Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80887.t1 | XP_003618769.1 | 94.6 | 445 | 22 | 2 | 1 | 444 | 1 | 444 | 3.10E-205 | 724.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80887.t1 | Q9SS90 | 79.5 | 297 | 61 | 0 | 93 | 389 | 122 | 418 | 1.8e-137 | 490.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80887.t1 | G7KN55 | 94.6 | 445 | 22 | 2 | 1 | 444 | 1 | 444 | 2.2e-205 | 724.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene80887 | -0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene80887 | -0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene049627 | MS.gene80887 | -0.803175 | 3.95E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene80887 | -0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene80887 | -0.819349 | 1.22E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene80887 | -0.805269 | 1.45E-49 | -1.69E-46 |
| MS.gene050926 | MS.gene80887 | 0.813731 | 2.21E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene80887 | -0.808579 | 2.89E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene80887 | -0.832803 | 7.67E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene80887 | -0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene80887 | -0.800133 | 1.66E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene80887 | -0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene80887 | -0.822864 | 1.89E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene80887 | -0.83048 | 2.87E-55 | -1.69E-46 |
| MS.gene053549 | MS.gene80887 | 0.820852 | 5.51E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene80887 | -0.828148 | 1.06E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene80887 | -0.808433 | 3.10E-50 | -1.69E-46 |
| MS.gene054435 | MS.gene80887 | 0.816671 | 4.90E-52 | -1.69E-46 |
| MS.gene054447 | MS.gene80887 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene054927 | MS.gene80887 | -0.846003 | 2.85E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene80887 | -0.806244 | 9.04E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene80887 | -0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene80887 | 0.803427 | 3.50E-49 | -1.69E-46 |
| MS.gene056408 | MS.gene80887 | 0.820285 | 7.44E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene80887 | -0.82048 | 6.71E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene80887 | -0.823575 | 1.29E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene80887 | -0.812778 | 3.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80887.t1 | MTR_6g021730 | 97.079 | 445 | 11 | 2 | 1 | 444 | 1 | 444 | 0.0 | 879 |
| MS.gene80887.t1 | MTR_7g033100 | 68.919 | 444 | 97 | 7 | 1 | 444 | 1 | 403 | 0.0 | 570 |
| MS.gene80887.t1 | MTR_7g033100 | 69.005 | 442 | 96 | 7 | 1 | 442 | 1 | 401 | 0.0 | 567 |
| MS.gene80887.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 24 | 425 | 0.0 | 519 |
| MS.gene80887.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 27 | 428 | 0.0 | 519 |
| MS.gene80887.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 27 | 428 | 0.0 | 519 |
| MS.gene80887.t1 | MTR_8g089670 | 60.841 | 452 | 124 | 9 | 1 | 444 | 27 | 433 | 6.43e-179 | 509 |
| MS.gene80887.t1 | MTR_3g075530 | 64.908 | 379 | 106 | 5 | 67 | 444 | 41 | 393 | 4.21e-170 | 486 |
| MS.gene80887.t1 | MTR_3g096520 | 69.149 | 282 | 87 | 0 | 98 | 379 | 79 | 360 | 4.09e-145 | 422 |
| MS.gene80887.t1 | MTR_3g096520 | 69.149 | 282 | 87 | 0 | 98 | 379 | 96 | 377 | 1.40e-144 | 421 |
| MS.gene80887.t1 | MTR_3g096520 | 72.075 | 265 | 74 | 0 | 98 | 362 | 79 | 343 | 6.99e-144 | 419 |
| MS.gene80887.t1 | MTR_2g063857 | 65.505 | 287 | 99 | 0 | 93 | 379 | 61 | 347 | 1.73e-139 | 405 |
| MS.gene80887.t1 | MTR_2g063857 | 66.548 | 281 | 94 | 0 | 99 | 379 | 67 | 347 | 3.60e-139 | 406 |
| MS.gene80887.t1 | MTR_6g092100 | 66.429 | 280 | 92 | 1 | 100 | 379 | 2 | 279 | 1.61e-136 | 395 |
| MS.gene80887.t1 | MTR_6g092020 | 65.480 | 281 | 94 | 1 | 99 | 379 | 46 | 323 | 1.38e-134 | 394 |
| MS.gene80887.t1 | MTR_2g063843 | 65.125 | 281 | 95 | 1 | 99 | 379 | 59 | 336 | 1.99e-133 | 391 |
| MS.gene80887.t1 | MTR_8g447220 | 70.677 | 266 | 78 | 0 | 99 | 364 | 52 | 317 | 9.98e-133 | 386 |
| MS.gene80887.t1 | MTR_8g447220 | 68.327 | 281 | 89 | 0 | 100 | 380 | 53 | 333 | 1.21e-132 | 389 |
| MS.gene80887.t1 | MTR_2g063907 | 65.125 | 281 | 98 | 0 | 99 | 379 | 53 | 333 | 2.17e-132 | 389 |
| MS.gene80887.t1 | MTR_7g081160 | 62.270 | 326 | 93 | 7 | 123 | 441 | 10 | 312 | 1.28e-121 | 365 |
| MS.gene80887.t1 | MTR_7g081170 | 79.375 | 160 | 29 | 2 | 159 | 317 | 86 | 242 | 6.21e-88 | 269 |
| MS.gene80887.t1 | MTR_2g063877 | 52.252 | 111 | 40 | 3 | 179 | 289 | 3 | 100 | 1.35e-30 | 115 |
| MS.gene80887.t1 | MTR_8g096190 | 32.867 | 286 | 147 | 10 | 91 | 356 | 308 | 568 | 5.76e-24 | 105 |
| MS.gene80887.t1 | MTR_8g096190 | 33.333 | 261 | 136 | 9 | 91 | 331 | 308 | 550 | 2.96e-22 | 100 |
| MS.gene80887.t1 | MTR_8g096190 | 34.783 | 230 | 121 | 8 | 91 | 309 | 308 | 519 | 6.32e-22 | 99.0 |
| MS.gene80887.t1 | MTR_1g048160 | 30.000 | 250 | 132 | 7 | 127 | 356 | 334 | 560 | 2.44e-19 | 91.3 |
| MS.gene80887.t1 | MTR_7g114100 | 29.600 | 250 | 126 | 10 | 127 | 354 | 172 | 393 | 8.41e-18 | 85.9 |
| MS.gene80887.t1 | MTR_7g114130 | 28.112 | 249 | 134 | 8 | 127 | 354 | 338 | 562 | 4.02e-17 | 84.3 |
| MS.gene80887.t1 | MTR_7g081180 | 69.355 | 62 | 17 | 1 | 329 | 388 | 1 | 62 | 6.20e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80887.t1 | AT5G14420 | 70.474 | 359 | 82 | 3 | 58 | 416 | 67 | 401 | 3.61e-178 | 508 |
