AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069842.t1 MTR_6g033070 97.584 538 13 0 1 538 1 538 0.0 1077
MS.gene069842.t1 MTR_1g054630 35.507 414 251 5 134 534 148 558 1.97e-79 261
MS.gene069842.t1 MTR_2g100230 34.889 407 250 7 116 516 73 470 3.83e-77 252
MS.gene069842.t1 MTR_3g083690 35.024 414 251 6 132 530 137 547 1.33e-76 253
MS.gene069842.t1 MTR_4g114120 35.613 424 251 6 134 538 134 554 1.74e-73 246
MS.gene069842.t1 MTR_6g005550 34.169 439 270 9 106 538 130 555 1.51e-72 245
MS.gene069842.t1 MTR_3g467550 35.204 392 239 6 115 494 89 477 5.08e-72 240
MS.gene069842.t1 MTR_4g134170 32.235 425 255 8 121 520 267 683 8.02e-70 238
MS.gene069842.t1 MTR_6g005320 31.529 425 256 8 121 520 229 643 2.35e-69 235
MS.gene069842.t1 MTR_3g467550 35.754 358 218 5 146 494 92 446 2.31e-68 229
MS.gene069842.t1 MTR_4g105100 32.057 418 270 8 118 531 179 586 1.24e-67 230
MS.gene069842.t1 MTR_2g032630 33.333 423 267 7 103 516 453 869 1.95e-66 233
MS.gene069842.t1 MTR_1g095810 31.106 434 276 9 120 537 124 550 1.63e-63 218
MS.gene069842.t1 MTR_3g467550 34.103 390 237 7 92 464 61 447 4.84e-63 213
MS.gene069842.t1 MTR_1g026830 30.626 431 276 9 119 533 125 548 6.54e-62 214
MS.gene069842.t1 MTR_7g109720 30.788 419 273 8 109 518 199 609 5.34e-59 209
MS.gene069842.t1 MTR_5g027840 33.503 394 252 8 137 525 101 489 4.99e-57 199
MS.gene069842.t1 MTR_2g007000 30.923 401 268 6 121 516 484 880 3.83e-56 203
MS.gene069842.t1 MTR_7g100820 29.902 408 267 8 121 520 110 506 5.00e-53 190
MS.gene069842.t1 MTR_4g105100 32.653 343 222 7 123 461 184 521 5.37e-53 188
MS.gene069842.t1 MTR_7g056830 32.584 356 226 5 140 491 10 355 7.38e-52 183
MS.gene069842.t1 MTR_6g082080 31.694 366 236 5 140 501 10 365 3.08e-51 181
MS.gene069842.t1 MTR_3g049990 30.854 363 241 6 140 498 152 508 4.62e-51 187
MS.gene069842.t1 MTR_2g041140 31.063 367 236 8 140 498 141 498 1.46e-49 182
MS.gene069842.t1 MTR_4g125970 32.418 364 234 6 140 501 41 394 1.93e-49 176
MS.gene069842.t1 MTR_4g125970 32.418 364 234 6 140 501 58 411 3.13e-49 176
MS.gene069842.t1 MTR_2g039960 32.143 364 235 6 140 501 41 394 3.96e-49 175
MS.gene069842.t1 MTR_2g099620 32.249 369 228 7 140 501 25 378 8.37e-49 174
MS.gene069842.t1 MTR_2g099620 32.249 369 228 7 140 501 41 394 1.10e-48 174
MS.gene069842.t1 MTR_8g018400 31.868 364 236 6 140 501 41 394 1.47e-48 173
MS.gene069842.t1 MTR_7g076830 31.476 359 228 6 141 495 144 488 4.12e-48 174
MS.gene069842.t1 MTR_7g076800 31.476 359 228 6 141 495 142 486 4.41e-48 174
MS.gene069842.t1 MTR_7g076820 31.476 359 228 6 141 495 151 495 1.01e-47 174
MS.gene069842.t1 MTR_2g438110 28.877 374 234 7 140 501 34 387 2.29e-47 170
MS.gene069842.t1 MTR_5g090120 30.769 364 240 9 139 497 80 436 4.07e-47 173
MS.gene069842.t1 MTR_4g079320 28.382 377 262 4 141 515 20 390 6.94e-46 172
MS.gene069842.t1 MTR_2g066050 30.233 387 250 7 140 521 53 424 8.04e-46 168
MS.gene069842.t1 MTR_3g449250 31.081 370 241 7 132 496 82 442 1.55e-45 168
MS.gene069842.t1 MTR_3g449250 31.081 370 241 7 132 496 82 442 1.62e-45 169
MS.gene069842.t1 MTR_2g055850 31.536 371 229 12 132 490 85 442 1.20e-40 155
MS.gene069842.t1 MTR_1g012420 30.914 372 230 10 131 491 38 393 3.70e-40 151
MS.gene069842.t1 MTR_3g107420 30.102 392 242 10 110 491 24 393 1.05e-39 149
MS.gene069842.t1 MTR_4g059460 27.778 450 249 11 140 517 44 489 2.20e-39 152
MS.gene069842.t1 MTR_4g010565 31.283 374 226 10 131 491 115 470 3.17e-39 150
MS.gene069842.t1 MTR_2g043360 27.529 425 231 10 140 490 41 462 2.06e-38 149
MS.gene069842.t1 MTR_3g071620 28.954 373 227 10 146 490 22 384 7.89e-38 147
MS.gene069842.t1 MTR_4g112340 32.277 347 209 15 158 490 115 449 1.09e-37 147
MS.gene069842.t1 MTR_6g039840 27.344 384 261 9 138 506 108 488 3.29e-37 146
MS.gene069842.t1 MTR_8g027775 30.110 362 240 10 141 490 103 463 5.39e-37 144
MS.gene069842.t1 MTR_7g057250 26.218 431 246 9 140 501 163 590 5.03e-36 143
MS.gene069842.t1 MTR_6g056080 28.280 343 231 6 164 497 127 463 2.92e-35 140
MS.gene069842.t1 MTR_8g027770 30.728 371 226 13 141 490 202 562 4.25e-35 140
MS.gene069842.t1 MTR_8g027780 30.133 375 246 11 131 490 94 467 1.27e-34 137
MS.gene069842.t1 MTR_1g102410 25.464 377 250 6 146 497 50 420 4.06e-34 137
MS.gene069842.t1 MTR_0915s0010 30.952 294 185 6 154 443 3 282 5.12e-34 130
MS.gene069842.t1 MTR_5g092560 26.866 335 232 9 163 490 99 427 5.48e-31 128
MS.gene069842.t1 MTR_3g118120 24.868 378 255 9 140 490 132 507 1.24e-30 125
MS.gene069842.t1 MTR_1g083130 26.161 409 249 12 140 501 26 428 1.83e-29 122
MS.gene069842.t1 MTR_8g097000 27.007 411 271 13 117 504 259 663 1.78e-28 120
MS.gene069842.t1 MTR_4g068990 26.567 335 232 9 163 490 99 426 2.66e-28 120
MS.gene069842.t1 MTR_1g061970 27.487 382 234 12 140 490 80 449 3.42e-28 118
MS.gene069842.t1 MTR_8g027780 30.233 344 224 11 131 459 94 436 7.22e-27 114
MS.gene069842.t1 MTR_4g459350 32.407 216 123 5 140 333 41 255 2.45e-25 105
MS.gene069842.t1 MTR_6g039840 26.384 307 210 8 213 506 9 312 4.85e-25 108
