Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80717.t1 | XP_003613199.1 | 99.8 | 423 | 1 | 0 | 1 | 423 | 1 | 423 | 2.00E-240 | 841.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80717.t1 | Q9SGY2 | 88.2 | 423 | 50 | 0 | 1 | 423 | 1 | 423 | 1.7e-219 | 763.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80717.t1 | G7K076 | 99.8 | 423 | 1 | 0 | 1 | 423 | 1 | 423 | 1.5e-240 | 841.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene80717 | 0.807584 | 4.71E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene80717 | -0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene050322 | MS.gene80717 | 0.81894 | 1.51E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene80717 | -0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene050521 | MS.gene80717 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene050818 | MS.gene80717 | 0.829272 | 5.65E-55 | -1.69E-46 |
| MS.gene052015 | MS.gene80717 | 0.816156 | 6.39E-52 | -1.69E-46 |
| MS.gene052494 | MS.gene80717 | 0.820308 | 7.35E-53 | -1.69E-46 |
| MS.gene053097 | MS.gene80717 | 0.840192 | 1.01E-57 | -1.69E-46 |
| MS.gene053278 | MS.gene80717 | 0.803937 | 2.75E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene80717 | -0.830068 | 3.62E-55 | -1.69E-46 |
| MS.gene055719 | MS.gene80717 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene80717 | -0.812819 | 3.50E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene80717 | -0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene80717 | 0.802113 | 6.55E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene80717 | 0.818254 | 2.16E-52 | -1.69E-46 |
| MS.gene058996 | MS.gene80717 | 0.829135 | 6.10E-55 | -1.69E-46 |
| MS.gene059103 | MS.gene80717 | 0.816505 | 5.34E-52 | -1.69E-46 |
| MS.gene059480 | MS.gene80717 | 0.824553 | 7.59E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene80717 | -0.817673 | 2.92E-52 | -1.69E-46 |
| MS.gene061044 | MS.gene80717 | 0.825477 | 4.59E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065831 | MS.gene80717 | PPI |
| MS.gene80717 | MS.gene60924 | PPI |
| MS.gene80717 | MS.gene53461 | PPI |
| MS.gene80717 | MS.gene90397 | PPI |
| MS.gene80717 | MS.gene60923 | PPI |
| MS.gene80717 | MS.gene92246 | PPI |
| MS.gene80717 | MS.gene44351 | PPI |
| MS.gene80717 | MS.gene027658 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80717.t1 | MTR_5g033920 | 99.764 | 423 | 1 | 0 | 1 | 423 | 1 | 423 | 0.0 | 866 |
| MS.gene80717.t1 | MTR_5g033920 | 98.140 | 430 | 1 | 1 | 1 | 423 | 1 | 430 | 0.0 | 857 |
| MS.gene80717.t1 | MTR_2g062920 | 91.726 | 423 | 35 | 0 | 1 | 423 | 1 | 423 | 0.0 | 801 |
| MS.gene80717.t1 | MTR_2g062920 | 92.562 | 363 | 27 | 0 | 61 | 423 | 1 | 363 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80717.t1 | AT1G10670 | 88.180 | 423 | 50 | 0 | 1 | 423 | 1 | 423 | 0.0 | 781 |
| MS.gene80717.t1 | AT1G10670 | 88.180 | 423 | 50 | 0 | 1 | 423 | 1 | 423 | 0.0 | 781 |
| MS.gene80717.t1 | AT1G10670 | 88.180 | 423 | 50 | 0 | 1 | 423 | 1 | 423 | 0.0 | 781 |
| MS.gene80717.t1 | AT1G60810 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| MS.gene80717.t1 | AT1G60810 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| MS.gene80717.t1 | AT1G10670 | 84.199 | 443 | 50 | 1 | 1 | 423 | 1 | 443 | 0.0 | 767 |
| MS.gene80717.t1 | AT1G09430 | 81.862 | 419 | 76 | 0 | 1 | 419 | 1 | 419 | 0.0 | 736 |
Find 100 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTTTGTTACAGGTTTA+TGG | 0.135148 | 5.4:-23939964 | MS.gene80717:intron |
| GTGAAACCTGACATGTTATT+TGG | 0.166150 | 5.4:-23943348 | MS.gene80717:CDS |
| ATGGCTTTCTTCTTCTAAAT+TGG | 0.172223 | 5.4:-23943373 | MS.gene80717:CDS |
| TTTCCATCAACCAATGTAAA+AGG | 0.245174 | 5.4:+23942400 | None:intergenic |
| GCCACTGAGTCTTTCATTCA+TGG | 0.261851 | 5.4:-23942162 | MS.gene80717:CDS |
| TGGTTTGGTTGCCTTGAATT+TGG | 0.268556 | 5.4:-23943310 | MS.gene80717:CDS |
| TGAACCCAAAGGGCCGAATT+TGG | 0.281078 | 5.4:-23941280 | MS.gene80717:CDS |
| CGAATTTGGACAATGGTTGC+TGG | 0.300252 | 5.4:-23941266 | MS.gene80717:CDS |
| GAATCGATATTGAAGAGAAT+TGG | 0.314663 | 5.4:-23942964 | MS.gene80717:CDS |
| ATTGAAAATATAGGTTGAAA+TGG | 0.324243 | 5.4:-23943110 | MS.gene80717:intron |
| TTCAATTAGCTAACCTCAAT+CGG | 0.325607 | 5.4:+23940075 | None:intergenic |
| GATCCAGGAATCAAAGTTAA+AGG | 0.325987 | 5.4:-23940190 | MS.gene80717:intron |
| CGAGCACTTGGAGAGGAAAT+TGG | 0.328982 | 5.4:-23940102 | MS.gene80717:CDS |
| GGTTGCCTTGAATTTGGATT+TGG | 0.332415 | 5.4:-23943304 | MS.gene80717:CDS |
| TTGTCCAAATTCGGCCCTTT+GGG | 0.337602 | 5.4:+23941276 | None:intergenic |
| TTAATACAGGTAGGCGATCT+TGG | 0.342068 | 5.4:-23941124 | MS.gene80717:intron |
| ATTGTCCAAATTCGGCCCTT+TGG | 0.347305 | 5.4:+23941275 | None:intergenic |
| ATACCAGTCATTGTTGCTTC+AGG | 0.359407 | 5.4:+23939940 | None:intergenic |
| CTGCAAAACCTCCTCTTCAT+TGG | 0.362473 | 5.4:+23941057 | None:intergenic |
| TGATGGAAAGCCTTATCCTT+TGG | 0.370162 | 5.4:-23942386 | MS.gene80717:CDS |
| CAGCAACCATTGTCCAAATT+CGG | 0.373694 | 5.4:+23941267 | None:intergenic |
| CTTACTTGTGCAGACTTGAT+AGG | 0.377362 | 5.4:+23944225 | None:intergenic |