| MS.gene80887.t1 | AT5G14420 | 70.474 | 359 | 82 | 3 | 58 | 416 | 67 | 401 | 3.61e-178 | 508 |
| MS.gene80887.t1 | AT5G14420 | 70.474 | 359 | 82 | 3 | 58 | 416 | 67 | 401 | 3.61e-178 | 508 |
| MS.gene80887.t1 | AT5G14420 | 70.474 | 359 | 82 | 3 | 58 | 416 | 67 | 401 | 3.61e-178 | 508 |
| MS.gene80887.t1 | AT3G01650 | 74.164 | 329 | 65 | 3 | 56 | 379 | 95 | 408 | 8.76e-177 | 505 |
| MS.gene80887.t1 | AT3G01650 | 74.164 | 329 | 65 | 3 | 56 | 379 | 95 | 408 | 8.76e-177 | 505 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.02e-169 | 484 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.02e-169 | 484 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.02e-169 | 484 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.02e-169 | 484 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 81 | 399 | 1.29e-169 | 483 |
| MS.gene80887.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 81 | 399 | 2.59e-169 | 484 |
| MS.gene80887.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 96 | 361 | 6 | 271 | 5.52e-132 | 386 |
| MS.gene80887.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 96 | 361 | 6 | 271 | 5.52e-132 | 386 |
| MS.gene80887.t1 | AT1G79380 | 62.544 | 283 | 106 | 0 | 92 | 374 | 44 | 326 | 2.00e-131 | 386 |
| MS.gene80887.t1 | AT1G24545 | 53.211 | 109 | 13 | 1 | 142 | 250 | 46 | 116 | 5.17e-29 | 112 |
| MS.gene80887.t1 | AT5G61910 | 30.627 | 271 | 136 | 11 | 111 | 354 | 1087 | 1332 | 2.16e-21 | 98.6 |
| MS.gene80887.t1 | AT5G07300 | 30.216 | 278 | 144 | 11 | 103 | 354 | 314 | 567 | 5.57e-21 | 96.3 |
| MS.gene80887.t1 | AT5G61900 | 30.627 | 271 | 136 | 11 | 111 | 354 | 319 | 564 | 7.60e-20 | 92.8 |
| MS.gene80887.t1 | AT5G61900 | 30.627 | 271 | 136 | 11 | 111 | 354 | 319 | 564 | 7.60e-20 | 92.8 |
| MS.gene80887.t1 | AT1G08860 | 29.299 | 314 | 163 | 12 | 77 | 369 | 302 | 577 | 1.26e-19 | 92.4 |
Find 129 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCTGCTTCTTCTTCT+TGG | 0.074743 | 6.3:+15038797 | MS.gene80887:CDS |
| CCTCAAATTATTATCCTCTT+TGG | 0.233549 | 6.3:-15038749 | None:intergenic |
| GAACAGGCAATATCCATTAT+TGG | 0.248847 | 6.3:+15039621 | MS.gene80887:CDS |
| GTTCCTAATATTAAACTTGC+AGG | 0.276620 | 6.3:+15039889 | MS.gene80887:CDS |
| GAGTCTTCCAATCTTATTCT+TGG | 0.276878 | 6.3:+15039408 | MS.gene80887:CDS |
| TTTGGTACTTCAAAACCTTA+TGG | 0.290222 | 6.3:+15041143 | MS.gene80887:CDS |
| ATACCTGCAAGTTTAATATT+AGG | 0.295403 | 6.3:-15039892 | None:intergenic |
| TCTTATGGTTCGGCGTCTTT+TGG | 0.304213 | 6.3:+15041125 | MS.gene80887:CDS |
| GATAACTTGATTCCTTGTTT+TGG | 0.309163 | 6.3:+15039669 | MS.gene80887:CDS |
| AATGGATATTGCCTGTTCAT+AGG | 0.310815 | 6.3:-15039616 | None:intergenic |
| CTTTGCACCCATTGTTGAAA+TGG | 0.321773 | 6.3:+15040023 | MS.gene80887:CDS |
| CCTCCTCCTCCGCAAAACTA+TGG | 0.332154 | 6.3:+15038946 | MS.gene80887:CDS |
| GGAAATTCCTTCTCAGTATA+AGG | 0.336846 | 6.3:+15040920 | MS.gene80887:CDS |
| ATTTCCTCTTTCGATCATAT+TGG | 0.366765 | 6.3:+15040624 | MS.gene80887:CDS |
| TTCATATCCGGACCCTCATT+CGG | 0.368752 | 6.3:+15038822 | MS.gene80887:CDS |
| AACAGGCAATATCCATTATT+GGG | 0.375499 | 6.3:+15039622 | MS.gene80887:CDS |
| ATTTGCTCTCGCAGCATTGA+TGG | 0.382499 | 6.3:+15040899 | MS.gene80887:CDS |
| GGAGGTCGGGCATCATAATA+TGG | 0.386227 | 6.3:-15038925 | None:intergenic |
| ATCAATTCCAAGAATAAGAT+TGG | 0.395299 | 6.3:-15039415 | None:intergenic |
| CCCTCATTCGGGTTACGGTC+AGG | 0.396532 | 6.3:+15038834 | MS.gene80887:CDS |
| TGTTGTGAATCATAAGTATA+AGG | 0.399777 | 6.3:-15038868 | None:intergenic |
| TTCTTCTTGGAATTCATATC+CGG | 0.401443 | 6.3:+15038810 | MS.gene80887:CDS |
| TGGAGGCCAATACCATGTTT+TGG | 0.401526 | 6.3:+15040068 | MS.gene80887:CDS |
| CCATTGCAAAATCTTTCATC+TGG | 0.405804 | 6.3:-15039832 | None:intergenic |
| TCATATCCGGACCCTCATTC+GGG | 0.412709 | 6.3:+15038823 | MS.gene80887:CDS |
| AAAGATATGGCCTTCGGATG+TGG | 0.416356 | 6.3:+15041818 | MS.gene80887:intron |
| GCCCTCCCAACACCCTCTTA+TGG | 0.418141 | 6.3:+15041110 | MS.gene80887:CDS |
| GGCCTTCGGATGTGGGCATC+AGG | 0.422320 | 6.3:+15041826 | MS.gene80887:CDS |
| GTTAATGGGGCTCCTGCAGA+TGG | 0.427280 | 6.3:-15042201 | None:intergenic |
| TACTTCAAAACCTTATGGTT+CGG | 0.427815 | 6.3:+15041148 | MS.gene80887:CDS |
| TTGCGGAGGAGGAGGAGGTC+GGG | 0.429594 | 6.3:-15038938 | None:intergenic |
| CAACTTGTTTGACGACATCT+TGG | 0.431640 | 6.3:-15041244 | None:intergenic |
| GTCATGGCCATTTCAACAAT+GGG | 0.437074 | 6.3:-15040030 | None:intergenic |
| AAGTTCTACTTATGAAAATC+AGG | 0.441934 | 6.3:+15041289 | MS.gene80887:CDS |
| AAAAGACGCCGAACCATAAG+AGG | 0.442693 | 6.3:-15041123 | None:intergenic |
| TGGTGTTGGAGATGGACCTT+GGG | 0.447860 | 6.3:+15040648 | MS.gene80887:CDS |
| GCAATAGAGCTTAATCTACT+TGG | 0.451020 | 6.3:+15040945 | MS.gene80887:CDS |
| TCTTTAGTTTGTGAATTTCA+CGG | 0.452739 | 6.3:+15040833 | MS.gene80887:intron |
| CCGGACCCTCATTCGGGTTA+CGG | 0.455689 | 6.3:+15038829 | MS.gene80887:CDS |
| GTTGGGAGGGCGACTCTAGT+TGG | 0.462329 | 6.3:-15041098 | None:intergenic |
| ACCTGTCCACTCGTTGCTCT+TGG | 0.464264 | 6.3:-15039442 | None:intergenic |
| TTCAAACGTGTCCCATCTGC+AGG | 0.464621 | 6.3:+15042189 | MS.gene80887:CDS |
| TTATCACCAAAACATGGTAT+TGG | 0.464748 | 6.3:-15040074 | None:intergenic |
| ATGGATATTGCCTGTTCATA+GGG | 0.464896 | 6.3:-15039615 | None:intergenic |
| TTGGTGTTGGAGATGGACCT+TGG | 0.465147 | 6.3:+15040647 | MS.gene80887:CDS |