MS.gene069842.t1 MTR_4g049910 26.963 382 234 10 140 497 55 415 1.08e-24 107
MS.gene069842.t1 MTR_4g077370 34.975 203 121 5 139 337 249 444 5.92e-23 102
MS.gene069842.t1 MTR_4g077370 34.884 215 104 6 139 344 1 188 4.52e-22 99.4
MS.gene069842.t1 MTR_4g112320 28.727 275 167 12 228 490 10 267 7.77e-23 101
MS.gene069842.t1 MTR_4g131750 25.613 367 230 10 145 479 87 442 7.96e-23 102
MS.gene069842.t1 MTR_8g032230 36.306 157 93 3 138 293 8 158 1.00e-22 95.5
MS.gene069842.t1 MTR_1g046570 26.343 391 234 12 155 506 6 381 1.11e-22 100
MS.gene069842.t1 MTR_5g069330 24.658 365 255 9 134 491 1 352 4.55e-21 96.3
MS.gene069842.t1 MTR_5g077690 23.831 449 266 13 145 523 34 476 6.30e-21 96.3
MS.gene069842.t1 MTR_5g069330 24.791 359 250 9 140 491 3 348 7.09e-21 95.5
MS.gene069842.t1 MTR_8g018370 26.113 337 212 9 169 501 2 305 5.38e-20 91.7
MS.gene069842.t1 MTR_2g063080 27.572 243 149 6 131 346 98 340 4.84e-19 90.9
MS.gene069842.t1 MTR_2g043360 22.630 327 181 6 235 490 19 344 6.56e-19 90.1
MS.gene069842.t1 MTR_3g107420 29.268 246 142 9 110 344 24 248 1.21e-17 84.3
MS.gene069842.t1 MTR_8g042690 23.315 356 218 12 163 490 41 369 1.09e-16 83.2
MS.gene069842.t1 MTR_2g006440 26.027 365 213 14 151 489 398 731 1.27e-14 77.8
MS.gene069842.t1 MTR_5g092560 25.822 213 149 6 284 490 7 216 2.54e-14 75.9
MS.gene069842.t1 MTR_4g068990 25.822 213 148 7 284 490 7 215 6.91e-14 74.7
MS.gene069842.t1 MTR_2g042440 24.932 365 223 14 158 498 39 376 9.22e-13 71.2
MS.gene069842.t1 MTR_2g042440 24.932 365 223 14 158 498 39 376 9.56e-13 71.2
MS.gene069842.t1 MTR_3g063040 23.460 341 217 11 158 481 13 326 3.03e-12 70.1
MS.gene069842.t1 MTR_8g062720 28.436 211 124 7 139 331 90 291 5.59e-12 68.6
MS.gene069842.t1 MTR_8g080160 23.770 366 226 12 149 493 266 599 3.46e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069842.t1 AT3G02065 65.927 496 146 4 27 518 14 490 0.0 678
MS.gene069842.t1 AT3G02065 65.927 496 146 4 27 518 14 490 0.0 678
MS.gene069842.t1 AT3G02065 71.105 353 101 1 167 518 1 353 0.0 531
MS.gene069842.t1 AT1G55150 33.415 407 256 7 117 516 76 474 1.01e-76 251
MS.gene069842.t1 AT1G55150 33.415 407 256 7 117 516 101 499 8.07e-76 249
MS.gene069842.t1 AT5G14610 33.718 433 269 9 111 537 132 552 9.97e-74 246
MS.gene069842.t1 AT5G14610 33.718 433 269 9 111 537 132 552 1.02e-73 246
MS.gene069842.t1 AT2G42520 34.532 417 244 7 134 530 154 561 1.12e-73 246
MS.gene069842.t1 AT2G42520 34.532 417 244 7 134 530 154 561 1.12e-73 246
MS.gene069842.t1 AT2G42520 34.532 417 244 7 134 530 154 561 1.12e-73 246
MS.gene069842.t1 AT3G58570 34.293 417 245 7 134 530 141 548 1.59e-73 246
MS.gene069842.t1 AT5G14610 33.718 433 269 9 111 537 140 560 2.12e-73 246
MS.gene069842.t1 AT5G63120 32.331 399 263 6 121 516 146 540 2.93e-73 244
MS.gene069842.t1 AT3G01540 33.412 425 264 9 116 534 134 545 9.91e-73 243
MS.gene069842.t1 AT3G01540 33.412 425 264 9 116 534 134 545 1.02e-72 243
MS.gene069842.t1 AT3G01540 33.412 425 264 9 116 534 134 545 1.02e-72 243
MS.gene069842.t1 AT3G01540 33.412 425 264 9 116 534 134 545 1.02e-72 243
MS.gene069842.t1 AT3G58510 33.415 410 247 6 132 524 144 544 3.64e-72 241
MS.gene069842.t1 AT3G58510 33.415 410 247 6 132 524 144 544 3.64e-72 241
MS.gene069842.t1 AT3G58510 33.415 410 247 6 132 524 144 544 3.64e-72 241
MS.gene069842.t1 AT2G33730 32.000 425 256 7 121 520 294 710 5.48e-67 230
MS.gene069842.t1 AT3G06480 32.921 404 255 7 120 516 415 809 4.70e-66 232
MS.gene069842.t1 AT5G14610 33.419 389 242 8 154 537 45 421 8.43e-65 219
MS.gene069842.t1 AT5G14610 33.419 389 242 8 154 537 45 421 8.43e-65 219
MS.gene069842.t1 AT5G14610 33.419 389 242 8 154 537 244 620 1.23e-63 221
MS.gene069842.t1 AT4G33370 32.564 433 275 10 118 537 75 503 1.14e-62 214
MS.gene069842.t1 AT5G51280 32.020 406 262 7 118 513 124 525 2.39e-62 215
MS.gene069842.t1 AT1G31970 34.536 388 245 7 136 517 113 497 3.18e-61 211
MS.gene069842.t1 AT5G14610 33.512 373 229 9 111 477 140 499 6.83e-58 201
MS.gene069842.t1 AT2G47330 30.693 404 264 7 123 518 211 606 1.07e-56 202
MS.gene069842.t1 AT1G28180 33.611 360 217 7 167 516 1 348 1.75e-56 193
MS.gene069842.t1 AT5G63120 31.965 341 223 7 121 457 146 481 8.23e-56 195
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 167 568 5.54e-55 199
MS.gene069842.t1 AT5G63120 31.832 333 220 6 121 450 146 474 7.40e-55 192
MS.gene069842.t1 AT5G63120 31.832 333 220 6 121 450 146 474 7.40e-55 192
MS.gene069842.t1 AT5G63120 31.832 333 220 6 121 450 146 474 7.40e-55 192
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT1G20920 29.902 408 273 7 116 516 505 906 2.26e-54 198
MS.gene069842.t1 AT3G09720 30.170 411 258 9 121 518 118 512 3.12e-54 192
MS.gene069842.t1 AT3G09720 30.170 411 258 9 121 518 118 512 3.12e-54 192
MS.gene069842.t1 AT4G16630 30.997 371 242 7 134 498 162 524 5.12e-53 192
MS.gene069842.t1 AT3G06480 32.665 349 219 7 120 461 415 754 8.11e-53 192
MS.gene069842.t1 AT4G00660 30.390 385 250 6 141 521 133 503 3.91e-51 182
