Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44351.t1 | XP_003613199.1 | 99.5 | 423 | 2 | 0 | 1 | 423 | 1 | 423 | 3.80E-239 | 837 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44351.t1 | Q9SGY2 | 87.9 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 3.2e-218 | 758.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44351.t1 | G7K076 | 99.5 | 423 | 2 | 0 | 1 | 423 | 1 | 423 | 2.7e-239 | 837.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene44351 | -0.801658 | 8.12E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene44351 | -0.808146 | 3.57E-50 | -1.69E-46 |
| MS.gene051973 | MS.gene44351 | 0.813165 | 2.94E-51 | -1.69E-46 |
| MS.gene052015 | MS.gene44351 | 0.850568 | 1.56E-60 | -1.69E-46 |
| MS.gene052289 | MS.gene44351 | 0.804491 | 2.11E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene44351 | 0.842122 | 3.14E-58 | -1.69E-46 |
| MS.gene052606 | MS.gene44351 | 0.848584 | 5.58E-60 | -1.69E-46 |
| MS.gene053097 | MS.gene44351 | 0.852868 | 3.48E-61 | -1.69E-46 |
| MS.gene053203 | MS.gene44351 | -0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene44351 | 0.812759 | 3.61E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene44351 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene44351 | -0.856861 | 2.42E-62 | -1.69E-46 |
| MS.gene055729 | MS.gene44351 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene055730 | MS.gene44351 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene055731 | MS.gene44351 | 0.823646 | 1.24E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene44351 | -0.824032 | 1.01E-53 | -1.69E-46 |
| MS.gene056748 | MS.gene44351 | 0.813945 | 1.98E-51 | -1.69E-46 |
| MS.gene056988 | MS.gene44351 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene057081 | MS.gene44351 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene44351 | -0.802052 | 6.73E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene44351 | 0.811303 | 7.49E-51 | -1.69E-46 |
| MS.gene058076 | MS.gene44351 | 0.807211 | 5.65E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene44351 | 0.818288 | 2.12E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene44351 | -0.822978 | 1.77E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene44351 | -0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene059103 | MS.gene44351 | 0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene44351 | -0.85134 | 9.46E-61 | -1.69E-46 |
| MS.gene059480 | MS.gene44351 | 0.820807 | 5.64E-53 | -1.69E-46 |
| MS.gene05960 | MS.gene44351 | 0.849298 | 3.54E-60 | -1.69E-46 |
| MS.gene059892 | MS.gene44351 | 0.801541 | 8.58E-49 | -1.69E-46 |
| MS.gene060358 | MS.gene44351 | 0.821476 | 3.96E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene44351 | -0.805695 | 1.18E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene44351 | 0.805759 | 1.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90397 | MS.gene44351 | PPI |
| MS.gene60924 | MS.gene44351 | PPI |
| MS.gene44351 | MS.gene60923 | PPI |
| MS.gene53461 | MS.gene44351 | PPI |
| MS.gene065831 | MS.gene44351 | PPI |
| MS.gene027658 | MS.gene44351 | PPI |
| MS.gene80717 | MS.gene44351 | PPI |
| MS.gene60923 | MS.gene44351 | PPI |
| MS.gene92246 | MS.gene44351 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44351.t1 | MTR_5g033920 | 99.527 | 423 | 2 | 0 | 1 | 423 | 1 | 423 | 0.0 | 862 |
| MS.gene44351.t1 | MTR_5g033920 | 97.907 | 430 | 2 | 1 | 1 | 423 | 1 | 430 | 0.0 | 854 |
| MS.gene44351.t1 | MTR_2g062920 | 91.489 | 423 | 36 | 0 | 1 | 423 | 1 | 423 | 0.0 | 798 |
| MS.gene44351.t1 | MTR_2g062920 | 92.287 | 363 | 28 | 0 | 61 | 423 | 1 | 363 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44351.t1 | AT1G10670 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 777 |
| MS.gene44351.t1 | AT1G10670 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 777 |
| MS.gene44351.t1 | AT1G10670 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 777 |
| MS.gene44351.t1 | AT1G60810 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 772 |
| MS.gene44351.t1 | AT1G60810 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 772 |
| MS.gene44351.t1 | AT1G10670 | 83.973 | 443 | 51 | 1 | 1 | 423 | 1 | 443 | 0.0 | 764 |
| MS.gene44351.t1 | AT1G09430 | 81.623 | 419 | 77 | 0 | 1 | 419 | 1 | 419 | 0.0 | 731 |
Find 99 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTTTGTTACAGGTTTA+TGG | 0.135148 | 5.1:-24846783 | MS.gene44351:intron |
| GTGAAACCTGACATGTTATT+TGG | 0.166150 | 5.1:-24850183 | MS.gene44351:CDS |
| ATGGCTTTCTTCTTCTAAAT+TGG | 0.172223 | 5.1:-24850208 | MS.gene44351:CDS |
| TTTCCATCAACCAATGTAAA+AGG | 0.245174 | 5.1:+24849235 | None:intergenic |
| GCCACTGAGTCTTTCATTCA+TGG | 0.261851 | 5.1:-24848997 | MS.gene44351:CDS |
| TGGTTTGGTTGCCTTGAATT+TGG | 0.268556 | 5.1:-24850145 | MS.gene44351:CDS |
| TGAACCCAAAGGGCCGAATT+TGG | 0.281078 | 5.1:-24848115 | MS.gene44351:CDS |
| CGAATTTGGACAATGGTTGC+TGG | 0.300252 | 5.1:-24848101 | MS.gene44351:CDS |
| GAATCGATATTGAAGAGAAT+TGG | 0.314663 | 5.1:-24849799 | MS.gene44351:CDS |
| ATTGAAAATATAGGTTGAAA+TGG | 0.324243 | 5.1:-24849945 | MS.gene44351:intron |
| TTCAATTAGCTAACCTCAAT+CGG | 0.325607 | 5.1:+24846894 | None:intergenic |