| CATTCCTCCTTCACGAAAAG+AGG | 0.466144 | 6.3:+15040872 | MS.gene80887:CDS |
| ATTGCCTGTTCATAGGGATT+CGG | 0.466672 | 6.3:-15039609 | None:intergenic |
| ACGATCAGAGAAAGTTAGAT+AGG | 0.468557 | 6.3:+15039007 | MS.gene80887:CDS |
| TCGATCATATTGGTTGGTGT+TGG | 0.471572 | 6.3:+15040634 | MS.gene80887:CDS |
| CCCAACACCCTCTTATGGTT+CGG | 0.473927 | 6.3:+15041115 | MS.gene80887:CDS |
| CCGAACCATAAGAGGGTGTT+GGG | 0.476496 | 6.3:-15041115 | None:intergenic |
| ACAATGGGTGCAAAGGATGT+AGG | 0.479320 | 6.3:-15040015 | None:intergenic |
| CCTCATTCGGGTTACGGTCA+GGG | 0.480031 | 6.3:+15038835 | MS.gene80887:CDS |
| GGCACTCTGCCACTAGTTTG+AGG | 0.484672 | 6.3:-15038976 | None:intergenic |
| CTTTCTCTGATCGTCATGAC+GGG | 0.486062 | 6.3:-15038998 | None:intergenic |
| TCATAATATGGTTGATAAGA+AGG | 0.493839 | 6.3:-15038913 | None:intergenic |
| TGGTCCGAATCCCTATGAAC+AGG | 0.495929 | 6.3:+15039605 | MS.gene80887:CDS |
| ACTGAAGCTCTTGCACGTGC+AGG | 0.500884 | 6.3:+15039381 | MS.gene80887:CDS |
| GGTGATAATTGCAGATGGCC+AGG | 0.501144 | 6.3:+15040089 | MS.gene80887:CDS |
| CCGTAACCCGAATGAGGGTC+CGG | 0.501311 | 6.3:-15038829 | None:intergenic |
| ACAGAAGATGCCGAACCATA+AGG | 0.504642 | 6.3:-15041158 | None:intergenic |
| CAATGGGTGCAAAGGATGTA+GGG | 0.505612 | 6.3:-15040014 | None:intergenic |
| TTTGCGGAGGAGGAGGAGGT+CGG | 0.506457 | 6.3:-15038939 | None:intergenic |
| TGGATGCCATTGTCGAGGCC+AGG | 0.508765 | 6.3:+15040521 | MS.gene80887:CDS |
| CCAACCAATATGATCGAAAG+AGG | 0.511733 | 6.3:-15040628 | None:intergenic |
| TGGTACGAAGGTGGGTAAGA+AGG | 0.512902 | 6.3:-15041224 | None:intergenic |
| ACATGGGAGGCTCAGTCCAC+AGG | 0.514845 | 6.3:+15040486 | MS.gene80887:CDS |
| AAGATATGGCCTTCGGATGT+GGG | 0.516272 | 6.3:+15041819 | MS.gene80887:intron |
| AAATTATCGAAGGCCCTAGC+TGG | 0.518132 | 6.3:-15040700 | None:intergenic |
| GATGTCGTCAAACAAGTTGT+TGG | 0.521060 | 6.3:+15041248 | MS.gene80887:CDS |
| CCTCTTTCGATCATATTGGT+TGG | 0.522830 | 6.3:+15040628 | MS.gene80887:CDS |
| TCCACGGTCTTCTGCTCCTG+TGG | 0.524421 | 6.3:-15040502 | None:intergenic |
| ACTTTCTCTGATCGTCATGA+CGG | 0.526481 | 6.3:-15038999 | None:intergenic |
| ATATTGGTTGGTGTTGGAGA+TGG | 0.526977 | 6.3:+15040640 | MS.gene80887:CDS |
| ACCAAGAGCAACGAGTGGAC+AGG | 0.529829 | 6.3:+15039441 | MS.gene80887:CDS |
| GGCCTCGACAATGGCATCCA+CGG | 0.533160 | 6.3:-15040518 | None:intergenic |
| CCAAAGAGGATAATAATTTG+AGG | 0.533593 | 6.3:+15038749 | MS.gene80887:CDS |
| AGAGGATAATAATTTGAGGC+GGG | 0.534520 | 6.3:+15038753 | MS.gene80887:CDS |
| TTGATGACAATATGCCAGCT+AGG | 0.536974 | 6.3:+15040686 | MS.gene80887:CDS |
| TGTCATGGCCATTTCAACAA+TGG | 0.538180 | 6.3:-15040031 | None:intergenic |
| CCCTGACCGTAACCCGAATG+AGG | 0.541654 | 6.3:-15038835 | None:intergenic |
| TAAGTAGAACTTGGGGCAGA+AGG | 0.541739 | 6.3:-15041278 | None:intergenic |
| AGCTTGCATCACATCGGGAA+TGG | 0.543450 | 6.3:+15039585 | MS.gene80887:CDS |
| ATCCATTATTGGGAAAACCT+TGG | 0.543835 | 6.3:+15039632 | MS.gene80887:CDS |
| GGCGACTCTAGTTGGAGCAT+TGG | 0.544251 | 6.3:-15041090 | None:intergenic |
| AGAAGTATTGACACTGAACA+TGG | 0.549006 | 6.3:+15040469 | MS.gene80887:CDS |
| CATTTCAACAATGGGTGCAA+AGG | 0.552326 | 6.3:-15040022 | None:intergenic |
| TGGACCTTGGGACATGATGA+AGG | 0.552430 | 6.3:+15040660 | MS.gene80887:CDS |
| GCCGAACCATAAGAGGGTGT+TGG | 0.555869 | 6.3:-15041116 | None:intergenic |
| ATCCTCATCAAATGCAGCCA+AGG | 0.564689 | 6.3:-15039649 | None:intergenic |
| CAATAGAGCTTAATCTACTT+GGG | 0.567533 | 6.3:+15040946 | MS.gene80887:CDS |
| ACGACATCTTGGTACGAAGG+TGG | 0.573039 | 6.3:-15041233 | None:intergenic |
| ACCATAAGAGGGTGTTGGGA+GGG | 0.576369 | 6.3:-15041111 | None:intergenic |
| TTATCACCTGGCCTCGACAA+TGG | 0.576692 | 6.3:-15040527 | None:intergenic |
| ATTGCAGCCTTATACTGAGA+AGG | 0.585676 | 6.3:-15040927 | None:intergenic |
| AACCTTGGCTGCATTTGATG+AGG | 0.588955 | 6.3:+15039647 | MS.gene80887:CDS |
| CGACATCTTGGTACGAAGGT+GGG | 0.589191 | 6.3:-15041232 | None:intergenic |
| GAATAAGATTGGAAGACTCA+AGG | 0.592639 | 6.3:-15039404 | None:intergenic |
| TGATGACAATATGCCAGCTA+GGG | 0.594660 | 6.3:+15040687 | MS.gene80887:CDS |
| AACTCCTTCATCATGTCCCA+AGG | 0.595718 | 6.3:-15040664 | None:intergenic |
| AACCATAAGAGGGTGTTGGG+AGG | 0.605542 | 6.3:-15041112 | None:intergenic |
| CCTGACCGTAACCCGAATGA+GGG | 0.607945 | 6.3:-15038834 | None:intergenic |
| GTTTACCTGAAAATTATCGA+AGG | 0.611679 | 6.3:-15040710 | None:intergenic |
| AATCTTAAACAGTAGTCGGA+AGG | 0.612928 | 6.3:+15041067 | MS.gene80887:intron |
| TACCTGATGCCCACATCCGA+AGG | 0.612987 | 6.3:-15041828 | None:intergenic |
| TGACAGACATGTTGCGAATG+CGG | 0.613284 | 6.3:+15042158 | MS.gene80887:intron |
| GGATATGAGCCTCAAACTAG+TGG | 0.613808 | 6.3:+15038967 | MS.gene80887:CDS |
| TTAATGGGGCTCCTGCAGAT+GGG | 0.618309 | 6.3:-15042200 | None:intergenic |
| GACCGTGGATGCCATTGTCG+AGG | 0.620761 | 6.3:+15040516 | MS.gene80887:CDS |
| CCATCCCCGAATCCAAAACA+AGG | 0.621252 | 6.3:-15039681 | None:intergenic |
| AAGAGGATAATAATTTGAGG+CGG | 0.623971 | 6.3:+15038752 | MS.gene80887:CDS |
| TCAAAACTAGCAGCATGAGA+AGG | 0.631711 | 6.3:-15041191 | None:intergenic |
| CTGCAATTATCACCAAAACA+TGG | 0.636469 | 6.3:-15040080 | None:intergenic |
| TTGACGACATCTTGGTACGA+AGG | 0.639680 | 6.3:-15041236 | None:intergenic |
| ACTCTGCTCAACGATTGTCA+TGG | 0.648042 | 6.3:-15040046 | None:intergenic |
| GGTTGTTGTGACTCGTGCGT+AGG | 0.650682 | 6.3:-15038892 | None:intergenic |
| ACAATCGTTGAGCAGAGTGG+AGG | 0.656204 | 6.3:+15040051 | MS.gene80887:CDS |
