AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82661

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82661.t1 MTR_1g061970 73.821 424 106 3 17 437 69 490 0.0 638
MS.gene82661.t1 MTR_4g049910 68.215 409 115 3 30 437 55 449 0.0 555
MS.gene82661.t1 MTR_0427s0010 61.044 249 72 1 189 437 1 224 2.82e-100 299
MS.gene82661.t1 MTR_2g039960 32.750 400 236 12 30 425 41 411 5.25e-56 191
MS.gene82661.t1 MTR_8g018400 33.249 394 232 11 30 420 41 406 1.12e-55 190
MS.gene82661.t1 MTR_4g125970 32.331 399 239 11 30 425 41 411 1.31e-54 187
MS.gene82661.t1 MTR_2g099620 33.417 398 226 13 30 420 25 390 1.32e-54 187
MS.gene82661.t1 MTR_2g099620 33.417 398 226 13 30 420 41 406 1.79e-54 187
MS.gene82661.t1 MTR_4g125970 32.331 399 239 11 30 425 58 428 3.48e-54 186
MS.gene82661.t1 MTR_2g438110 31.218 394 240 10 30 420 34 399 4.18e-53 183
MS.gene82661.t1 MTR_7g076800 32.658 395 229 12 31 420 142 504 8.77e-51 179
MS.gene82661.t1 MTR_7g076830 32.658 395 229 12 31 420 144 506 1.06e-50 179
MS.gene82661.t1 MTR_7g076820 30.918 414 249 12 12 420 132 513 1.66e-49 176
MS.gene82661.t1 MTR_3g107420 29.880 415 256 12 15 422 32 418 2.24e-48 171
MS.gene82661.t1 MTR_1g012420 29.398 415 258 12 15 422 32 418 6.13e-48 170
MS.gene82661.t1 MTR_4g010565 29.356 419 261 12 11 422 105 495 6.74e-47 169
MS.gene82661.t1 MTR_2g100230 30.491 387 224 14 22 397 93 445 1.17e-33 132
MS.gene82661.t1 MTR_4g114120 30.548 383 200 15 41 390 150 499 6.55e-33 131
MS.gene82661.t1 MTR_8g018370 29.143 350 205 9 71 420 11 317 1.16e-32 126
MS.gene82661.t1 MTR_6g082080 30.123 405 242 15 25 420 5 377 1.29e-32 128
MS.gene82661.t1 MTR_2g007000 30.709 381 226 15 30 399 504 857 1.41e-32 131
MS.gene82661.t1 MTR_7g100820 29.716 387 240 11 38 420 141 499 2.65e-32 129
MS.gene82661.t1 MTR_7g056830 29.630 405 244 15 25 420 5 377 4.91e-32 127
MS.gene82661.t1 MTR_7g109720 27.895 380 233 13 30 397 232 582 1.57e-31 128
MS.gene82661.t1 MTR_4g105100 28.866 388 229 13 22 397 199 551 1.14e-30 125
MS.gene82661.t1 MTR_3g083690 27.670 412 236 14 12 394 131 509 1.23e-30 124
MS.gene82661.t1 MTR_2g032630 27.806 392 218 14 29 397 495 844 2.99e-30 124
MS.gene82661.t1 MTR_1g054630 28.718 390 227 13 30 394 154 517 3.52e-30 123
MS.gene82661.t1 MTR_5g027840 31.234 381 206 12 31 390 105 450 8.31e-30 121
MS.gene82661.t1 MTR_2g066050 29.665 418 252 17 4 409 25 412 9.11e-30 121
MS.gene82661.t1 MTR_1g095810 28.362 409 240 14 15 405 135 508 5.26e-29 120
MS.gene82661.t1 MTR_3g467550 28.680 394 234 16 13 390 105 467 9.21e-29 119
MS.gene82661.t1 MTR_1g046570 29.086 361 191 13 72 392 30 365 6.29e-28 114
MS.gene82661.t1 MTR_2g041140 27.792 403 241 14 30 416 141 509 1.09e-27 116
MS.gene82661.t1 MTR_1g026830 28.000 400 235 14 15 396 137 501 1.18e-27 115
MS.gene82661.t1 MTR_4g134170 28.499 393 219 14 36 397 293 654 1.19e-27 116
MS.gene82661.t1 MTR_0915s0010 29.866 298 187 10 43 335 2 282 1.36e-27 111
MS.gene82661.t1 MTR_3g449250 27.049 366 230 11 70 425 127 465 1.95e-27 115
MS.gene82661.t1 MTR_3g449250 27.049 366 230 11 70 425 127 465 2.04e-27 115
MS.gene82661.t1 MTR_3g467550 28.610 374 225 15 33 390 89 436 7.26e-27 113
MS.gene82661.t1 MTR_3g049990 26.764 411 252 13 30 424 152 529 9.13e-27 114
MS.gene82661.t1 MTR_6g005550 27.778 378 216 16 50 408 184 523 3.54e-26 112
MS.gene82661.t1 MTR_6g005320 28.244 393 218 15 36 397 255 614 4.89e-26 111
MS.gene82661.t1 MTR_5g090120 25.401 374 226 12 70 425 118 456 5.80e-26 110
MS.gene82661.t1 MTR_8g027780 28.502 414 232 19 26 410 102 480 1.29e-25 109
MS.gene82661.t1 MTR_6g056080 29.032 372 222 12 56 413 128 471 1.38e-25 110
MS.gene82661.t1 MTR_3g467550 28.889 360 223 15 13 356 105 447 2.35e-25 108
MS.gene82661.t1 MTR_4g079320 27.820 399 208 15 31 399 20 368 2.48e-25 109
MS.gene82661.t1 MTR_8g027775 29.803 406 221 19 26 402 98 468 2.63e-25 108
MS.gene82661.t1 MTR_8g027770 28.241 432 246 19 5 410 182 575 1.02e-24 107
MS.gene82661.t1 MTR_8g097000 28.606 416 229 21 26 410 284 662 9.53e-23 101
MS.gene82661.t1 MTR_1g102410 27.763 371 210 12 56 395 69 412 9.79e-23 101
MS.gene82661.t1 MTR_1g083130 25.000 460 244 17 27 420 23 447 3.27e-22 99.8
MS.gene82661.t1 MTR_4g105100 28.198 344 214 12 22 353 199 521 4.64e-21 95.9
MS.gene82661.t1 MTR_3g107420 31.839 223 136 7 15 231 32 244 1.33e-20 92.4
MS.gene82661.t1 MTR_4g068990 26.700 397 246 16 31 409 69 438 1.67e-20 94.7
MS.gene82661.t1 MTR_6g033070 25.122 410 256 15 29 421 139 514 3.60e-20 93.2
MS.gene82661.t1 MTR_6g039840 25.369 406 246 16 30 409 110 484 8.57e-20 92.4
MS.gene82661.t1 MTR_5g092560 26.121 379 239 13 29 390 67 421 1.66e-19 91.7
MS.gene82661.t1 MTR_2g055850 27.704 379 236 14 30 396 91 443 2.92e-19 90.5
MS.gene82661.t1 MTR_5g069330 26.453 344 231 14 30 365 7 336 5.64e-19 89.0
MS.gene82661.t1 MTR_5g069330 26.453 344 231 14 30 365 3 332 7.11e-19 88.6
MS.gene82661.t1 MTR_8g027780 29.630 351 198 17 31 352 107 437 4.30e-18 86.7
MS.gene82661.t1 MTR_8g042690 24.654 361 210 13 54 390 41 363 1.73e-13 72.4
MS.gene82661.t1 MTR_3g118120 24.213 413 236 19 30 399 132 510 3.15e-13 72.0
MS.gene82661.t1 MTR_6g039840 25.460 326 198 12 101 409 11 308 1.69e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82661.t1 AT3G53110 57.466 442 170 9 3 437 64 494 2.98e-166 477