| GAGCACTTTAAGAGACTATC+TGG | 0.382341 | 5.4:-23944258 | MS.gene80717:CDS |
| ACTTGTTGCAACCCTTCCCT+TGG | 0.384681 | 5.4:-23942770 | MS.gene80717:CDS |
| CTTGGCTTTGCAAATGAGCT+TGG | 0.386907 | 5.4:-23941106 | MS.gene80717:CDS |
| TTGAAAATATAGGTTGAAAT+GGG | 0.391559 | 5.4:-23943109 | MS.gene80717:intron |
| AATCGATATTGAAGAGAATT+GGG | 0.403789 | 5.4:-23942963 | MS.gene80717:CDS |
| CTTTCACAAATGAAGCAACT+TGG | 0.406529 | 5.4:+23943280 | None:intergenic |
| AGGTAATACTCTTCATTATG+TGG | 0.426783 | 5.4:+23943040 | None:intergenic |
| ATTGAATTTCCATTGCCATT+TGG | 0.427635 | 5.4:-23942198 | MS.gene80717:CDS |
| TCAACAATGAAAGTTGTTAT+CGG | 0.431360 | 5.4:+23943073 | None:intergenic |
| TGAAACCTGACATGTTATTT+GGG | 0.440993 | 5.4:-23943347 | MS.gene80717:CDS |
| CGCTTCCCAAATAACATGTC+AGG | 0.451633 | 5.4:+23943342 | None:intergenic |
| ATAGATCAAGGGAGAAATTG+AGG | 0.459317 | 5.4:-23942626 | MS.gene80717:intron |
| CATTCATGGATTAGATGAAA+AGG | 0.460623 | 5.4:-23942148 | MS.gene80717:intron |
| TGTTGCAACCCTTCCCTTGG+AGG | 0.460679 | 5.4:-23942767 | MS.gene80717:intron |
| TGGCATAATTCGGGCACTAA+AGG | 0.461705 | 5.4:-23940301 | MS.gene80717:CDS |
| TGCAAAACCTCCTCTTCATT+GGG | 0.463887 | 5.4:+23941058 | None:intergenic |
| GAATTTGGACAATGGTTGCT+GGG | 0.465292 | 5.4:-23941265 | MS.gene80717:CDS |
| TTTGGGAAGCGTGGTAAAAG+TGG | 0.468444 | 5.4:-23943330 | MS.gene80717:CDS |
| TAAATTGAATTTACCTCCAA+GGG | 0.486977 | 5.4:+23942754 | None:intergenic |
| AATGACTGGTATATGCAAAC+AGG | 0.488870 | 5.4:-23939929 | MS.gene80717:CDS |
| AATTTCCATTGCCATTTGGA+AGG | 0.489649 | 5.4:-23942194 | MS.gene80717:CDS |
| CCTCTCATATCCAAAGGATA+AGG | 0.491900 | 5.4:+23942376 | None:intergenic |
| TGATTCTAAGAGATTGTTGA+AGG | 0.494704 | 5.4:-23944280 | MS.gene80717:CDS |
| ACTTACATCAATTACAACTC+TGG | 0.505750 | 5.4:+23941030 | None:intergenic |
| TTGGGCCAAATCCAAATTCA+AGG | 0.506250 | 5.4:+23943299 | None:intergenic |
| TTCACTGTGTTGAACCCAAA+GGG | 0.510313 | 5.4:-23941290 | MS.gene80717:CDS |
| GGAAATTGGCATCCCGATTG+AGG | 0.511227 | 5.4:-23940088 | MS.gene80717:intron |
| GTCTGTCAGAGACAATGTTA+AGG | 0.515654 | 5.4:+23943020 | None:intergenic |
| GGAAACTATGCAGAATATAG+TGG | 0.517156 | 5.4:-23941085 | MS.gene80717:CDS |
| GAAGCGTGGTAAAAGTGGTT+TGG | 0.519204 | 5.4:-23943325 | MS.gene80717:CDS |
| TCAATTAGCTAACCTCAATC+GGG | 0.519937 | 5.4:+23940076 | None:intergenic |
| TCTTCATTATGTGGGATGAA+AGG | 0.519980 | 5.4:+23943049 | None:intergenic |
| TTAAATTGAATTTACCTCCA+AGG | 0.523717 | 5.4:+23942753 | None:intergenic |
| TATTGAAGAGAATTGGGATA+AGG | 0.523886 | 5.4:-23942957 | MS.gene80717:intron |
| TTGAATTTACCTCCAAGGGA+AGG | 0.525190 | 5.4:+23942758 | None:intergenic |
| AGGGAAGGGTTGCAACAAGT+GGG | 0.528893 | 5.4:+23942773 | None:intergenic |
| GGTTGAAATGGGTGGATGCA+AGG | 0.529860 | 5.4:-23943098 | MS.gene80717:CDS |
| TTTCACAAATGAAGCAACTT+GGG | 0.530236 | 5.4:+23943281 | None:intergenic |
| GGTAATACTCTTCATTATGT+GGG | 0.530693 | 5.4:+23943041 | None:intergenic |
| AACATTGTCTCTGACAGACT+TGG | 0.532898 | 5.4:-23943016 | MS.gene80717:CDS |
| GAAAGAGCGTCTTGGTAAAG+AGG | 0.535308 | 5.4:-23943262 | MS.gene80717:intron |
| TGCACCTTTATGTGAGGCGA+GGG | 0.535874 | 5.4:-23940158 | MS.gene80717:CDS |
| TGAATTTACCTCCAAGGGAA+GGG | 0.537577 | 5.4:+23942759 | None:intergenic |
| GGACCTGAAGCAACAATGAC+TGG | 0.541528 | 5.4:-23939943 | MS.gene80717:CDS |
| AAGGGAAGGGTTGCAACAAG+TGG | 0.542096 | 5.4:+23942772 | None:intergenic |
| AGGGCTCTTGTTATAGGTGG+AGG | 0.545602 | 5.4:-23940360 | MS.gene80717:CDS |
| GCACTCATAACCCTTCCAAA+TGG | 0.556781 | 5.4:+23942183 | None:intergenic |
| ATTTCCATTGCCATTTGGAA+GGG | 0.562037 | 5.4:-23942193 | MS.gene80717:CDS |
| GTTGAAATGGGTGGATGCAA+GGG | 0.564098 | 5.4:-23943097 | MS.gene80717:CDS |
| TAGTGTCATCTACGCTGATA+CGG | 0.565668 | 5.4:-23941234 | MS.gene80717:intron |
| TCATTTGTGAAAGAGCGTCT+TGG | 0.569120 | 5.4:-23943270 | MS.gene80717:CDS |
| AGAAATTGAGGAATTTCTCA+AGG | 0.569980 | 5.4:-23942614 | MS.gene80717:CDS |
| ATAACCCTTCCAAATGGCAA+TGG | 0.584751 | 5.4:+23942189 | None:intergenic |
| AAAAGGGCTCTTGTTATAGG+TGG | 0.587346 | 5.4:-23940363 | MS.gene80717:CDS |
| AAAATATAGGTTGAAATGGG+TGG | 0.588383 | 5.4:-23943106 | MS.gene80717:intron |
| CCTTATCCTTTGGATATGAG+AGG | 0.593802 | 5.4:-23942376 | MS.gene80717:CDS |
| ACCTGAAATGGATAGTTAAG+CGG | 0.596270 | 5.4:+23939885 | None:intergenic |
| TGTGCAACTGCCGACCCCGA+TGG | 0.600634 | 5.4:-23940390 | MS.gene80717:CDS |
| AGCTCGCCTCTCATATCCAA+AGG | 0.606308 | 5.4:+23942370 | None:intergenic |
| GGGAAGGGTTGCAACAAGTG+GGG | 0.607919 | 5.4:+23942774 | None:intergenic |
| AATTCGGGCACTAAAGGAGA+AGG | 0.611871 | 5.4:-23940295 | MS.gene80717:intron |
| CACCTTTATGTGAGGCGAGG+GGG | 0.612540 | 5.4:-23940156 | MS.gene80717:CDS |
| AATTTGGACAATGGTTGCTG+GGG | 0.612808 | 5.4:-23941264 | MS.gene80717:CDS |
| TTTCACTGAGCTGCAAGACA+AGG | 0.614695 | 5.4:-23943400 | MS.gene80717:CDS |
| TAGTGGTGCACCCAATGAAG+AGG | 0.615153 | 5.4:-23941068 | MS.gene80717:CDS |
| ATGCACCTTTATGTGAGGCG+AGG | 0.615319 | 5.4:-23940159 | MS.gene80717:CDS |