| ATGACAATCGTTGAGCAGAG+TGG | 0.657140 | 6.3:+15040048 | MS.gene80887:CDS |
| AGTTAGATAGGAAATACTCA+AGG | 0.660548 | 6.3:+15039019 | MS.gene80887:CDS |
| TGTGAATCATAAGTATAAGG+AGG | 0.665030 | 6.3:-15038865 | None:intergenic |
| GAATTGAGTTGATTGATGGG+GGG | 0.672957 | 6.3:+15038718 | None:intergenic |
| AAAGACGCCGAACCATAAGA+GGG | 0.674020 | 6.3:-15041122 | None:intergenic |
| ATTTCACCAAGAGCAACGAG+TGG | 0.683170 | 6.3:+15039436 | MS.gene80887:CDS |
| TCCACAGGAGCAGAAGACCG+TGG | 0.684259 | 6.3:+15040501 | MS.gene80887:CDS |
| GAAGTATTGACACTGAACAT+GGG | 0.689699 | 6.3:+15040470 | MS.gene80887:CDS |
| GTATTGACACTGAACATGGG+AGG | 0.694374 | 6.3:+15040473 | MS.gene80887:CDS |
| TTTCTCTGATCGTCATGACG+GGG | 0.719608 | 6.3:-15038997 | None:intergenic |
| CATTCGGGTTACGGTCAGGG+CGG | 0.722179 | 6.3:+15038838 | MS.gene80887:CDS |
| TAATTACAACTCCATAGACG+AGG | 0.735332 | 6.3:+15039050 | MS.gene80887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTATATGTTTAATATA+GGG | + | chr6.3:15041681-15041700 | MS.gene80887:intron | 10.0% |
| !! | AAACTATAAATGTATAGATA+TGG | - | chr6.3:15039472-15039491 | None:intergenic | 15.0% |
| !! | AATAGAGTATATAACTAAAT+TGG | - | chr6.3:15042070-15042089 | None:intergenic | 15.0% |
| !! | ACTTGTATTTATAATTACAA+TGG | + | chr6.3:15040283-15040302 | MS.gene80887:intron | 15.0% |
| !! | AGATAAAAACTATACAAAAT+CGG | - | chr6.3:15039094-15039113 | None:intergenic | 15.0% |
| !! | CTATTTAATATATATCTGAA+AGG | + | chr6.3:15041582-15041601 | MS.gene80887:intron | 15.0% |
| !! | CTTTCAGATATATATTAAAT+AGG | - | chr6.3:15041584-15041603 | None:intergenic | 15.0% |
| !!! | ATTTGCATAATTTTATTGTT+CGG | + | chr6.3:15041646-15041665 | MS.gene80887:intron | 15.0% |
| !!! | GCATTTTATATGTTTAATAT+AGG | + | chr6.3:15041680-15041699 | MS.gene80887:intron | 15.0% |
| !!! | GTTAAAATGTTCTAAAATTT+TGG | + | chr6.3:15040771-15040790 | MS.gene80887:intron | 15.0% |
| !!! | TTATTCATCTTTTTTCTTTT+GGG | + | chr6.3:15039280-15039299 | MS.gene80887:intron | 15.0% |
| !! | AAAAGAGATAATAATACTGA+AGG | - | chr6.3:15040990-15041009 | None:intergenic | 20.0% |
| !! | AGCAATAAAAAATACAAATC+TGG | + | chr6.3:15041919-15041938 | MS.gene80887:intron | 20.0% |
| !! | ATGAATAGAAAGATAAATGA+AGG | - | chr6.3:15040191-15040210 | None:intergenic | 20.0% |
| !! | ATTAAACATATAAAATGCAC+CGG | - | chr6.3:15041678-15041697 | None:intergenic | 20.0% |
| !! | TATTAATCTTAAACAGTAGT+CGG | + | chr6.3:15041063-15041082 | MS.gene80887:intron | 20.0% |
| !! | TTATACTTATATCTCATTAC+AGG | + | chr6.3:15039356-15039375 | MS.gene80887:intron | 20.0% |
| !! | TTATCTTTCTATTCATTCAA+AGG | + | chr6.3:15040195-15040214 | MS.gene80887:intron | 20.0% |
| !!! | AATCTGGTTTATAAGTATTT+TGG | + | chr6.3:15041935-15041954 | MS.gene80887:intron | 20.0% |
| !!! | AATTTGTTAATTTTGCTGTA+AGG | - | chr6.3:15041754-15041773 | None:intergenic | 20.0% |
| !!! | CTTATTCATCTTTTTTCTTT+TGG | + | chr6.3:15039279-15039298 | MS.gene80887:intron | 20.0% |
| !!! | GTATTGATATTTATGTGATT+TGG | + | chr6.3:15039192-15039211 | MS.gene80887:intron | 20.0% |
| !!! | TATTGTAGAATTTTTGTTTG+TGG | + | chr6.3:15039733-15039752 | MS.gene80887:intron | 20.0% |
| !!! | TTTGTATTTTTTATTGCTCA+TGG | - | chr6.3:15041917-15041936 | None:intergenic | 20.0% |
| ! | AAGTTCTACTTATGAAAATC+AGG | + | chr6.3:15041289-15041308 | MS.gene80887:CDS | 25.0% |
| ! | ATACCTGCAAGTTTAATATT+AGG | - | chr6.3:15039895-15039914 | None:intergenic | 25.0% |
| ! | ATCAATTCCAAGAATAAGAT+TGG | - | chr6.3:15039418-15039437 | None:intergenic | 25.0% |
| ! | ATTCATCATCTGAATTATTG+TGG | + | chr6.3:15040795-15040814 | MS.gene80887:intron | 25.0% |
| ! | ATTGTTTACCTCAGAAATAT+GGG | - | chr6.3:15042104-15042123 | None:intergenic | 25.0% |
| ! | CATTCAAAGGAAAAAGTAAT+TGG | + | chr6.3:15040208-15040227 | MS.gene80887:intron | 25.0% |
| ! | CTTAATTCTAACAATGTAGA+TGG | + | chr6.3:15040425-15040444 | MS.gene80887:intron | 25.0% |
| ! | TATTGTTTACCTCAGAAATA+TGG | - | chr6.3:15042105-15042124 | None:intergenic | 25.0% |
| ! | TATTGTTTAGGAATATTGAC+AGG | + | chr6.3:15040398-15040417 | MS.gene80887:intron | 25.0% |
| ! | TGTTGTGAATCATAAGTATA+AGG | - | chr6.3:15038871-15038890 | None:intergenic | 25.0% |
| ! | TTTAAAGACCAAAAAAGTCT+TGG | + | chr6.3:15042023-15042042 | MS.gene80887:intron | 25.0% |
| ! | TTTCATTGGTCAAACATATA+GGG | - | chr6.3:15041799-15041818 | None:intergenic | 25.0% |
| ! | TTTGACCAATGAAAAAGATA+TGG | + | chr6.3:15041805-15041824 | MS.gene80887:intron | 25.0% |
| !! | ATTTTCATAAGTAGAACTTG+GGG | - | chr6.3:15041288-15041307 | None:intergenic | 25.0% |
| !! | GATTTTCATAAGTAGAACTT+GGG | - | chr6.3:15041289-15041308 | None:intergenic | 25.0% |
| !! | TGATTTTCATAAGTAGAACT+TGG | - | chr6.3:15041290-15041309 | None:intergenic | 25.0% |
| !! | TTTTCATTGGTCAAACATAT+AGG | - | chr6.3:15041800-15041819 | None:intergenic | 25.0% |
| !!! | AAATAACACCAAGACTTTTT+TGG | - | chr6.3:15042034-15042053 | None:intergenic | 25.0% |
| !!! | AATACTTATGTTTTAACGTC+AGG | + | chr6.3:15039991-15040010 | MS.gene80887:intron | 25.0% |
| !!! | AATAGGTCTGTGTTTTTTTA+GGG | - | chr6.3:15041891-15041910 | None:intergenic | 25.0% |
| !!! | TCATAATATGGTTGATAAGA+AGG | - | chr6.3:15038916-15038935 | None:intergenic | 25.0% |
| !!! | TCTTTAGTTTGTGAATTTCA+CGG | + | chr6.3:15040833-15040852 | MS.gene80887:intron | 25.0% |
| !!! | TGGTGTTATTTATTTAGCAT+GGG | + | chr6.3:15042043-15042062 | MS.gene80887:intron | 25.0% |