MS.gene82661.t1 AT1G72730 33.990 406 235 12 20 420 30 407 4.32e-59 199
MS.gene82661.t1 AT3G13920 32.494 397 231 12 30 420 30 395 2.15e-54 186
MS.gene82661.t1 AT3G13920 32.494 397 231 12 30 420 40 405 2.85e-54 186
MS.gene82661.t1 AT4G00660 33.915 401 216 14 31 420 133 495 7.74e-54 187
MS.gene82661.t1 AT4G00660 33.915 401 216 14 31 420 133 495 7.74e-54 187
MS.gene82661.t1 AT3G13920 32.242 397 227 12 30 420 40 400 7.26e-53 182
MS.gene82661.t1 AT1G54270 32.242 397 232 12 30 420 40 405 1.03e-52 182
MS.gene82661.t1 AT3G13920 32.723 382 220 12 30 405 40 390 2.24e-52 181
MS.gene82661.t1 AT3G61240 32.452 416 242 13 10 420 107 488 2.37e-52 183
MS.gene82661.t1 AT3G61240 32.452 416 242 13 10 420 107 488 2.37e-52 183
MS.gene82661.t1 AT3G13920 32.723 382 220 12 30 405 44 394 2.81e-52 181
MS.gene82661.t1 AT3G19760 30.964 394 241 10 30 420 36 401 4.36e-52 180
MS.gene82661.t1 AT2G45810 32.911 395 228 12 31 420 156 518 7.55e-52 182
MS.gene82661.t1 AT1G54270 31.990 397 228 12 30 420 40 400 3.31e-51 178
MS.gene82661.t1 AT1G51380 29.923 391 249 9 30 420 23 388 2.43e-48 170
MS.gene82661.t1 AT5G11170 29.157 415 259 12 15 422 32 418 1.72e-47 169
MS.gene82661.t1 AT5G11200 29.157 415 259 12 15 422 32 418 1.72e-47 169
MS.gene82661.t1 AT5G11170 29.050 358 224 9 71 422 2 335 8.26e-43 154
MS.gene82661.t1 AT5G11200 26.872 454 260 13 15 422 32 459 4.35e-41 152
MS.gene82661.t1 AT5G11200 26.652 469 260 13 15 422 32 477 2.70e-40 150
MS.gene82661.t1 AT5G63120 29.024 379 227 13 31 397 167 515 3.59e-34 135
MS.gene82661.t1 AT3G22310 28.434 415 251 14 33 434 120 501 5.03e-34 134
MS.gene82661.t1 AT3G22310 28.434 415 251 14 33 434 120 501 5.57e-34 134
MS.gene82661.t1 AT3G09720 29.243 383 242 11 40 420 152 507 3.08e-33 131
MS.gene82661.t1 AT3G09720 29.243 383 242 11 40 420 152 507 3.08e-33 131
MS.gene82661.t1 AT3G22330 26.037 434 279 13 11 433 86 488 7.04e-33 131
MS.gene82661.t1 AT3G58510 28.710 411 230 13 12 394 138 513 1.84e-32 130
MS.gene82661.t1 AT3G58510 28.710 411 230 13 12 394 138 513 1.84e-32 130
MS.gene82661.t1 AT3G58510 28.710 411 230 13 12 394 138 513 1.84e-32 130
MS.gene82661.t1 AT1G31970 30.194 361 202 10 50 390 134 464 4.09e-32 128
MS.gene82661.t1 AT3G01540 28.101 395 234 16 29 408 158 517 5.94e-32 129
MS.gene82661.t1 AT3G01540 28.101 395 234 16 29 408 158 517 5.94e-32 129
MS.gene82661.t1 AT3G01540 28.101 395 234 16 29 408 158 517 5.94e-32 129
MS.gene82661.t1 AT3G01540 28.101 395 234 16 29 408 158 517 6.08e-32 128
MS.gene82661.t1 AT1G55150 28.866 388 229 12 22 397 97 449 9.54e-32 127
MS.gene82661.t1 AT3G06480 28.947 380 229 14 29 397 435 784 1.02e-31 129
MS.gene82661.t1 AT2G42520 29.367 395 218 14 30 394 160 523 1.61e-31 127
MS.gene82661.t1 AT2G42520 29.367 395 218 14 30 394 160 523 1.61e-31 127
MS.gene82661.t1 AT2G42520 29.367 395 218 14 30 394 160 523 1.61e-31 127
MS.gene82661.t1 AT5G14610 28.831 385 221 16 29 396 161 509 1.87e-31 127
MS.gene82661.t1 AT5G14610 28.831 385 221 16 29 396 161 509 2.03e-31 127
MS.gene82661.t1 AT1G55150 28.866 388 229 12 22 397 122 474 2.16e-31 126
MS.gene82661.t1 AT5G14610 28.831 385 221 16 29 396 169 517 2.61e-31 127
MS.gene82661.t1 AT1G20920 29.412 374 226 14 35 397 197 543 3.20e-31 127
MS.gene82661.t1 AT3G58570 29.219 397 216 14 30 394 147 510 8.77e-31 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G20920 29.679 374 225 15 35 397 535 881 1.64e-30 125
MS.gene82661.t1 AT1G16280 28.404 426 262 14 8 426 46 435 3.97e-30 122
MS.gene82661.t1 AT5G14610 28.846 364 207 15 50 396 249 577 2.33e-29 121
MS.gene82661.t1 AT5G14610 28.926 363 206 15 50 395 50 377 4.84e-29 119
MS.gene82661.t1 AT5G14610 28.926 363 206 15 50 395 50 377 4.84e-29 119
MS.gene82661.t1 AT5G60990 29.147 422 224 18 30 420 10 387 5.09e-29 118
MS.gene82661.t1 AT5G08620 28.046 435 253 17 1 410 56 455 1.36e-28 118
MS.gene82661.t1 AT4G33370 27.792 385 230 11 30 396 98 452 8.70e-28 116
MS.gene82661.t1 AT5G51280 27.628 409 218 16 30 405 147 510 3.76e-27 114
MS.gene82661.t1 AT4G16630 28.851 409 246 17 30 424 168 545 4.64e-27 114
MS.gene82661.t1 AT5G26742 27.222 360 221 12 70 415 140 472 1.49e-26 113
MS.gene82661.t1 AT5G26742 27.222 360 221 12 70 415 140 472 1.49e-26 113
MS.gene82661.t1 AT5G26742 26.954 371 230 12 70 426 47 390 2.72e-26 112
MS.gene82661.t1 AT2G33730 27.569 399 227 13 30 397 314 681 5.12e-26 111
MS.gene82661.t1 AT5G62190 28.032 371 227 10 56 413 122 465 1.16e-25 110
MS.gene82661.t1 AT2G47330 26.178 382 237 12 30 397 229 579 2.09e-25 109
MS.gene82661.t1 AT5G08610 27.696 408 243 15 26 410 379 757 2.10e-25 109
MS.gene82661.t1 AT3G09620 28.877 374 199 15 35 397 403 720 2.46e-25 109
MS.gene82661.t1 AT3G09620 28.877 374 199 15 35 397 402 719 2.48e-25 109
MS.gene82661.t1 AT1G28180 28.488 344 205 12 69 399 10 325 6.34e-25 105
MS.gene82661.t1 AT5G14610 29.023 348 206 16 29 359 169 492 1.34e-24 106
MS.gene82661.t1 AT5G63120 28.704 324 203 12 31 342 167 474 1.50e-24 106
MS.gene82661.t1 AT5G63120 28.704 324 203 12 31 342 167 474 1.50e-24 106
MS.gene82661.t1 AT5G63120 28.704 324 203 12 31 342 167 474 1.50e-24 106
MS.gene82661.t1 AT5G63120 28.704 324 203 12 31 342 167 474 1.52e-24 106
