86E-51	-1.69E-46
MS.gene051678	MS.gene80668	0.809941	1.48E-50	-1.69E-46
MS.gene052176	MS.gene80668	0.819802	9.59E-53	-1.69E-46
MS.gene052302	MS.gene80668	0.819713	1.01E-52	-1.69E-46
MS.gene052309	MS.gene80668	-0.840257	9.70E-58	-1.69E-46
MS.gene052358	MS.gene80668	-0.809302	2.02E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80668.t1	MTR_5g082130	94.426	305	9	1	1	305	120	416	0.0	583
MS.gene80668.t1	MTR_3g463450	40.510	353	147	5	1	299	165	508	5.02e-77	244
MS.gene80668.t1	MTR_2g103795	40.187	107	64	0	185	291	137	243	6.79e-18	82.0
MS.gene80668.t1	MTR_7g098450	31.073	177	116	2	112	285	174	347	9.58e-18	83.2
MS.gene80668.t1	MTR_7g098450	31.073	177	116	2	112	285	151	324	1.34e-17	82.4
MS.gene80668.t1	MTR_7g099260	35.849	106	66	1	190	295	240	343	1.43e-15	76.6
MS.gene80668.t1	MTR_4g114690	38.679	106	65	0	178	283	153	258	1.17e-14	73.2
MS.gene80668.t1	MTR_4g010250	36.449	107	66	2	185	290	122	227	3.19e-14	71.6
MS.gene80668.t1	MTR_1g073230	36.458	96	61	0	190	285	276	371	5.28e-12	66.2
MS.gene80668.t1	MTR_2g103795	40.230	87	52	0	185	271	137	223	5.35e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80668.t1	AT3G47080	38.906	329	154	7	1	299	198	509	1.42e-69	224
MS.gene80668.t1	AT2G29670	47.879	165	83	1	135	299	368	529	2.39e-45	161
MS.gene80668.t1	AT2G29670	51.351	111	53	1	1	111	164	273	4.40e-30	119
MS.gene80668.t1	AT2G29670	47.879	165	83	1	135	299	368	529	2.39e-45	161
MS.gene80668.t1	AT2G29670	51.351	111	53	1	1	111	164	273	4.40e-30	119
MS.gene80668.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.11e-42	153
MS.gene80668.t1	AT1G07280	31.013	316	179	6	1	283	187	496	1.38e-35	135
MS.gene80668.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.11e-42	153
MS.gene80668.t1	AT1G07280	31.013	316	179	6	1	283	187	496	1.38e-35	135
MS.gene80668.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.11e-42	153

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Find 50 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATGCTTTGCAAACA+AGG	0.483766	5.4:-64772275	MS.gene80668:CDS
AAAGAAGGAGTTAACAGAAG+AGG	0.575932	5.4:-64772004	MS.gene80668:CDS
AAAGATGCAAAGAGAATTGA+GGG	0.474427	5.4:-64771944	MS.gene80668:CDS
AAAGTTGTGGAATTCTTTGT+TGG	0.394009	5.4:-64771977	MS.gene80668:CDS
AAATCATGCTTTGCAAACAA+GGG	0.615943	5.4:-64772274	MS.gene80668:CDS
AAATTGATGATTCATTTGTT+TGG	0.446226	5.4:-64772200	MS.gene80668:CDS
AACTCTTATGGTTGATGTTA+TGG	0.249882	5.4:-64772148	MS.gene80668:CDS
AAGAAGTTACAATTAGAAGA+AGG	0.410886	5.4:-64772381	MS.gene80668:CDS
AAGATGCAAAGAGAATTGAG+GGG	0.796557	5.4:-64771943	MS.gene80668:CDS
AAGTTATCTAATTCTTCTAT+AGG	0.388681	5.4:+64770666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATGCTTTGCAAACA+AGG	-	chr5.4:64770771-64770790	MS.gene80668:CDS	30.0%
AAAGATGCAAAGAGAATTGA+GGG	-	chr5.4:64771102-64771121	MS.gene80668:intron	30.0%
AAAGTTGTGGAATTCTTTGT+TGG	-	chr5.4:64771069-64771088	MS.gene80668:intron	30.0%
AAATCATGCTTTGCAAACAA+GGG	-	chr5.4:64770772-64770791	MS.gene80668:CDS	30.0%
ACTTCATTCATCAATGATGA+AGG	+	chr5.4:64770989-64771008	None:intergenic	30.0%
ATAACATCAACCATAAGAGT+TGG	+	chr5.4:64770899-64770918	None:intergenic	30.0%
GATAAATAGTAAGTGTTTCC+AGG	+	chr5.4:64772302-64772321	None:intergenic	30.0%
GTGGATAAGAAAGGATAATT+GGG	-	chr5.4:64772238-64772257	MS.gene80668:CDS	30.0%
TCAAAATCTGCGTTGAAATA+TGG	-	chr5.4:64771879-64771898	MS.gene80668:CDS	30.0%
TGTGGATAAGAAAGGATAAT+TGG	-	chr5.4:64772237-64772256	MS.gene80668:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	64770656	64772412	64770656	ID=MS.gene80668
chr5.4	mRNA	64770656	64772412	64770656	ID=MS.gene80668.t1;Parent=MS.gene80668
chr5.4	exon	64771751	64772412	64771751	ID=MS.gene80668.t1.exon1;Parent=MS.gene80668.t1
chr5.4	CDS	64771751	64772412	64771751	ID=cds.MS.gene80668.t1;Parent=MS.gene80668.t1
chr5.4	exon	64770656	64770911	64770656	ID=MS.gene80668.t1.exon2;Parent=MS.gene80668.t1
chr5.4	CDS	64770656	64770911	64770656	ID=cds.MS.gene80668.t1;Parent=MS.gene80668.t1