| !!! | TTGGTGTTATTTATTTAGCA+TGG | + | chr6.3:15042042-15042061 | MS.gene80887:intron | 25.0% |
| AAAGATAACCCTAAACATAC+TGG | - | chr6.3:15040130-15040149 | None:intergenic | 30.0% | |
| AACAGGCAATATCCATTATT+GGG | + | chr6.3:15039622-15039641 | MS.gene80887:CDS | 30.0% | |
| AAGAGGATAATAATTTGAGG+CGG | + | chr6.3:15038752-15038771 | MS.gene80887:CDS | 30.0% | |
| AAGATAACCCTAAACATACT+GGG | - | chr6.3:15040129-15040148 | None:intergenic | 30.0% | |
| AATGAAAAAGATATGGCCTT+CGG | + | chr6.3:15041812-15041831 | MS.gene80887:intron | 30.0% | |
| AGACAAGATGTTCGTAAAAA+CGG | - | chr6.3:15040580-15040599 | None:intergenic | 30.0% | |
| AGATGAATAAGTAGCATTGT+CGG | - | chr6.3:15039270-15039289 | None:intergenic | 30.0% | |
| AGTTAGATAGGAAATACTCA+AGG | + | chr6.3:15039019-15039038 | MS.gene80887:CDS | 30.0% | |
| ATTATGCAAATAATACAGCC+TGG | - | chr6.3:15041637-15041656 | None:intergenic | 30.0% | |
| ATTCTTTACCCAGTATGTTT+AGG | + | chr6.3:15040118-15040137 | MS.gene80887:intron | 30.0% | |
| ATTTCCTCTTTCGATCATAT+TGG | + | chr6.3:15040624-15040643 | MS.gene80887:CDS | 30.0% | |
| CAATAGAGCTTAATCTACTT+GGG | + | chr6.3:15040946-15040965 | MS.gene80887:CDS | 30.0% | |
| CCAAAGAGGATAATAATTTG+AGG | + | chr6.3:15038749-15038768 | MS.gene80887:CDS | 30.0% | |
| CCTCAAATTATTATCCTCTT+TGG | - | chr6.3:15038752-15038771 | None:intergenic | 30.0% | |
| CTAAAAAAACACAGACCTAT+TGG | + | chr6.3:15041890-15041909 | MS.gene80887:intron | 30.0% | |
| GAAGAAAAAGATATCAGCAT+GGG | - | chr6.3:15039137-15039156 | None:intergenic | 30.0% | |
| GGAATATTAGCAAGTAATGA+AGG | + | chr6.3:15040369-15040388 | MS.gene80887:intron | 30.0% | |
| GTAATCTAATTAGTCAACTG+AGG | - | chr6.3:15041467-15041486 | None:intergenic | 30.0% | |
| GTTCCTAATATTAAACTTGC+AGG | + | chr6.3:15039889-15039908 | MS.gene80887:CDS | 30.0% | |
| GTTTACCTGAAAATTATCGA+AGG | - | chr6.3:15040713-15040732 | None:intergenic | 30.0% | |
| TACTTCAAAACCTTATGGTT+CGG | + | chr6.3:15041148-15041167 | MS.gene80887:CDS | 30.0% | |
| TAGGTTAGTGCTAATCAATT+GGG | - | chr6.3:15040332-15040351 | None:intergenic | 30.0% | |
| TATAGGGATTGAGTATGAAA+TGG | + | chr6.3:15041697-15041716 | MS.gene80887:intron | 30.0% | |
| TGAAGGAAGTTGTATTGTTT+AGG | + | chr6.3:15040386-15040405 | MS.gene80887:intron | 30.0% | |
| TGTGAATCATAAGTATAAGG+AGG | - | chr6.3:15038868-15038887 | None:intergenic | 30.0% | |
| TTATCACCAAAACATGGTAT+TGG | - | chr6.3:15040077-15040096 | None:intergenic | 30.0% | |
| TTCTTCTTGGAATTCATATC+CGG | + | chr6.3:15038810-15038829 | MS.gene80887:CDS | 30.0% | |
| TTCTTTACCCAGTATGTTTA+GGG | + | chr6.3:15040119-15040138 | MS.gene80887:intron | 30.0% | |
| TTTGGTACTTCAAAACCTTA+TGG | + | chr6.3:15041143-15041162 | MS.gene80887:CDS | 30.0% | |
| ! | AATTTCTTCCCATATTTCTG+AGG | + | chr6.3:15042093-15042112 | MS.gene80887:intron | 30.0% |
| ! | ATTCACATCTGAGATTCTTA+AGG | + | chr6.3:15041976-15041995 | MS.gene80887:intron | 30.0% |
| ! | GATATTTATGTGATTTGGCA+TGG | + | chr6.3:15039197-15039216 | MS.gene80887:intron | 30.0% |
| ! | GTGGTTTAAAATGTGCTAAT+GGG | + | chr6.3:15039752-15039771 | MS.gene80887:intron | 30.0% |
| ! | TCTGAGGTAAACAATAGATT+GGG | + | chr6.3:15042109-15042128 | MS.gene80887:intron | 30.0% |
| ! | TGTGGTTTAAAATGTGCTAA+TGG | + | chr6.3:15039751-15039770 | MS.gene80887:intron | 30.0% |
| !! | CATTATGCTGCATAGTTTTA+TGG | + | chr6.3:15041549-15041568 | MS.gene80887:intron | 30.0% |
| !! | GATAACTTGATTCCTTGTTT+TGG | + | chr6.3:15039669-15039688 | MS.gene80887:CDS | 30.0% |
| !! | TGTAGAGCTTTAAATTCATC+AGG | - | chr6.3:15039159-15039178 | None:intergenic | 30.0% |
| !! | TTCTGAGGTAAACAATAGAT+TGG | + | chr6.3:15042108-15042127 | MS.gene80887:intron | 30.0% |
| !!! | ATAGGTCTGTGTTTTTTTAG+GGG | - | chr6.3:15041890-15041909 | None:intergenic | 30.0% |
| !!! | CAATAGGTCTGTGTTTTTTT+AGG | - | chr6.3:15041892-15041911 | None:intergenic | 30.0% |
| !!! | GATTTGAAGAAGTTTTGAGT+CGG | + | chr6.3:15039854-15039873 | MS.gene80887:CDS | 30.0% |
| !!! | TTGATTCCTTGTTTTGGATT+CGG | + | chr6.3:15039675-15039694 | MS.gene80887:CDS | 30.0% |
| AATAATACAGCCTGGATGAA+TGG | - | chr6.3:15041629-15041648 | None:intergenic | 35.0% | |
| AATCTTAAACAGTAGTCGGA+AGG | + | chr6.3:15041067-15041086 | MS.gene80887:intron | 35.0% | |
| AATGGATATTGCCTGTTCAT+AGG | - | chr6.3:15039619-15039638 | None:intergenic | 35.0% | |
| ACGATCAGAGAAAGTTAGAT+AGG | + | chr6.3:15039007-15039026 | MS.gene80887:CDS | 35.0% | |
| AGAAAAAGCTTGCATCACAT+CGG | + | chr6.3:15039579-15039598 | MS.gene80887:CDS | 35.0% | |
| AGACAGAGTATATGCTTTGT+TGG | - | chr6.3:15041494-15041513 | None:intergenic | 35.0% | |
| AGCATATACTCTGTCTAATG+TGG | + | chr6.3:15041498-15041517 | MS.gene80887:intron | 35.0% | |
| ATAAGAGCAACAAGACAAGT+AGG | - | chr6.3:15039924-15039943 | None:intergenic | 35.0% | |
| ATCCATTATTGGGAAAACCT+TGG | + | chr6.3:15039632-15039651 | MS.gene80887:CDS | 35.0% | |
| ATGGATATTGCCTGTTCATA+GGG | - | chr6.3:15039618-15039637 | None:intergenic | 35.0% | |
| CAATTGATTAGCACTAACCT+AGG | + | chr6.3:15040331-15040350 | MS.gene80887:intron | 35.0% | |
| CCATTGCAAAATCTTTCATC+TGG | - | chr6.3:15039835-15039854 | None:intergenic | 35.0% | |
| CTAGGTTAGTGCTAATCAAT+TGG | - | chr6.3:15040333-15040352 | None:intergenic | 35.0% | |
| CTGCAATTATCACCAAAACA+TGG | - | chr6.3:15040083-15040102 | None:intergenic | 35.0% | |
| GAACAGGCAATATCCATTAT+TGG | + | chr6.3:15039621-15039640 | MS.gene80887:CDS | 35.0% | |
| GAATAAGATTGGAAGACTCA+AGG | - | chr6.3:15039407-15039426 | None:intergenic | 35.0% | |