| AGCTGCAAGACAAGGAACAA+TGG | 0.615951 | 5.4:-23943392 | MS.gene80717:CDS |
| AAAGGGCCGAATTTGGACAA+TGG | 0.617352 | 5.4:-23941273 | MS.gene80717:CDS |
| GATGTAAGAGACACTCCCGT+TGG | 0.624325 | 5.4:+23942808 | None:intergenic |
| ATTTGGACAATGGTTGCTGG+GGG | 0.626405 | 5.4:-23941263 | MS.gene80717:CDS |
| GACATGTTATTTGGGAAGCG+TGG | 0.630841 | 5.4:-23943339 | MS.gene80717:CDS |
| TGGTGCACCCAATGAAGAGG+AGG | 0.642713 | 5.4:-23941065 | MS.gene80717:CDS |
| CAAGAATGCACCTTTATGTG+AGG | 0.651491 | 5.4:-23940164 | MS.gene80717:CDS |
| CTTTAAGAGACTATCTGGCA+AGG | 0.654357 | 5.4:-23944253 | MS.gene80717:CDS |
| ATTCACTGTGTTGAACCCAA+AGG | 0.654553 | 5.4:-23941291 | MS.gene80717:CDS |
| GCACCTTTATGTGAGGCGAG+GGG | 0.663860 | 5.4:-23940157 | MS.gene80717:CDS |
| TTGCAGCTCAGTGAAATCAG+TGG | 0.670844 | 5.4:+23943407 | None:intergenic |
| TCCATGAATGAAAGACTCAG+TGG | 0.707219 | 5.4:+23942161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATCTTTAAATTGAT+AGG | + | chr5.4:23943232-23943251 | None:intergenic | 10.0% |
| !! | TCAATTTAAAGATTTAATTA+TGG | - | chr5.4:23943233-23943252 | MS.gene80717:intron | 10.0% |
| !! | AAATATTAATTAATACAGGT+AGG | - | chr5.4:23943073-23943092 | MS.gene80717:CDS | 15.0% |
| !! | TGCTAAATATTAATTAATAC+AGG | - | chr5.4:23943069-23943088 | MS.gene80717:CDS | 15.0% |
| !! | TTGAATAAAATTGTACATTT+AGG | + | chr5.4:23942103-23942122 | None:intergenic | 15.0% |
| !!! | TCTATTTCTTAAATTATTAC+TGG | - | chr5.4:23942769-23942788 | MS.gene80717:CDS | 15.0% |
| !!! | TTTATTTTGAACTTATCTTA+TGG | + | chr5.4:23940639-23940658 | None:intergenic | 15.0% |
| !!! | TTTTGTGATAAATTTTTAAG+TGG | - | chr5.4:23940104-23940123 | MS.gene80717:CDS | 15.0% |
| !! | AAAATATATCAATGGTTGAA+AGG | + | chr5.4:23941064-23941083 | None:intergenic | 20.0% |
| !! | AAATATATCAATGGTTGAAA+GGG | + | chr5.4:23941063-23941082 | None:intergenic | 20.0% |
| !! | AAATTGGTCCAATAAATTAT+TGG | + | chr5.4:23943501-23943520 | None:intergenic | 20.0% |
| !! | AAGGTAAACTAATATAACTT+TGG | - | chr5.4:23942077-23942096 | MS.gene80717:intron | 20.0% |
| !! | AATCTTAAAAGAAAACAGTA+CGG | + | chr5.4:23941722-23941741 | None:intergenic | 20.0% |
| !! | ACAAAAAATATGTACTTAAC+AGG | + | chr5.4:23942165-23942184 | None:intergenic | 20.0% |
| !! | ATAAGCTGAAAAATATCTTA+TGG | - | chr5.4:23940543-23940562 | MS.gene80717:intron | 20.0% |
| !! | GTGTTATAAGTTAGTTAATT+TGG | + | chr5.4:23943549-23943568 | None:intergenic | 20.0% |
| !! | TAAGCTGAAAAATATCTTAT+GGG | - | chr5.4:23940544-23940563 | MS.gene80717:intron | 20.0% |
| !! | TTGTTCAATACTGTAAATAA+AGG | + | chr5.4:23944164-23944183 | None:intergenic | 20.0% |
| !! | TTGTTCGTAAAATAACAAAT+TGG | + | chr5.4:23941482-23941501 | None:intergenic | 20.0% |
| !!! | AATGTTATGTGTTATTTTGA+AGG | - | chr5.4:23941909-23941928 | MS.gene80717:intron | 20.0% |
| !!! | AGCAGTTTATTAATTCTTTT+TGG | - | chr5.4:23944219-23944238 | MS.gene80717:intron | 20.0% |
| !!! | ATATCACTTTTACTTAAAGT+AGG | - | chr5.4:23940370-23940389 | MS.gene80717:CDS | 20.0% |
| !!! | ATCTTTTGCCAATAATTTAT+TGG | - | chr5.4:23943490-23943509 | MS.gene80717:intron | 20.0% |
| !!! | ATTGAAAATATAGGTTGAAA+TGG | - | chr5.4:23941096-23941115 | MS.gene80717:CDS | 20.0% |
| !!! | GTTTTTTTAACTTCTTACTT+GGG | - | chr5.4:23942183-23942202 | MS.gene80717:CDS | 20.0% |
| !!! | TGTTTTTTTAACTTCTTACT+TGG | - | chr5.4:23942182-23942201 | MS.gene80717:CDS | 20.0% |
| !!! | TTCACGACAATTTTTTTAAA+TGG | + | chr5.4:23940247-23940266 | None:intergenic | 20.0% |
| !!! | TTGAAAATATAGGTTGAAAT+GGG | - | chr5.4:23941097-23941116 | MS.gene80717:CDS | 20.0% |
| !!! | TTGTAATTTTGGTTAATTCA+GGG | - | chr5.4:23943621-23943640 | MS.gene80717:intron | 20.0% |
| !!! | TTTCATTGTCTTCATTTTAT+GGG | + | chr5.4:23942364-23942383 | None:intergenic | 20.0% |
| !!! | TTTGTAATTTTGGTTAATTC+AGG | - | chr5.4:23943620-23943639 | MS.gene80717:intron | 20.0% |
| !!! | TTTTTTTAACTTCTTACTTG+GGG | - | chr5.4:23942184-23942203 | MS.gene80717:CDS | 20.0% |
| ! | AATCGATATTGAAGAGAATT+GGG | - | chr5.4:23941243-23941262 | MS.gene80717:CDS | 25.0% |
| ! | AATGTAAGACAATGAATGTA+AGG | + | chr5.4:23941008-23941027 | None:intergenic | 25.0% |
| ! | ACAGAGAATGAAATGATAAT+CGG | - | chr5.4:23942439-23942458 | MS.gene80717:intron | 25.0% |
| ! | ACGTGACTAAAATATATCAA+TGG | + | chr5.4:23941072-23941091 | None:intergenic | 25.0% |
| ! | ATATCTTTGTTACAGGTTTA+TGG | - | chr5.4:23944242-23944261 | MS.gene80717:CDS | 25.0% |
| ! | ATTATCCATAACCTTCAAAT+TGG | - | chr5.4:23941341-23941360 | MS.gene80717:intron | 25.0% |
| ! | CACGTGTTTATTGAAAATAT+AGG | - | chr5.4:23941087-23941106 | MS.gene80717:CDS | 25.0% |
| ! | GACATAATTAACCACATATT+TGG | + | chr5.4:23940140-23940159 | None:intergenic | 25.0% |
| ! | TAAATTGAATTTACCTCCAA+GGG | + | chr5.4:23941455-23941474 | None:intergenic | 25.0% |
| ! | TAATAGGAAAAATTGTGTTG+AGG | - | chr5.4:23944196-23944215 | MS.gene80717:intron | 25.0% |
| ! | TCAACAATGAAAGTTGTTAT+CGG | + | chr5.4:23941136-23941155 | None:intergenic | 25.0% |
| ! | TCATCAATAAGTCATTGATA+CGG | + | chr5.4:23942804-23942823 | None:intergenic | 25.0% |
| ! | TCTTGTTAGTTCATACTAAT+GGG | - | chr5.4:23941934-23941953 | MS.gene80717:intron | 25.0% |