MS.gene069842.t1 AT4G00660 30.390 385 250 6 141 521 133 503 3.91e-51 182
MS.gene069842.t1 AT1G72730 32.418 364 234 5 140 501 42 395 1.19e-50 179
MS.gene069842.t1 AT3G13920 32.877 365 231 7 140 501 30 383 2.62e-50 178
MS.gene069842.t1 AT3G13920 32.877 365 231 7 140 501 40 393 2.89e-50 178
MS.gene069842.t1 AT1G51380 30.532 357 234 7 137 490 20 365 2.92e-50 177
MS.gene069842.t1 AT3G13920 33.149 362 228 7 140 498 44 394 3.17e-50 178
MS.gene069842.t1 AT3G13920 33.149 362 228 7 140 498 40 390 3.35e-50 178
MS.gene069842.t1 AT3G19760 27.297 370 251 5 137 501 33 389 4.65e-49 175
MS.gene069842.t1 AT1G54270 33.609 363 226 8 140 498 40 391 2.76e-48 173
MS.gene069842.t1 AT3G61240 31.755 359 227 6 141 495 126 470 1.23e-47 173
MS.gene069842.t1 AT3G61240 31.755 359 227 6 141 495 126 470 1.23e-47 173
MS.gene069842.t1 AT5G60990 29.820 389 255 7 138 515 8 389 1.83e-47 172
MS.gene069842.t1 AT3G13920 32.329 365 228 8 140 501 40 388 2.45e-47 170
MS.gene069842.t1 AT1G77030 30.056 356 241 4 141 494 30 379 1.06e-46 175
MS.gene069842.t1 AT5G26742 31.436 369 242 7 139 501 102 465 1.84e-46 174
MS.gene069842.t1 AT5G26742 31.436 369 242 7 139 501 102 465 1.86e-46 174
MS.gene069842.t1 AT2G45810 31.198 359 229 6 141 495 156 500 2.02e-46 170
MS.gene069842.t1 AT3G09620 29.040 396 243 7 123 513 380 742 2.08e-46 175
MS.gene069842.t1 AT3G09620 29.040 396 243 7 123 513 379 741 2.15e-46 174
MS.gene069842.t1 AT1G54270 33.058 363 223 9 140 498 40 386 3.11e-45 164
MS.gene069842.t1 AT3G22330 28.650 363 249 8 139 497 104 460 1.54e-44 166
MS.gene069842.t1 AT3G22310 29.670 364 244 9 139 497 116 472 1.27e-43 164
MS.gene069842.t1 AT3G22310 29.670 364 244 9 139 497 116 472 1.52e-43 164
MS.gene069842.t1 AT1G16280 31.215 362 232 8 140 494 59 410 3.18e-43 160
MS.gene069842.t1 AT5G26742 31.165 369 231 9 139 501 21 372 3.61e-42 160
MS.gene069842.t1 AT2G40700 29.519 437 231 13 140 501 31 465 5.36e-42 159
MS.gene069842.t1 AT5G11170 29.398 415 268 11 114 521 28 424 8.63e-40 150
MS.gene069842.t1 AT5G11200 29.398 415 268 11 114 521 28 424 8.63e-40 150
MS.gene069842.t1 AT1G71370 28.571 357 237 9 146 490 23 373 2.80e-38 148
MS.gene069842.t1 AT4G09730 25.065 387 274 6 138 510 111 495 1.47e-36 144
MS.gene069842.t1 AT3G18600 28.866 388 257 10 131 513 83 456 1.15e-35 140
MS.gene069842.t1 AT5G05450 27.273 363 235 10 150 490 27 382 7.74e-35 139
MS.gene069842.t1 AT5G62190 27.298 359 242 6 150 497 107 457 8.23e-35 139
MS.gene069842.t1 AT5G65900 29.167 384 250 10 140 515 155 524 1.50e-34 138
MS.gene069842.t1 AT5G08620 28.912 377 233 14 151 504 92 456 4.68e-34 136
MS.gene069842.t1 AT5G11200 26.915 457 266 13 114 521 28 465 6.44e-34 134
MS.gene069842.t1 AT5G54910 26.854 391 266 12 136 519 68 445 1.32e-32 133
MS.gene069842.t1 AT3G16840 26.389 432 243 13 140 501 191 617 2.54e-32 132
MS.gene069842.t1 AT3G16840 26.389 432 243 13 140 501 192 618 2.76e-32 132
MS.gene069842.t1 AT5G63630 27.793 367 250 11 151 504 66 430 8.65e-32 129
MS.gene069842.t1 AT5G63630 27.793 367 250 11 151 504 260 624 1.87e-31 129
MS.gene069842.t1 AT1G12770 26.471 408 245 12 140 495 111 515 1.23e-30 126
MS.gene069842.t1 AT1G12770 26.471 408 245 12 140 495 111 515 1.23e-30 126
MS.gene069842.t1 AT5G11170 29.060 351 231 10 178 521 2 341 4.65e-30 121
MS.gene069842.t1 AT5G08610 28.954 373 210 14 151 490 394 744 5.43e-30 125
MS.gene069842.t1 AT1G51380 28.395 243 163 4 137 378 20 252 1.53e-28 115
MS.gene069842.t1 AT4G34910 26.873 387 232 11 140 479 47 429 1.99e-28 120
MS.gene069842.t1 AT3G06980 24.603 378 255 9 140 490 375 749 1.15e-26 115
MS.gene069842.t1 AT3G53110 25.935 401 255 13 121 493 68 454 2.13e-26 112
MS.gene069842.t1 AT1G51380 29.577 213 142 4 137 348 20 225 4.23e-26 108
MS.gene069842.t1 AT1G71280 27.619 315 190 9 146 452 24 308 5.75e-26 109
MS.gene069842.t1 AT1G51380 29.577 213 142 4 137 348 20 225 5.85e-26 108
MS.gene069842.t1 AT1G63250 27.078 373 246 11 151 504 340 705 6.43e-26 112
MS.gene069842.t1 AT1G71280 27.673 318 192 9 146 455 24 311 7.85e-26 110
MS.gene069842.t1 AT2G07750 26.810 373 247 11 151 504 387 752 1.84e-24 108
MS.gene069842.t1 AT5G19210 25.414 362 232 9 146 479 83 434 5.10e-24 105
MS.gene069842.t1 AT4G15850 23.557 433 253 11 149 513 41 463 9.27e-22 99.0
MS.gene069842.t1 AT1G28180 37.288 118 69 2 167 281 1 116 3.31e-19 84.0
MS.gene069842.t1 AT5G11200 28.632 234 147 7 114 342 28 246 1.31e-16 83.2
MS.gene069842.t1 AT5G11200 29.208 202 138 4 321 521 286 483 1.68e-14 76.6
MS.gene069842.t1 AT1G10930 26.462 359 219 15 151 489 443 776 9.91e-16 81.3
MS.gene069842.t1 AT1G27880 24.011 354 227 12 158 494 266 594 1.16e-13 74.3
MS.gene069842.t1 AT1G27880 24.079 353 226 12 158 493 266 593 1.65e-13 73.9
MS.gene069842.t1 AT3G05740 25.065 383 241 15 146 508 106 462 3.00e-13 72.8
MS.gene069842.t1 AT3G05740 25.326 383 240 15 146 508 191 547 5.53e-13 72.0
MS.gene069842.t1 AT4G35740 23.669 338 205 12 166 479 41 349 1.54e-11 67.4

Find 132 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTGGCTTAAAATGTTTC+TGG 0.147612 6.2:+21466384 None:intergenic