MS.gene82661.t1 AT1G77030 27.110 391 221 14 31 399 30 378 2.06e-24 107
MS.gene82661.t1 AT3G02065 26.995 426 254 15 14 421 100 486 8.26e-24 103
MS.gene82661.t1 AT3G02065 26.995 426 254 15 14 421 100 486 8.26e-24 103
MS.gene82661.t1 AT3G06480 28.443 334 212 13 29 351 435 752 1.65e-23 103
MS.gene82661.t1 AT3G18600 28.726 369 232 11 29 390 89 433 5.14e-23 102
MS.gene82661.t1 AT5G63630 27.295 414 237 17 26 410 51 429 2.01e-22 100
MS.gene82661.t1 AT5G54910 27.089 395 239 18 31 409 73 434 5.67e-22 99.4
MS.gene82661.t1 AT5G63630 27.295 414 237 17 26 410 245 623 9.12e-22 98.6
MS.gene82661.t1 AT1G51380 26.616 263 183 6 30 292 23 275 1.40e-21 94.7
MS.gene82661.t1 AT5G65900 28.495 372 228 16 30 390 155 499 6.95e-21 95.9
MS.gene82661.t1 AT3G02065 26.486 370 223 12 70 421 11 349 5.10e-20 91.7
MS.gene82661.t1 AT4G09730 23.869 398 260 15 31 409 114 487 6.06e-18 86.7
MS.gene82661.t1 AT1G63250 25.397 441 259 17 31 434 330 737 3.61e-17 84.7
MS.gene82661.t1 AT4G34910 24.694 409 229 12 30 385 47 429 9.58e-17 83.2
MS.gene82661.t1 AT1G51380 26.056 284 190 8 30 301 23 298 1.58e-16 80.5
MS.gene82661.t1 AT1G51380 26.056 284 190 8 30 301 23 298 1.92e-16 80.1
MS.gene82661.t1 AT2G07750 24.886 438 267 16 31 435 377 785 7.65e-16 80.5
MS.gene82661.t1 AT3G06980 24.424 434 251 19 30 420 375 774 7.67e-14 74.3
MS.gene82661.t1 AT2G40700 28.125 256 138 11 2 226 5 245 5.16e-12 68.2

Find 105 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGATTGAAAACGATTT+TGG 0.149747 3.1:+37347205 MS.gene82661:CDS
TAACATCTTTGCACTATTTA+TGG 0.162635 3.1:-37346139 None:intergenic
TTGGATTGTTTAGGTTAATT+TGG 0.187218 3.1:+37346398 MS.gene82661:intron
TAGTCTTCAACACTTCTTTC+TGG 0.220635 3.1:-37347388 None:intergenic
CTTTATATCCCCTATCAAAA+AGG 0.225929 3.1:-37346170 None:intergenic
CACTAGAGAGTTAGCTATTC+AGG 0.252333 3.1:+37344778 MS.gene82661:CDS
ATCATGGCTCAAATCCTTAT+TGG 0.293642 3.1:+37345193 MS.gene82661:CDS
CATCCCATTCACCACATATC+AGG 0.298287 3.1:-37347171 None:intergenic
AACAAACCTGACAGATTAAA+TGG 0.298376 3.1:-37345650 None:intergenic
ATATTCAAGAACATCTATTA+TGG 0.305852 3.1:-37346199 None:intergenic
AATAACTATATACTTGAAAT+AGG 0.320511 3.1:+37346081 MS.gene82661:CDS
AGACTATAAAGTTGCTCTTA+AGG 0.339137 3.1:+37347405 MS.gene82661:CDS
GTTGGTAGGGCTGGACGATT+TGG 0.345626 3.1:+37346510 MS.gene82661:CDS
GCCACTATTAAGACTTTGAT+TGG 0.349788 3.1:+37345223 MS.gene82661:CDS
CCTCTTGAATGTTGAGCAAC+GGG 0.357348 3.1:-37344398 None:intergenic
GCGCAAGCACCCATGGGTTC+AGG 0.379223 3.1:+37344674 MS.gene82661:CDS
CATGCTGTTCTCCGTAAGAT+TGG 0.387544 3.1:+37345097 MS.gene82661:CDS
GAGGAACTCCGGTACCAAAA+AGG 0.396649 3.1:+37345164 MS.gene82661:CDS
AATCTTATCACAAAGATTGT+TGG 0.408507 3.1:+37345952 MS.gene82661:CDS
GTCATGAACCTGAGCTTGAT+TGG 0.422834 3.1:+37346469 MS.gene82661:CDS
CAGAATCATCGGTAAGCTTA+GGG 0.423269 3.1:-37344627 None:intergenic
TCAGAATCATCGGTAAGCTT+AGG 0.423471 3.1:-37344628 None:intergenic
ATTGGGAGGTGTATCTGTAC+AGG 0.424508 3.1:+37346487 MS.gene82661:CDS
TAGTGGCAGGAGTACCAATA+AGG 0.428630 3.1:-37345207 None:intergenic
ACATTACCATTTAATCTGTC+AGG 0.436639 3.1:+37345644 MS.gene82661:CDS
CCGTGGCTTTGATAATCAAC+AGG 0.443501 3.1:+37346296 MS.gene82661:CDS
AAAGTTGCTCTTAAGGAAGC+TGG 0.446114 3.1:+37347412 MS.gene82661:CDS
TGACCATGGGTGTACTCGGC+AGG 0.456294 3.1:-37346450 None:intergenic
TGTATCTGTACAGGGTTGGT+AGG 0.459595 3.1:+37346496 MS.gene82661:CDS
AGTACATTACCTCTGTTACA+TGG 0.461726 3.1:-37347231 None:intergenic
ATTATCGAGGAGTTTAAAGA+TGG 0.461828 3.1:+37346237 MS.gene82661:CDS
CGTAAGATTGGGAAGTTCAC+GGG 0.463544 3.1:+37345109 MS.gene82661:CDS
TCAATCTTAGAGAGTTCATC+AGG 0.467172 3.1:-37346051 None:intergenic
ACCAATCAAAGTCTTAATAG+TGG 0.468929 3.1:-37345224 None:intergenic
CTGTACAGGGTTGGTAGGGC+TGG 0.470500 3.1:+37346501 MS.gene82661:CDS
TAGAGTCCCTTCAGAAGCTT+CGG 0.483278 3.1:-37344566 None:intergenic
CTGAATAGCTAACTCTCTAG+TGG 0.485079 3.1:-37344777 None:intergenic
TTCTACGACTTCTCCTTCAC+CGG 0.489780 3.1:+37344350 MS.gene82661:CDS
ATGCTGTTCTCCGTAAGATT+GGG 0.492209 3.1:+37345098 MS.gene82661:CDS
ATCAAAGTCTTAATAGTGGC+AGG 0.492383 3.1:-37345220 None:intergenic
CCGTAAGATTGGGAAGTTCA+CGG 0.493789 3.1:+37345108 MS.gene82661:CDS
TTTGATTGCGCAAGCACCCA+TGG 0.495123 3.1:+37344667 MS.gene82661:CDS
ATAAGGATTTGAGCCATGAT+AGG 0.498457 3.1:-37345190 None:intergenic
CCGTGAACTTCCCAATCTTA+CGG 0.501266 3.1:-37345108 None:intergenic
GTATCTGTACAGGGTTGGTA+GGG 0.502935 3.1:+37346497 MS.gene82661:CDS
GCTTGAGGAGCATGCAAGGT+TGG 0.505733 3.1:-37344740 None:intergenic
TGAATAGCTAACTCTCTAGT+GGG 0.508229 3.1:-37344776 None:intergenic
TACTCGGCAGGGAACTTTAG+TGG 0.508471 3.1:-37346438 None:intergenic
TACACCTCCCAATCAAGCTC+AGG 0.520014 3.1:-37346477 None:intergenic
TAACCTGATATGTGGTGAAT+GGG 0.520406 3.1:+37347168 MS.gene82661:CDS
GGCTGGACGATTTGGACGCA+AGG 0.521422 3.1:+37346518 MS.gene82661:CDS
TCTCTCGCCGAAGCTTCTGA+AGG 0.527899 3.1:+37344559 MS.gene82661:CDS
TTCATGACCATGGGTGTACT+CGG 0.530008 3.1:-37346454 None:intergenic
GAGCAACGGGGTTTCTGCGG+CGG 0.536633 3.1:-37344385 None:intergenic
ACTTGAAATAGGAGAGAAAG+TGG 0.538252 3.1:+37346092 MS.gene82661:CDS
TATCACAAAGATTGTTGGCA+AGG 0.540703 3.1:+37345957 MS.gene82661:CDS
TTAACCTGATATGTGGTGAA+TGG 0.545463 3.1:+37347167 MS.gene82661:CDS