| ! | TTAAATTGAATTTACCTCCA+AGG | + | chr5.4:23941456-23941475 | None:intergenic | 25.0% |
| ! | TTCACAAATTATGAAACTGA+TGG | - | chr5.4:23942336-23942355 | MS.gene80717:intron | 25.0% |
| !! | AATAGAGTAAACACTCATTT+TGG | + | chr5.4:23943679-23943698 | None:intergenic | 25.0% |
| !! | GTAGGAGTAAACAATAATTT+TGG | - | chr5.4:23943391-23943410 | MS.gene80717:CDS | 25.0% |
| !! | GTGTAATTTAAAATGTTGCA+AGG | - | chr5.4:23942246-23942265 | MS.gene80717:intron | 25.0% |
| !! | GTTTCATTGTCTTCATTTTA+TGG | + | chr5.4:23942365-23942384 | None:intergenic | 25.0% |
| !! | TAAGAGAAAATTTTATGTGC+AGG | + | chr5.4:23941322-23941341 | None:intergenic | 25.0% |
| !! | TACAGTATTGAACAATCAAA+TGG | - | chr5.4:23944169-23944188 | MS.gene80717:intron | 25.0% |
| !! | TGATGTCTCTAAAAAACTAT+AGG | - | chr5.4:23943283-23943302 | MS.gene80717:CDS | 25.0% |
| !! | TTTTACGAACAAACTAACTT+TGG | - | chr5.4:23941490-23941509 | MS.gene80717:intron | 25.0% |
| !! | TTTTTGGATATCTTTGTTAC+AGG | - | chr5.4:23944235-23944254 | MS.gene80717:CDS | 25.0% |
| !!! | CTTGAGTATTGAATTTGTTT+TGG | - | chr5.4:23940753-23940772 | MS.gene80717:intron | 25.0% |
| !!! | GCTTATTGATTTCTGAAAAA+TGG | + | chr5.4:23940691-23940710 | None:intergenic | 25.0% |
| !!! | TAAGACTGTTTTTATTCCAA+CGG | - | chr5.4:23941382-23941401 | MS.gene80717:intron | 25.0% |
| !!! | TTTTTTAACTTCTTACTTGG+GGG | - | chr5.4:23942185-23942204 | MS.gene80717:CDS | 25.0% |
| AAGTAAAACTCTACTGTTGT+GGG | + | chr5.4:23943941-23943960 | None:intergenic | 30.0% | |
| ACAATCAAATGGTGCTTAAT+AGG | - | chr5.4:23944180-23944199 | MS.gene80717:intron | 30.0% | |
| ACAATGAATGTAAGGTTTGA+AGG | + | chr5.4:23941000-23941019 | None:intergenic | 30.0% | |
| ACTTACATCAATTACAACTC+TGG | + | chr5.4:23943179-23943198 | None:intergenic | 30.0% | |
| AGAAATTGAGGAATTTCTCA+AGG | - | chr5.4:23941592-23941611 | MS.gene80717:intron | 30.0% | |
| AGCATATTAAGCACAATGTA+TGG | + | chr5.4:23940598-23940617 | None:intergenic | 30.0% | |
| AGGTAATACTCTTCATTATG+TGG | + | chr5.4:23941169-23941188 | None:intergenic | 30.0% | |
| ATATGACCAAACCAATTTGA+AGG | + | chr5.4:23941355-23941374 | None:intergenic | 30.0% | |
| ATATTAAGCACAATGTATGG+AGG | + | chr5.4:23940595-23940614 | None:intergenic | 30.0% | |
| ATGGCTTTCTTCTTCTAAAT+TGG | - | chr5.4:23940833-23940852 | MS.gene80717:intron | 30.0% | |
| ATTATGTCCGATTTATGGTT+AGG | - | chr5.4:23940152-23940171 | MS.gene80717:CDS | 30.0% | |
| ATTGAATGCAACTACATGTT+TGG | + | chr5.4:23942745-23942764 | None:intergenic | 30.0% | |
| ATTGAATTTCCATTGCCATT+TGG | - | chr5.4:23942008-23942027 | MS.gene80717:intron | 30.0% | |
| ATTGGCAAAAGATATACTCA+AGG | + | chr5.4:23943483-23943502 | None:intergenic | 30.0% | |
| CGTGTATGCAAGTTTAATAA+AGG | - | chr5.4:23940664-23940683 | MS.gene80717:intron | 30.0% | |
| GAATCGATATTGAAGAGAAT+TGG | - | chr5.4:23941242-23941261 | MS.gene80717:CDS | 30.0% | |
| GATATCACTTGACATATTCA+AGG | - | chr5.4:23943652-23943671 | MS.gene80717:intron | 30.0% | |
| GGTAATACTCTTCATTATGT+GGG | + | chr5.4:23941168-23941187 | None:intergenic | 30.0% | |
| GGTTAATTATGTCCGATTTA+TGG | - | chr5.4:23940147-23940166 | MS.gene80717:CDS | 30.0% | |
| GTAGAAAGAACACAATTGAT+TGG | - | chr5.4:23940285-23940304 | MS.gene80717:intron | 30.0% | |
| TAACATATCCTAGAAGAAAG+TGG | + | chr5.4:23942638-23942657 | None:intergenic | 30.0% | |
| TAAGTAAAACTCTACTGTTG+TGG | + | chr5.4:23943942-23943961 | None:intergenic | 30.0% | |
| TACTACAATGGACATATTCA+AGG | - | chr5.4:23943585-23943604 | MS.gene80717:intron | 30.0% | |
| TATCTTCCCTAACCATAAAT+CGG | + | chr5.4:23940162-23940181 | None:intergenic | 30.0% | |
| TATTGAAGAGAATTGGGATA+AGG | - | chr5.4:23941249-23941268 | MS.gene80717:CDS | 30.0% | |
| TATTGGACCAATTTGACTAA+TGG | - | chr5.4:23943507-23943526 | MS.gene80717:intron | 30.0% | |
| TTATGTCCGATTTATGGTTA+GGG | - | chr5.4:23940153-23940172 | MS.gene80717:CDS | 30.0% | |
| TTCAATTAGCTAACCTCAAT+CGG | + | chr5.4:23944134-23944153 | None:intergenic | 30.0% | |
| TTGAATATGTCCATTGTAGT+AGG | + | chr5.4:23943586-23943605 | None:intergenic | 30.0% | |
| TTGAATGCAACTACATGTTT+GGG | + | chr5.4:23942744-23942763 | None:intergenic | 30.0% | |
| TTGGCAAAAGATATACTCAA+GGG | + | chr5.4:23943482-23943501 | None:intergenic | 30.0% | |
| TTTCAAGAACTTCAAGAAGT+AGG | - | chr5.4:23941874-23941893 | MS.gene80717:intron | 30.0% | |
| TTTCACAAATGAAGCAACTT+GGG | + | chr5.4:23940928-23940947 | None:intergenic | 30.0% | |
| TTTCCATCAACCAATGTAAA+AGG | + | chr5.4:23941809-23941828 | None:intergenic | 30.0% | |
| ! | AAAATATAGGTTGAAATGGG+TGG | - | chr5.4:23941100-23941119 | MS.gene80717:CDS | 30.0% |
| ! | AAGATGAAAAGTATGTGTTG+TGG | + | chr5.4:23941277-23941296 | None:intergenic | 30.0% |
| ! | AGAGATGAATCCTTTTACAT+TGG | - | chr5.4:23941796-23941815 | MS.gene80717:intron | 30.0% |
| ! | GTCTTGTTAGTTCATACTAA+TGG | - | chr5.4:23941933-23941952 | MS.gene80717:intron | 30.0% |
| ! | TGAAACCTGACATGTTATTT+GGG | - | chr5.4:23940859-23940878 | MS.gene80717:intron | 30.0% |
| ! | TGATTCTAAGAGATTGTTGA+AGG | - | chr5.4:23939926-23939945 | MS.gene80717:CDS | 30.0% |