CTTGCACAACGAGATATTAT+TGG 0.230162 6.2:+21466938 None:intergenic
GGTTGTGGCTACTGGAGTTT+TGG 0.244181 6.2:-21466207 MS.gene069842:CDS
AGAAATAATGCAGTCATTTA+TGG 0.244375 6.2:-21466246 MS.gene069842:CDS
CGACATGCCTAATTCGATTA+AGG 0.248513 6.2:-21466141 MS.gene069842:CDS
TTCCCGGTGGTTGTGGCTAC+TGG 0.281226 6.2:-21466215 MS.gene069842:CDS
GACCAGAGAGATGCTCTTCC+TGG 0.301895 6.2:-21467427 MS.gene069842:CDS
TGATGATGATGTTTGTAGTT+TGG 0.317671 6.2:-21467350 MS.gene069842:CDS
CTGCATTATTTCTCTCCTTT+CGG 0.320408 6.2:+21466256 None:intergenic
CCGTGAAACAGCTAGCAATT+TGG 0.321173 6.2:-21466454 MS.gene069842:CDS
ACGGCCTTGTTTGGTCTGTT+AGG 0.325864 6.2:+21466473 None:intergenic
CTTTCAACCGATTCACCTAA+TGG 0.337119 6.2:-21467827 MS.gene069842:intron
GGGGAAGGACATGCTTGTTT+TGG 0.337822 6.2:-21466999 MS.gene069842:CDS
AGCAATCCCCGCTGCTTTGA+TGG 0.339953 6.2:-21467020 MS.gene069842:CDS
CGTGAAACAGCTAGCAATTT+GGG 0.341262 6.2:-21466453 MS.gene069842:CDS
AAGGAATATGTACATCAAAT+AGG 0.341270 6.2:-21466122 MS.gene069842:CDS
TCCAGCACTGGATGAGGATT+TGG 0.344408 6.2:+21467297 None:intergenic
ATGTTCTGCAGGAGTTTGTC+AGG 0.352782 6.2:+21467085 None:intergenic
AGCTGTTTCACGGCCTTGTT+TGG 0.357465 6.2:+21466464 None:intergenic
GGTAGAGGGGTTGATCTATT+AGG 0.360776 6.2:-21466185 MS.gene069842:CDS
ACATATTCCTTAATCGAATT+AGG 0.361620 6.2:+21466134 None:intergenic
TCATGTGAAGGGTGTTGTTT+CGG 0.371484 6.2:-21467140 MS.gene069842:CDS
AGAGAAGATGGCAAACTCTA+TGG 0.375037 6.2:-21466528 MS.gene069842:CDS
TCATCGTTTGATGTATGTTT+CGG 0.378578 6.2:-21466915 MS.gene069842:CDS
GTCCGATTCTTTAGAGAAGA+TGG 0.393381 6.2:-21466540 MS.gene069842:CDS
CGATGTCAAGGTGAGTTCTA+AGG 0.394116 6.2:-21467449 MS.gene069842:CDS
ATTTATGGTCGGCGAGTTCC+CGG 0.396686 6.2:-21466231 MS.gene069842:CDS
CACGCGAAATTGCTCGGAAA+AGG 0.410354 6.2:-21466827 MS.gene069842:CDS
GGGATTGCTTGCATTTGAAC+AGG 0.411047 6.2:+21467034 None:intergenic
AAATCAGGAACGCCGTCTTT+AGG 0.411740 6.2:-21467208 MS.gene069842:CDS
CGGGTGCCGCCGCTGTACCT+CGG 0.418581 6.2:-21466004 MS.gene069842:CDS
TTTAGGAGGTGATCAGGTTC+AGG 0.420816 6.2:-21467191 MS.gene069842:CDS
GAAAGCGATTGAAACTTTGA+TGG 0.426209 6.2:+21467845 None:intergenic
CGGCGAGTTCCCGGTGGTTG+TGG 0.434782 6.2:-21466222 MS.gene069842:CDS
TATACGTCGGCTCGAGACTC+GGG 0.438739 6.2:-21466355 MS.gene069842:CDS
AATAGGAAGGGCATCTAGAA+TGG 0.439220 6.2:-21466105 MS.gene069842:CDS
AACATTACCATTAGGTGAAT+CGG 0.441100 6.2:+21467820 None:intergenic
TGCCATCTTCTCTAAAGAAT+CGG 0.441703 6.2:+21466538 None:intergenic
GTTAAAGCTGTTTCAATTCA+CGG 0.442461 6.2:-21466293 MS.gene069842:CDS
CATGAAGCGAACGACATAAC+CGG 0.444417 6.2:+21467115 None:intergenic
CCCCAGGAAGAGCATCTCTC+TGG 0.445942 6.2:+21467425 None:intergenic
AACGCAATTACAGTTTCAAC+AGG 0.446108 6.2:-21466317 MS.gene069842:CDS
GCAATCCCCGCTGCTTTGAT+GGG 0.456850 6.2:-21467019 MS.gene069842:CDS
GAGACTCGGGGCAGATCTCT+TGG 0.456902 6.2:-21466342 MS.gene069842:CDS
CAGCTGCTTCTATGTTCTGC+AGG 0.459617 6.2:+21467074 None:intergenic
GCCGTCTTTAGGAGGTGATC+AGG 0.459928 6.2:-21467197 MS.gene069842:CDS
AGAGATACTGACAACAAATC+AGG 0.465586 6.2:-21467223 MS.gene069842:CDS
CACGGCTTTGTCACAACCTC+AGG 0.465662 6.2:-21466585 MS.gene069842:CDS
ACCAGAGAGATGCTCTTCCT+GGG 0.473413 6.2:-21467426 MS.gene069842:CDS
AAGTGGACTGCATGCTTCAA+AGG 0.474942 6.2:-21466637 MS.gene069842:CDS
TCCTTCCCCATCAAAGCAGC+GGG 0.475720 6.2:+21467013 None:intergenic
TAGTTTGGAATGTAAACAAT+CGG 0.486405 6.2:-21467335 MS.gene069842:CDS
ACAAGGAGTTGAATTGATTG+TGG 0.487874 6.2:-21466738 MS.gene069842:CDS
CAAGGAGTTGAATTGATTGT+GGG 0.488532 6.2:-21466737 MS.gene069842:CDS
GGGTGCCGCCGCTGTACCTC+GGG 0.488624 6.2:-21466003 MS.gene069842:CDS
ACAATACACTGGGGCTCCCC+AGG 0.494415 6.2:+21467409 None:intergenic
CCAAATTGCTAGCTGTTTCA+CGG 0.499554 6.2:+21466454 None:intergenic
TACGAGAGAGCTCAGTATAC+AGG 0.499894 6.2:-21466858 MS.gene069842:CDS
TTTAAAACTGCACTTGTGGT+TGG 0.501585 6.2:-21466797 MS.gene069842:CDS
AAACTTTGATGGGTCATCGT+TGG 0.503229 6.2:+21467856 None:intergenic
AGTGGACTGCATGCTTCAAA+GGG 0.503807 6.2:-21466636 MS.gene069842:CDS
TAAATGCACTCGTCGGCTGC+AGG 0.504410 6.2:+21467250 None:intergenic
ACTCCAGTAGCCACAACCAC+CGG 0.504693 6.2:+21466212 None:intergenic
GAGCCGACGTATATTACAAC+AGG 0.508711 6.2:+21466365 None:intergenic
GAAGAGCACGCGAAATTGCT+CGG 0.511225 6.2:-21466833 MS.gene069842:CDS
TCAGGTATTGCAGATATTCA+CGG 0.515977 6.2:-21466603 MS.gene069842:CDS
ATATACGTCGGCTCGAGACT+CGG 0.519620 6.2:-21466356 MS.gene069842:CDS
AAAAGATCAACAAGCCGTCC+TGG 0.520031 6.2:+21466710 None:intergenic
TAAAGAATCGGACGTTGTTG+CGG 0.524657 6.2:+21466550 None:intergenic
GAATTGATTGTGGGAACACC+AGG 0.524874 6.2:-21466728 MS.gene069842:CDS
ATAGGAAGGGCATCTAGAAT+GGG 0.525349 6.2:-21466104 MS.gene069842:CDS
GTTAGTCGATGTATTAAAGT+CGG 0.529271 6.2:-21466024 MS.gene069842:CDS
AAAACTGCACTTGTGGTTGG+TGG 0.533633 6.2:-21466794 MS.gene069842:CDS
AGACTTTCCTGAACCTGTAT+CGG 0.533821 6.2:+21466976 None:intergenic
GAAGGGTGTTGTTTCGGCAC+CGG 0.534256 6.2:-21467134 MS.gene069842:CDS