GATTCTGAATCCTCCACATA+GGG 0.545521 3.1:+37344643 MS.gene82661:CDS
ACCTCTTGAATGTTGAGCAA+CGG 0.546825 3.1:-37344399 None:intergenic
TCATGAACCTGAGCTTGATT+GGG 0.547196 3.1:+37346470 MS.gene82661:CDS
GAGCTATTACTCGCCGGTGA+AGG 0.547969 3.1:-37344363 None:intergenic
TGATTCTCTGTGGATAATGA+AGG 0.551913 3.1:+37345614 MS.gene82661:CDS
TCGTCTGATGTTCTTGCCCG+TGG 0.555694 3.1:+37346279 MS.gene82661:CDS
GTACATTACCTCTGTTACAT+GGG 0.556403 3.1:-37347230 None:intergenic
GTTGAGCAACGGGGTTTCTG+CGG 0.561285 3.1:-37344388 None:intergenic
GAAGGAGAAGTCGTAGAAGA+AGG 0.561886 3.1:-37344345 None:intergenic
TGATTCTGAATCCTCCACAT+AGG 0.562100 3.1:+37344642 MS.gene82661:CDS
CAAGCTCAGGTTCATGACCA+TGG 0.563056 3.1:-37346464 None:intergenic
GCTTCTGAAGGGACTCTATG+TGG 0.569621 3.1:+37344571 MS.gene82661:CDS
TCCTTTCAGAGGAGGAACTC+CGG 0.570347 3.1:+37345153 MS.gene82661:CDS
GAATGTGCAGTTCCTTTCAG+AGG 0.574810 3.1:+37345142 MS.gene82661:CDS
TTGATTGCGCAAGCACCCAT+GGG 0.576901 3.1:+37344668 MS.gene82661:CDS
TGTGGAGGATTCAGAATCAT+CGG 0.579232 3.1:-37344638 None:intergenic
CCCGTTGCTCAACATTCAAG+AGG 0.579244 3.1:+37344398 MS.gene82661:CDS
AAGCTCAGGTTCATGACCAT+GGG 0.580295 3.1:-37346463 None:intergenic
GAGGTGTATCTGTACAGGGT+TGG 0.581990 3.1:+37346492 MS.gene82661:CDS
ACCGGAGTTCCTCCTCTGAA+AGG 0.583335 3.1:-37345154 None:intergenic
CTCTCGCCGAAGCTTCTGAA+GGG 0.584846 3.1:+37344560 MS.gene82661:CDS
TTGAAATAGGAGAGAAAGTG+GGG 0.598223 3.1:+37346094 MS.gene82661:CDS
GATAGCTTGAGGAGCATGCA+AGG 0.599547 3.1:-37344744 None:intergenic
CCTGTTGATTATCAAAGCCA+CGG 0.601464 3.1:-37346296 None:intergenic
TTCCCTGCCGAGTACACCCA+TGG 0.606866 3.1:+37346447 MS.gene82661:CDS
GACCATGGGTGTACTCGGCA+GGG 0.615482 3.1:-37346449 None:intergenic
CTTGAAATAGGAGAGAAAGT+GGG 0.618156 3.1:+37346093 MS.gene82661:CDS
GCGGCGGAGCTATTACTCGC+CGG 0.619267 3.1:-37344369 None:intergenic
GGGCAAATGCAGATAGCTTG+AGG 0.622258 3.1:-37344755 None:intergenic
CAATCTTACGGAGAACAGCA+TGG 0.622572 3.1:-37345096 None:intergenic
TGTGCAGTTCCTTTCAGAGG+AGG 0.623856 3.1:+37345145 MS.gene82661:CDS
CGAGAGAGACAAGTCTTCGA+AGG 0.625780 3.1:-37344543 None:intergenic
CTGTTGATTATCAAAGCCAC+GGG 0.626209 3.1:-37346295 None:intergenic
CATCCCAAGCACAAAACAAG+CGG 0.629039 3.1:-37344702 None:intergenic
AGGATTTGAGCCATGATAGG+TGG 0.634858 3.1:-37345187 None:intergenic
TTGGGAGGTGTATCTGTACA+GGG 0.638291 3.1:+37346488 MS.gene82661:CDS
TGAACCTGAGCTTGATTGGG+AGG 0.642294 3.1:+37346473 MS.gene82661:CDS
TGCGCAATCAAATCCCTATG+TGG 0.644660 3.1:-37344656 None:intergenic
GTAAGATTGGGAAGTTCACG+GGG 0.647484 3.1:+37345110 MS.gene82661:CDS
GCTGTATTTAACCTGATATG+TGG 0.649135 3.1:+37347160 MS.gene82661:CDS
GCTGGACGATTTGGACGCAA+GGG 0.650502 3.1:+37346519 MS.gene82661:CDS
AGGGACTCTATGTGGAGATG+AGG 0.658234 3.1:+37344579 MS.gene82661:CDS
TGCTGATCAACTGCTTGCTG+AGG 0.669303 3.1:+37345294 MS.gene82661:CDS
CGAGAGAGACAAAATTATCG+AGG 0.671994 3.1:+37346224 MS.gene82661:CDS
AATTTCAAGATGATTCTCTG+TGG 0.677398 3.1:+37345604 MS.gene82661:CDS
GCAATCAAATCCCTATGTGG+AGG 0.677952 3.1:-37344653 None:intergenic
CTCTTGAATGTTGAGCAACG+GGG 0.678380 3.1:-37344397 None:intergenic
GAATAGCTAACTCTCTAGTG+GGG 0.713974 3.1:-37344775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTTAGTATTATATAAT+AGG - chr3.1:37345782-37345801 None:intergenic 10.0%
!! AATAACTATATACTTGAAAT+AGG + chr3.1:37346081-37346100 MS.gene82661:CDS 15.0%
!! AAAATACATGTTTCTTGTAT+TGG - chr3.1:37345712-37345731 None:intergenic 20.0%
!! ATATTCAAGAACATCTATTA+TGG - chr3.1:37346202-37346221 None:intergenic 20.0%
!! ATTATTAACATTAACGATGT+CGG - chr3.1:37344955-37344974 None:intergenic 20.0%
!! ATTGATTGAAAAAAAGTTGT+TGG + chr3.1:37346755-37346774 MS.gene82661:intron 20.0%
!! GCTAATAAAAAACAAAGAAA+AGG - chr3.1:37345519-37345538 None:intergenic 20.0%
!! TGTGTAAAAATTAAAAGACT+TGG - chr3.1:37347117-37347136 None:intergenic 20.0%
!! TTGTTTATTCATATAAAGCA+CGG - chr3.1:37344902-37344921 None:intergenic 20.0%
!!! ATTTATGATATTTTCAGTAG+TGG + chr3.1:37347079-37347098 MS.gene82661:intron 20.0%
!!! ATTTTTACACATGTTTTCAT+TGG + chr3.1:37347126-37347145 MS.gene82661:intron 20.0%
!!! TTCTTTGTTTTTTATTAGCA+GGG + chr3.1:37345520-37345539 MS.gene82661:intron 20.0%
!!! TTTCTTTGTTTTTTATTAGC+AGG + chr3.1:37345519-37345538 MS.gene82661:intron 20.0%
!!! TTTTTTCAATCAATGAAACA+TGG - chr3.1:37346749-37346768 None:intergenic 20.0%
! AAATTAAAAGACTTGGCATT+TGG - chr3.1:37347110-37347129 None:intergenic 25.0%
! AACAAATATATTAAACACGG+GGG - chr3.1:37345752-37345771 None:intergenic 25.0%
! AAGAAAACTGAAAAAAGCTA+CGG - chr3.1:37345852-37345871 None:intergenic 25.0%
! AAGTATTTCTTATAAAGGCT+TGG + chr3.1:37346959-37346978 MS.gene82661:intron 25.0%
! AATCTTATCACAAAGATTGT+TGG + chr3.1:37345952-37345971 MS.gene82661:CDS 25.0%
! ACAAAATGATTCATGTAAGT+TGG - chr3.1:37347345-37347364 None:intergenic 25.0%
! CAAAATGATTCATGTAAGTT+GGG - chr3.1:37347344-37347363 None:intergenic 25.0%
! CAACAAATATATTAAACACG+GGG - chr3.1:37345753-37345772 None:intergenic 25.0%
! CCAACAAATATATTAAACAC+GGG - chr3.1:37345754-37345773 None:intergenic 25.0%
! GCCAACAAATATATTAAACA+CGG - chr3.1:37345755-37345774 None:intergenic 25.0%
! GCTGATAATTTGAAAAAATC+AGG + chr3.1:37344854-37344873 MS.gene82661:intron 25.0%