Gene Sequence

>MS.gene80668

ATGATTAAGAAGAAGTTACAATTAGAAGAAGGTTTGAAAGATGAAGCAAGTAAACTGAATAATTGTTCTGTAAAGAAGAGTTTTTCATCTATGTTGTTTATGCTTCATGAACTTCAAAATCATGCTTTGCAAACAAGGGAGTTACTTTGTGGTGAAGACTTGGAAAGTGTTATGGTTAAGCTAAATAGAGAAATTGATGATTCATTTGTTTGGTTGTTTCAACAGGTTTTCAGTGAAACACCAACTCTTATGGTTGATGTTATGGTTTTTTTAAGTAATTTTTCTTTGTTTTCTATGAGTAACAACAATAACACTGTTAAGGATGTTAATCCTTCATCATTGATGAATGAAGTTCTACATGGTGATGTTGTTCAAGATGAGTGTGTAAAGAAGGAGTTAACAGAAGAGGAAGAAAAGTTGTGGAATTCTTTGTTGGAGGAAGCTTCAAAGATGCAAAGAGAATTGAGGGGTGAGGATTTGGATCATGAAACAATGATGAAGTTTCTGAGTCCTGTTTCTGTGGAGATTGAAGGGGATCAATATGAGGAATATGAGAAAACTGATGCTTATTACAAAAAGCATATAAGTCTTGCACCTTACAATTCACTTCTTCTGTCAAACTATGCACAGTTTCTCTTCCTTGTCATGAAGGACAATGATGGGTAAGTTCTCAAAATTCAATTGTGATACAATTTGGCTAGAATTAGATGTTTTTGCATTATATGGTTTTAAATTGCAGTCGCGGTTATGCTATAAAATGCGGTCGATGTTGTTCATAGGCTTCAAAATCCTTTATATTGTGGTTGCAATTTTGTTGTTGCAATCTGCTAATTAAAACCATGTTCTGTATTAAGAGAAAAATATACTTAGAAAAGAATCATATGATATGCTTGTTTGTTCCTTTATGCAATGAAGGGGTGATTAATTTTTTATTTGTTTTGAAGCTAAAATTAGTAATTTTCAGTGTATTTGTTTTGGCCTAAAGTGGGTTGAAATGACATTTTTAAGTGTTGACAGACAAATATGAGTAAGAAAAAAATGCTAATGAATATTATGATTGCTGTCCTTAAGTTTTATTATATAGACATTATGCTTATGTATGTTAGGTACAAAAAAGGACCTGAATTGTGTGTAATCACAACCCGTGATTGCGCATAGTTAGCCACATCTAATCAGACGGTTTAGATTTCAAGCTCAGCATTTTAGATTTTAAAAAATATATATCAAAATCTGCGTTGAAATATGGATCATGTACATGCAGTTAACTGCGTGCAGTCACACCGCACACAATCCAAATCCTATGCAAATGTGTGATTGGTTAATTTTGAATAAGCCTTCAAAATACTTTTAGCTCTTACCAAATAGCAATGCTATATATAATAAGAGTAACATACTTTTAGTTCAAATAAATGTGCATATGCATTATTCTTTGAAGTTTTAGAAGTTACATACTTCATTACTAATTTAATTTCCTTATTTTGTACATTTGATATGGTTACAGTGCTGAAGAATACTACAAGCAATCAGTGCTAGTGGAGTCACCAGAGGCTGAAGCTTATTGTAGATATGCTGATTTCTTGTTGTGGATAAGAAAGGATAATTGGGCAGCAGAGCTGAGATATCTACAAGCATTGGAAGCAGATCCTGGAAACACTTACTATTTATCAAAGTATGCTAGTTTCCTTTGGAACACTGGTGGACAACAAGAGAATAGTACTAGCTTTCCTATAGAAGAATTAGATAACTTACAAATATGA

Protein sequence

>MS.gene80668.t1

MIKKKLQLEEGLKDEASKLNNCSVKKSFSSMLFMLHELQNHALQTRELLCGEDLESVMVKLNREIDDSFVWLFQQVFSETPTLMVDVMVFLSNFSLFSMSNNNNTVKDVNPSSLMNEVLHGDVVQDECVKKELTEEEEKLWNSLLEEASKMQRELRGEDLDHETMMKFLSPVSVEIEGDQYEEYEKTDAYYKKHISLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVLVESPEAEAYCRYADFLLWIRKDNWAAELRYLQALEADPGNTYYLSKYASFLWNTGGQQENSTSFPIEELDNLQI