CACATATATATTCACCGTAT+CGG 0.534333 6.2:+21467380 None:intergenic
AATATGTACATCAAATAGGA+AGG 0.538019 6.2:-21466118 MS.gene069842:CDS
TCCAAATCCTCATCCAGTGC+TGG 0.543059 6.2:-21467298 MS.gene069842:CDS
TGTGGTTGGTGGTGATGCCA+TGG 0.551178 6.2:-21466783 MS.gene069842:CDS
TTAGTCGATGTATTAAAGTC+GGG 0.558344 6.2:-21466023 MS.gene069842:CDS
GAAACTCGACATTCATGTGA+AGG 0.558611 6.2:-21467152 MS.gene069842:CDS
AAAGCGATTGAAACTTTGAT+GGG 0.561237 6.2:+21467846 None:intergenic
AAGGGCATCTAGAATGGGAG+AGG 0.566272 6.2:-21466099 MS.gene069842:CDS
CTGCAGAACATAGAAGCAGC+TGG 0.566645 6.2:-21467073 MS.gene069842:CDS
CTCCAGTAGCCACAACCACC+GGG 0.567240 6.2:+21466213 None:intergenic
GCTTGCATTTGAACAGGCGT+AGG 0.569429 6.2:+21467040 None:intergenic
CCCCGCTGCTTTGATGGGGA+AGG 0.572022 6.2:-21467014 MS.gene069842:CDS
GATACAGTGGTTATAACCGT+TGG 0.572374 6.2:-21466500 MS.gene069842:CDS
TGTATTGTATGTGGCCGATA+CGG 0.574833 6.2:-21467394 MS.gene069842:CDS
AAGACATCCAGCACTGGATG+AGG 0.577695 6.2:+21467291 None:intergenic
TGTTCTGCAGGAGTTTGTCA+GGG 0.581419 6.2:+21467086 None:intergenic
TCAGGAACGCCGTCTTTAGG+AGG 0.581955 6.2:-21467205 MS.gene069842:CDS
TGAACCTAACAGACCAAACA+AGG 0.584747 6.2:-21466477 MS.gene069842:CDS
GCATCTAGAATGGGAGAGGA+AGG 0.588001 6.2:-21466095 MS.gene069842:CDS
ATCGGCCACATACAATACAC+TGG 0.590795 6.2:+21467398 None:intergenic
CAACTTTACCGCATTCAACA+AGG 0.593925 6.2:-21466755 MS.gene069842:CDS
GTCCTTCCCCATCAAAGCAG+CGG 0.597197 6.2:+21467012 None:intergenic
GCGGTAAAGTTGTCTAGCCA+TGG 0.598297 6.2:+21466766 None:intergenic
TGGTGGAAGACATCCAGCAC+TGG 0.602023 6.2:+21467285 None:intergenic
AGATGCAGGGAACGATGTCA+AGG 0.602458 6.2:-21467461 MS.gene069842:CDS
TGGTCTGTTAGGTTCACCAA+CGG 0.604355 6.2:+21466484 None:intergenic
ATTCAACTCCTTGTTGAATG+CGG 0.607306 6.2:+21466747 None:intergenic
TCGGCCACATACAATACACT+GGG 0.609672 6.2:+21467399 None:intergenic
GAGCCCCAGTGTATTGTATG+TGG 0.610734 6.2:-21467403 MS.gene069842:CDS
CTCTATGGCAAAAGATACAG+TGG 0.614077 6.2:-21466513 MS.gene069842:CDS
GCTGTTTAAAACTGCACTTG+TGG 0.617927 6.2:-21466801 MS.gene069842:CDS
AAACTCGACATTCATGTGAA+GGG 0.624831 6.2:-21467151 MS.gene069842:CDS
GCGAGAAATCTATGACCGAA+AGG 0.633150 6.2:-21466271 MS.gene069842:CDS
ACCTGATCACCTCCTAAAGA+CGG 0.633787 6.2:+21467196 None:intergenic
CAATCCCCGCTGCTTTGATG+GGG 0.635262 6.2:-21467018 MS.gene069842:CDS
TCCTCCAGAGAAAACCCTTG+TGG 0.636938 6.2:+21465959 None:intergenic
GATAAGCTCCCGAGGTACAG+CGG 0.640895 6.2:+21465995 None:intergenic
ATATGTACATCAAATAGGAA+GGG 0.645395 6.2:-21466117 MS.gene069842:CDS
GCGGAATACATTAAGACCTG+AGG 0.646184 6.2:+21466569 None:intergenic
ATACGTCGGCTCGAGACTCG+GGG 0.647161 6.2:-21466354 MS.gene069842:CDS
TGTATACTGAGCTCTCTCGT+AGG 0.649466 6.2:+21466860 None:intergenic
CCGACGTATATTACAACAGG+TGG 0.652630 6.2:+21466368 None:intergenic
CCAGAGAGATGCTCTTCCTG+GGG 0.652795 6.2:-21467425 MS.gene069842:CDS
ATAATGCAGTCATTTATGGT+CGG 0.657786 6.2:-21466242 MS.gene069842:CDS
TCTGCAGGAGTTTGTCAGGG+AGG 0.664045 6.2:+21467089 None:intergenic
GGTGTTAACACCATAGCTAG+AGG 0.666575 6.2:+21466881 None:intergenic
TGATTGTGGGAACACCAGGA+CGG 0.673152 6.2:-21466724 MS.gene069842:CDS
CAATTCACAGTATACCACAA+GGG 0.675999 6.2:-21465973 MS.gene069842:CDS
CCACCTGTTGTAATATACGT+CGG 0.679670 6.2:-21466368 MS.gene069842:CDS
TCAATTCACAGTATACCACA+AGG 0.680822 6.2:-21465974 MS.gene069842:CDS
TCTAACATAAATGCACTCGT+CGG 0.680838 6.2:+21467243 None:intergenic
TGTGAATTGATAAGCTCCCG+AGG 0.687454 6.2:+21465987 None:intergenic
TATGGTCGGCGAGTTCCCGG+TGG 0.702170 6.2:-21466228 MS.gene069842:CDS
GTGGACTGCATGCTTCAAAG+GGG 0.709095 6.2:-21466635 MS.gene069842:CDS
AAGCTCCCGAGGTACAGCGG+CGG 0.720985 6.2:+21465998 None:intergenic
CCTTCCCCATCAAAGCAGCG+GGG 0.765535 6.2:+21467014 None:intergenic
CGGCCACATACAATACACTG+GGG 0.805673 6.2:+21467400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAATAAACAAGATTAAT+TGG + chr6.2:21466319-21466338 None:intergenic 15.0%
!!! TCAATTTCATTTTTTTTTCT+GGG - chr6.2:21466041-21466060 MS.gene069842:CDS 15.0%
!!! TTCAATTTCATTTTTTTTTC+TGG - chr6.2:21466040-21466059 MS.gene069842:CDS 15.0%
!! TACAGAAAAAAAAAAGCAAT+TGG + chr6.2:21466218-21466237 None:intergenic 20.0%
!! TATAATTCAGTGTTAACAAA+TGG - chr6.2:21466118-21466137 MS.gene069842:CDS 20.0%
!!! CTTCAAACATTTTTTTTTCT+GGG + chr6.2:21466195-21466214 None:intergenic 20.0%
!!! TTTGTATAAATTGCTTTTTG+TGG - chr6.2:21466256-21466275 MS.gene069842:CDS 20.0%
! AAGGAATATGTACATCAAAT+AGG - chr6.2:21467676-21467695 MS.gene069842:intron 25.0%
! AATATGTACATCAAATAGGA+AGG - chr6.2:21467680-21467699 MS.gene069842:intron 25.0%
! ACATATTCCTTAATCGAATT+AGG + chr6.2:21467667-21467686 None:intergenic 25.0%
! AGAAATAATGCAGTCATTTA+TGG - chr6.2:21467552-21467571 MS.gene069842:intron 25.0%
! ATATGTACATCAAATAGGAA+GGG - chr6.2:21467681-21467700 MS.gene069842:intron 25.0%
! TGAAGAAAAGATTTCAATAC+AGG + chr6.2:21466017-21466036 None:intergenic 25.0%
!! TAGTTTGGAATGTAAACAAT+CGG - chr6.2:21466463-21466482 MS.gene069842:CDS 25.0%