! GGCTTAAGTATTTCTTATAA+AGG + chr3.1:37346954-37346973 MS.gene82661:intron 25.0%
! TAACATCTTTGCACTATTTA+TGG - chr3.1:37346142-37346161 None:intergenic 25.0%
! TGTGTAGTTAACTGTTTAAT+TGG + chr3.1:37346680-37346699 MS.gene82661:intron 25.0%
! TTTATATCCCCTATCAAAAA+GGG - chr3.1:37346172-37346191 None:intergenic 25.0%
!! AACCATACATCTTTTATTGT+TGG + chr3.1:37345374-37345393 MS.gene82661:intron 25.0%
!! AGTATTGAGTAAGTTTAGTT+TGG - chr3.1:37345465-37345484 None:intergenic 25.0%
!! AGTCGATCAAAATTTTCTTA+AGG - chr3.1:37345880-37345899 None:intergenic 25.0%
!! CTCAAAGAAACATTCTTTTT+GGG + chr3.1:37346722-37346741 MS.gene82661:intron 25.0%
!! GTCGATCAAAATTTTCTTAA+GGG - chr3.1:37345879-37345898 None:intergenic 25.0%
!! TGAAGATTTTATATTCTGCA+TGG - chr3.1:37347277-37347296 None:intergenic 25.0%
!! TTGGATTGTTTAGGTTAATT+TGG + chr3.1:37346398-37346417 MS.gene82661:intron 25.0%
!!! GTCTGTATTTTAACATTTTC+TGG + chr3.1:37347026-37347045 MS.gene82661:intron 25.0%
!!! TCATTTTGTTTATGTCATTG+TGG + chr3.1:37347356-37347375 MS.gene82661:intron 25.0%
!!! TCTCTCTTTCTTTTAATTCT+TGG + chr3.1:37344479-37344498 MS.gene82661:intron 25.0%
AACAAACCTGACAGATTAAA+TGG - chr3.1:37345653-37345672 None:intergenic 30.0%
AACCTAAACAATCCAATAGA+AGG - chr3.1:37346394-37346413 None:intergenic 30.0%
AATTTCAAGATGATTCTCTG+TGG + chr3.1:37345604-37345623 MS.gene82661:CDS 30.0%
ACATTACCATTTAATCTGTC+AGG + chr3.1:37345644-37345663 MS.gene82661:CDS 30.0%
ACCAATCAAAGTCTTAATAG+TGG - chr3.1:37345227-37345246 None:intergenic 30.0%
ACTTTGTATGAATGTGCAAA+GGG + chr3.1:37347307-37347326 MS.gene82661:intron 30.0%
AGACTATAAAGTTGCTCTTA+AGG + chr3.1:37347405-37347424 MS.gene82661:CDS 30.0%
ATCCTTCTATTGGATTGTTT+AGG + chr3.1:37346389-37346408 MS.gene82661:intron 30.0%
ATTATCGAGGAGTTTAAAGA+TGG + chr3.1:37346237-37346256 MS.gene82661:CDS 30.0%
CAAAATACTAAATGCTATCC+TGG - chr3.1:37347002-37347021 None:intergenic 30.0%
CCAAAAAGAATGTTTCTTTG+AGG - chr3.1:37346724-37346743 None:intergenic 30.0%
CCCGTGTTTAATATATTTGT+TGG + chr3.1:37345751-37345770 MS.gene82661:intron 30.0%
CTCCAACAATAAAAGATGTA+TGG - chr3.1:37345379-37345398 None:intergenic 30.0%
CTTGAAAGTGAAACTACAAA+TGG - chr3.1:37347053-37347072 None:intergenic 30.0%
CTTTATATCCCCTATCAAAA+AGG - chr3.1:37346173-37346192 None:intergenic 30.0%
TAAGCCATATGTCTACAAAT+GGG - chr3.1:37346940-37346959 None:intergenic 30.0%
TACATGTTTCTTGTATTGGA+TGG - chr3.1:37345708-37345727 None:intergenic 30.0%
TTAAGCCATATGTCTACAAA+TGG - chr3.1:37346941-37346960 None:intergenic 30.0%
TTATTCATGCATCCTTCTAT+TGG + chr3.1:37346379-37346398 MS.gene82661:intron 30.0%
TTTCAAATTATCAGCTGTGT+TGG - chr3.1:37344849-37344868 None:intergenic 30.0%
TTTCAAGCTTCTTGTATATG+TGG + chr3.1:37346809-37346828 MS.gene82661:intron 30.0%
! CCTCAAAGAAACATTCTTTT+TGG + chr3.1:37346721-37346740 MS.gene82661:intron 30.0%
! TATGATATTTTCAGTAGTGG+TGG + chr3.1:37347082-37347101 MS.gene82661:intron 30.0%
! TCGAAGATTGAAAACGATTT+TGG + chr3.1:37347205-37347224 MS.gene82661:CDS 30.0%
! TGAACTTTTTGTGAAGAAAG+AGG + chr3.1:37345987-37346006 MS.gene82661:CDS 30.0%
!! AGTTTCTAAAACTGTTTGCT+TGG + chr3.1:37346544-37346563 MS.gene82661:intron 30.0%
!! GAGTAAGTTTAGTTTGGAAT+GGG - chr3.1:37345459-37345478 None:intergenic 30.0%
!! TGAGTAAGTTTAGTTTGGAA+TGG - chr3.1:37345460-37345479 None:intergenic 30.0%
!!! GTTTTTTATTAGCAGGGTTT+TGG + chr3.1:37345526-37345545 MS.gene82661:intron 30.0%
ACAACTTAACCTATGAACCA+TGG + chr3.1:37344918-37344937 MS.gene82661:intron 35.0%
ACTTGAAATAGGAGAGAAAG+TGG + chr3.1:37346092-37346111 MS.gene82661:CDS 35.0%
AGCTTCTTGTATATGTGGAT+AGG + chr3.1:37346814-37346833 MS.gene82661:intron 35.0%
AGTACATTACCTCTGTTACA+TGG - chr3.1:37347234-37347253 None:intergenic 35.0%
ATAAGGATTTGAGCCATGAT+AGG - chr3.1:37345193-37345212 None:intergenic 35.0%
ATCAAAGTCTTAATAGTGGC+AGG - chr3.1:37345223-37345242 None:intergenic 35.0%
ATCATGGCTCAAATCCTTAT+TGG + chr3.1:37345193-37345212 MS.gene82661:CDS 35.0%
ATGAATGTGCAAAGGGTTAT+GGG + chr3.1:37347314-37347333 MS.gene82661:intron 35.0%
CTTGAAATAGGAGAGAAAGT+GGG + chr3.1:37346093-37346112 MS.gene82661:CDS 35.0%
GACTTTGTATGAATGTGCAA+AGG + chr3.1:37347306-37347325 MS.gene82661:intron 35.0%
GCCACTATTAAGACTTTGAT+TGG + chr3.1:37345223-37345242 MS.gene82661:CDS 35.0%
GCTGTATTTAACCTGATATG+TGG + chr3.1:37347160-37347179 MS.gene82661:CDS 35.0%
GCTTCTTGTATATGTGGATA+GGG + chr3.1:37346815-37346834 MS.gene82661:intron 35.0%
GTACATTACCTCTGTTACAT+GGG - chr3.1:37347233-37347252 None:intergenic 35.0%
GTTTATGTCATTGTGGATGT+AGG + chr3.1:37347363-37347382 MS.gene82661:intron 35.0%
TAACCTGATATGTGGTGAAT+GGG + chr3.1:37347168-37347187 MS.gene82661:CDS 35.0%
TAAGCCTTAGAAACTAGACT+AGG - chr3.1:37346899-37346918 None:intergenic 35.0%
TAGCTATTGAGTAGTCGAAT+CGG - chr3.1:37345415-37345434 None:intergenic 35.0%
TAGTCTTCAACACTTCTTTC+TGG - chr3.1:37347391-37347410 None:intergenic 35.0%
TATCACAAAGATTGTTGGCA+AGG + chr3.1:37345957-37345976 MS.gene82661:CDS 35.0%
TATGAATGTGCAAAGGGTTA+TGG + chr3.1:37347313-37347332 MS.gene82661:intron 35.0%
TCAATCTTAGAGAGTTCATC+AGG - chr3.1:37346054-37346073 None:intergenic 35.0%
TGAATAGCTAACTCTCTAGT+GGG - chr3.1:37344779-37344798 None:intergenic 35.0%
TGATTCTCTGTGGATAATGA+AGG + chr3.1:37345614-37345633 MS.gene82661:CDS 35.0%