| CGAGCACTTGGAGAGGAAAT+TGG | 0.328982 | 5.1:-24846921 | MS.gene44351:CDS |
| GGTTGCCTTGAATTTGGATT+TGG | 0.332415 | 5.1:-24850139 | MS.gene44351:CDS |
| TTGTCCAAATTCGGCCCTTT+GGG | 0.337602 | 5.1:+24848111 | None:intergenic |
| TTAATACAGGTAGGCGATCT+TGG | 0.342068 | 5.1:-24847959 | MS.gene44351:intron |
| ATTGTCCAAATTCGGCCCTT+TGG | 0.347305 | 5.1:+24848110 | None:intergenic |
| ATACCAGTCATTGTTGCTTC+AGG | 0.359407 | 5.1:+24846759 | None:intergenic |
| CTGCAAAACCTCCTCTTCAT+TGG | 0.362473 | 5.1:+24847892 | None:intergenic |
| GATCCAGGAGTCAAAGTTAA+AGG | 0.363388 | 5.1:-24847009 | MS.gene44351:intron |
| TGATGGAAAGCCTTATCCTT+TGG | 0.370162 | 5.1:-24849221 | MS.gene44351:CDS |
| CAGCAACCATTGTCCAAATT+CGG | 0.373694 | 5.1:+24848102 | None:intergenic |
| CTTACTTGTGCAGACTTGAT+AGG | 0.377362 | 5.1:+24851061 | None:intergenic |
| GAGCACTTTAAGAGACTATC+TGG | 0.382341 | 5.1:-24851094 | MS.gene44351:CDS |
| ACTTGTTGCAACCCTTCCCT+TGG | 0.384681 | 5.1:-24849605 | MS.gene44351:CDS |
| CTTGGCTTTGCAAATGAGCT+TGG | 0.386907 | 5.1:-24847941 | MS.gene44351:CDS |
| TTGAAAATATAGGTTGAAAT+GGG | 0.391559 | 5.1:-24849944 | MS.gene44351:intron |
| AATCGATATTGAAGAGAATT+GGG | 0.403789 | 5.1:-24849798 | MS.gene44351:CDS |
| CTTTCACAAATGAAGCAACT+TGG | 0.406529 | 5.1:+24850115 | None:intergenic |
| ATTGAATTTCCATTGCCATT+TGG | 0.427635 | 5.1:-24849033 | MS.gene44351:CDS |
| TCAACAATGAAAGTTGTTAT+CGG | 0.431360 | 5.1:+24849908 | None:intergenic |
| GGTAATACTCTTCATTATGT+AGG | 0.440796 | 5.1:+24849876 | None:intergenic |
| TGAAACCTGACATGTTATTT+GGG | 0.440993 | 5.1:-24850182 | MS.gene44351:CDS |
| CGCTTCCCAAATAACATGTC+AGG | 0.451633 | 5.1:+24850177 | None:intergenic |
| ATAGATCAAGGGAGAAATTG+AGG | 0.459317 | 5.1:-24849461 | MS.gene44351:intron |
| CATTCATGGATTAGATGAAA+AGG | 0.460623 | 5.1:-24848983 | MS.gene44351:intron |
| TGTTGCAACCCTTCCCTTGG+AGG | 0.460679 | 5.1:-24849602 | MS.gene44351:intron |
| TGGCATAATTCGGGCACTAA+AGG | 0.461705 | 5.1:-24847120 | MS.gene44351:CDS |
| TGCAAAACCTCCTCTTCATT+GGG | 0.463887 | 5.1:+24847893 | None:intergenic |
| GAATTTGGACAATGGTTGCT+GGG | 0.465292 | 5.1:-24848100 | MS.gene44351:CDS |
| TTTGGGAAGCGTGGTAAAAG+TGG | 0.468444 | 5.1:-24850165 | MS.gene44351:CDS |
| TAAATTGAATTTACCTCCAA+GGG | 0.486977 | 5.1:+24849589 | None:intergenic |
| AATGACTGGTATATGCAAAC+AGG | 0.488870 | 5.1:-24846748 | MS.gene44351:CDS |
| AATTTCCATTGCCATTTGGA+AGG | 0.489649 | 5.1:-24849029 | MS.gene44351:CDS |
| CCTCTCATATCCAAAGGATA+AGG | 0.491900 | 5.1:+24849211 | None:intergenic |
| TGATTCTAAGAGATTGTTGA+AGG | 0.494704 | 5.1:-24851116 | MS.gene44351:CDS |
| ACTTACATCAATTACAACTC+TGG | 0.505750 | 5.1:+24847865 | None:intergenic |
| TTGGGCCAAATCCAAATTCA+AGG | 0.506250 | 5.1:+24850134 | None:intergenic |
| TTCACTGTGTTGAACCCAAA+GGG | 0.510313 | 5.1:-24848125 | MS.gene44351:CDS |
| GGAAATTGGCATCCCGATTG+AGG | 0.511227 | 5.1:-24846907 | MS.gene44351:intron |
| GTCTGTCAGAGACAATGTTA+AGG | 0.515654 | 5.1:+24849855 | None:intergenic |
| GGAAACTATGCAGAATATAG+TGG | 0.517156 | 5.1:-24847920 | MS.gene44351:CDS |
| GAAGCGTGGTAAAAGTGGTT+TGG | 0.519204 | 5.1:-24850160 | MS.gene44351:CDS |
| TCAATTAGCTAACCTCAATC+GGG | 0.519937 | 5.1:+24846895 | None:intergenic |
| TTAAATTGAATTTACCTCCA+AGG | 0.523717 | 5.1:+24849588 | None:intergenic |
| TATTGAAGAGAATTGGGATA+AGG | 0.523886 | 5.1:-24849792 | MS.gene44351:intron |
| TTGAATTTACCTCCAAGGGA+AGG | 0.525190 | 5.1:+24849593 | None:intergenic |
| AGGGAAGGGTTGCAACAAGT+GGG | 0.528893 | 5.1:+24849608 | None:intergenic |
| GGTTGAAATGGGTGGATGCA+AGG | 0.529860 | 5.1:-24849933 | MS.gene44351:CDS |
| TTTCACAAATGAAGCAACTT+GGG | 0.530236 | 5.1:+24850116 | None:intergenic |
| AACATTGTCTCTGACAGACT+TGG | 0.532898 | 5.1:-24849851 | MS.gene44351:CDS |
| GAAAGAGCGTCTTGGTAAAG+AGG | 0.535308 | 5.1:-24850097 | MS.gene44351:intron |
| TGCACCTTTATGTGAGGCGA+GGG | 0.535874 | 5.1:-24846977 | MS.gene44351:CDS |
| TGAATTTACCTCCAAGGGAA+GGG | 0.537577 | 5.1:+24849594 | None:intergenic |
| GGACCTGAAGCAACAATGAC+TGG | 0.541528 | 5.1:-24846762 | MS.gene44351:CDS |
| AAGGGAAGGGTTGCAACAAG+TGG | 0.542096 | 5.1:+24849607 | None:intergenic |
| AGGGCTCTTGTTATAGGTGG+AGG | 0.545602 | 5.1:-24847179 | MS.gene44351:CDS |
| GCACTCATAACCCTTCCAAA+TGG | 0.556781 | 5.1:+24849018 | None:intergenic |
| TCTTCATTATGTAGGATGAA+AGG | 0.560947 | 5.1:+24849884 | None:intergenic |
| ATTTCCATTGCCATTTGGAA+GGG | 0.562037 | 5.1:-24849028 | MS.gene44351:CDS |
| GTTGAAATGGGTGGATGCAA+GGG | 0.564098 | 5.1:-24849932 | MS.gene44351:CDS |
| TAGTGTCATCTACGCTGATA+CGG | 0.565668 | 5.1:-24848069 | MS.gene44351:intron |
| TCATTTGTGAAAGAGCGTCT+TGG | 0.569120 | 5.1:-24850105 | MS.gene44351:CDS |
| AGAAATTGAGGAATTTCTCA+AGG | 0.569980 | 5.1:-24849449 | MS.gene44351:CDS |
| ATAACCCTTCCAAATGGCAA+TGG | 0.584751 | 5.1:+24849024 | None:intergenic |
| AAAAGGGCTCTTGTTATAGG+TGG | 0.587346 | 5.1:-24847182 | MS.gene44351:CDS |
| AAAATATAGGTTGAAATGGG+TGG | 0.588383 | 5.1:-24849941 | MS.gene44351:intron |
| CCTTATCCTTTGGATATGAG+AGG | 0.593802 | 5.1:-24849211 | MS.gene44351:CDS |
| ACCTGAAATGGATAGTTAAG+CGG | 0.596270 | 5.1:+24846704 | None:intergenic |
| AGCTCGCCTCTCATATCCAA+AGG | 0.606308 | 5.1:+24849205 | None:intergenic |
| GGGAAGGGTTGCAACAAGTG+GGG | 0.607919 | 5.1:+24849609 | None:intergenic |