!!! ATCTTGTTTATTTTAGATGC+AGG - chr6.2:21466323-21466342 MS.gene069842:CDS 25.0%
!!! CAATTGCTGTTTTCAAATTT+TGG - chr6.2:21466085-21466104 MS.gene069842:CDS 25.0%
!!! GCTTCAAACATTTTTTTTTC+TGG + chr6.2:21466196-21466215 None:intergenic 25.0%
!!! TCTTGTTTATTTTAGATGCA+GGG - chr6.2:21466324-21466343 MS.gene069842:CDS 25.0%
AAAGCGATTGAAACTTTGAT+GGG + chr6.2:21465955-21465974 None:intergenic 30.0%
AACATTACCATTAGGTGAAT+CGG + chr6.2:21465981-21466000 None:intergenic 30.0%
ATAATGCAGTCATTTATGGT+CGG - chr6.2:21467556-21467575 MS.gene069842:intron 30.0%
CACATATATATTCACCGTAT+CGG + chr6.2:21466421-21466440 None:intergenic 30.0%
CTCATCGTTTACAAAAACTA+AGG + chr6.2:21467734-21467753 None:intergenic 30.0%
GAATTAGGAACATTACCATT+AGG + chr6.2:21465989-21466008 None:intergenic 30.0%
GTTAGTCGATGTATTAAAGT+CGG - chr6.2:21467774-21467793 MS.gene069842:intron 30.0%
TCATCGTTTGATGTATGTTT+CGG - chr6.2:21466883-21466902 MS.gene069842:CDS 30.0%
TTAGTCGATGTATTAAAGTC+GGG - chr6.2:21467775-21467794 MS.gene069842:intron 30.0%
! GTTAAAGCTGTTTCAATTCA+CGG - chr6.2:21467505-21467524 MS.gene069842:intron 30.0%
! TGATGATGATGTTTGTAGTT+TGG - chr6.2:21466448-21466467 MS.gene069842:CDS 30.0%
AAACTCGACATTCATGTGAA+GGG - chr6.2:21466647-21466666 MS.gene069842:CDS 35.0%
AACGCAATTACAGTTTCAAC+AGG - chr6.2:21467481-21467500 MS.gene069842:intron 35.0%
ACAAGGAGTTGAATTGATTG+TGG - chr6.2:21467060-21467079 MS.gene069842:CDS 35.0%
AGAGATACTGACAACAAATC+AGG - chr6.2:21466575-21466594 MS.gene069842:CDS 35.0%
ATTCAACTCCTTGTTGAATG+CGG + chr6.2:21467054-21467073 None:intergenic 35.0%
CAAGGAGTTGAATTGATTGT+GGG - chr6.2:21467061-21467080 MS.gene069842:CDS 35.0%
CAATTCACAGTATACCACAA+GGG - chr6.2:21467825-21467844 MS.gene069842:intron 35.0%
CTTGCACAACGAGATATTAT+TGG + chr6.2:21466863-21466882 None:intergenic 35.0%
GAAAGCGATTGAAACTTTGA+TGG + chr6.2:21465956-21465975 None:intergenic 35.0%
TAACAAAAAGCCTCTAGCTA+TGG - chr6.2:21466907-21466926 MS.gene069842:CDS 35.0%
TCAATACAGGAAGACGAATT+AGG + chr6.2:21466004-21466023 None:intergenic 35.0%
TCAATTCACAGTATACCACA+AGG - chr6.2:21467824-21467843 MS.gene069842:intron 35.0%
TCTAACATAAATGCACTCGT+CGG + chr6.2:21466558-21466577 None:intergenic 35.0%
! CTGCATTATTTCTCTCCTTT+CGG + chr6.2:21467545-21467564 None:intergenic 35.0%
! TCAGGTATTGCAGATATTCA+CGG - chr6.2:21467195-21467214 MS.gene069842:CDS 35.0%
! TGCCATCTTCTCTAAAGAAT+CGG + chr6.2:21467263-21467282 None:intergenic 35.0%
! TTTAAAACTGCACTTGTGGT+TGG - chr6.2:21467001-21467020 MS.gene069842:CDS 35.0%
AGACTTTCCTGAACCTGTAT+CGG + chr6.2:21466825-21466844 None:intergenic 40.0%
AGAGAAGATGGCAAACTCTA+TGG - chr6.2:21467270-21467289 MS.gene069842:CDS 40.0%
CAACTTTACCGCATTCAACA+AGG - chr6.2:21467043-21467062 MS.gene069842:CDS 40.0%
CAGGTGGCTTAAAATGTTTC+TGG + chr6.2:21467417-21467436 None:intergenic 40.0%
CCACCTGTTGTAATATACGT+CGG - chr6.2:21467430-21467449 MS.gene069842:CDS 40.0%
CGACATGCCTAATTCGATTA+AGG - chr6.2:21467657-21467676 MS.gene069842:intron 40.0%
CGTGAAACAGCTAGCAATTT+GGG - chr6.2:21467345-21467364 MS.gene069842:CDS 40.0%
CTCTATGGCAAAAGATACAG+TGG - chr6.2:21467285-21467304 MS.gene069842:CDS 40.0%
GAAACTCGACATTCATGTGA+AGG - chr6.2:21466646-21466665 MS.gene069842:CDS 40.0%
GATACAGTGGTTATAACCGT+TGG - chr6.2:21467298-21467317 MS.gene069842:CDS 40.0%
TAAAGAATCGGACGTTGTTG+CGG + chr6.2:21467251-21467270 None:intergenic 40.0%
TGAACCTAACAGACCAAACA+AGG - chr6.2:21467321-21467340 MS.gene069842:CDS 40.0%
TGTATTGTATGTGGCCGATA+CGG - chr6.2:21466404-21466423 MS.gene069842:CDS 40.0%
! AAACTTTGATGGGTCATCGT+TGG + chr6.2:21465945-21465964 None:intergenic 40.0%
! CCAAATTGCTAGCTGTTTCA+CGG + chr6.2:21467347-21467366 None:intergenic 40.0%
! CTTTCAACCGATTCACCTAA+TGG - chr6.2:21465971-21465990 MS.gene069842:CDS 40.0%
! GCTGTTTAAAACTGCACTTG+TGG - chr6.2:21466997-21467016 MS.gene069842:CDS 40.0%
! GTCCGATTCTTTAGAGAAGA+TGG - chr6.2:21467258-21467277 MS.gene069842:CDS 40.0%
! TATACCACAAGGGTTTTCTC+TGG - chr6.2:21467835-21467854 MS.gene069842:CDS 40.0%
!! AATAGGAAGGGCATCTAGAA+TGG - chr6.2:21467693-21467712 MS.gene069842:intron 40.0%
!! ATAGGAAGGGCATCTAGAAT+GGG - chr6.2:21467694-21467713 MS.gene069842:intron 40.0%
!! GACTTTTGTTGTCGATGAAG+TGG - chr6.2:21467144-21467163 MS.gene069842:CDS 40.0%
!! TCATGTGAAGGGTGTTGTTT+CGG - chr6.2:21466658-21466677 MS.gene069842:CDS 40.0%
AAAACTGCACTTGTGGTTGG+TGG - chr6.2:21467004-21467023 MS.gene069842:CDS 45.0%
AAAAGATCAACAAGCCGTCC+TGG + chr6.2:21467091-21467110 None:intergenic 45.0%
AAATCAGGAACGCCGTCTTT+AGG - chr6.2:21466590-21466609 MS.gene069842:CDS 45.0%
ACCTGATCACCTCCTAAAGA+CGG + chr6.2:21466605-21466624 None:intergenic 45.0%
ATCGGCCACATACAATACAC+TGG + chr6.2:21466403-21466422 None:intergenic 45.0%
ATGTTCTGCAGGAGTTTGTC+AGG + chr6.2:21466716-21466735 None:intergenic 45.0%
CATGAAGCGAACGACATAAC+CGG + chr6.2:21466686-21466705 None:intergenic 45.0%
CCGACGTATATTACAACAGG+TGG + chr6.2:21467433-21467452 None:intergenic 45.0%
CCGTGAAACAGCTAGCAATT+TGG - chr6.2:21467344-21467363 MS.gene069842:CDS 45.0%
