AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034071

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034071.t1 MTR_4g010565 100.000 426 0 0 1 426 79 504 0.0 879
MS.gene034071.t1 MTR_1g012420 92.365 406 29 1 23 426 22 427 0.0 770
MS.gene034071.t1 MTR_3g107420 89.953 428 40 2 1 426 1 427 0.0 766
MS.gene034071.t1 MTR_3g107420 89.474 247 23 2 1 245 1 246 9.62e-150 427
MS.gene034071.t1 MTR_7g076820 36.806 432 257 8 1 423 97 521 1.34e-82 263
MS.gene034071.t1 MTR_7g076800 36.806 432 257 8 1 423 88 512 1.77e-82 262
MS.gene034071.t1 MTR_7g076830 37.164 409 245 7 16 423 117 514 1.33e-81 260
MS.gene034071.t1 MTR_2g039960 39.946 368 215 6 52 418 47 409 1.11e-78 249
MS.gene034071.t1 MTR_2g099620 39.946 368 215 6 52 418 31 393 5.72e-77 244
MS.gene034071.t1 MTR_2g099620 39.946 368 215 6 52 418 47 409 5.92e-77 245
MS.gene034071.t1 MTR_4g125970 37.845 399 241 7 21 418 17 409 1.04e-76 244
MS.gene034071.t1 MTR_4g125970 37.845 399 241 7 21 418 34 426 3.28e-76 244
MS.gene034071.t1 MTR_8g018400 39.130 368 218 6 52 418 47 409 1.23e-75 241
MS.gene034071.t1 MTR_2g438110 36.410 390 234 9 31 418 25 402 8.03e-74 237
MS.gene034071.t1 MTR_3g467550 33.148 359 221 6 47 390 118 472 3.44e-60 205
MS.gene034071.t1 MTR_7g056830 33.598 378 230 8 47 416 11 375 9.23e-60 201
MS.gene034071.t1 MTR_6g082080 33.333 378 231 8 47 416 11 375 1.87e-59 200
MS.gene034071.t1 MTR_3g467550 33.053 357 220 6 49 390 89 441 5.89e-59 201
MS.gene034071.t1 MTR_2g100230 33.427 356 224 7 47 394 97 447 6.79e-58 197
MS.gene034071.t1 MTR_4g134170 34.501 371 204 6 52 392 293 654 5.68e-57 199
MS.gene034071.t1 MTR_6g005320 33.962 371 204 7 52 392 255 614 1.21e-54 192
MS.gene034071.t1 MTR_3g083690 32.333 433 260 10 12 418 109 534 1.86e-53 188
MS.gene034071.t1 MTR_4g049910 32.099 405 244 12 33 417 41 434 4.95e-53 184
MS.gene034071.t1 MTR_1g054630 35.143 350 204 7 65 394 173 519 6.41e-52 184
MS.gene034071.t1 MTR_2g066050 31.183 372 243 9 44 408 51 416 1.12e-51 181
MS.gene034071.t1 MTR_4g105100 29.891 368 240 7 35 394 196 553 1.49e-51 183
MS.gene034071.t1 MTR_4g114120 35.244 349 200 7 68 393 162 507 1.62e-51 184
MS.gene034071.t1 MTR_3g049990 31.830 399 260 8 16 406 120 514 1.72e-51 185
MS.gene034071.t1 MTR_2g041140 31.903 373 245 6 40 406 135 504 1.55e-50 182
MS.gene034071.t1 MTR_2g032630 30.894 369 238 8 31 392 486 844 1.87e-50 184
MS.gene034071.t1 MTR_3g467550 31.953 338 205 7 46 365 117 447 9.23e-50 175
MS.gene034071.t1 MTR_6g005550 31.063 367 236 9 31 390 155 511 1.03e-49 179
MS.gene034071.t1 MTR_0915s0010 35.540 287 178 5 59 344 2 282 2.05e-49 169
MS.gene034071.t1 MTR_1g095810 30.939 362 227 8 47 392 146 500 3.81e-49 176
MS.gene034071.t1 MTR_7g109720 31.564 358 225 10 47 392 233 582 1.79e-48 176
MS.gene034071.t1 MTR_1g061970 29.782 413 236 12 44 417 78 475 6.47e-48 171