TGCAACAAGACACAGTTATA+GGG - chr3.1:37345579-37345598 None:intergenic 35.0%
TGTAGTAAACTGGTAGCTTA+GGG + chr3.1:37346656-37346675 MS.gene82661:intron 35.0%
TGTTTCTTGTATTGGATGGA+TGG - chr3.1:37345704-37345723 None:intergenic 35.0%
TTAACCTGATATGTGGTGAA+TGG + chr3.1:37347167-37347186 MS.gene82661:CDS 35.0%
TTGAAATAGGAGAGAAAGTG+GGG + chr3.1:37346094-37346113 MS.gene82661:CDS 35.0%
! ACACAAAGCCCTTTTTGATA+GGG + chr3.1:37346161-37346180 MS.gene82661:CDS 35.0%
! ATGTTTTCATTGGACTGAAC+AGG + chr3.1:37347136-37347155 MS.gene82661:intron 35.0%
! TACACAAAGCCCTTTTTGAT+AGG + chr3.1:37346160-37346179 MS.gene82661:CDS 35.0%
! TCTGCAGGTTCTTATGTTTT+CGG + chr3.1:37345906-37345925 MS.gene82661:intron 35.0%
! TGTTTTCATTGGACTGAACA+GGG + chr3.1:37347137-37347156 MS.gene82661:intron 35.0%
AAAGTTGCTCTTAAGGAAGC+TGG + chr3.1:37347412-37347431 MS.gene82661:CDS 40.0%
AAGAGTCCAAGCACATGTAA+AGG - chr3.1:37346350-37346369 None:intergenic 40.0%
ACCTCCCATTTGTAGACATA+TGG + chr3.1:37346933-37346952 MS.gene82661:intron 40.0%
ACCTCTTGAATGTTGAGCAA+CGG - chr3.1:37344402-37344421 None:intergenic 40.0%
AGAAACTAGACTAGGTGGTT+TGG - chr3.1:37346891-37346910 None:intergenic 40.0%
AGCTATTGAGTAGTCGAATC+GGG - chr3.1:37345414-37345433 None:intergenic 40.0%
ATGCTGTTCTCCGTAAGATT+GGG + chr3.1:37345098-37345117 MS.gene82661:CDS 40.0%
CACTAGAGAGTTAGCTATTC+AGG + chr3.1:37344778-37344797 MS.gene82661:CDS 40.0%
CAGAATCATCGGTAAGCTTA+GGG - chr3.1:37344630-37344649 None:intergenic 40.0%
CAGTTTACTACAGGACACTA+AGG - chr3.1:37346648-37346667 None:intergenic 40.0%
CGAGAGAGACAAAATTATCG+AGG + chr3.1:37346224-37346243 MS.gene82661:CDS 40.0%
CTAAATGCTATCCTGGATCA+AGG - chr3.1:37346995-37347014 None:intergenic 40.0%
CTAAGCTACCAGTTTACTAC+AGG - chr3.1:37346657-37346676 None:intergenic 40.0%
CTGAATAGCTAACTCTCTAG+TGG - chr3.1:37344780-37344799 None:intergenic 40.0%
CTGCAACAAGACACAGTTAT+AGG - chr3.1:37345580-37345599 None:intergenic 40.0%
CTGTAGTAAACTGGTAGCTT+AGG + chr3.1:37346655-37346674 MS.gene82661:intron 40.0%
CTTAGTGTCCTGTAGTAAAC+TGG + chr3.1:37346646-37346665 MS.gene82661:intron 40.0%
CTTGTATTGGATGGATGGTA+TGG - chr3.1:37345699-37345718 None:intergenic 40.0%
GAAACTAGACTAGGTGGTTT+GGG - chr3.1:37346890-37346909 None:intergenic 40.0%
GAATAGCTAACTCTCTAGTG+GGG - chr3.1:37344778-37344797 None:intergenic 40.0%
GAGAGTTAGCTATTCAGGTA+TGG + chr3.1:37344783-37344802 MS.gene82661:intron 40.0%
GATTCTGAATCCTCCACATA+GGG + chr3.1:37344643-37344662 MS.gene82661:CDS 40.0%
TATGTCTACAAATGGGAGGT+TGG - chr3.1:37346933-37346952 None:intergenic 40.0%
TCAGAATCATCGGTAAGCTT+AGG - chr3.1:37344631-37344650 None:intergenic 40.0%
TCATGAACCTGAGCTTGATT+GGG + chr3.1:37346470-37346489 MS.gene82661:CDS 40.0%
TGATTCTGAATCCTCCACAT+AGG + chr3.1:37344642-37344661 MS.gene82661:CDS 40.0%
TGTGCAGTGAATTGTTTGCT+TGG + chr3.1:37346598-37346617 MS.gene82661:intron 40.0%
TGTGGAGGATTCAGAATCAT+CGG - chr3.1:37344641-37344660 None:intergenic 40.0%
! ACCACCTAGTCTAGTTTCTA+AGG + chr3.1:37346892-37346911 MS.gene82661:intron 40.0%
! CACAAAGCCCTTTTTGATAG+GGG + chr3.1:37346162-37346181 MS.gene82661:CDS 40.0%
! CCTGTTGATTATCAAAGCCA+CGG - chr3.1:37346299-37346318 None:intergenic 40.0%
! CTATAACTGTGTCTTGTTGC+AGG + chr3.1:37345578-37345597 MS.gene82661:intron 40.0%
! CTGTTGATTATCAAAGCCAC+GGG - chr3.1:37346298-37346317 None:intergenic 40.0%
! CTTAGGGCTTGTATTTTGCT+AGG - chr3.1:37344614-37344633 None:intergenic 40.0%
! CTTGGCGAGAAATTGACTTA+GGG + chr3.1:37344497-37344516 MS.gene82661:intron 40.0%
! GTTTTCATTGGACTGAACAG+GGG + chr3.1:37347138-37347157 MS.gene82661:intron 40.0%
! TCTTGGCGAGAAATTGACTT+AGG + chr3.1:37344496-37344515 MS.gene82661:intron 40.0%
!!! AAAACCGCTTGTTTTGTGCT+TGG + chr3.1:37344698-37344717 MS.gene82661:CDS 40.0%
!!! AAACCGCTTGTTTTGTGCTT+GGG + chr3.1:37344699-37344718 MS.gene82661:CDS 40.0%
AACACGGGGGAAAGACTATT+TGG - chr3.1:37345739-37345758 None:intergenic 45.0%
AAGCTCAGGTTCATGACCAT+GGG - chr3.1:37346466-37346485 None:intergenic 45.0%
ACAAGTCTTCGAAGGTAACC+TGG - chr3.1:37344538-37344557 None:intergenic 45.0%
ACCAAAAAGGCCACCTATCA+TGG + chr3.1:37345177-37345196 MS.gene82661:CDS 45.0%
AGGATTTGAGCCATGATAGG+TGG - chr3.1:37345190-37345209 None:intergenic 45.0%
CAATCTTACGGAGAACAGCA+TGG - chr3.1:37345099-37345118 None:intergenic 45.0%
CATCCCAAGCACAAAACAAG+CGG - chr3.1:37344705-37344724 None:intergenic 45.0%
CATCCCATTCACCACATATC+AGG - chr3.1:37347174-37347193 None:intergenic 45.0%
CATGCTGTTCTCCGTAAGAT+TGG + chr3.1:37345097-37345116 MS.gene82661:CDS 45.0%
CATGTAAAGGTGAGACAGAG+AGG - chr3.1:37346337-37346356 None:intergenic 45.0%
CCGTAAGATTGGGAAGTTCA+CGG + chr3.1:37345108-37345127 MS.gene82661:CDS 45.0%
CCGTGAACTTCCCAATCTTA+CGG - chr3.1:37345111-37345130 None:intergenic 45.0%
CCTCTTGAATGTTGAGCAAC+GGG - chr3.1:37344401-37344420 None:intergenic 45.0%
CGTAAGATTGGGAAGTTCAC+GGG + chr3.1:37345109-37345128 MS.gene82661:CDS 45.0%
CTCTTGAATGTTGAGCAACG+GGG - chr3.1:37344400-37344419 None:intergenic 45.0%
GAAGGAGAAGTCGTAGAAGA+AGG - chr3.1:37344348-37344367 None:intergenic 45.0%
GAATGTGCAGTTCCTTTCAG+AGG + chr3.1:37345142-37345161 MS.gene82661:CDS 45.0%
GACAATCTTCACCTTGATCC+AGG + chr3.1:37346981-37347000 MS.gene82661:intron 45.0%