| AATTCGGGCACTAAAGGAGA+AGG | 0.611871 | 5.1:-24847114 | MS.gene44351:intron |
| CACCTTTATGTGAGGCGAGG+GGG | 0.612540 | 5.1:-24846975 | MS.gene44351:CDS |
| AATTTGGACAATGGTTGCTG+GGG | 0.612808 | 5.1:-24848099 | MS.gene44351:CDS |
| TTTCACTGAGCTGCAAGACA+AGG | 0.614695 | 5.1:-24850235 | MS.gene44351:CDS |
| TAGTGGTGCACCCAATGAAG+AGG | 0.615153 | 5.1:-24847903 | MS.gene44351:CDS |
| ATGCACCTTTATGTGAGGCG+AGG | 0.615319 | 5.1:-24846978 | MS.gene44351:CDS |
| AGCTGCAAGACAAGGAACAA+TGG | 0.615951 | 5.1:-24850227 | MS.gene44351:CDS |
| AAAGGGCCGAATTTGGACAA+TGG | 0.617352 | 5.1:-24848108 | MS.gene44351:CDS |
| GATGTAAGAGACACTCCCGT+TGG | 0.624325 | 5.1:+24849643 | None:intergenic |
| ATTTGGACAATGGTTGCTGG+GGG | 0.626405 | 5.1:-24848098 | MS.gene44351:CDS |
| GACATGTTATTTGGGAAGCG+TGG | 0.630841 | 5.1:-24850174 | MS.gene44351:CDS |
| TGGTGCACCCAATGAAGAGG+AGG | 0.642713 | 5.1:-24847900 | MS.gene44351:CDS |
| CAAGAATGCACCTTTATGTG+AGG | 0.651491 | 5.1:-24846983 | MS.gene44351:CDS |
| CTTTAAGAGACTATCTGGCA+AGG | 0.654357 | 5.1:-24851089 | MS.gene44351:CDS |
| ATTCACTGTGTTGAACCCAA+AGG | 0.654553 | 5.1:-24848126 | MS.gene44351:CDS |
| GCACCTTTATGTGAGGCGAG+GGG | 0.663860 | 5.1:-24846976 | MS.gene44351:CDS |
| TGTGCAACTGCTGACCCCGA+TGG | 0.666883 | 5.1:-24847209 | MS.gene44351:CDS |
| TTGCAGCTCAGTGAAATCAG+TGG | 0.670844 | 5.1:+24850242 | None:intergenic |
| TCCATGAATGAAAGACTCAG+TGG | 0.707219 | 5.1:+24848996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATCTTTAAATTGAT+AGG | + | chr5.1:24850052-24850071 | None:intergenic | 10.0% |
| !! | AAATATTAATTAATACAGGT+AGG | - | chr5.1:24849893-24849912 | MS.gene44351:CDS | 15.0% |
| !! | AACTTATAAGTTAGTTAATT+TGG | + | chr5.1:24850369-24850388 | None:intergenic | 15.0% |
| !! | TCAATTTAAAGATTTAATTG+TGG | - | chr5.1:24850053-24850072 | MS.gene44351:intron | 15.0% |
| !! | TGCTAAATATTAATTAATAC+AGG | - | chr5.1:24849889-24849908 | MS.gene44351:CDS | 15.0% |
| !! | TTGAATAAAATTGTACATTT+AGG | + | chr5.1:24848923-24848942 | None:intergenic | 15.0% |
| !!! | TCTATTTCTTAAATTATTAC+TGG | - | chr5.1:24849589-24849608 | MS.gene44351:intron | 15.0% |
| !!! | TTTTGTGATAAATTTTTAAG+TGG | - | chr5.1:24846923-24846942 | MS.gene44351:CDS | 15.0% |
| !! | AAAATATATCAATGGTTGAA+AGG | + | chr5.1:24847884-24847903 | None:intergenic | 20.0% |
| !! | AAATATATCAATGGTTGAAA+GGG | + | chr5.1:24847883-24847902 | None:intergenic | 20.0% |
| !! | AAATTGGTCCAATAAATTAT+TGG | + | chr5.1:24850321-24850340 | None:intergenic | 20.0% |
| !! | AAGGTAAACTAATATAACTT+TGG | - | chr5.1:24848897-24848916 | MS.gene44351:intron | 20.0% |
| !! | AATCTTAAAAGAAAACAGTA+CGG | + | chr5.1:24848542-24848561 | None:intergenic | 20.0% |
| !! | ACAAAAAATATGTACTTAAC+AGG | + | chr5.1:24848985-24849004 | None:intergenic | 20.0% |
| !! | ATAAGCTGAAAAATATCTTA+TGG | - | chr5.1:24847363-24847382 | MS.gene44351:intron | 20.0% |
| !! | TAAGCTGAAAAATATCTTAT+GGG | - | chr5.1:24847364-24847383 | MS.gene44351:intron | 20.0% |
| !! | TATTGTATTGAACAATCAAA+TGG | - | chr5.1:24851005-24851024 | MS.gene44351:intron | 20.0% |
| !! | TTGTTCAATACAATAAATAG+AGG | + | chr5.1:24851000-24851019 | None:intergenic | 20.0% |
| !! | TTGTTCGTAAAATAACAAAT+TGG | + | chr5.1:24848302-24848321 | None:intergenic | 20.0% |
| !!! | AATGTTATGTGTTATTTTGA+AGG | - | chr5.1:24848729-24848748 | MS.gene44351:intron | 20.0% |
| !!! | AGCAGTTTATTAATTCTTTT+TGG | - | chr5.1:24851055-24851074 | MS.gene44351:intron | 20.0% |
| !!! | ATATCACTTTTACTTAAAGT+AGG | - | chr5.1:24847190-24847209 | MS.gene44351:CDS | 20.0% |
| !!! | ATCTTTTGCCAATAATTTAT+TGG | - | chr5.1:24850310-24850329 | MS.gene44351:intron | 20.0% |
| !!! | ATTGAAAATATAGGTTGAAA+TGG | - | chr5.1:24847916-24847935 | MS.gene44351:CDS | 20.0% |
| !!! | GTTTTTTTAACTTCTTACTT+GGG | - | chr5.1:24849003-24849022 | MS.gene44351:CDS | 20.0% |
| !!! | TGTTTTTTTAACTTCTTACT+TGG | - | chr5.1:24849002-24849021 | MS.gene44351:CDS | 20.0% |
| !!! | TTCACGACAATTTTTTTAAA+TGG | + | chr5.1:24847067-24847086 | None:intergenic | 20.0% |
| !!! | TTGAAAATATAGGTTGAAAT+GGG | - | chr5.1:24847917-24847936 | MS.gene44351:CDS | 20.0% |
| !!! | TTGTAATTTTGGTTAATTCA+GGG | - | chr5.1:24850457-24850476 | MS.gene44351:intron | 20.0% |
| !!! | TTTATTTTGAACTGATCTTA+TGG | + | chr5.1:24847459-24847478 | None:intergenic | 20.0% |
| !!! | TTTCATTGTCTTCATTTTAT+GGG | + | chr5.1:24849184-24849203 | None:intergenic | 20.0% |
| !!! | TTTGTAATTTTGGTTAATTC+AGG | - | chr5.1:24850456-24850475 | MS.gene44351:intron | 20.0% |
| !!! | TTTTTTTAACTTCTTACTTG+GGG | - | chr5.1:24849004-24849023 | MS.gene44351:CDS | 20.0% |
| ! | AATCGATATTGAAGAGAATT+GGG | - | chr5.1:24848063-24848082 | MS.gene44351:intron | 25.0% |
| ! | AATGTAAGACAATGAATGTA+AGG | + | chr5.1:24847828-24847847 | None:intergenic | 25.0% |
| ! | ACAGAGAATGAAATGATAAT+CGG | - | chr5.1:24849259-24849278 | MS.gene44351:CDS | 25.0% |
| ! | ACGTGACTAAAATATATCAA+TGG | + | chr5.1:24847892-24847911 | None:intergenic | 25.0% |
| ! | ATATCTTTGTTACAGGTTTA+TGG | - | chr5.1:24851078-24851097 | MS.gene44351:CDS | 25.0% |
| ! | ATTATCCATAACCTTCAAAT+TGG | - | chr5.1:24848161-24848180 | MS.gene44351:intron | 25.0% |
| ! | CACGTGTTTATTGAAAATAT+AGG | - | chr5.1:24847907-24847926 | MS.gene44351:CDS | 25.0% |