| GAGTCTTCCAATCTTATTCT+TGG | + | chr6.3:15039408-15039427 | MS.gene80887:CDS | 35.0% | |
| GCAATAGAGCTTAATCTACT+TGG | + | chr6.3:15040945-15040964 | MS.gene80887:CDS | 35.0% | |
| GGAAATTCCTTCTCAGTATA+AGG | + | chr6.3:15040920-15040939 | MS.gene80887:CDS | 35.0% | |
| GGAAGAAAAAGATATCAGCA+TGG | - | chr6.3:15039138-15039157 | None:intergenic | 35.0% | |
| TAATTACAACTCCATAGACG+AGG | + | chr6.3:15039050-15039069 | MS.gene80887:CDS | 35.0% | |
| TCAAGAGCAAATGTCCTAAT+TGG | + | chr6.3:15041863-15041882 | MS.gene80887:intron | 35.0% | |
| TGGGTAAAGAATAGAATACC+TGG | - | chr6.3:15040110-15040129 | None:intergenic | 35.0% | |
| TTGATGCTGCCATAATATCA+CGG | - | chr6.3:15039783-15039802 | None:intergenic | 35.0% | |
| TTTATTGCTCATGGACCAAT+AGG | - | chr6.3:15041908-15041927 | None:intergenic | 35.0% | |
| ! | AGAGGATAATAATTTGAGGC+GGG | + | chr6.3:15038753-15038772 | MS.gene80887:CDS | 35.0% |
| ! | CCAGATGAAAGATTTTGCAA+TGG | + | chr6.3:15039832-15039851 | MS.gene80887:CDS | 35.0% |
| ! | TGCTTTTCCTTGTAGCTTTT+GGG | + | chr6.3:15041427-15041446 | MS.gene80887:intron | 35.0% |
| ! | TTTTATTGTTCGGTTGCTTC+CGG | + | chr6.3:15041656-15041675 | MS.gene80887:intron | 35.0% |
| !! | ACAATGTAGATGGCTTTGTT+TGG | + | chr6.3:15040435-15040454 | MS.gene80887:intron | 35.0% |
| !! | AGAAGTATTGACACTGAACA+TGG | + | chr6.3:15040469-15040488 | MS.gene80887:CDS | 35.0% |
| !! | GAAGGCCATATCTTTTTCAT+TGG | - | chr6.3:15041813-15041832 | None:intergenic | 35.0% |
| !! | GAAGTATTGACACTGAACAT+GGG | + | chr6.3:15040470-15040489 | MS.gene80887:CDS | 35.0% |
| !! | GTTTTGGTGATAATTGCAGA+TGG | + | chr6.3:15040084-15040103 | MS.gene80887:CDS | 35.0% |
| !! | TTGCTTTTCCTTGTAGCTTT+TGG | + | chr6.3:15041426-15041445 | MS.gene80887:intron | 35.0% |
| !!! | AAGAAGTTTTGAGTCGGTAT+AGG | + | chr6.3:15039860-15039879 | MS.gene80887:CDS | 35.0% |
| !!! | AGAAGTTTTGAGTCGGTATA+GGG | + | chr6.3:15039861-15039880 | MS.gene80887:CDS | 35.0% |
| !!! | AGCATTTTTTACCTCGTCTA+TGG | - | chr6.3:15039064-15039083 | None:intergenic | 35.0% |
| !!! | GTTTTTTTAGGGGACCAATT+AGG | - | chr6.3:15041880-15041899 | None:intergenic | 35.0% |
| !!! | TGATTCCTTGTTTTGGATTC+GGG | + | chr6.3:15039676-15039695 | MS.gene80887:CDS | 35.0% |
| AACTTTGCAGCATTATCACC+TGG | - | chr6.3:15040542-15040561 | None:intergenic | 40.0% | |
| ACTTTCTCTGATCGTCATGA+CGG | - | chr6.3:15039002-15039021 | None:intergenic | 40.0% | |
| ATGAAGGAGAAAGCAAGAAG+CGG | - | chr6.3:15040175-15040194 | None:intergenic | 40.0% | |
| ATTGCCTGTTCATAGGGATT+CGG | - | chr6.3:15039612-15039631 | None:intergenic | 40.0% | |
| CATTTCAACAATGGGTGCAA+AGG | - | chr6.3:15040025-15040044 | None:intergenic | 40.0% | |
| CCAACCAATATGATCGAAAG+AGG | - | chr6.3:15040631-15040650 | None:intergenic | 40.0% | |
| CCTAGACTATACAGTTTCCT+AGG | - | chr6.3:15040351-15040370 | None:intergenic | 40.0% | |
| CCTAGGAAACTGTATAGTCT+AGG | + | chr6.3:15040348-15040367 | MS.gene80887:intron | 40.0% | |
| CCTCTTTCGATCATATTGGT+TGG | + | chr6.3:15040628-15040647 | MS.gene80887:CDS | 40.0% | |
| CTTTGCACCCATTGTTGAAA+TGG | + | chr6.3:15040023-15040042 | MS.gene80887:CDS | 40.0% | |
| GAAAAAGCTTGCATCACATC+GGG | + | chr6.3:15039580-15039599 | MS.gene80887:CDS | 40.0% | |
| GATGTCGTCAAACAAGTTGT+TGG | + | chr6.3:15041248-15041267 | MS.gene80887:CDS | 40.0% | |
| GTCATGGCCATTTCAACAAT+GGG | - | chr6.3:15040033-15040052 | None:intergenic | 40.0% | |
| GTCTAATGTGGAGAGATGAA+TGG | + | chr6.3:15041510-15041529 | MS.gene80887:intron | 40.0% | |
| TCAAAACTAGCAGCATGAGA+AGG | - | chr6.3:15041194-15041213 | None:intergenic | 40.0% | |
| TGATGACAATATGCCAGCTA+GGG | + | chr6.3:15040687-15040706 | MS.gene80887:CDS | 40.0% | |
| TGGGCATTACCGTGATATTA+TGG | + | chr6.3:15039771-15039790 | MS.gene80887:intron | 40.0% | |
| TGTCATGGCCATTTCAACAA+TGG | - | chr6.3:15040034-15040053 | None:intergenic | 40.0% | |
| TTGAGCAAATCAGAGAAGAC+TGG | + | chr6.3:15040148-15040167 | MS.gene80887:intron | 40.0% | |
| ! | AGCCAACATCATTTTCAACC+AGG | - | chr6.3:15039223-15039242 | None:intergenic | 40.0% |
| ! | AGCCAAGGTTTTCCCAATAA+TGG | - | chr6.3:15039637-15039656 | None:intergenic | 40.0% |
| ! | ATTGCAGCCTTATACTGAGA+AGG | - | chr6.3:15040930-15040949 | None:intergenic | 40.0% |
| ! | CAACTTGTTTGACGACATCT+TGG | - | chr6.3:15041247-15041266 | None:intergenic | 40.0% |
| ! | GCTTTTCCTTGTAGCTTTTG+GGG | + | chr6.3:15041428-15041447 | MS.gene80887:intron | 40.0% |
| ! | TAGGGCCTTCGATAATTTTC+AGG | + | chr6.3:15040705-15040724 | MS.gene80887:CDS | 40.0% |
| ! | TCGATCATATTGGTTGGTGT+TGG | + | chr6.3:15040634-15040653 | MS.gene80887:CDS | 40.0% |
| ! | TTGATGACAATATGCCAGCT+AGG | + | chr6.3:15040686-15040705 | MS.gene80887:CDS | 40.0% |
| !! | ATATTGGTTGGTGTTGGAGA+TGG | + | chr6.3:15040640-15040659 | MS.gene80887:CDS | 40.0% |
| !! | GGCTCATATCCATAGTTTTG+CGG | - | chr6.3:15038958-15038977 | None:intergenic | 40.0% |
| !! | TCATATCCATAGTTTTGCGG+AGG | - | chr6.3:15038955-15038974 | None:intergenic | 40.0% |
| !!! | CAGCATGAGAAGGTTTTGAA+GGG | - | chr6.3:15041184-15041203 | None:intergenic | 40.0% |
| !!! | GATTCCTTGTTTTGGATTCG+GGG | + | chr6.3:15039677-15039696 | MS.gene80887:CDS | 40.0% |
| AAAAGACGCCGAACCATAAG+AGG | - | chr6.3:15041126-15041145 | None:intergenic | 45.0% | |
| AAAGACGCCGAACCATAAGA+GGG | - | chr6.3:15041125-15041144 | None:intergenic | 45.0% | |
| AAAGATATGGCCTTCGGATG+TGG | + | chr6.3:15041818-15041837 | MS.gene80887:intron | 45.0% | |