GCAATCAAATCCCTATGTGG+AGG - chr3.1:37344656-37344675 None:intergenic 45.0%
GCCATATGTCTACAAATGGG+AGG - chr3.1:37346937-37346956 None:intergenic 45.0%
GCCTTAGAAACTAGACTAGG+TGG - chr3.1:37346896-37346915 None:intergenic 45.0%
GCTATTGAGTAGTCGAATCG+GGG - chr3.1:37345413-37345432 None:intergenic 45.0%
GGTATGGTCACTATGAAGCA+CGG + chr3.1:37344799-37344818 MS.gene82661:intron 45.0%
GTAAGATTGGGAAGTTCACG+GGG + chr3.1:37345110-37345129 MS.gene82661:CDS 45.0%
GTCATGAACCTGAGCTTGAT+TGG + chr3.1:37346469-37346488 MS.gene82661:CDS 45.0%
GTCTCACCTTTACATGTGCT+TGG + chr3.1:37346341-37346360 MS.gene82661:intron 45.0%
TAGAGTCCCTTCAGAAGCTT+CGG - chr3.1:37344569-37344588 None:intergenic 45.0%
TGCGCAATCAAATCCCTATG+TGG - chr3.1:37344659-37344678 None:intergenic 45.0%
TGTCAGTGTCCATGGTTCAT+AGG - chr3.1:37344930-37344949 None:intergenic 45.0%
TTCATGACCATGGGTGTACT+CGG - chr3.1:37346457-37346476 None:intergenic 45.0%
TTCTACGACTTCTCCTTCAC+CGG + chr3.1:37344350-37344369 MS.gene82661:CDS 45.0%
! ATCAGGACACGTCTTATTCG+AGG + chr3.1:37344871-37344890 MS.gene82661:intron 45.0%
! ATTGGGAGGTGTATCTGTAC+AGG + chr3.1:37346487-37346506 MS.gene82661:CDS 45.0%
! GGGTTTTTGAATTCTGCTCC+AGG + chr3.1:37344517-37344536 MS.gene82661:intron 45.0%
! TGTATCTGTACAGGGTTGGT+AGG + chr3.1:37346496-37346515 MS.gene82661:CDS 45.0%
! TTGGGAGGTGTATCTGTACA+GGG + chr3.1:37346488-37346507 MS.gene82661:CDS 45.0%
!! ATAGGTGGCCTTTTTGGTAC+CGG - chr3.1:37345175-37345194 None:intergenic 45.0%
!! CCGTGGCTTTGATAATCAAC+AGG + chr3.1:37346296-37346315 MS.gene82661:CDS 45.0%
!! GTATCTGTACAGGGTTGGTA+GGG + chr3.1:37346497-37346516 MS.gene82661:CDS 45.0%
!! TAGTGGCAGGAGTACCAATA+AGG - chr3.1:37345210-37345229 None:intergenic 45.0%
!! TGATCGACTTGTGTTTCTGC+AGG + chr3.1:37345891-37345910 MS.gene82661:intron 45.0%
!!! TTTTGGCTCCCATGTAACAG+AGG + chr3.1:37347222-37347241 MS.gene82661:CDS 45.0%
AGGGACTCTATGTGGAGATG+AGG + chr3.1:37344579-37344598 MS.gene82661:CDS 50.0%
CAAATGGGAGGTTGGAGACT+TGG - chr3.1:37346925-37346944 None:intergenic 50.0%
CAAGCTCAGGTTCATGACCA+TGG - chr3.1:37346467-37346486 None:intergenic 50.0%
CCCGTTGCTCAACATTCAAG+AGG + chr3.1:37344398-37344417 MS.gene82661:CDS 50.0%
CGAGAGAGACAAGTCTTCGA+AGG - chr3.1:37344546-37344565 None:intergenic 50.0%
GAGAGAGAGAGAGAGAAGAG+TGG - chr3.1:37344431-37344450 None:intergenic 50.0%
GAGGAACTCCGGTACCAAAA+AGG + chr3.1:37345164-37345183 MS.gene82661:CDS 50.0%
GAGGTGTATCTGTACAGGGT+TGG + chr3.1:37346492-37346511 MS.gene82661:CDS 50.0%
GGGCAAATGCAGATAGCTTG+AGG - chr3.1:37344758-37344777 None:intergenic 50.0%
TACACCTCCCAATCAAGCTC+AGG - chr3.1:37346480-37346499 None:intergenic 50.0%
TACTCGGCAGGGAACTTTAG+TGG - chr3.1:37346441-37346460 None:intergenic 50.0%
TCCTTTCAGAGGAGGAACTC+CGG + chr3.1:37345153-37345172 MS.gene82661:CDS 50.0%
TGAACCTGAGCTTGATTGGG+AGG + chr3.1:37346473-37346492 MS.gene82661:CDS 50.0%
TGTGCAGTTCCTTTCAGAGG+AGG + chr3.1:37345145-37345164 MS.gene82661:CDS 50.0%
TTGATTGCGCAAGCACCCAT+GGG + chr3.1:37344668-37344687 MS.gene82661:CDS 50.0%
TTTGATTGCGCAAGCACCCA+TGG + chr3.1:37344667-37344686 MS.gene82661:CDS 50.0%
! AGCGGTTTTTCCTGAACCCA+TGG - chr3.1:37344687-37344706 None:intergenic 50.0%
! GATAGCTTGAGGAGCATGCA+AGG - chr3.1:37344747-37344766 None:intergenic 50.0%
! GCCATGATAGGTGGCCTTTT+TGG - chr3.1:37345181-37345200 None:intergenic 50.0%
! GCGGTTTTTCCTGAACCCAT+GGG - chr3.1:37344686-37344705 None:intergenic 50.0%
! GCTTCTGAAGGGACTCTATG+TGG + chr3.1:37344571-37344590 MS.gene82661:CDS 50.0%
! TGCTGATCAACTGCTTGCTG+AGG + chr3.1:37345294-37345313 MS.gene82661:CDS 50.0%
ACCGGAGTTCCTCCTCTGAA+AGG - chr3.1:37345157-37345176 None:intergenic 55.0%
CTCTCGCCGAAGCTTCTGAA+GGG + chr3.1:37344560-37344579 MS.gene82661:CDS 55.0%
GAGCTATTACTCGCCGGTGA+AGG - chr3.1:37344366-37344385 None:intergenic 55.0%
GTTGAGCAACGGGGTTTCTG+CGG - chr3.1:37344391-37344410 None:intergenic 55.0%
TCGTCTGATGTTCTTGCCCG+TGG + chr3.1:37346279-37346298 MS.gene82661:CDS 55.0%
TCTCTCGCCGAAGCTTCTGA+AGG + chr3.1:37344559-37344578 MS.gene82661:CDS 55.0%
TGAAGCACGGACACAGACAC+CGG + chr3.1:37344812-37344831 MS.gene82661:intron 55.0%
TGTCGGTGTGTCAGTGTCCA+TGG - chr3.1:37344938-37344957 None:intergenic 55.0%
! GCTGGACGATTTGGACGCAA+GGG + chr3.1:37346519-37346538 MS.gene82661:CDS 55.0%
! GCTTGAGGAGCATGCAAGGT+TGG - chr3.1:37344743-37344762 None:intergenic 55.0%
! GTTGGTAGGGCTGGACGATT+TGG + chr3.1:37346510-37346529 MS.gene82661:CDS 55.0%
! TGTGTTGGCGTGTCAGTGTC+CGG - chr3.1:37344834-37344853 None:intergenic 55.0%
GACCATGGGTGTACTCGGCA+GGG - chr3.1:37346452-37346471 None:intergenic 60.0%
TGACCATGGGTGTACTCGGC+AGG - chr3.1:37346453-37346472 None:intergenic 60.0%
TTCCCTGCCGAGTACACCCA+TGG + chr3.1:37346447-37346466 MS.gene82661:CDS 60.0%
! GGCTGGACGATTTGGACGCA+AGG + chr3.1:37346518-37346537 MS.gene82661:CDS 60.0%
!! CTGTACAGGGTTGGTAGGGC+TGG + chr3.1:37346501-37346520 MS.gene82661:CDS 60.0%
GAGCAACGGGGTTTCTGCGG+CGG - chr3.1:37344388-37344407 None:intergenic 65.0%
GCGCAAGCACCCATGGGTTC+AGG + chr3.1:37344674-37344693 MS.gene82661:CDS 65.0%
GCGGCGGAGCTATTACTCGC+CGG - chr3.1:37344372-37344391 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 37344336 37347447 37344336 ID=MS.gene82661