| ! | TAAATTGAATTTACCTCCAA+GGG | + | chr5.1:24848275-24848294 | None:intergenic | 25.0% |
| ! | TAATAGGAAAAATTGTGTTG+AGG | - | chr5.1:24851032-24851051 | MS.gene44351:intron | 25.0% |
| ! | TCAACAATGAAAGTTGTTAT+CGG | + | chr5.1:24847956-24847975 | None:intergenic | 25.0% |
| ! | TCATCAATAAGTCATTGATA+CGG | + | chr5.1:24849624-24849643 | None:intergenic | 25.0% |
| ! | TCTTGTTAGTTCATACTAAT+GGG | - | chr5.1:24848754-24848773 | MS.gene44351:intron | 25.0% |
| ! | TTAAATTGAATTTACCTCCA+AGG | + | chr5.1:24848276-24848295 | None:intergenic | 25.0% |
| !! | AATAGAGTAAACACTCATTT+TGG | + | chr5.1:24850515-24850534 | None:intergenic | 25.0% |
| !! | GTAGGAGTAAACAATAATTT+TGG | - | chr5.1:24850211-24850230 | MS.gene44351:CDS | 25.0% |
| !! | GTGTAATTTAAAATGTTGCA+AGG | - | chr5.1:24849066-24849085 | MS.gene44351:intron | 25.0% |
| !! | GTTTCATTGTCTTCATTTTA+TGG | + | chr5.1:24849185-24849204 | None:intergenic | 25.0% |
| !! | TAAGAGAAAATTTTATGTGC+AGG | + | chr5.1:24848142-24848161 | None:intergenic | 25.0% |
| !! | TGATGTCTCTAAAAAACTAT+AGG | - | chr5.1:24850103-24850122 | MS.gene44351:CDS | 25.0% |
| !! | TTTTACGAACAAACTAACTT+TGG | - | chr5.1:24848310-24848329 | MS.gene44351:intron | 25.0% |
| !! | TTTTTGGATATCTTTGTTAC+AGG | - | chr5.1:24851071-24851090 | MS.gene44351:CDS | 25.0% |
| !!! | GCTTATTGATTTCTGAAAAA+TGG | + | chr5.1:24847511-24847530 | None:intergenic | 25.0% |
| !!! | TAAGACTGTTTTTATTCCAA+CGG | - | chr5.1:24848202-24848221 | MS.gene44351:intron | 25.0% |
| !!! | TTTTTTAACTTCTTACTTGG+GGG | - | chr5.1:24849005-24849024 | MS.gene44351:CDS | 25.0% |
| ACAATCAAATGGTGCTTAAT+AGG | - | chr5.1:24851016-24851035 | MS.gene44351:intron | 30.0% | |
| ACAATGAATGTAAGGTTTGA+AGG | + | chr5.1:24847820-24847839 | None:intergenic | 30.0% | |
| ACTTACATCAATTACAACTC+TGG | + | chr5.1:24849999-24850018 | None:intergenic | 30.0% | |
| AGAAATTGAGGAATTTCTCA+AGG | - | chr5.1:24848412-24848431 | MS.gene44351:intron | 30.0% | |
| AGCATATTAAGCACAATGTA+TGG | + | chr5.1:24847418-24847437 | None:intergenic | 30.0% | |
| ATATGACCAAACCAATTTGA+AGG | + | chr5.1:24848175-24848194 | None:intergenic | 30.0% | |
| ATGGCTTTCTTCTTCTAAAT+TGG | - | chr5.1:24847653-24847672 | MS.gene44351:intron | 30.0% | |
| ATTGAATGCAACTACATGTT+TGG | + | chr5.1:24849565-24849584 | None:intergenic | 30.0% | |
| ATTGAATTTCCATTGCCATT+TGG | - | chr5.1:24848828-24848847 | MS.gene44351:intron | 30.0% | |
| ATTGGCAAAAGATATACTCA+AGG | + | chr5.1:24850303-24850322 | None:intergenic | 30.0% | |
| CGTGTATGCAAGTTTAATAA+AGG | - | chr5.1:24847484-24847503 | MS.gene44351:intron | 30.0% | |
| GAATCGATATTGAAGAGAAT+TGG | - | chr5.1:24848062-24848081 | MS.gene44351:intron | 30.0% | |
| GATATCACTTGACATATTCA+AGG | - | chr5.1:24850488-24850507 | MS.gene44351:intron | 30.0% | |
| GGTAATACTCTTCATTATGT+AGG | + | chr5.1:24847988-24848007 | None:intergenic | 30.0% | |
| GTAGAAAGAACACAATTGAT+TGG | - | chr5.1:24847105-24847124 | MS.gene44351:intron | 30.0% | |
| GTTAATTATGTCCGAATTCA+TGG | - | chr5.1:24846967-24846986 | MS.gene44351:CDS | 30.0% | |
| TAACATATCCTAGAAGAAAG+TGG | + | chr5.1:24849458-24849477 | None:intergenic | 30.0% | |
| TACTACAATGGACATATTCA+AGG | - | chr5.1:24850412-24850431 | MS.gene44351:intron | 30.0% | |
| TATTGAAGAGAATTGGGATA+AGG | - | chr5.1:24848069-24848088 | MS.gene44351:intron | 30.0% | |
| TATTGGACCAATTTGACTAA+TGG | - | chr5.1:24850327-24850346 | MS.gene44351:intron | 30.0% | |
| TCTTCATTATGTAGGATGAA+AGG | + | chr5.1:24847980-24847999 | None:intergenic | 30.0% | |
| TTCAATTAGCTAACCTCAAT+CGG | + | chr5.1:24850970-24850989 | None:intergenic | 30.0% | |
| TTCACAAGTTATGAAACTGA+TGG | - | chr5.1:24849156-24849175 | MS.gene44351:intron | 30.0% | |
| TTGAATATGTCCATTGTAGT+AGG | + | chr5.1:24850413-24850432 | None:intergenic | 30.0% | |
| TTGAATGCAACTACATGTTT+GGG | + | chr5.1:24849564-24849583 | None:intergenic | 30.0% | |
| TTGGCAAAAGATATACTCAA+GGG | + | chr5.1:24850302-24850321 | None:intergenic | 30.0% | |
| TTTCAAGAACTTCAAGAAGT+AGG | - | chr5.1:24848694-24848713 | MS.gene44351:intron | 30.0% | |
| TTTCACAAATGAAGCAACTT+GGG | + | chr5.1:24847748-24847767 | None:intergenic | 30.0% | |
| TTTCCATCAACCAATGTAAA+AGG | + | chr5.1:24848629-24848648 | None:intergenic | 30.0% | |
| ! | AAAATATAGGTTGAAATGGG+TGG | - | chr5.1:24847920-24847939 | MS.gene44351:CDS | 30.0% |
| ! | AAGATGAAAAGTATGTGTTG+TGG | + | chr5.1:24848097-24848116 | None:intergenic | 30.0% |
| ! | AGAGATGAATCCTTTTACAT+TGG | - | chr5.1:24848616-24848635 | MS.gene44351:intron | 30.0% |
| ! | GTCTTGTTAGTTCATACTAA+TGG | - | chr5.1:24848753-24848772 | MS.gene44351:intron | 30.0% |
| ! | TACTTTTAGTGGCATAATTC+GGG | - | chr5.1:24850732-24850751 | MS.gene44351:intron | 30.0% |
| ! | TGAAACCTGACATGTTATTT+GGG | - | chr5.1:24847679-24847698 | MS.gene44351:intron | 30.0% |
| ! | TGATTCTAAGAGATTGTTGA+AGG | - | chr5.1:24846745-24846764 | MS.gene44351:CDS | 30.0% |
| ! | TTGTTGTTGTTGTATTCTGT+AGG | - | chr5.1:24850193-24850212 | MS.gene44351:CDS | 30.0% |
| ! | TTTTATGTGCAGGAAATAGA+TGG | + | chr5.1:24848132-24848151 | None:intergenic | 30.0% |
| ! | TTTTTGAACTATTGTGATCC+AGG | - | chr5.1:24850837-24850856 | MS.gene44351:intron | 30.0% |
| !! | AATCCTTTTACATTGGTTGA+TGG | - | chr5.1:24848623-24848642 | MS.gene44351:intron | 30.0% |