| AAATTATCGAAGGCCCTAGC+TGG | - | chr6.3:15040703-15040722 | None:intergenic | 45.0% | |
| AACCTTGGCTGCATTTGATG+AGG | + | chr6.3:15039647-15039666 | MS.gene80887:CDS | 45.0% | |
| AACTCCTTCATCATGTCCCA+AGG | - | chr6.3:15040667-15040686 | None:intergenic | 45.0% | |
| AAGATATGGCCTTCGGATGT+GGG | + | chr6.3:15041819-15041838 | MS.gene80887:intron | 45.0% | |
| AAGTAGCATTGTCGGTGAGA+AGG | - | chr6.3:15039262-15039281 | None:intergenic | 45.0% | |
| ACAATGGGTGCAAAGGATGT+AGG | - | chr6.3:15040018-15040037 | None:intergenic | 45.0% | |
| ACAGAAGATGCCGAACCATA+AGG | - | chr6.3:15041161-15041180 | None:intergenic | 45.0% | |
| ACTCTGCTCAACGATTGTCA+TGG | - | chr6.3:15040049-15040068 | None:intergenic | 45.0% | |
| AGATAGCCCCAAAAGCTACA+AGG | - | chr6.3:15041437-15041456 | None:intergenic | 45.0% | |
| ATCCTCATCAAATGCAGCCA+AGG | - | chr6.3:15039652-15039671 | None:intergenic | 45.0% | |
| ATGACAATCGTTGAGCAGAG+TGG | + | chr6.3:15040048-15040067 | MS.gene80887:CDS | 45.0% | |
| ATTTCACCAAGAGCAACGAG+TGG | + | chr6.3:15039436-15039455 | MS.gene80887:CDS | 45.0% | |
| CAATGGGTGCAAAGGATGTA+GGG | - | chr6.3:15040017-15040036 | None:intergenic | 45.0% | |
| CATTCCTCCTTCACGAAAAG+AGG | + | chr6.3:15040872-15040891 | MS.gene80887:CDS | 45.0% | |
| CTGCTTCTGCTTCTTCTTCT+TGG | + | chr6.3:15038797-15038816 | MS.gene80887:CDS | 45.0% | |
| CTTTCTCTGATCGTCATGAC+GGG | - | chr6.3:15039001-15039020 | None:intergenic | 45.0% | |
| GGATATGAGCCTCAAACTAG+TGG | + | chr6.3:15038967-15038986 | MS.gene80887:CDS | 45.0% | |
| GGCCTGGTTGAAAATGATGT+TGG | + | chr6.3:15039218-15039237 | MS.gene80887:intron | 45.0% | |
| TAAGTAGAACTTGGGGCAGA+AGG | - | chr6.3:15041281-15041300 | None:intergenic | 45.0% | |
| TGACAGACATGTTGCGAATG+CGG | + | chr6.3:15042158-15042177 | MS.gene80887:intron | 45.0% | |
| TTCATATCCGGACCCTCATT+CGG | + | chr6.3:15038822-15038841 | MS.gene80887:CDS | 45.0% | |
| TTGACGACATCTTGGTACGA+AGG | - | chr6.3:15041239-15041258 | None:intergenic | 45.0% | |
| TTGTCAACTGCCATTCATCC+AGG | + | chr6.3:15041616-15041635 | MS.gene80887:intron | 45.0% | |
| TTTCTCTGATCGTCATGACG+GGG | - | chr6.3:15039000-15039019 | None:intergenic | 45.0% | |
| ! | AATGCTGCCTCTTTTCGTGA+AGG | - | chr6.3:15040882-15040901 | None:intergenic | 45.0% |
| ! | ATTTGCTCTCGCAGCATTGA+TGG | + | chr6.3:15040899-15040918 | MS.gene80887:CDS | 45.0% |
| ! | GTATTGACACTGAACATGGG+AGG | + | chr6.3:15040473-15040492 | MS.gene80887:CDS | 45.0% |
| ! | TGGAGGCCAATACCATGTTT+TGG | + | chr6.3:15040068-15040087 | MS.gene80887:CDS | 45.0% |
| ! | TTATGTGATTTGGCATGGCC+TGG | + | chr6.3:15039202-15039221 | MS.gene80887:intron | 45.0% |
| !! | GCAGCATGAGAAGGTTTTGA+AGG | - | chr6.3:15041185-15041204 | None:intergenic | 45.0% |
| !! | TAGATGGCTTTGTTTGGTGC+AGG | + | chr6.3:15040441-15040460 | MS.gene80887:intron | 45.0% |
| !! | TATCCATAGTTTTGCGGAGG+AGG | - | chr6.3:15038952-15038971 | None:intergenic | 45.0% |
| !! | TCTTATGGTTCGGCGTCTTT+TGG | + | chr6.3:15041125-15041144 | MS.gene80887:CDS | 45.0% |
| !!! | CTCATGCTGCTAGTTTTGAG+CGG | + | chr6.3:15041195-15041214 | MS.gene80887:CDS | 45.0% |
| ACAATCGTTGAGCAGAGTGG+AGG | + | chr6.3:15040051-15040070 | MS.gene80887:CDS | 50.0% | |
| ACGACATCTTGGTACGAAGG+TGG | - | chr6.3:15041236-15041255 | None:intergenic | 50.0% | |
| AGCTTGCATCACATCGGGAA+TGG | + | chr6.3:15039585-15039604 | MS.gene80887:CDS | 50.0% | |
| CCATCCCCGAATCCAAAACA+AGG | - | chr6.3:15039684-15039703 | None:intergenic | 50.0% | |
| CCATGTTCTCGATCTCGATC+GGG | + | chr6.3:15041345-15041364 | MS.gene80887:intron | 50.0% | |
| CCCAACACCCTCTTATGGTT+CGG | + | chr6.3:15041115-15041134 | MS.gene80887:CDS | 50.0% | |
| CGACATCTTGGTACGAAGGT+GGG | - | chr6.3:15041235-15041254 | None:intergenic | 50.0% | |
| GCCATGTTCTCGATCTCGAT+CGG | + | chr6.3:15041344-15041363 | MS.gene80887:intron | 50.0% | |
| GGAGGTCGGGCATCATAATA+TGG | - | chr6.3:15038928-15038947 | None:intergenic | 50.0% | |
| GGTGATAATTGCAGATGGCC+AGG | + | chr6.3:15040089-15040108 | MS.gene80887:CDS | 50.0% | |
| TCATATCCGGACCCTCATTC+GGG | + | chr6.3:15038823-15038842 | MS.gene80887:CDS | 50.0% | |
| TGGACCTTGGGACATGATGA+AGG | + | chr6.3:15040660-15040679 | MS.gene80887:CDS | 50.0% | |
| TGGTACGAAGGTGGGTAAGA+AGG | - | chr6.3:15041227-15041246 | None:intergenic | 50.0% | |
| TGGTCCGAATCCCTATGAAC+AGG | + | chr6.3:15039605-15039624 | MS.gene80887:CDS | 50.0% | |
| TTAATGGGGCTCCTGCAGAT+GGG | - | chr6.3:15042203-15042222 | None:intergenic | 50.0% | |
| TTATCACCTGGCCTCGACAA+TGG | - | chr6.3:15040530-15040549 | None:intergenic | 50.0% | |
| TTCAAACGTGTCCCATCTGC+AGG | + | chr6.3:15042189-15042208 | MS.gene80887:CDS | 50.0% | |
| ! | TGGTGTTGGAGATGGACCTT+GGG | + | chr6.3:15040648-15040667 | MS.gene80887:CDS | 50.0% |
| !! | AACCATAAGAGGGTGTTGGG+AGG | - | chr6.3:15041115-15041134 | None:intergenic | 50.0% |
| !! | ACCATAAGAGGGTGTTGGGA+GGG | - | chr6.3:15041114-15041133 | None:intergenic | 50.0% |
| !! | CCGAACCATAAGAGGGTGTT+GGG | - | chr6.3:15041118-15041137 | None:intergenic | 50.0% |
| !! | CTGAGCTCGATGTTGCTTTC+AGG | + | chr6.3:15039540-15039559 | MS.gene80887:intron | 50.0% |
| !! | TTGGTGTTGGAGATGGACCT+TGG | + | chr6.3:15040647-15040666 | MS.gene80887:CDS | 50.0% |
| !!! | CCTTGTTTTGGATTCGGGGA+TGG | + | chr6.3:15039681-15039700 | MS.gene80887:CDS | 50.0% |
| ACCAAGAGCAACGAGTGGAC+AGG | + | chr6.3:15039441-15039460 | MS.gene80887:CDS | 55.0% | |
| ACCTGTCCACTCGTTGCTCT+TGG | - | chr6.3:15039445-15039464 | None:intergenic | 55.0% | |