| ! | TTGTTGTTGTTGTATTCTGT+AGG | - | chr5.4:23943373-23943392 | MS.gene80717:CDS | 30.0% |
| ! | TTTTATGTGCAGGAAATAGA+TGG | + | chr5.4:23941312-23941331 | None:intergenic | 30.0% |
| !! | AATCCTTTTACATTGGTTGA+TGG | - | chr5.4:23941803-23941822 | MS.gene80717:intron | 30.0% |
| !! | AATTGGTTTGGTCATATTTC+AGG | - | chr5.4:23941358-23941377 | MS.gene80717:intron | 30.0% |
| !! | ACTTTCTTCTAGGATATGTT+AGG | - | chr5.4:23942637-23942656 | MS.gene80717:intron | 30.0% |
| !! | AGTTTGTTAGCAAATGTGTT+AGG | + | chr5.4:23942506-23942525 | None:intergenic | 30.0% |
| !! | CATTCATGGATTAGATGAAA+AGG | - | chr5.4:23942058-23942077 | MS.gene80717:intron | 30.0% |
| !! | GAAGTATTGTTGTTTCTGAT+AGG | + | chr5.4:23942666-23942685 | None:intergenic | 30.0% |
| !! | GTGATTTTCACTCTTTTTCA+AGG | - | chr5.4:23941614-23941633 | MS.gene80717:intron | 30.0% |
| !!! | AAGACTGTTTTTATTCCAAC+GGG | - | chr5.4:23941383-23941402 | MS.gene80717:intron | 30.0% |
| !!! | GCACTGTTTTTATAGATCAA+GGG | - | chr5.4:23941569-23941588 | MS.gene80717:intron | 30.0% |
| !!! | TCAAGGGTGTTTATGTATTT+TGG | + | chr5.4:23943466-23943485 | None:intergenic | 30.0% |
| !!! | TGCACTGTTTTTATAGATCA+AGG | - | chr5.4:23941568-23941587 | MS.gene80717:intron | 30.0% |
| !!! | TTGTTTTGGTTTGTGCTTTA+AGG | - | chr5.4:23940767-23940786 | MS.gene80717:intron | 30.0% |
| AACTGAACTCTCTGAATTCT+AGG | - | chr5.4:23942576-23942595 | MS.gene80717:intron | 35.0% | |
| AATGACTGGTATATGCAAAC+AGG | - | chr5.4:23944277-23944296 | MS.gene80717:CDS | 35.0% | |
| AATGTATATTAACACGCCAC+TGG | - | chr5.4:23941652-23941671 | MS.gene80717:intron | 35.0% | |
| AATTACACCAGATTCCTCTA+AGG | + | chr5.4:23942234-23942253 | None:intergenic | 35.0% | |
| AATTCAGAGAGTTCAGTTAC+AGG | + | chr5.4:23942574-23942593 | None:intergenic | 35.0% | |
| ACTAATGGAAGACACATTCA+AGG | - | chr5.4:23943522-23943541 | MS.gene80717:intron | 35.0% | |
| ACTGAACTCTCTGAATTCTA+GGG | - | chr5.4:23942577-23942596 | MS.gene80717:intron | 35.0% | |
| ATAGATCAAGGGAGAAATTG+AGG | - | chr5.4:23941580-23941599 | MS.gene80717:intron | 35.0% | |
| ATGTATATTAACACGCCACT+GGG | - | chr5.4:23941653-23941672 | MS.gene80717:intron | 35.0% | |
| ATTACACCAGATTCCTCTAA+GGG | + | chr5.4:23942233-23942252 | None:intergenic | 35.0% | |
| CCAAACCAATTTGAAGGTTA+TGG | + | chr5.4:23941349-23941368 | None:intergenic | 35.0% | |
| CCATAACCTTCAAATTGGTT+TGG | - | chr5.4:23941346-23941365 | MS.gene80717:intron | 35.0% | |
| CCATATGAGAGAAAATGAGT+TGG | + | chr5.4:23942613-23942632 | None:intergenic | 35.0% | |
| CTTTCACAAATGAAGCAACT+TGG | + | chr5.4:23940929-23940948 | None:intergenic | 35.0% | |
| GATCCAGGAATCAAAGTTAA+AGG | - | chr5.4:23944016-23944035 | MS.gene80717:intron | 35.0% | |
| GGAAACTATGCAGAATATAG+TGG | - | chr5.4:23943121-23943140 | MS.gene80717:intron | 35.0% | |
| GTGAAACCTGACATGTTATT+TGG | - | chr5.4:23940858-23940877 | MS.gene80717:intron | 35.0% | |
| GTGTCTTCCATTAGTCAAAT+TGG | + | chr5.4:23943517-23943536 | None:intergenic | 35.0% | |
| TATGTCCATTGTAGTAGGTT+TGG | + | chr5.4:23943581-23943600 | None:intergenic | 35.0% | |
| TCAATTAGCTAACCTCAATC+GGG | + | chr5.4:23944133-23944152 | None:intergenic | 35.0% | |
| TCTTCATTATGTGGGATGAA+AGG | + | chr5.4:23941160-23941179 | None:intergenic | 35.0% | |
| TGAATGTAAGGTTTGAAGGA+CGG | + | chr5.4:23940996-23941015 | None:intergenic | 35.0% | |
| ! | AATTTCCATTGCCATTTGGA+AGG | - | chr5.4:23942012-23942031 | MS.gene80717:intron | 35.0% |
| ! | AGCATAAGCTTTTCAGAATG+TGG | - | chr5.4:23941217-23941236 | MS.gene80717:intron | 35.0% |
| ! | ATAAGCTTTTCAGAATGTGG+AGG | - | chr5.4:23941220-23941239 | MS.gene80717:intron | 35.0% |
| ! | ATTTCCATTGCCATTTGGAA+GGG | - | chr5.4:23942013-23942032 | MS.gene80717:intron | 35.0% |
| ! | CAAAAAAGGGCTCTTGTTAT+AGG | - | chr5.4:23943840-23943859 | MS.gene80717:intron | 35.0% |
| ! | CCAACTCATTTTCTCTCATA+TGG | - | chr5.4:23942610-23942629 | MS.gene80717:CDS | 35.0% |
| ! | CTTTTGAACTATTGTGATCC+AGG | - | chr5.4:23944001-23944020 | MS.gene80717:intron | 35.0% |
| ! | TAGGTATTCTGAGAACACTA+TGG | - | chr5.4:23943302-23943321 | MS.gene80717:CDS | 35.0% |
| !! | CTTTACTTTTCTGTCAGATC+TGG | - | chr5.4:23941760-23941779 | MS.gene80717:intron | 35.0% |
| !! | TGGTTTGTGCTTTAAGGTTA+CGG | - | chr5.4:23940773-23940792 | MS.gene80717:intron | 35.0% |
| !!! | CTATAACAAGAGCCCTTTTT+TGG | + | chr5.4:23943842-23943861 | None:intergenic | 35.0% |
| !!! | GCATTTTTTCTAGACCCTTT+TGG | + | chr5.4:23944085-23944104 | None:intergenic | 35.0% |
| AACATTGTCTCTGACAGACT+TGG | - | chr5.4:23941190-23941209 | MS.gene80717:intron | 40.0% | |
| AATTTGGACAATGGTTGCTG+GGG | - | chr5.4:23942942-23942961 | MS.gene80717:intron | 40.0% | |
| ATAACCCTTCCAAATGGCAA+TGG | + | chr5.4:23942020-23942039 | None:intergenic | 40.0% | |
| ATATGGCTCCACTTTCTTCT+AGG | - | chr5.4:23942627-23942646 | MS.gene80717:intron | 40.0% | |
| ATGAACAGACGTTGTCGTAT+TGG | - | chr5.4:23941969-23941988 | MS.gene80717:intron | 40.0% | |
| ATTCACTGTGTTGAACCCAA+AGG | - | chr5.4:23942915-23942934 | MS.gene80717:intron | 40.0% | |