| !! | AATTGGTTTGGTCATATTTC+AGG | - | chr5.1:24848178-24848197 | MS.gene44351:intron | 30.0% |
| !! | ACTTTCTTCTAGGATATGTT+AGG | - | chr5.1:24849457-24849476 | MS.gene44351:CDS | 30.0% |
| !! | AGTTTGTTAGCAAATGTGTT+AGG | + | chr5.1:24849326-24849345 | None:intergenic | 30.0% |
| !! | CATTCATGGATTAGATGAAA+AGG | - | chr5.1:24848878-24848897 | MS.gene44351:intron | 30.0% |
| !! | CTACTTTTAGTGGCATAATT+CGG | - | chr5.1:24850731-24850750 | MS.gene44351:intron | 30.0% |
| !! | GAAGTATTGTTGTTTCTGAT+AGG | + | chr5.1:24849486-24849505 | None:intergenic | 30.0% |
| !! | GTGATTTTCACTCTTTTTCA+AGG | - | chr5.1:24848434-24848453 | MS.gene44351:intron | 30.0% |
| !! | TTTTACTTTTCTGTCAGATC+TGG | - | chr5.1:24848580-24848599 | MS.gene44351:intron | 30.0% |
| !!! | AAGACTGTTTTTATTCCAAC+GGG | - | chr5.1:24848203-24848222 | MS.gene44351:intron | 30.0% |
| !!! | CTTGAGTATCGAATTTGTTT+TGG | - | chr5.1:24847573-24847592 | MS.gene44351:intron | 30.0% |
| !!! | GCACTGTTTTTATAGATCAA+GGG | - | chr5.1:24848389-24848408 | MS.gene44351:intron | 30.0% |
| !!! | TCAAGGGTGTTTATGTATTT+TGG | + | chr5.1:24850286-24850305 | None:intergenic | 30.0% |
| !!! | TGCACTGTTTTTATAGATCA+AGG | - | chr5.1:24848388-24848407 | MS.gene44351:intron | 30.0% |
| !!! | TTGTTTTGGTTTGTGCTTTA+AGG | - | chr5.1:24847587-24847606 | MS.gene44351:intron | 30.0% |
| AACTGAACTCTCTGAATTCT+AGG | - | chr5.1:24849396-24849415 | MS.gene44351:intron | 35.0% | |
| AAGCAAAACTCTACTGTTGT+GGG | + | chr5.1:24850777-24850796 | None:intergenic | 35.0% | |
| AATGACTGGTATATGCAAAC+AGG | - | chr5.1:24851113-24851132 | MS.gene44351:CDS | 35.0% | |
| AATTACACCAGATTCCTCTA+AGG | + | chr5.1:24849054-24849073 | None:intergenic | 35.0% | |
| AATTCAGAGAGTTCAGTTAC+AGG | + | chr5.1:24849394-24849413 | None:intergenic | 35.0% | |
| ACTAATGGAAGACACATTCA+AGG | - | chr5.1:24850342-24850361 | MS.gene44351:intron | 35.0% | |
| ACTGAACTCTCTGAATTCTA+GGG | - | chr5.1:24849397-24849416 | MS.gene44351:intron | 35.0% | |
| ATAGATCAAGGGAGAAATTG+AGG | - | chr5.1:24848400-24848419 | MS.gene44351:intron | 35.0% | |
| ATCTTCCCTAACCATGAATT+CGG | + | chr5.1:24846981-24847000 | None:intergenic | 35.0% | |
| ATTACACCAGATTCCTCTAA+GGG | + | chr5.1:24849053-24849072 | None:intergenic | 35.0% | |
| CCAAACCAATTTGAAGGTTA+TGG | + | chr5.1:24848169-24848188 | None:intergenic | 35.0% | |
| CCATAACCTTCAAATTGGTT+TGG | - | chr5.1:24848166-24848185 | MS.gene44351:intron | 35.0% | |
| CCATATGAGAGAAAATGAGT+TGG | + | chr5.1:24849433-24849452 | None:intergenic | 35.0% | |
| CTTTCACAAATGAAGCAACT+TGG | + | chr5.1:24847749-24847768 | None:intergenic | 35.0% | |
| GAATACAACAACAACAACCA+AGG | + | chr5.1:24850190-24850209 | None:intergenic | 35.0% | |
| GGAAACTATGCAGAATATAG+TGG | - | chr5.1:24849941-24849960 | MS.gene44351:intron | 35.0% | |
| GTGAAACCTGACATGTTATT+TGG | - | chr5.1:24847678-24847697 | MS.gene44351:intron | 35.0% | |
| GTGTCTTCCATTAGTCAAAT+TGG | + | chr5.1:24850337-24850356 | None:intergenic | 35.0% | |
| GTTACTTCATGCTGCAAATA+TGG | + | chr5.1:24849861-24849880 | None:intergenic | 35.0% | |
| GTTAGTGCAGTTCAAATATG+TGG | - | chr5.1:24846945-24846964 | MS.gene44351:CDS | 35.0% | |
| TAAGCAAAACTCTACTGTTG+TGG | + | chr5.1:24850778-24850797 | None:intergenic | 35.0% | |
| TATGTCCATTGTAGTAGGTT+TGG | + | chr5.1:24850408-24850427 | None:intergenic | 35.0% | |
| TATGTCCGAATTCATGGTTA+GGG | - | chr5.1:24846973-24846992 | MS.gene44351:CDS | 35.0% | |
| TCAATTAGCTAACCTCAATC+GGG | + | chr5.1:24850969-24850988 | None:intergenic | 35.0% | |
| TGAATGTAAGGTTTGAAGGA+CGG | + | chr5.1:24847816-24847835 | None:intergenic | 35.0% | |
| TTATGTCCGAATTCATGGTT+AGG | - | chr5.1:24846972-24846991 | MS.gene44351:CDS | 35.0% | |
| ! | AATTTCCATTGCCATTTGGA+AGG | - | chr5.1:24848832-24848851 | MS.gene44351:intron | 35.0% |
| ! | AGCATAAGCTTTTCAGAATG+TGG | - | chr5.1:24848037-24848056 | MS.gene44351:intron | 35.0% |
| ! | ATAAGCTTTTCAGAATGTGG+AGG | - | chr5.1:24848040-24848059 | MS.gene44351:intron | 35.0% |
| ! | ATTTCCATTGCCATTTGGAA+GGG | - | chr5.1:24848833-24848852 | MS.gene44351:intron | 35.0% |
| ! | CAAAAAAGGGCTCTTGTTAT+AGG | - | chr5.1:24850676-24850695 | MS.gene44351:intron | 35.0% |
| ! | CCAACTCATTTTCTCTCATA+TGG | - | chr5.1:24849430-24849449 | MS.gene44351:CDS | 35.0% |
| ! | TAGGTATTCTGAGAACACTA+TGG | - | chr5.1:24850122-24850141 | MS.gene44351:CDS | 35.0% |
| !! | ATGAGAGAAAATGAGTTGGT+TGG | + | chr5.1:24849429-24849448 | None:intergenic | 35.0% |
| !! | TGGTTTGTGCTTTAAGGTTA+CGG | - | chr5.1:24847593-24847612 | MS.gene44351:intron | 35.0% |
| !!! | CTATAACAAGAGCCCTTTTT+TGG | + | chr5.1:24850678-24850697 | None:intergenic | 35.0% |
| !!! | GCATTTTTTCTAGACCCTTT+TGG | + | chr5.1:24850921-24850940 | None:intergenic | 35.0% |
| AACATTGTCTCTGACAGACT+TGG | - | chr5.1:24848010-24848029 | MS.gene44351:intron | 40.0% | |
| AATGTATATTAGCACGCCAC+TGG | - | chr5.1:24848472-24848491 | MS.gene44351:intron | 40.0% | |
| AATTTGGACAATGGTTGCTG+GGG | - | chr5.1:24849762-24849781 | MS.gene44351:intron | 40.0% | |
| ATAACCCTTCCAAATGGCAA+TGG | + | chr5.1:24848840-24848859 | None:intergenic | 40.0% | |
| ATATGGCTCCACTTTCTTCT+AGG | - | chr5.1:24849447-24849466 | MS.gene44351:CDS | 40.0% | |