CGATGTCAAGGTGAGTTCTA+AGG - chr6.2:21466349-21466368 MS.gene069842:CDS 45.0%
GAATTGATTGTGGGAACACC+AGG - chr6.2:21467070-21467089 MS.gene069842:CDS 45.0%
GAGCCGACGTATATTACAAC+AGG + chr6.2:21467436-21467455 None:intergenic 45.0%
GCGAGAAATCTATGACCGAA+AGG - chr6.2:21467527-21467546 MS.gene069842:intron 45.0%
GCGGAATACATTAAGACCTG+AGG + chr6.2:21467232-21467251 None:intergenic 45.0%
GGGATTGCTTGCATTTGAAC+AGG + chr6.2:21466767-21466786 None:intergenic 45.0%
GGTGTTAACACCATAGCTAG+AGG + chr6.2:21466920-21466939 None:intergenic 45.0%
TACGAGAGAGCTCAGTATAC+AGG - chr6.2:21466940-21466959 MS.gene069842:CDS 45.0%
TCGGCCACATACAATACACT+GGG + chr6.2:21466402-21466421 None:intergenic 45.0%
TGGTCTGTTAGGTTCACCAA+CGG + chr6.2:21467317-21467336 None:intergenic 45.0%
TGTATACTGAGCTCTCTCGT+AGG + chr6.2:21466941-21466960 None:intergenic 45.0%
TGTGAATTGATAAGCTCCCG+AGG + chr6.2:21467814-21467833 None:intergenic 45.0%
TGTTCTGCAGGAGTTTGTCA+GGG + chr6.2:21466715-21466734 None:intergenic 45.0%
TTTAGGAGGTGATCAGGTTC+AGG - chr6.2:21466607-21466626 MS.gene069842:CDS 45.0%
! GGTAGAGGGGTTGATCTATT+AGG - chr6.2:21467613-21467632 MS.gene069842:intron 45.0%
! GTTGTGGCTACTGGAGTTTT+GGG - chr6.2:21467592-21467611 MS.gene069842:intron 45.0%
!! AAGGGTTTTCTCTGGAGGAA+AGG - chr6.2:21467843-21467862 MS.gene069842:CDS 45.0%
!! AAGTGGACTGCATGCTTCAA+AGG - chr6.2:21467161-21467180 MS.gene069842:CDS 45.0%
!! AGGGTTTTCTCTGGAGGAAA+GGG - chr6.2:21467844-21467863 MS.gene069842:CDS 45.0%
!! AGTGGACTGCATGCTTCAAA+GGG - chr6.2:21467162-21467181 MS.gene069842:CDS 45.0%
!! TCAAAGGGGTTTTCGAGATC+AGG - chr6.2:21467177-21467196 MS.gene069842:CDS 45.0%
!!! ATGCTTGTTTTGGCCGATAC+AGG - chr6.2:21466809-21466828 MS.gene069842:CDS 45.0%
!!! CTACTGGAGTTTTGGGTAGA+GGG - chr6.2:21467599-21467618 MS.gene069842:intron 45.0%
!!! TACTGGAGTTTTGGGTAGAG+GGG - chr6.2:21467600-21467619 MS.gene069842:intron 45.0%
ACCAGAGAGATGCTCTTCCT+GGG - chr6.2:21466372-21466391 MS.gene069842:CDS 50.0%
AGATGCAGGGAACGATGTCA+AGG - chr6.2:21466337-21466356 MS.gene069842:CDS 50.0%
ATTTATGGTCGGCGAGTTCC+CGG - chr6.2:21467567-21467586 MS.gene069842:intron 50.0%
CACGCGAAATTGCTCGGAAA+AGG - chr6.2:21466971-21466990 MS.gene069842:CDS 50.0%
CAGCTGCTTCTATGTTCTGC+AGG + chr6.2:21466727-21466746 None:intergenic 50.0%
CGGCCACATACAATACACTG+GGG + chr6.2:21466401-21466420 None:intergenic 50.0%
CTGCAGAACATAGAAGCAGC+TGG - chr6.2:21466725-21466744 MS.gene069842:CDS 50.0%
GAGCCCCAGTGTATTGTATG+TGG - chr6.2:21466395-21466414 MS.gene069842:CDS 50.0%
GCGGTAAAGTTGTCTAGCCA+TGG + chr6.2:21467035-21467054 None:intergenic 50.0%
GCTTGCATTTGAACAGGCGT+AGG + chr6.2:21466761-21466780 None:intergenic 50.0%
TCCAAATCCTCATCCAGTGC+TGG - chr6.2:21466500-21466519 MS.gene069842:CDS 50.0%
TCCTCCAGAGAAAACCCTTG+TGG + chr6.2:21467842-21467861 None:intergenic 50.0%
TGATTGTGGGAACACCAGGA+CGG - chr6.2:21467074-21467093 MS.gene069842:CDS 50.0%
! AAGACATCCAGCACTGGATG+AGG + chr6.2:21466510-21466529 None:intergenic 50.0%
! ACCACAAGGGTTTTCTCTGG+AGG - chr6.2:21467838-21467857 MS.gene069842:CDS 50.0%
! GAAGAGCACGCGAAATTGCT+CGG - chr6.2:21466965-21466984 MS.gene069842:CDS 50.0%
! GCATCTAGAATGGGAGAGGA+AGG - chr6.2:21467703-21467722 MS.gene069842:intron 50.0%
! GGGGAAGGACATGCTTGTTT+TGG - chr6.2:21466799-21466818 MS.gene069842:CDS 50.0%
! GGTTGTGGCTACTGGAGTTT+TGG - chr6.2:21467591-21467610 MS.gene069842:intron 50.0%
! GTGGACTGCATGCTTCAAAG+GGG - chr6.2:21467163-21467182 MS.gene069842:CDS 50.0%
! TCCAGCACTGGATGAGGATT+TGG + chr6.2:21466504-21466523 None:intergenic 50.0%
! TCGGCTGCAGGTAGCTTTTT+AGG + chr6.2:21466539-21466558 None:intergenic 50.0%
!! AAGGGCATCTAGAATGGGAG+AGG - chr6.2:21467699-21467718 MS.gene069842:intron 50.0%
!! ACGGCCTTGTTTGGTCTGTT+AGG + chr6.2:21467328-21467347 None:intergenic 50.0%
!! AGCTGTTTCACGGCCTTGTT+TGG + chr6.2:21467337-21467356 None:intergenic 50.0%
!! ATATACGTCGGCTCGAGACT+CGG - chr6.2:21467442-21467461 MS.gene069842:CDS 50.0%
!! GCTGCAGGTAGCTTTTTAGG+TGG + chr6.2:21466536-21466555 None:intergenic 50.0%
!! GTTTTGGCCGATACAGGTTC+AGG - chr6.2:21466815-21466834 MS.gene069842:CDS 50.0%
!!! GCAGGTAGCTTTTTAGGTGG+TGG + chr6.2:21466533-21466552 None:intergenic 50.0%
!!! GCTACTGGAGTTTTGGGTAG+AGG - chr6.2:21467598-21467617 MS.gene069842:intron 50.0%
ACTCCAGTAGCCACAACCAC+CGG + chr6.2:21467589-21467608 None:intergenic 55.0%
CCAGAGAGATGCTCTTCCTG+GGG - chr6.2:21466373-21466392 MS.gene069842:CDS 55.0%
GACCAGAGAGATGCTCTTCC+TGG - chr6.2:21466371-21466390 MS.gene069842:CDS 55.0%
GATAAGCTCCCGAGGTACAG+CGG + chr6.2:21467806-21467825 None:intergenic 55.0%
GTCCTTCCCCATCAAAGCAG+CGG + chr6.2:21466789-21466808 None:intergenic 55.0%
TCAGGAACGCCGTCTTTAGG+AGG - chr6.2:21466593-21466612 MS.gene069842:CDS 55.0%
TCCTTCCCCATCAAAGCAGC+GGG + chr6.2:21466788-21466807 None:intergenic 55.0%
TCTGCAGGAGTTTGTCAGGG+AGG + chr6.2:21466712-21466731 None:intergenic 55.0%
TGGTGGAAGACATCCAGCAC+TGG + chr6.2:21466516-21466535 None:intergenic 55.0%