MS.gene034071.t1 MTR_3g449250 30.184 381 235 10 52 416 96 461 1.53e-46 168
MS.gene034071.t1 MTR_3g449250 30.184 381 235 10 52 416 96 461 1.98e-46 168
MS.gene034071.t1 MTR_1g026830 29.427 384 240 10 47 414 148 516 6.18e-46 167
MS.gene034071.t1 MTR_8g027775 30.366 382 239 10 35 392 86 464 3.44e-45 165
MS.gene034071.t1 MTR_3g071620 29.716 387 241 7 41 399 9 392 4.70e-45 165
MS.gene034071.t1 MTR_5g090120 30.366 382 240 10 55 422 90 459 4.96e-45 165
MS.gene034071.t1 MTR_2g007000 31.534 352 224 8 52 392 510 855 8.33e-45 167
MS.gene034071.t1 MTR_7g100820 32.164 342 219 8 56 392 144 477 8.40e-45 164
MS.gene034071.t1 MTR_8g027780 30.811 370 234 9 42 392 102 468 9.86e-45 164
MS.gene034071.t1 MTR_8g027770 29.206 428 271 10 26 426 183 605 3.38e-44 163
MS.gene034071.t1 MTR_4g079320 30.704 355 233 11 46 393 19 367 2.69e-43 162
MS.gene034071.t1 MTR_6g033070 30.025 403 254 11 37 423 131 521 9.86e-42 155
MS.gene034071.t1 MTR_8g097000 28.472 432 266 9 3 415 257 664 6.61e-41 155
MS.gene034071.t1 MTR_5g027840 31.792 346 211 7 64 392 120 457 7.14e-41 152
MS.gene034071.t1 MTR_8g018370 30.792 341 209 7 76 415 3 317 1.09e-40 147
MS.gene034071.t1 MTR_4g112340 30.747 348 220 11 58 391 109 449 1.58e-40 152
MS.gene034071.t1 MTR_7g057250 27.152 453 252 13 46 425 163 610 1.78e-40 154
MS.gene034071.t1 MTR_2g055850 28.611 360 243 8 42 391 87 442 7.37e-40 150
MS.gene034071.t1 MTR_8g027780 30.473 338 213 9 42 360 102 436 5.76e-36 137
MS.gene034071.t1 MTR_2g063080 25.995 427 253 8 44 411 107 529 1.13e-35 138
MS.gene034071.t1 MTR_1g046570 28.061 392 241 10 64 419 9 395 1.67e-35 135
MS.gene034071.t1 MTR_5g092560 27.746 346 222 10 63 391 93 427 1.98e-35 139
MS.gene034071.t1 MTR_4g105100 27.385 325 218 7 35 351 196 510 2.17e-34 134
MS.gene034071.t1 MTR_4g059460 28.155 412 203 16 64 391 63 465 8.99e-34 133
MS.gene034071.t1 MTR_2g043360 27.670 412 205 16 64 391 60 462 3.29e-33 132
MS.gene034071.t1 MTR_6g056080 30.435 322 202 11 82 388 139 453 5.02e-32 129
MS.gene034071.t1 MTR_1g102410 27.200 375 235 10 45 388 43 410 3.51e-31 126
MS.gene034071.t1 MTR_4g068990 27.794 349 217 13 63 391 93 426 3.64e-31 126
MS.gene034071.t1 MTR_5g069330 26.446 363 254 8 47 402 8 364 7.62e-31 123
MS.gene034071.t1 MTR_5g069330 26.446 363 254 8 47 402 4 360 7.65e-31 123
MS.gene034071.t1 MTR_6g039840 26.471 374 236 12 47 392 111 473 2.02e-30 124
MS.gene034071.t1 MTR_3g118120 27.820 399 228 12 37 395 131 509 6.98e-27 113
MS.gene034071.t1 MTR_4g112320 32.189 233 145 7 167 391 40 267 7.51e-27 111
MS.gene034071.t1 MTR_1g022305 26.524 328 174 10 68 392 26 289 6.63e-25 106
MS.gene034071.t1 MTR_1g083130 25.185 405 235 10 46 393 26 419 1.23e-24 106
MS.gene034071.t1 MTR_4g077370 32.487 197 127 5 46 239 250 443 2.91e-23 101
MS.gene034071.t1 MTR_4g077370 29.327 208 112 6 46 245 2 182 6.87e-15 76.6
MS.gene034071.t1 MTR_2g043360 27.333 300 142 11 168 394 51 347 6.60e-23 101