| ATGAACAGACGTTGTCGTAT+TGG | - | chr5.1:24848789-24848808 | MS.gene44351:intron | 40.0% | |
| ATGTATATTAGCACGCCACT+GGG | - | chr5.1:24848473-24848492 | MS.gene44351:intron | 40.0% | |
| ATTCACTGTGTTGAACCCAA+AGG | - | chr5.1:24849735-24849754 | MS.gene44351:intron | 40.0% | |
| CAAGAATGCACCTTTATGTG+AGG | - | chr5.1:24850878-24850897 | MS.gene44351:intron | 40.0% | |
| CAGCAACCATTGTCCAAATT+CGG | + | chr5.1:24849762-24849781 | None:intergenic | 40.0% | |
| CCTCTCATATCCAAAGGATA+AGG | + | chr5.1:24848653-24848672 | None:intergenic | 40.0% | |
| CCTTATCCTTTGGATATGAG+AGG | - | chr5.1:24848650-24848669 | MS.gene44351:intron | 40.0% | |
| CTAGAAAAAATGCGAGCACT+TGG | - | chr5.1:24850928-24850947 | MS.gene44351:intron | 40.0% | |
| CTTACTTGTGCAGACTTGAT+AGG | + | chr5.1:24846803-24846822 | None:intergenic | 40.0% | |
| GAATTTGGACAATGGTTGCT+GGG | - | chr5.1:24849761-24849780 | MS.gene44351:intron | 40.0% | |
| GAGAACCAAACCTACTACAA+TGG | - | chr5.1:24850400-24850419 | MS.gene44351:intron | 40.0% | |
| GATCCAGGAGTCAAAGTTAA+AGG | - | chr5.1:24850852-24850871 | MS.gene44351:intron | 40.0% | |
| GGTTGCCTTGAATTTGGATT+TGG | - | chr5.1:24847722-24847741 | MS.gene44351:intron | 40.0% | |
| GTCTGTCAGAGACAATGTTA+AGG | + | chr5.1:24848009-24848028 | None:intergenic | 40.0% | |
| GTTACAGGTTCGCTATATGA+AGG | + | chr5.1:24849379-24849398 | None:intergenic | 40.0% | |
| TAGTGTCATCTACGCTGATA+CGG | - | chr5.1:24849792-24849811 | MS.gene44351:intron | 40.0% | |
| TATGGCATAAGCACTTGCAA+AGG | + | chr5.1:24847441-24847460 | None:intergenic | 40.0% | |
| TCCATGAATGAAAGACTCAG+TGG | + | chr5.1:24848868-24848887 | None:intergenic | 40.0% | |
| TGAATTTACCTCCAAGGGAA+GGG | + | chr5.1:24848270-24848289 | None:intergenic | 40.0% | |
| TGCAAAACCTCCTCTTCATT+GGG | + | chr5.1:24849971-24849990 | None:intergenic | 40.0% | |
| TTAATACAGGTAGGCGATCT+TGG | - | chr5.1:24849902-24849921 | MS.gene44351:CDS | 40.0% | |
| TTACACCAGATTCCTCTAAG+GGG | + | chr5.1:24849052-24849071 | None:intergenic | 40.0% | |
| TTCACTGTGTTGAACCCAAA+GGG | - | chr5.1:24849736-24849755 | MS.gene44351:intron | 40.0% | |
| TTGAATTTACCTCCAAGGGA+AGG | + | chr5.1:24848271-24848290 | None:intergenic | 40.0% | |
| TTGGGCCAAATCCAAATTCA+AGG | + | chr5.1:24847730-24847749 | None:intergenic | 40.0% | |
| ! | AAAAGGGCTCTTGTTATAGG+TGG | - | chr5.1:24850679-24850698 | MS.gene44351:intron | 40.0% |
| ! | AGAGTAACAAGAGCCCTTTT+TGG | + | chr5.1:24850595-24850614 | None:intergenic | 40.0% |
| ! | ATACCAGTCATTGTTGCTTC+AGG | + | chr5.1:24851105-24851124 | None:intergenic | 40.0% |
| ! | CTTTAAGAGACTATCTGGCA+AGG | - | chr5.1:24846772-24846791 | MS.gene44351:intron | 40.0% |
| ! | GAGCACTTTAAGAGACTATC+TGG | - | chr5.1:24846767-24846786 | MS.gene44351:CDS | 40.0% |
| ! | GAGTAACAAGAGCCCTTTTT+GGG | + | chr5.1:24850594-24850613 | None:intergenic | 40.0% |
| ! | TGATGGAAAGCCTTATCCTT+TGG | - | chr5.1:24848640-24848659 | MS.gene44351:intron | 40.0% |
| !! | TCATTTGTGAAAGAGCGTCT+TGG | - | chr5.1:24847756-24847775 | MS.gene44351:intron | 40.0% |
| !! | TCTAGACCCTTTTGGTAGTT+CGG | + | chr5.1:24850913-24850932 | None:intergenic | 40.0% |
| !! | TGGTTTGGTTGCCTTGAATT+TGG | - | chr5.1:24847716-24847735 | MS.gene44351:intron | 40.0% |
| !!! | GATGTTGCTGCTACTTTTAG+TGG | - | chr5.1:24850721-24850740 | MS.gene44351:intron | 40.0% |
| AAAAATGCGAGCACTTGGAG+AGG | - | chr5.1:24850933-24850952 | MS.gene44351:intron | 45.0% | |
| AAAGGGCCGAATTTGGACAA+TGG | - | chr5.1:24849753-24849772 | MS.gene44351:intron | 45.0% | |
| AAGGCTTATCCCACTAAGTG+GGG | + | chr5.1:24850171-24850190 | None:intergenic | 45.0% | |
| AATTCGGGCACTAAAGGAGA+AGG | - | chr5.1:24850747-24850766 | MS.gene44351:intron | 45.0% | |
| AGCTGCAAGACAAGGAACAA+TGG | - | chr5.1:24847634-24847653 | MS.gene44351:intron | 45.0% | |
| ATGCACGCTACAGTGAATCA+AGG | + | chr5.1:24847547-24847566 | None:intergenic | 45.0% | |
| ATTGTCCAAATTCGGCCCTT+TGG | + | chr5.1:24849754-24849773 | None:intergenic | 45.0% | |
| ATTTGGACAATGGTTGCTGG+GGG | - | chr5.1:24849763-24849782 | MS.gene44351:intron | 45.0% | |
| CAAGGCTTATCCCACTAAGT+GGG | + | chr5.1:24850172-24850191 | None:intergenic | 45.0% | |
| CGAATTTGGACAATGGTTGC+TGG | - | chr5.1:24849760-24849779 | MS.gene44351:intron | 45.0% | |
| CGCTTCCCAAATAACATGTC+AGG | + | chr5.1:24847687-24847706 | None:intergenic | 45.0% | |
| CTGCAAAACCTCCTCTTCAT+TGG | + | chr5.1:24849972-24849991 | None:intergenic | 45.0% | |
| GAAGCGTGGTAAAAGTGGTT+TGG | - | chr5.1:24847701-24847720 | MS.gene44351:intron | 45.0% | |
| GCACTCATAACCCTTCCAAA+TGG | + | chr5.1:24848846-24848865 | None:intergenic | 45.0% | |
| GCCACTGAGTCTTTCATTCA+TGG | - | chr5.1:24848864-24848883 | MS.gene44351:intron | 45.0% | |
| GTTAGGAGAGAATGTCTCTC+TGG | + | chr5.1:24849309-24849328 | None:intergenic | 45.0% | |
| GTTGAAATGGGTGGATGCAA+GGG | - | chr5.1:24847929-24847948 | MS.gene44351:CDS | 45.0% | |
| TAACCCTGATGGCCCAAAAA+GGG | - | chr5.1:24850579-24850598 | MS.gene44351:intron | 45.0% | |
| TGGCATAATTCGGGCACTAA+AGG | - | chr5.1:24850741-24850760 | MS.gene44351:intron | 45.0% | |
| TGTAAGGTTTGAAGGACGGA+CGG | + | chr5.1:24847812-24847831 | None:intergenic | 45.0% | |
| TTGCAGCTCAGTGAAATCAG+TGG | + | chr5.1:24847622-24847641 | None:intergenic | 45.0% | |