| ACTGAAGCTCTTGCACGTGC+AGG | + | chr6.3:15039381-15039400 | MS.gene80887:CDS | 55.0% | |
| CCCGATCGAGATCGAGAACA+TGG | - | chr6.3:15041348-15041367 | None:intergenic | 55.0% | |
| CCTCCTCCTCCGCAAAACTA+TGG | + | chr6.3:15038946-15038965 | MS.gene80887:CDS | 55.0% | |
| CCTGACCGTAACCCGAATGA+GGG | - | chr6.3:15038837-15038856 | None:intergenic | 55.0% | |
| GAGCAACGAGTGGACAGGTT+AGG | + | chr6.3:15039446-15039465 | MS.gene80887:intron | 55.0% | |
| GGCGACTCTAGTTGGAGCAT+TGG | - | chr6.3:15041093-15041112 | None:intergenic | 55.0% | |
| GGGGGGTCAAAGTTCCAAAG+AGG | + | chr6.3:15038735-15038754 | MS.gene80887:CDS | 55.0% | |
| GGTTGTTGTGACTCGTGCGT+AGG | - | chr6.3:15038895-15038914 | None:intergenic | 55.0% | |
| GTTAATGGGGCTCCTGCAGA+TGG | - | chr6.3:15042204-15042223 | None:intergenic | 55.0% | |
| TACCTGATGCCCACATCCGA+AGG | - | chr6.3:15041831-15041850 | None:intergenic | 55.0% | |
| TCGATCTCGATCGGGCATGT+TGG | + | chr6.3:15041353-15041372 | MS.gene80887:intron | 55.0% | |
| ! | CCTCATTCGGGTTACGGTCA+GGG | + | chr6.3:15038835-15038854 | MS.gene80887:CDS | 55.0% |
| ! | GCCGAACCATAAGAGGGTGT+TGG | - | chr6.3:15041119-15041138 | None:intergenic | 55.0% |
| ! | GCTGCCTCTTTTCGTGAAGG+AGG | - | chr6.3:15040879-15040898 | None:intergenic | 55.0% |
| ! | GGCACTCTGCCACTAGTTTG+AGG | - | chr6.3:15038979-15038998 | None:intergenic | 55.0% |
| !! | CCATAGTTTTGCGGAGGAGG+AGG | - | chr6.3:15038949-15038968 | None:intergenic | 55.0% |
| !! | TAGTTTTGCGGAGGAGGAGG+AGG | - | chr6.3:15038946-15038965 | None:intergenic | 55.0% |
| ACATGGGAGGCTCAGTCCAC+AGG | + | chr6.3:15040486-15040505 | MS.gene80887:CDS | 60.0% | |
| CCCTGACCGTAACCCGAATG+AGG | - | chr6.3:15038838-15038857 | None:intergenic | 60.0% | |
| CCGTAACCCGAATGAGGGTC+CGG | - | chr6.3:15038832-15038851 | None:intergenic | 60.0% | |
| GACCGTGGATGCCATTGTCG+AGG | + | chr6.3:15040516-15040535 | MS.gene80887:CDS | 60.0% | |
| GCCCTCCCAACACCCTCTTA+TGG | + | chr6.3:15041110-15041129 | MS.gene80887:CDS | 60.0% | |
| GGCCTCGACAATGGCATCCA+CGG | - | chr6.3:15040521-15040540 | None:intergenic | 60.0% | |
| GTTGGGAGGGCGACTCTAGT+TGG | - | chr6.3:15041101-15041120 | None:intergenic | 60.0% | |
| TCCACAGGAGCAGAAGACCG+TGG | + | chr6.3:15040501-15040520 | MS.gene80887:CDS | 60.0% | |
| TCCACGGTCTTCTGCTCCTG+TGG | - | chr6.3:15040505-15040524 | None:intergenic | 60.0% | |
| TGGATGCCATTGTCGAGGCC+AGG | + | chr6.3:15040521-15040540 | MS.gene80887:CDS | 60.0% | |
| TTTGCGGAGGAGGAGGAGGT+CGG | - | chr6.3:15038942-15038961 | None:intergenic | 60.0% | |
| ! | CATTCGGGTTACGGTCAGGG+CGG | + | chr6.3:15038838-15038857 | MS.gene80887:CDS | 60.0% |
| ! | CCCTCATTCGGGTTACGGTC+AGG | + | chr6.3:15038834-15038853 | MS.gene80887:CDS | 60.0% |
| ! | CCGGACCCTCATTCGGGTTA+CGG | + | chr6.3:15038829-15038848 | MS.gene80887:CDS | 60.0% |
| GGCCTTCGGATGTGGGCATC+AGG | + | chr6.3:15041826-15041845 | MS.gene80887:CDS | 65.0% | |
| TTGCGGAGGAGGAGGAGGTC+GGG | - | chr6.3:15038941-15038960 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 15038733 | 15042233 | 15038733 | ID=MS.gene80887 |
| chr6.3 | mRNA | 15038733 | 15042233 | 15038733 | ID=MS.gene80887.t1;Parent=MS.gene80887 |
| chr6.3 | exon | 15038733 | 15039071 | 15038733 | ID=MS.gene80887.t1.exon1;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15038733 | 15039071 | 15038733 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15039378 | 15039462 | 15039378 | ID=MS.gene80887.t1.exon2;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15039378 | 15039462 | 15039378 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15039562 | 15039702 | 15039562 | ID=MS.gene80887.t1.exon3;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15039562 | 15039702 | 15039562 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15039797 | 15039910 | 15039797 | ID=MS.gene80887.t1.exon4;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15039797 | 15039910 | 15039797 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15040013 | 15040110 | 15040013 | ID=MS.gene80887.t1.exon5;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15040013 | 15040110 | 15040013 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15040463 | 15040542 | 15040463 | ID=MS.gene80887.t1.exon6;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15040463 | 15040542 | 15040463 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15040621 | 15040726 | 15040621 | ID=MS.gene80887.t1.exon7;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15040621 | 15040726 | 15040621 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15040840 | 15040967 | 15040840 | ID=MS.gene80887.t1.exon8;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15040840 | 15040967 | 15040840 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15041079 | 15041310 | 15041079 | ID=MS.gene80887.t1.exon9;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15041079 | 15041310 | 15041079 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15041822 | 15041847 | 15041822 | ID=MS.gene80887.t1.exon10;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15041822 | 15041847 | 15041822 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| chr6.3 | exon | 15042164 | 15042233 | 15042164 | ID=MS.gene80887.t1.exon11;Parent=MS.gene80887.t1 |
| chr6.3 | CDS | 15042164 | 15042233 | 15042164 | ID=cds.MS.gene80887.t1;Parent=MS.gene80887.t1 |
| Gene Sequence |
| Protein sequence |