MS.gene034071.t1 MTR_4g131750 24.000 400 252 9 55 414 91 478 1.08e-22 100
MS.gene034071.t1 MTR_6g039840 26.578 301 191 10 111 392 8 297 1.51e-22 100
MS.gene034071.t1 MTR_5g092560 28.293 205 138 5 193 391 15 216 2.56e-21 96.7
MS.gene034071.t1 MTR_4g068990 29.187 209 130 7 193 391 15 215 9.49e-20 92.0
MS.gene034071.t1 MTR_0427s0010 29.048 210 111 6 223 417 23 209 3.89e-19 86.3
MS.gene034071.t1 MTR_8g032230 36.424 151 86 4 47 196 11 152 2.31e-18 82.4
MS.gene034071.t1 MTR_5g077690 24.455 413 234 13 52 392 35 441 1.29e-17 85.1
MS.gene034071.t1 MTR_8g007360 72.000 50 12 1 128 177 10 57 1.27e-15 72.0
MS.gene034071.t1 MTR_8g042690 22.626 358 257 8 46 391 20 369 9.11e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034071.t1 AT5G11170 90.867 427 38 1 1 426 1 427 0.0 772
MS.gene034071.t1 AT5G11200 90.867 427 38 1 1 426 1 427 0.0 772
MS.gene034071.t1 AT5G11200 82.906 468 38 2 1 426 1 468 0.0 751
MS.gene034071.t1 AT5G11170 92.733 344 25 0 83 426 1 344 0.0 666
MS.gene034071.t1 AT5G11200 73.045 486 71 5 1 426 1 486 0.0 661
MS.gene034071.t1 AT4G00660 38.554 415 246 7 11 423 96 503 8.33e-87 273
MS.gene034071.t1 AT4G00660 38.554 415 246 7 11 423 96 503 8.33e-87 273
MS.gene034071.t1 AT2G45810 37.650 417 251 7 9 423 117 526 9.77e-87 274
MS.gene034071.t1 AT3G61240 37.805 410 246 7 16 423 94 496 4.59e-86 271
MS.gene034071.t1 AT3G61240 37.805 410 246 7 16 423 94 496 4.59e-86 271
MS.gene034071.t1 AT1G72730 39.402 368 217 6 52 418 48 410 1.02e-78 249
MS.gene034071.t1 AT3G13920 39.108 381 225 7 39 418 34 408 1.21e-77 247
MS.gene034071.t1 AT3G13920 39.108 381 225 7 39 418 24 398 1.89e-77 246
MS.gene034071.t1 AT1G54270 38.845 381 226 7 39 418 34 408 1.65e-75 241
MS.gene034071.t1 AT3G13920 38.845 381 221 8 39 418 34 403 3.27e-75 240
MS.gene034071.t1 AT3G19760 36.436 376 231 7 45 418 35 404 6.39e-75 239
MS.gene034071.t1 AT3G13920 40.000 355 207 6 39 392 34 383 3.99e-74 238
MS.gene034071.t1 AT3G13920 40.000 355 207 6 39 392 38 387 5.22e-74 238
MS.gene034071.t1 AT1G54270 38.583 381 222 8 39 418 34 403 5.33e-73 234
MS.gene034071.t1 AT1G51380 36.388 371 228 7 47 415 24 388 1.84e-71 230
MS.gene034071.t1 AT3G53110 32.824 393 235 11 44 414 90 475 3.90e-61 206
MS.gene034071.t1 AT1G55150 34.540 359 216 9 47 394 101 451 7.42e-58 197
MS.gene034071.t1 AT1G55150 34.540 359 216 9 47 394 126 476 1.51e-57 197
MS.gene034071.t1 AT5G60990 31.701 388 234 9 47 416 11 385 2.17e-56 192
MS.gene034071.t1 AT4G16630 31.469 429 266 13 6 417 126 543 1.15e-55 197
MS.gene034071.t1 AT5G63120 31.921 354 228 9 47 392 167 515 9.85e-55 191
MS.gene034071.t1 AT2G33730 33.155 374 220 7 52 400 320 688 6.07e-54 191
MS.gene034071.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034071.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034071.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034071.t1 AT3G01540 30.918 414 259 13 25 418 126 532 1.13e-52 186