| TTGTCCAAATTCGGCCCTTT+GGG | + | chr5.1:24849753-24849772 | None:intergenic | 45.0% | |
| TTTCACTGAGCTGCAAGACA+AGG | - | chr5.1:24847626-24847645 | MS.gene44351:intron | 45.0% | |
| ! | CTGCCTTTAACTTTGACTCC+TGG | + | chr5.1:24850858-24850877 | None:intergenic | 45.0% |
| ! | CTGTTTTGCCACCATTGTAG+AGG | + | chr5.1:24849243-24849262 | None:intergenic | 45.0% |
| ! | GACATGTTATTTGGGAAGCG+TGG | - | chr5.1:24847687-24847706 | MS.gene44351:intron | 45.0% |
| ! | TGTGGTGCTAACGTGAACAA+CGG | - | chr5.1:24850071-24850090 | MS.gene44351:intron | 45.0% |
| ! | TTTGGGAAGCGTGGTAAAAG+TGG | - | chr5.1:24847696-24847715 | MS.gene44351:intron | 45.0% |
| !! | CTTGGCTTTGCAAATGAGCT+TGG | - | chr5.1:24849920-24849939 | MS.gene44351:CDS | 45.0% |
| !! | GAAAGAGCGTCTTGGTAAAG+AGG | - | chr5.1:24847764-24847783 | MS.gene44351:intron | 45.0% |
| !! | TTGTCGTATTGGTTGCAGGT+GGG | - | chr5.1:24848800-24848819 | MS.gene44351:intron | 45.0% |
| !!! | AAGAGCCCTTTTTTGGCCAT+CGG | + | chr5.1:24850671-24850690 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTGTAATTT+TGG | - | chr5.1:24850446-24850465 | MS.gene44351:intron | 5.0% |
| AAGGGAAGGGTTGCAACAAG+TGG | + | chr5.1:24848257-24848276 | None:intergenic | 50.0% | |
| ACACCCGCTTCACGCATTTA+GGG | + | chr5.1:24850238-24850257 | None:intergenic | 50.0% | |
| AGCTCGCCTCTCATATCCAA+AGG | + | chr5.1:24848659-24848678 | None:intergenic | 50.0% | |
| AGGGAAGGGTTGCAACAAGT+GGG | + | chr5.1:24848256-24848275 | None:intergenic | 50.0% | |
| ATGCACCTTTATGTGAGGCG+AGG | - | chr5.1:24850883-24850902 | MS.gene44351:intron | 50.0% | |
| CCAAGGCTTATCCCACTAAG+TGG | + | chr5.1:24850173-24850192 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGCCT+TGG | - | chr5.1:24850170-24850189 | MS.gene44351:CDS | 50.0% | |
| CGAGCACTTGGAGAGGAAAT+TGG | - | chr5.1:24850940-24850959 | MS.gene44351:intron | 50.0% | |
| CGAGCGTACAACCTCTACAA+TGG | - | chr5.1:24849229-24849248 | MS.gene44351:CDS | 50.0% | |
| CTAACCCTGATGGCCCAAAA+AGG | - | chr5.1:24850578-24850597 | MS.gene44351:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.1:24850167-24850186 | None:intergenic | 50.0% | |
| GATGTAAGAGACACTCCCGT+TGG | + | chr5.1:24848221-24848240 | None:intergenic | 50.0% | |
| GATTGCACAAGTACACCCAG+TGG | + | chr5.1:24848491-24848510 | None:intergenic | 50.0% | |
| GCGTACAACCTCTACAATGG+TGG | - | chr5.1:24849232-24849251 | MS.gene44351:CDS | 50.0% | |
| GGAAATTGGCATCCCGATTG+AGG | - | chr5.1:24850954-24850973 | MS.gene44351:intron | 50.0% | |
| GGACCTGAAGCAACAATGAC+TGG | - | chr5.1:24851099-24851118 | MS.gene44351:CDS | 50.0% | |
| GGAGAGAATGTCTCTCTGGT+AGG | + | chr5.1:24849305-24849324 | None:intergenic | 50.0% | |
| GGTTGAAATGGGTGGATGCA+AGG | - | chr5.1:24847928-24847947 | MS.gene44351:CDS | 50.0% | |
| GTCATCTACGCTGATACGGT+GGG | - | chr5.1:24849796-24849815 | MS.gene44351:CDS | 50.0% | |
| GTTCGCTATATGAAGGAGCG+AGG | + | chr5.1:24849372-24849391 | None:intergenic | 50.0% | |
| TAGTGGTGCACCCAATGAAG+AGG | - | chr5.1:24849958-24849977 | MS.gene44351:intron | 50.0% | |
| TGAACCCAAAGGGCCGAATT+TGG | - | chr5.1:24849746-24849765 | MS.gene44351:intron | 50.0% | |
| TGACCCCGATGGCCAAAAAA+GGG | - | chr5.1:24850663-24850682 | MS.gene44351:intron | 50.0% | |
| TGCACCTTTATGTGAGGCGA+GGG | - | chr5.1:24850884-24850903 | MS.gene44351:intron | 50.0% | |
| TGGTCCCTAAATGCGTGAAG+CGG | - | chr5.1:24850231-24850250 | MS.gene44351:CDS | 50.0% | |
| TGTCATCTACGCTGATACGG+TGG | - | chr5.1:24849795-24849814 | MS.gene44351:CDS | 50.0% | |
| TGTCTGACACCGACACATGT+CGG | + | chr5.1:24849531-24849550 | None:intergenic | 50.0% | |
| TGTGCAACTGCTAACCCTGA+TGG | - | chr5.1:24850568-24850587 | MS.gene44351:intron | 50.0% | |
| ! | ACAGGCGCACACACATTTTC+TGG | + | chr5.1:24848967-24848986 | None:intergenic | 50.0% |
| ! | ACCAGATTCCTCTAAGGGGT+AGG | + | chr5.1:24849048-24849067 | None:intergenic | 50.0% |
| ! | ACTTGTTGCAACCCTTCCCT+TGG | - | chr5.1:24848256-24848275 | MS.gene44351:intron | 50.0% |
| ! | AGATTCCTCTAAGGGGTAGG+GGG | + | chr5.1:24849045-24849064 | None:intergenic | 50.0% |
| ! | AGGGCTCTTGTTATAGGTGG+AGG | - | chr5.1:24850682-24850701 | MS.gene44351:intron | 50.0% |
| ! | CAGATTCCTCTAAGGGGTAG+GGG | + | chr5.1:24849046-24849065 | None:intergenic | 50.0% |
| ! | CCAGATTCCTCTAAGGGGTA+GGG | + | chr5.1:24849047-24849066 | None:intergenic | 50.0% |
| ! | GTGGTGCTAACGTGAACAAC+GGG | - | chr5.1:24850072-24850091 | MS.gene44351:intron | 50.0% |
| ! | TCAGGGTTAGCAGTTGCACA+TGG | + | chr5.1:24850568-24850587 | None:intergenic | 50.0% |
| ! | TCTGGTAGGAGCTTAGCTCT+GGG | + | chr5.1:24849291-24849310 | None:intergenic | 50.0% |
| !! | ACATGTGTCGGTGTCAGACA+CGG | - | chr5.1:24849531-24849550 | MS.gene44351:intron | 50.0% |
| !! | GACGTTGTCGTATTGGTTGC+AGG | - | chr5.1:24848796-24848815 | MS.gene44351:intron | 50.0% |
| !! | GTTGTCGTATTGGTTGCAGG+TGG | - | chr5.1:24848799-24848818 | MS.gene44351:intron | 50.0% |
| !! | TGTCGTATTGGTTGCAGGTG+GGG | - | chr5.1:24848801-24848820 | MS.gene44351:intron | 50.0% |
| !!! | AGAGCCCTTTTTTGGCCATC+GGG | + | chr5.1:24850670-24850689 | None:intergenic | 50.0% |
| !!! | AGGTGTGCTTTTTCCCACTC+TGG | - | chr5.1:24847784-24847803 | MS.gene44351:intron | 50.0% |
| ACCGACACATGTCGGACACT+AGG | + | chr5.1:24849523-24849542 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr5.1:24850159-24850178 | None:intergenic | 55.0% | |