| CAAGAATGCACCTTTATGTG+AGG | - | chr5.4:23944042-23944061 | MS.gene80717:intron | 40.0% | |
| CAGCAACCATTGTCCAAATT+CGG | + | chr5.4:23942942-23942961 | None:intergenic | 40.0% | |
| CCTCTCATATCCAAAGGATA+AGG | + | chr5.4:23941833-23941852 | None:intergenic | 40.0% | |
| CCTTATCCTTTGGATATGAG+AGG | - | chr5.4:23941830-23941849 | MS.gene80717:intron | 40.0% | |
| CTAGAAAAAATGCGAGCACT+TGG | - | chr5.4:23944092-23944111 | MS.gene80717:intron | 40.0% | |
| CTTACTTGTGCAGACTTGAT+AGG | + | chr5.4:23939984-23940003 | None:intergenic | 40.0% | |
| GAATTTGGACAATGGTTGCT+GGG | - | chr5.4:23942941-23942960 | MS.gene80717:intron | 40.0% | |
| GGTTGCCTTGAATTTGGATT+TGG | - | chr5.4:23940902-23940921 | MS.gene80717:intron | 40.0% | |
| GTCACTTCATGCTGCAAATA+TGG | + | chr5.4:23943041-23943060 | None:intergenic | 40.0% | |
| GTCTGTCAGAGACAATGTTA+AGG | + | chr5.4:23941189-23941208 | None:intergenic | 40.0% | |
| GTTACAGGTTCGCTATATGA+AGG | + | chr5.4:23942559-23942578 | None:intergenic | 40.0% | |
| GTTAGTGCAGTCCAAATATG+TGG | - | chr5.4:23940126-23940145 | MS.gene80717:CDS | 40.0% | |
| TAGTGTCATCTACGCTGATA+CGG | - | chr5.4:23942972-23942991 | MS.gene80717:CDS | 40.0% | |
| TATGGCATAAGCACTTGCAA+AGG | + | chr5.4:23940621-23940640 | None:intergenic | 40.0% | |
| TCCATGAATGAAAGACTCAG+TGG | + | chr5.4:23942048-23942067 | None:intergenic | 40.0% | |
| TGAATTTACCTCCAAGGGAA+GGG | + | chr5.4:23941450-23941469 | None:intergenic | 40.0% | |
| TGCAAAACCTCCTCTTCATT+GGG | + | chr5.4:23943151-23943170 | None:intergenic | 40.0% | |
| TTAATACAGGTAGGCGATCT+TGG | - | chr5.4:23943082-23943101 | MS.gene80717:CDS | 40.0% | |
| TTACACCAGATTCCTCTAAG+GGG | + | chr5.4:23942232-23942251 | None:intergenic | 40.0% | |
| TTCACTGTGTTGAACCCAAA+GGG | - | chr5.4:23942916-23942935 | MS.gene80717:intron | 40.0% | |
| TTGAATTTACCTCCAAGGGA+AGG | + | chr5.4:23941451-23941470 | None:intergenic | 40.0% | |
| TTGGGCCAAATCCAAATTCA+AGG | + | chr5.4:23940910-23940929 | None:intergenic | 40.0% | |
| ! | AAAAGGGCTCTTGTTATAGG+TGG | - | chr5.4:23943843-23943862 | MS.gene80717:intron | 40.0% |
| ! | ATACCAGTCATTGTTGCTTC+AGG | + | chr5.4:23944269-23944288 | None:intergenic | 40.0% |
| ! | CTGCCTTTAACTTTGATTCC+TGG | + | chr5.4:23944022-23944041 | None:intergenic | 40.0% |
| ! | CTGTTTTGCTACCATTGTAG+AGG | + | chr5.4:23942423-23942442 | None:intergenic | 40.0% |
| ! | CTTTAAGAGACTATCTGGCA+AGG | - | chr5.4:23939953-23939972 | MS.gene80717:intron | 40.0% |
| ! | GAGCACTTTAAGAGACTATC+TGG | - | chr5.4:23939948-23939967 | MS.gene80717:CDS | 40.0% |
| ! | GAGTAACAAGAGCCCTTTTT+CGG | + | chr5.4:23943758-23943777 | None:intergenic | 40.0% |
| ! | TATGGTGCTAACGTGAACAA+CGG | - | chr5.4:23943251-23943270 | MS.gene80717:intron | 40.0% |
| ! | TGATGGAAAGCCTTATCCTT+TGG | - | chr5.4:23941820-23941839 | MS.gene80717:intron | 40.0% |
| !! | TCATTTGTGAAAGAGCGTCT+TGG | - | chr5.4:23940936-23940955 | MS.gene80717:intron | 40.0% |
| !! | TCTAGACCCTTTTGGTAGTT+CGG | + | chr5.4:23944077-23944096 | None:intergenic | 40.0% |
| !! | TGGTTTGGTTGCCTTGAATT+TGG | - | chr5.4:23940896-23940915 | MS.gene80717:intron | 40.0% |
| AAAAATGCGAGCACTTGGAG+AGG | - | chr5.4:23944097-23944116 | MS.gene80717:intron | 45.0% | |
| AAAGGGCCGAATTTGGACAA+TGG | - | chr5.4:23942933-23942952 | MS.gene80717:intron | 45.0% | |
| AATTCGGGCACTAAAGGAGA+AGG | - | chr5.4:23943911-23943930 | MS.gene80717:intron | 45.0% | |
| ACACCTGCTTCACGCATTTA+GGG | + | chr5.4:23943418-23943437 | None:intergenic | 45.0% | |
| AGCTGCAAGACAAGGAACAA+TGG | - | chr5.4:23940814-23940833 | MS.gene80717:intron | 45.0% | |
| ATGCACGCTACAGTGAATCA+AGG | + | chr5.4:23940727-23940746 | None:intergenic | 45.0% | |
| ATTGTCCAAATTCGGCCCTT+TGG | + | chr5.4:23942934-23942953 | None:intergenic | 45.0% | |
| ATTTGGACAATGGTTGCTGG+GGG | - | chr5.4:23942943-23942962 | MS.gene80717:intron | 45.0% | |
| CGAATTTGGACAATGGTTGC+TGG | - | chr5.4:23942940-23942959 | MS.gene80717:intron | 45.0% | |
| CGCTTCCCAAATAACATGTC+AGG | + | chr5.4:23940867-23940886 | None:intergenic | 45.0% | |
| CTGCAAAACCTCCTCTTCAT+TGG | + | chr5.4:23943152-23943171 | None:intergenic | 45.0% | |
| GAAGCGTGGTAAAAGTGGTT+TGG | - | chr5.4:23940881-23940900 | MS.gene80717:intron | 45.0% | |
| GAGAGCCAAACCTACTACAA+TGG | - | chr5.4:23943573-23943592 | MS.gene80717:intron | 45.0% | |
| GCACTCATAACCCTTCCAAA+TGG | + | chr5.4:23942026-23942045 | None:intergenic | 45.0% | |
| GCCACTGAGTCTTTCATTCA+TGG | - | chr5.4:23942044-23942063 | MS.gene80717:intron | 45.0% | |
| GTTAGGAGAGAATGTCTCTC+TGG | + | chr5.4:23942489-23942508 | None:intergenic | 45.0% | |
| GTTGAAATGGGTGGATGCAA+GGG | - | chr5.4:23941109-23941128 | MS.gene80717:CDS | 45.0% | |
| TGGCATAATTCGGGCACTAA+AGG | - | chr5.4:23943905-23943924 | MS.gene80717:intron | 45.0% | |
| TGTAAGGTTTGAAGGACGGA+CGG | + | chr5.4:23940992-23941011 | None:intergenic | 45.0% | |
| TTGCAGCTCAGTGAAATCAG+TGG | + | chr5.4:23940802-23940821 | None:intergenic | 45.0% | |
| TTGTCCAAATTCGGCCCTTT+GGG | + | chr5.4:23942933-23942952 | None:intergenic | 45.0% | |