MS.gene034071.t1 AT1G16280 33.134 335 214 7 64 392 77 407 2.16e-51 180
MS.gene034071.t1 AT5G26742 31.871 342 217 5 64 394 121 457 1.58e-50 182
MS.gene034071.t1 AT5G26742 31.871 342 217 5 64 394 121 457 1.59e-50 182
MS.gene034071.t1 AT3G06480 31.793 368 236 7 31 392 426 784 1.89e-50 184
MS.gene034071.t1 AT5G14610 31.921 354 229 9 44 390 228 576 2.45e-50 181
MS.gene034071.t1 AT5G14610 32.479 351 225 9 47 390 163 508 6.31e-50 179
MS.gene034071.t1 AT5G14610 32.479 351 225 9 47 390 163 508 6.49e-50 179
MS.gene034071.t1 AT5G14610 32.479 351 225 9 47 390 171 516 1.01e-49 179
MS.gene034071.t1 AT5G26742 32.416 327 205 5 79 394 43 364 3.72e-49 177
MS.gene034071.t1 AT4G33370 32.597 362 221 8 47 392 99 453 4.91e-49 175
MS.gene034071.t1 AT3G58570 35.652 345 199 8 68 392 169 510 9.33e-49 176
MS.gene034071.t1 AT3G22310 30.400 375 248 6 49 416 120 488 1.73e-48 174
MS.gene034071.t1 AT3G22310 30.400 375 248 6 49 416 120 488 2.12e-48 174
MS.gene034071.t1 AT3G22330 30.295 373 245 8 52 416 111 476 4.04e-48 174
MS.gene034071.t1 AT1G28180 33.841 328 200 7 75 392 3 323 5.14e-48 168
MS.gene034071.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034071.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034071.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034071.t1 AT2G47330 31.358 405 243 13 15 392 183 579 7.38e-48 175
MS.gene034071.t1 AT5G14610 31.953 338 218 9 60 390 45 377 1.12e-47 171
MS.gene034071.t1 AT5G14610 31.953 338 218 9 60 390 45 377 1.12e-47 171
MS.gene034071.t1 AT5G51280 31.044 364 224 9 47 392 148 502 3.16e-47 171
MS.gene034071.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034071.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034071.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034071.t1 AT1G20920 30.682 352 227 9 52 392 198 543 7.63e-46 169
MS.gene034071.t1 AT5G08610 30.412 388 250 6 23 392 360 745 1.63e-45 169
MS.gene034071.t1 AT1G71370 30.899 356 229 6 52 391 19 373 1.83e-45 166
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034071.t1 AT5G63630 29.945 364 235 6 47 392 56 417 4.21e-45 164
MS.gene034071.t1 AT1G31970 33.138 341 212 7 65 392 134 471 7.11e-45 164
MS.gene034071.t1 AT5G63630 29.945 364 235 6 47 392 250 611 4.27e-44 164
MS.gene034071.t1 AT1G77030 30.114 352 235 10 47 392 30 376 3.54e-43 162
MS.gene034071.t1 AT5G08620 29.293 396 259 7 16 392 50 443 2.67e-42 157
MS.gene034071.t1 AT3G09720 31.014 345 219 9 56 392 152 485 4.75e-41 153
MS.gene034071.t1 AT3G09720 31.014 345 219 9 56 392 152 485 4.75e-41 153
MS.gene034071.t1 AT3G02065 30.387 362 226 9 47 392 112 463 1.14e-40 151
MS.gene034071.t1 AT3G02065 30.387 362 226 9 47 392 112 463 1.14e-40 151
MS.gene034071.t1 AT5G05450 27.978 361 238 5 52 391 23 382 2.36e-40 152