| AGGGGGTCCGAACTACCAAA+AGG | - | chr5.1:24850903-24850922 | MS.gene44351:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.1:24850158-24850177 | MS.gene44351:CDS | 55.0% | |
| CACCTTTATGTGAGGCGAGG+GGG | - | chr5.1:24850886-24850905 | MS.gene44351:intron | 55.0% | |
| CCCTACCCCTTAGAGGAATC+TGG | - | chr5.1:24849044-24849063 | MS.gene44351:CDS | 55.0% | |
| CTCTGGTAGGAGCTTAGCTC+TGG | + | chr5.1:24849292-24849311 | None:intergenic | 55.0% | |
| CTGACCCCGATGGCCAAAAA+AGG | - | chr5.1:24850662-24850681 | MS.gene44351:intron | 55.0% | |
| GAATACCCCCTACCCCTTAG+AGG | - | chr5.1:24849037-24849056 | MS.gene44351:CDS | 55.0% | |
| GACACCCGCTTCACGCATTT+AGG | + | chr5.1:24850239-24850258 | None:intergenic | 55.0% | |
| GCACCTTTATGTGAGGCGAG+GGG | - | chr5.1:24850885-24850904 | MS.gene44351:intron | 55.0% | |
| GCCTAGTGTCCGACATGTGT+CGG | - | chr5.1:24849519-24849538 | MS.gene44351:intron | 55.0% | |
| GGGAAGGGTTGCAACAAGTG+GGG | + | chr5.1:24848255-24848274 | None:intergenic | 55.0% | |
| GGGGGTCCGAACTACCAAAA+GGG | - | chr5.1:24850904-24850923 | MS.gene44351:intron | 55.0% | |
| GGTCCCTAAATGCGTGAAGC+GGG | - | chr5.1:24850232-24850251 | MS.gene44351:CDS | 55.0% | |
| TGGTGCACCCAATGAAGAGG+AGG | - | chr5.1:24849961-24849980 | MS.gene44351:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.1:24850159-24850178 | MS.gene44351:CDS | 55.0% | |
| TGTTGCAACCCTTCCCTTGG+AGG | - | chr5.1:24848259-24848278 | MS.gene44351:intron | 55.0% | |
| !! | AGAGCCCTTTTTGGGCCATC+AGG | + | chr5.1:24850586-24850605 | None:intergenic | 55.0% |
| !! | GAGCCCTTTTTGGGCCATCA+GGG | + | chr5.1:24850585-24850604 | None:intergenic | 55.0% |
| !! | TAGGAGCTTAGCTCTGGGCA+GGG | + | chr5.1:24849286-24849305 | None:intergenic | 55.0% |
| !!! | GAGCCCTTTTTTGGCCATCG+GGG | + | chr5.1:24850669-24850688 | None:intergenic | 55.0% |
| GACCCCCTCGCCTCACATAA+AGG | + | chr5.1:24850891-24850910 | None:intergenic | 60.0% | |
| TGGACAATGGTTGCTGGGGG+AGG | - | chr5.1:24849766-24849785 | MS.gene44351:intron | 60.0% | |
| TGTGCAACTGCTGACCCCGA+TGG | - | chr5.1:24850652-24850671 | MS.gene44351:intron | 60.0% | |
| !! | AGGAGCTTAGCTCTGGGCAG+GGG | + | chr5.1:24849285-24849304 | None:intergenic | 60.0% |
| !! | GTAGGAGCTTAGCTCTGGGC+AGG | + | chr5.1:24849287-24849306 | None:intergenic | 60.0% |
| AAGGACGGACGGAGCCAGAG+TGG | + | chr5.1:24847801-24847820 | None:intergenic | 65.0% | |
| AGGACGGACGGAGCCAGAGT+GGG | + | chr5.1:24847800-24847819 | None:intergenic | 65.0% | |
| CGGGGTCAGCAGTTGCACAC+TGG | + | chr5.1:24850651-24850670 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 24846719 | 24851164 | 24846719 | ID=MS.gene44351 |
| chr5.1 | mRNA | 24846719 | 24851164 | 24846719 | ID=MS.gene44351.t1;Parent=MS.gene44351 |
| chr5.1 | exon | 24851066 | 24851164 | 24851066 | ID=MS.gene44351.t1.exon1;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24851066 | 24851164 | 24851066 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24850098 | 24850274 | 24850098 | ID=MS.gene44351.t1.exon2;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24850098 | 24850274 | 24850098 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24849793 | 24849954 | 24849793 | ID=MS.gene44351.t1.exon3;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24849793 | 24849954 | 24849793 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24849603 | 24849683 | 24849603 | ID=MS.gene44351.t1.exon4;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24849603 | 24849683 | 24849603 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24849428 | 24849479 | 24849428 | ID=MS.gene44351.t1.exon5;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24849428 | 24849479 | 24849428 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24849172 | 24849286 | 24849172 | ID=MS.gene44351.t1.exon6;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24849172 | 24849286 | 24849172 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24848984 | 24849065 | 24848984 | ID=MS.gene44351.t1.exon7;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24848984 | 24849065 | 24848984 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24848070 | 24848165 | 24848070 | ID=MS.gene44351.t1.exon8;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24848070 | 24848165 | 24848070 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24847871 | 24847972 | 24847871 | ID=MS.gene44351.t1.exon9;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24847871 | 24847972 | 24847871 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24847115 | 24847231 | 24847115 | ID=MS.gene44351.t1.exon10;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24847115 | 24847231 | 24847115 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24846908 | 24847024 | 24846908 | ID=MS.gene44351.t1.exon11;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24846908 | 24847024 | 24846908 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| chr5.1 | exon | 24846719 | 24846790 | 24846719 | ID=MS.gene44351.t1.exon12;Parent=MS.gene44351.t1 |
| chr5.1 | CDS | 24846719 | 24846790 | 24846719 | ID=cds.MS.gene44351.t1;Parent=MS.gene44351.t1 |
| Gene Sequence |
| Protein sequence |