! AGCAATCCCCGCTGCTTTGA+TGG - chr6.2:21466778-21466797 MS.gene069842:CDS 55.0%
! CAATCCCCGCTGCTTTGATG+GGG - chr6.2:21466780-21466799 MS.gene069842:CDS 55.0%
! CACGGCTTTGTCACAACCTC+AGG - chr6.2:21467213-21467232 MS.gene069842:CDS 55.0%
! GCAATCCCCGCTGCTTTGAT+GGG - chr6.2:21466779-21466798 MS.gene069842:CDS 55.0%
! GCCGTCTTTAGGAGGTGATC+AGG - chr6.2:21466601-21466620 MS.gene069842:CDS 55.0%
! TAAATGCACTCGTCGGCTGC+AGG + chr6.2:21466551-21466570 None:intergenic 55.0%
!! GAAGGGTGTTGTTTCGGCAC+CGG - chr6.2:21466664-21466683 MS.gene069842:CDS 55.0%
!! TATACGTCGGCTCGAGACTC+GGG - chr6.2:21467443-21467462 MS.gene069842:CDS 55.0%
!! TGTGGTTGGTGGTGATGCCA+TGG - chr6.2:21467015-21467034 MS.gene069842:CDS 55.0%
ACAATACACTGGGGCTCCCC+AGG + chr6.2:21466392-21466411 None:intergenic 60.0%
CCTTCCCCATCAAAGCAGCG+GGG + chr6.2:21466787-21466806 None:intergenic 60.0%
CTCCAGTAGCCACAACCACC+GGG + chr6.2:21467588-21467607 None:intergenic 60.0%
GAGACTCGGGGCAGATCTCT+TGG - chr6.2:21467456-21467475 MS.gene069842:CDS 60.0%
TTCCCGGTGGTTGTGGCTAC+TGG - chr6.2:21467583-21467602 MS.gene069842:intron 60.0%
!! ATACGTCGGCTCGAGACTCG+GGG - chr6.2:21467444-21467463 MS.gene069842:CDS 60.0%
!! CCCCAGGAAGAGCATCTCTC+TGG + chr6.2:21466376-21466395 None:intergenic 60.0%
AAGCTCCCGAGGTACAGCGG+CGG + chr6.2:21467803-21467822 None:intergenic 65.0%
TATGGTCGGCGAGTTCCCGG+TGG - chr6.2:21467570-21467589 MS.gene069842:intron 65.0%
! CCCCGCTGCTTTGATGGGGA+AGG - chr6.2:21466784-21466803 MS.gene069842:CDS 65.0%
CGGCGAGTTCCCGGTGGTTG+TGG - chr6.2:21467576-21467595 MS.gene069842:intron 70.0%
! CGGGTGCCGCCGCTGTACCT+CGG - chr6.2:21467794-21467813 MS.gene069842:intron 75.0%
! GGGTGCCGCCGCTGTACCTC+GGG - chr6.2:21467795-21467814 MS.gene069842:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 21465929 21467891 21465929 ID=MS.gene069842
chr6.2 mRNA 21465929 21467891 21465929 ID=MS.gene069842.t1;Parent=MS.gene069842
chr6.2 exon 21467828 21467891 21467828 ID=MS.gene069842.t1.exon1;Parent=MS.gene069842.t1
chr6.2 CDS 21467828 21467891 21467828 ID=cds.MS.gene069842.t1;Parent=MS.gene069842.t1
chr6.2 exon 21465929 21467481 21465929 ID=MS.gene069842.t1.exon2;Parent=MS.gene069842.t1
chr6.2 CDS 21465929 21467481 21465929 ID=cds.MS.gene069842.t1;Parent=MS.gene069842.t1
Gene Sequence

>MS.gene069842

ATGGTTGATGATTCCAACGATGACCCATCAAAGTTTCAATCGCTTTCAACCGATTCACCTAATGGTAATGTTCCTAATTCGTCTTCCTGTATTGAAATCTTTTCTTCAATATTCAATTTCATTTTTTTTTCTGGGTATTGTTGATTGAATATATTTCAATTGCTGTTTTCAAATTTTGGTTTGATTCTGTATAATTCAGTGTTAACAAATGGTAAAATTGCTTTTTGTATAAGTTGTGATATGTTAAAGCAATTACAACAATACCCAGAAAAAAAAATGTTTGAAGCCAATTGCTTTTTTTTTTCTGTATAATTTATTCAATTTCATTTTGTATAAATTGCTTTTTGTGGACAAGTTGCGATATGTTAAGTCTCTCAAAATACGAAGCCAATTAATCTTGTTTATTTTAGATGCAGGGAACGATGTCAAGGTGAGTTCTAAGGACCAGAGAGATGCTCTTCCTGGGGAGCCCCAGTGTATTGTATGTGGCCGATACGGTGAATATATATGTGATGAAACTGATGATGATGTTTGTAGTTTGGAATGTAAACAATCGGTACTATCTCGAATTTCCAAATCCTCATCCAGTGCTGGATGTCTTCCACCACCTAAAAAGCTACCTGCAGCCGACGAGTGCATTTATGTTAGAGATACTGACAACAAATCAGGAACGCCGTCTTTAGGAGGTGATCAGGTTCAGGCTGAATTGCTTAGAAAGAAACTCGACATTCATGTGAAGGGTGTTGTTTCGGCACCGGTTATGTCGTTCGCTTCATGTAACCTCCCTGACAAACTCCTGCAGAACATAGAAGCAGCTGGTTATGAGATGCCTACGCCTGTTCAAATGCAAGCAATCCCCGCTGCTTTGATGGGGAAGGACATGCTTGTTTTGGCCGATACAGGTTCAGGAAAGTCTGCTTCGTTTCTTATTCCAATAATATCTCGTTGTGCAAGTCATCGTTTGATGTATGTTTCGGATAACAAAAAGCCTCTAGCTATGGTGTTAACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCACGCGAAATTGCTCGGAAAAGGTTTGCTGTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTAGACAACTTTACCGCATTCAACAAGGAGTTGAATTGATTGTGGGAACACCAGGACGGCTTGTTGATCTTTTAACAAAAAATGAGATTGATTTAGATGACGTGACGACTTTTGTTGTCGATGAAGTGGACTGCATGCTTCAAAGGGGTTTTCGAGATCAGGTATTGCAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTATTCCGCAACAACGTCCGATTCTTTAGAGAAGATGGCAAACTCTATGGCAAAAGATACAGTGGTTATAACCGTTGGTGAACCTAACAGACCAAACAAGGCCGTGAAACAGCTAGCAATTTGGGTCGAGTCGAAACAAAAGAAGCAGAAACTGTTTGATATTTTAAAAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATACGTCGGCTCGAGACTCGGGGCAGATCTCTTGGCAAACGCAATTACAGTTTCAACAGGAGTTAAAGCTGTTTCAATTCACGGCGAGAAATCTATGACCGAAAGGAGAGAAATAATGCAGTCATTTATGGTCGGCGAGTTCCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGCGTAAGACAAGTTATTGTATTCGACATGCCTAATTCGATTAAGGAATATGTACATCAAATAGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGCCTTAGTTTTTGTAAACGATGAGAATAAGAATGTTTTTGCAGAGTTAGTCGATGTATTAAAGTCGGGTGCCGCCGCTGTACCTCGGGAGCTTATCAATTCACAGTATACCACAAGGGTTTTCTCTGGAGGAAAGGGTTCAAAGAAAAGAAAATATAGATGA
Protein sequence

>MS.gene069842.t1

MVDDSNDDPSKFQSLSTDSPNDAGNDVKVSSKDQRDALPGEPQCIVCGRYGEYICDETDDDVCSLECKQSVLSRISKSSSSAGCLPPPKKLPAADECIYVRDTDNKSGTPSLGGDQVQAELLRKKLDIHVKGVVSAPVMSFASCNLPDKLLQNIEAAGYEMPTPVQMQAIPAALMGKDMLVLADTGSGKSASFLIPIISRCASHRLMYVSDNKKPLAMVLTPTRELSIQVEEHAKLLGKGLLFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKNEIDLDDVTTFVVDEVDCMLQRGFRDQVLQIFTALSQPQVLMYSATTSDSLEKMANSMAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILKSQKHFKPPVVIYVGSRLGADLLANAITVSTGVKAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQALVFVNDENKNVFAELVDVLKSGAAAVPRELINSQYTTRVFSGGKGSKKRKYR