| TTTCACTGAGCTGCAAGACA+AGG | - | chr5.4:23940806-23940825 | MS.gene80717:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5.4:23943351-23943370 | None:intergenic | 45.0% |
| ! | ATGGTGCTAACGTGAACAAC+GGG | - | chr5.4:23943252-23943271 | MS.gene80717:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5.4:23943352-23943371 | None:intergenic | 45.0% |
| ! | GACATGTTATTTGGGAAGCG+TGG | - | chr5.4:23940867-23940886 | MS.gene80717:intron | 45.0% |
| ! | TTTGGGAAGCGTGGTAAAAG+TGG | - | chr5.4:23940876-23940895 | MS.gene80717:intron | 45.0% |
| !! | CTTGGCTTTGCAAATGAGCT+TGG | - | chr5.4:23943100-23943119 | MS.gene80717:CDS | 45.0% |
| !! | GAAAGAGCGTCTTGGTAAAG+AGG | - | chr5.4:23940944-23940963 | MS.gene80717:intron | 45.0% |
| !! | TTGTCGTATTGGTTGCAGGT+GGG | - | chr5.4:23941980-23941999 | MS.gene80717:intron | 45.0% |
| !!! | AAGAGCCCTTTTTTGGCCAT+CGG | + | chr5.4:23943835-23943854 | None:intergenic | 45.0% |
| !!! | AGGTGTGCTTTTTCCTACTC+TGG | - | chr5.4:23940964-23940983 | MS.gene80717:intron | 45.0% |
| !!! | TTTTTTTTTTTTTGTAATTT+TGG | - | chr5.4:23943610-23943629 | MS.gene80717:intron | 5.0% |
| AAGGGAAGGGTTGCAACAAG+TGG | + | chr5.4:23941437-23941456 | None:intergenic | 50.0% | |
| AGCTCGCCTCTCATATCCAA+AGG | + | chr5.4:23941839-23941858 | None:intergenic | 50.0% | |
| AGGGAAGGGTTGCAACAAGT+GGG | + | chr5.4:23941436-23941455 | None:intergenic | 50.0% | |
| ATGCACCTTTATGTGAGGCG+AGG | - | chr5.4:23944047-23944066 | MS.gene80717:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr5.4:23943350-23943369 | MS.gene80717:CDS | 50.0% | |
| CGAGCACTTGGAGAGGAAAT+TGG | - | chr5.4:23944104-23944123 | MS.gene80717:intron | 50.0% | |
| CGAGCGTACAACCTCTACAA+TGG | - | chr5.4:23942409-23942428 | MS.gene80717:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.4:23943347-23943366 | None:intergenic | 50.0% | |
| GACACCTGCTTCACGCATTT+AGG | + | chr5.4:23943419-23943438 | None:intergenic | 50.0% | |
| GATGTAAGAGACACTCCCGT+TGG | + | chr5.4:23941401-23941420 | None:intergenic | 50.0% | |
| GATTGCACAAGTACACCCAG+TGG | + | chr5.4:23941671-23941690 | None:intergenic | 50.0% | |
| GGAAATTGGCATCCCGATTG+AGG | - | chr5.4:23944118-23944137 | MS.gene80717:intron | 50.0% | |
| GGACCTGAAGCAACAATGAC+TGG | - | chr5.4:23944263-23944282 | MS.gene80717:CDS | 50.0% | |
| GGAGAGAATGTCTCTCTGGT+AGG | + | chr5.4:23942485-23942504 | None:intergenic | 50.0% | |
| GGTTGAAATGGGTGGATGCA+AGG | - | chr5.4:23941108-23941127 | MS.gene80717:CDS | 50.0% | |
| GTCATCTACGCTGATACGGT+GGG | - | chr5.4:23942976-23942995 | MS.gene80717:CDS | 50.0% | |
| GTTCGCTATATGAAGGAGCG+AGG | + | chr5.4:23942552-23942571 | None:intergenic | 50.0% | |
| TAGTGGTGCACCCAATGAAG+AGG | - | chr5.4:23943138-23943157 | MS.gene80717:intron | 50.0% | |
| TGAACCCAAAGGGCCGAATT+TGG | - | chr5.4:23942926-23942945 | MS.gene80717:intron | 50.0% | |
| TGACCCTGATGGCCGAAAAA+GGG | - | chr5.4:23943743-23943762 | MS.gene80717:intron | 50.0% | |
| TGCACCTTTATGTGAGGCGA+GGG | - | chr5.4:23944048-23944067 | MS.gene80717:intron | 50.0% | |
| TGTCATCTACGCTGATACGG+TGG | - | chr5.4:23942975-23942994 | MS.gene80717:CDS | 50.0% | |
| TGTCTGACACCGACACATGT+CGG | + | chr5.4:23942711-23942730 | None:intergenic | 50.0% | |
| ! | ACAGGCGCACACACATTTTC+TGG | + | chr5.4:23942147-23942166 | None:intergenic | 50.0% |
| ! | ACCAGATTCCTCTAAGGGGT+AGG | + | chr5.4:23942228-23942247 | None:intergenic | 50.0% |
| ! | ACTTGTTGCAACCCTTCCCT+TGG | - | chr5.4:23941436-23941455 | MS.gene80717:intron | 50.0% |
| ! | AGATTCCTCTAAGGGGTAGG+GGG | + | chr5.4:23942225-23942244 | None:intergenic | 50.0% |
| ! | AGGGCTCTTGTTATAGGTGG+AGG | - | chr5.4:23943846-23943865 | MS.gene80717:intron | 50.0% |
| ! | CAGATTCCTCTAAGGGGTAG+GGG | + | chr5.4:23942226-23942245 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr5.4:23943353-23943372 | None:intergenic | 50.0% |
| ! | CCAGATTCCTCTAAGGGGTA+GGG | + | chr5.4:23942227-23942246 | None:intergenic | 50.0% |
| ! | TCTGGTAGGAGCTTAGCTCT+GGG | + | chr5.4:23942471-23942490 | None:intergenic | 50.0% |
| !! | ACATGTGTCGGTGTCAGACA+CGG | - | chr5.4:23942711-23942730 | MS.gene80717:intron | 50.0% |
| !! | GACGTTGTCGTATTGGTTGC+AGG | - | chr5.4:23941976-23941995 | MS.gene80717:intron | 50.0% |
| !! | GTTGTCGTATTGGTTGCAGG+TGG | - | chr5.4:23941979-23941998 | MS.gene80717:intron | 50.0% |
| !! | TGTCGTATTGGTTGCAGGTG+GGG | - | chr5.4:23941981-23942000 | MS.gene80717:intron | 50.0% |
| !!! | AGAGCCCTTTTTTGGCCATC+GGG | + | chr5.4:23943834-23943853 | None:intergenic | 50.0% |
| ACCGACACATGTCGGACACT+AGG | + | chr5.4:23942703-23942722 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr5.4:23943339-23943358 | None:intergenic | 55.0% | |
| AGGGGGTCCGAACTACCAAA+AGG | - | chr5.4:23944067-23944086 | MS.gene80717:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.4:23943338-23943357 | MS.gene80717:CDS | 55.0% | |
| CACCTTTATGTGAGGCGAGG+GGG | - | chr5.4:23944050-23944069 | MS.gene80717:intron | 55.0% | |
| CCCTACCCCTTAGAGGAATC+TGG | - | chr5.4:23942224-23942243 | MS.gene80717:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5.4:23943345-23943364 | MS.gene80717:CDS | 55.0% | |