chr3.1 mRNA 37344336 37347447 37344336 ID=MS.gene82661.t1;Parent=MS.gene82661
chr3.1 exon 37344336 37344419 37344336 ID=MS.gene82661.t1.exon1;Parent=MS.gene82661.t1
chr3.1 CDS 37344336 37344419 37344336 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37344539 37344799 37344539 ID=MS.gene82661.t1.exon2;Parent=MS.gene82661.t1
chr3.1 CDS 37344539 37344799 37344539 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37345094 37345315 37345094 ID=MS.gene82661.t1.exon3;Parent=MS.gene82661.t1
chr3.1 CDS 37345094 37345315 37345094 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37345600 37345665 37345600 ID=MS.gene82661.t1.exon4;Parent=MS.gene82661.t1
chr3.1 CDS 37345600 37345665 37345600 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37345913 37346317 37345913 ID=MS.gene82661.t1.exon5;Parent=MS.gene82661.t1
chr3.1 CDS 37345913 37346317 37345913 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37346411 37346540 37346411 ID=MS.gene82661.t1.exon6;Parent=MS.gene82661.t1
chr3.1 CDS 37346411 37346540 37346411 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37347158 37347243 37347158 ID=MS.gene82661.t1.exon7;Parent=MS.gene82661.t1
chr3.1 CDS 37347158 37347243 37347158 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
chr3.1 exon 37347385 37347447 37347385 ID=MS.gene82661.t1.exon8;Parent=MS.gene82661.t1
chr3.1 CDS 37347385 37347447 37347385 ID=cds.MS.gene82661.t1;Parent=MS.gene82661.t1
Gene Sequence

>MS.gene82661

ATGGCAAAACCTTCTTCTACGACTTCTCCTTCACCGGCGAGTAATAGCTCCGCCGCAGAAACCCCGTTGCTCAACATTCAAGAGGTTCGACACCACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTTAATTCTTGGCGAGAAATTGACTTAGGGTTTTTGAATTCTGCTCCAGGTTACCTTCGAAGACTTGTCTCTCTCGCCGAAGCTTCTGAAGGGACTCTATGTGGAGATGAGGTTTCTTTTACCTAGCAAAATACAAGCCCTAAGCTTACCGATGATTCTGAATCCTCCACATAGGGATTTGATTGCGCAAGCACCCATGGGTTCAGGAAAAACCGCTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACCTTGCATGCTCCTCAAGCTATCTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGGTATGGTCACTATGAAGCACGGACACAGACACCGGACACTGACACGCCAACACAGCTGATAATTTGAAAAAATCAGGACACGTCTTATTCGAGGAGTGTCCGTGCTTTATATGAATAAACAACTTAACCTATGAACCATGGACACTGACACACCGACATCGTTAATGTTAATAATTTGAGAAAATCACATAATTCAGTGTAATTATATGATCTTTCATAGATTAACACTTATCATTTATTTTCTTTTTCTTAATAGCTTGTGTGTGATTTTTATTTTGTTGTGTTACGTTTTAGAACCATGCTGTTCTCCGTAAGATTGGGAAGTTCACGGGGATTAGCTCAGAATGTGCAGTTCCTTTCAGAGGAGGAACTCCGGTACCAAAAAGGCCACCTATCATGGCTCAAATCCTTATTGGTACTCCTGCCACTATTAAGACTTTGATTGGTTTCAAGAAACTTGCGTTGACAAAATTGAAGATTCTCGTTTTTGATGATGCTGATCAACTGCTTGCTGAGGTACATATTTCTCATGCTAATTATATGTTGTTTTACTACTCTTACATACAAGCACAACAACCATACATCTTTTATTGTTGGAGAATTACTTATACCCCGATTCGACTACTCAATAGCTAAACAAGTGATTGATGAGTGTTCCCATTCCAAACTAAACTTACTCAATACTTCACTTTTTATTGAATTTGTCATGCGCTTTTCCTTTTCTTTGTTTTTTATTAGCAGGGTTTTGGTTTCTAAGTATGATGTGCTTTAATTTACCCTATAACTGTGTCTTGTTGCAGGATGAATTTCAAGATGATTCTCTGTGGATAATGAAGGCAGTAGAACATTACCATTTAATCTGTCAGGTTTGTTTGCTTAATGTGCTTGCATGTATGCCATACCATCCATCCAATACAAGAAACATGTATTTTCACGCCAAATAGTCTTTCCCCCGTGTTTAATATATTTGTTGGCTCTTCCTATTATATAATACTAAATATCAGACATAAAAATTTCAAATGCTTGTATCTGCTCTGATGTGTGTGTTACCGTAGCTTTTTTCAGTTTTCTTTATTCCCTTAAGAAAATTTTGATCGACTTGTGTTTCTGCAGGTTCTTATGTTTTCGGCTACGTTTAATGACACTGTCAAGAATCTTATCACAAAGATTGTTGGCAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGATCTATCATTCGCTGCAGTGAAGCAGTACAAAGTTCGTGTTCCTGATGAACTCTCTAAGATTGAAGTTATTAATAACTATATACTTGAAATAGGAGAGAAAGTGGGGCAAACTATGATATTTGTGCACACCATAAATAGTGCAAAGATGTTACACAAAGCCCTTTTTGATAGGGGATATAAAGTTAGTTCCATAATAGATGTTCTTGAATATGACGAGAGAGACAAAATTATCGAGGAGTTTAAAGATGGTTTGACTCAGATTCTTATATCGTCTGATGTTCTTGCCCGTGGCTTTGATAATCAACAGGTGCTCATTTGCTCTTCCTCTCTGTCTCACCTTTACATGTGCTTGGACTCTTTATTTATTTTTATTCATGCATCCTTCTATTGGATTGTTTAGGTTAATTTGGTTATCAACTATGATCTGCCACTAAAGTTCCCTGCCGAGTACACCCATGGTCATGAACCTGAGCTTGATTGGGAGGTGTATCTGTACAGGGTTGGTAGGGCTGGACGATTTGGACGCAAGGGTAAGTTTCTAAAACTGTTTGCTTGGTTGTGTTATGTAGTAAACTTCAGCTTAGTGTTGTGCAGTGAATTGTTTGCTTGGTTGTGTTATGTAGTAAACTGTCAACCTTAGTGTCCTGTAGTAAACTGGTAGCTTAGGGTTGTGTAGTTAACTGTTTAATTGGTTGCTGTTATTTTATTTTCCTCAAAGAAACATTCTTTTTGGGACCATGTTTCATTGATTGAAAAAAAGTTGTTGGTTCTATTATTACTCTAATCTTACTAGTCATATTTCAAGCTTCTTGTATATGTGGATAGGGAATGTTATTTCAGATTCGATAAAGTCTAGACATCGATAAAGTCTACATGCCCAAACCACCTAGTCTAGTTTCTAAGGCTTATATCCAAGTCTCCAACCTCCCATTTGTAGACATATGGCTTAAGTATTTCTTATAAAGGCTTGGACAATCTTCACCTTGATCCAGGATAGCATTTAGTATTTTGTTATGTCTGTATTTTAACATTTTCTGGTCCATTTGTAGTTTCACTTTCAAGTAAGTTATTTATGATATTTTCAGTAGTGGTGGTGCCAAATGCCAAGTCTTTTAATTTTTACACATGTTTTCATTGGACTGAACAGGGGCTGTATTTAACCTGATATGTGGTGAATGGGATGAAAATCTCATGTCGAAGATTGAAAACGATTTTGGCTCCCATGTAACAGAGGTAATGTACTTGTATTGTGATTATGATTCTCCATGCAGAATATAAAATCTTCATTATTCGAAGACTTTGTATGAATGTGCAAAGGGTTATGGGTATGCCCAACTTACATGAATCATTTTGTTTATGTCATTGTGGATGTAGGTGCCAGAAAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAGGAAGCTGGTTTACTGATTTGA
Protein sequence

>MS.gene82661.t1

MAKPSSTTSPSPASNSSAAETPLLNIQEVTFEDLSLSPKLLKGLYVEMRFLLPSKIQALSLPMILNPPHRDLIAQAPMGSGKTACFVLGMLSRVDPTLHAPQAICICPTRELAIQNHAVLRKIGKFTGISSECAVPFRGGTPVPKRPPIMAQILIGTPATIKTLIGFKKLALTKLKILVFDDADQLLAEDEFQDDSLWIMKAVEHYHLICQVLMFSATFNDTVKNLITKIVGKEHNELFVKKEDLSFAAVKQYKVRVPDELSKIEVINNYILEIGEKVGQTMIFVHTINSAKMLHKALFDRGYKVSSIIDVLEYDERDKIIEEFKDGLTQILISSDVLARGFDNQQVNLVINYDLPLKFPAEYTHGHEPELDWEVYLYRVGRAGRFGRKGAVFNLICGEWDENLMSKIENDFGSHVTEVPERSVEDYKVALKEAGLLI