| CGACCCCGATGGCCAAAAAA+GGG | - | chr5.4:23943827-23943846 | MS.gene80717:intron | 55.0% | |
| CTCTGGTAGGAGCTTAGCTC+TGG | + | chr5.4:23942472-23942491 | None:intergenic | 55.0% | |
| CTGACCCTGATGGCCGAAAA+AGG | - | chr5.4:23943742-23943761 | MS.gene80717:intron | 55.0% | |
| GAATACCCCCTACCCCTTAG+AGG | - | chr5.4:23942217-23942236 | MS.gene80717:intron | 55.0% | |
| GCACCTTTATGTGAGGCGAG+GGG | - | chr5.4:23944049-23944068 | MS.gene80717:intron | 55.0% | |
| GCCTAGTGTCCGACATGTGT+CGG | - | chr5.4:23942699-23942718 | MS.gene80717:intron | 55.0% | |
| GGGAAGGGTTGCAACAAGTG+GGG | + | chr5.4:23941435-23941454 | None:intergenic | 55.0% | |
| GGGGGTCCGAACTACCAAAA+GGG | - | chr5.4:23944068-23944087 | MS.gene80717:intron | 55.0% | |
| GGTCCCTAAATGCGTGAAGC+AGG | - | chr5.4:23943412-23943431 | MS.gene80717:CDS | 55.0% | |
| TCAGGGTCAGCAGTTGCACA+TGG | + | chr5.4:23943732-23943751 | None:intergenic | 55.0% | |
| TGGTGCACCCAATGAAGAGG+AGG | - | chr5.4:23943141-23943160 | MS.gene80717:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.4:23943339-23943358 | MS.gene80717:CDS | 55.0% | |
| TGTGCAACTGCTGACCCTGA+TGG | - | chr5.4:23943732-23943751 | MS.gene80717:intron | 55.0% | |
| TGTTGCAACCCTTCCCTTGG+AGG | - | chr5.4:23941439-23941458 | MS.gene80717:intron | 55.0% | |
| !! | TAGGAGCTTAGCTCTGGGCA+GGG | + | chr5.4:23942466-23942485 | None:intergenic | 55.0% |
| !!! | AGAGCCCTTTTTCGGCCATC+AGG | + | chr5.4:23943750-23943769 | None:intergenic | 55.0% |
| !!! | CCTTTTTTGGCCATCGGGGT+CGG | + | chr5.4:23943829-23943848 | None:intergenic | 55.0% |
| !!! | GAGCCCTTTTTCGGCCATCA+GGG | + | chr5.4:23943749-23943768 | None:intergenic | 55.0% |
| !!! | GAGCCCTTTTTTGGCCATCG+GGG | + | chr5.4:23943833-23943852 | None:intergenic | 55.0% |
| CCGACCCCGATGGCCAAAAA+AGG | - | chr5.4:23943826-23943845 | MS.gene80717:intron | 60.0% | |
| GACCCCCTCGCCTCACATAA+AGG | + | chr5.4:23944055-23944074 | None:intergenic | 60.0% | |
| TGGACAATGGTTGCTGGGGG+AGG | - | chr5.4:23942946-23942965 | MS.gene80717:intron | 60.0% | |
| !! | AGGAGCTTAGCTCTGGGCAG+GGG | + | chr5.4:23942465-23942484 | None:intergenic | 60.0% |
| !! | GTAGGAGCTTAGCTCTGGGC+AGG | + | chr5.4:23942467-23942486 | None:intergenic | 60.0% |
| AGGACGGACGGAGCCAGAGT+AGG | + | chr5.4:23940980-23940999 | None:intergenic | 65.0% | |
| TGTGCAACTGCCGACCCCGA+TGG | - | chr5.4:23943816-23943835 | MS.gene80717:intron | 65.0% | |
| CGGGGTCGGCAGTTGCACAC+TGG | + | chr5.4:23943815-23943834 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 23939900 | 23944328 | 23939900 | ID=MS.gene80717 |
| chr5.4 | mRNA | 23939900 | 23944328 | 23939900 | ID=MS.gene80717.t1;Parent=MS.gene80717 |
| chr5.4 | exon | 23944230 | 23944328 | 23944230 | ID=MS.gene80717.t1.exon1;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23944230 | 23944328 | 23944230 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23943263 | 23943439 | 23943263 | ID=MS.gene80717.t1.exon2;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23943263 | 23943439 | 23943263 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23942958 | 23943119 | 23942958 | ID=MS.gene80717.t1.exon3;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23942958 | 23943119 | 23942958 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23942768 | 23942848 | 23942768 | ID=MS.gene80717.t1.exon4;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23942768 | 23942848 | 23942768 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23942593 | 23942644 | 23942593 | ID=MS.gene80717.t1.exon5;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23942593 | 23942644 | 23942593 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23942337 | 23942451 | 23942337 | ID=MS.gene80717.t1.exon6;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23942337 | 23942451 | 23942337 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23942149 | 23942230 | 23942149 | ID=MS.gene80717.t1.exon7;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23942149 | 23942230 | 23942149 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23941235 | 23941330 | 23941235 | ID=MS.gene80717.t1.exon8;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23941235 | 23941330 | 23941235 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23941036 | 23941137 | 23941036 | ID=MS.gene80717.t1.exon9;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23941036 | 23941137 | 23941036 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23940296 | 23940412 | 23940296 | ID=MS.gene80717.t1.exon10;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23940296 | 23940412 | 23940296 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23940089 | 23940205 | 23940089 | ID=MS.gene80717.t1.exon11;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23940089 | 23940205 | 23940089 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| chr5.4 | exon | 23939900 | 23939971 | 23939900 | ID=MS.gene80717.t1.exon12;Parent=MS.gene80717.t1 |
| chr5.4 | CDS | 23939900 | 23939971 | 23939900 | ID=cds.MS.gene80717.t1;Parent=MS.gene80717.t1 |
| Gene Sequence |
| Protein sequence |