MS.gene034071.t1 AT3G18600 30.792 341 218 12 59 388 103 436 7.10e-40 150
MS.gene034071.t1 AT1G51380 35.714 252 155 6 47 296 24 270 5.27e-39 142
MS.gene034071.t1 AT1G12770 26.119 402 240 6 44 389 109 509 2.54e-38 145
MS.gene034071.t1 AT1G12770 26.119 402 240 6 44 389 109 509 2.54e-38 145
MS.gene034071.t1 AT3G09620 30.484 351 200 10 52 392 404 720 4.35e-38 147
MS.gene034071.t1 AT3G09620 30.484 351 200 10 52 392 403 719 4.39e-38 147
MS.gene034071.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034071.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034071.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034071.t1 AT5G63120 30.032 313 206 9 47 351 167 474 1.43e-37 142
MS.gene034071.t1 AT3G16840 28.414 454 246 11 45 425 190 637 2.47e-37 145
MS.gene034071.t1 AT3G16840 28.414 454 246 11 45 425 191 638 2.82e-37 144
MS.gene034071.t1 AT5G65900 28.933 356 230 11 47 388 156 502 5.99e-37 143
MS.gene034071.t1 AT3G02065 30.448 335 207 9 74 392 2 326 1.92e-36 137
MS.gene034071.t1 AT3G06480 29.762 336 221 7 31 360 426 752 2.88e-36 141
MS.gene034071.t1 AT1G63250 27.913 412 265 10 6 392 288 692 4.58e-36 141
MS.gene034071.t1 AT5G62190 29.082 392 254 11 50 424 101 485 3.21e-35 138
MS.gene034071.t1 AT5G54910 28.165 387 250 13 26 394 49 425 6.67e-35 137
MS.gene034071.t1 AT5G14610 30.267 337 221 10 34 363 158 487 7.32e-35 135
MS.gene034071.t1 AT2G07750 27.427 412 267 11 6 392 335 739 1.03e-33 134
MS.gene034071.t1 AT2G40700 27.873 409 210 11 64 391 50 454 2.84e-32 129
MS.gene034071.t1 AT1G51380 35.111 225 140 5 47 269 24 244 1.10e-31 122
MS.gene034071.t1 AT1G51380 35.111 225 140 5 47 269 24 244 1.36e-31 122
MS.gene034071.t1 AT4G09730 27.614 373 233 11 47 392 114 476 3.35e-31 126
MS.gene034071.t1 AT5G19210 25.635 394 243 11 18 380 60 434 1.21e-27 114
MS.gene034071.t1 AT4G15850 27.073 410 228 12 52 393 38 444 2.24e-25 108
MS.gene034071.t1 AT3G06980 24.524 420 260 12 9 391 348 747 2.19e-24 106
MS.gene034071.t1 AT4G34910 25.065 387 234 9 46 380 47 429 2.50e-24 105
MS.gene034071.t1 AT1G71280 29.063 320 178 13 52 353 20 308 1.01e-23 101
MS.gene034071.t1 AT1G71280 29.063 320 178 13 52 353 20 308 4.26e-23 101
MS.gene034071.t1 AT5G19210 24.231 260 168 6 145 380 23 277 7.44e-14 72.4
MS.gene034071.t1 AT5G19210 24.231 260 168 6 145 380 23 277 7.44e-14 72.4

Find 88 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGAGCCATTGTAGATTC+AGG 0.254688 4.4:-88771849 MS.gene034071:CDS
GACTCTTCATGGTCTTGTTC+AGG 0.261990 4.4:-88769371 MS.gene034071:intron
CCATCAATTTGCATACATTC+TGG 0.285699 4.4:-88769120 MS.gene034071:CDS
GTCATTTGCCAAGCAAAATC+TGG 0.314855 4.4:-88770831 MS.gene034071:CDS
CACAAGAGAACTAGCTTATC+AGG 0.318557 4.4:-88770721 MS.gene034071:intron
AAGACCATGAAGAGTCAATT+TGG 0.351581 4.4:+88769378 None:intergenic
GTCGGTAGAGCTGGTAGATT+TGG 0.360968 4.4:-88767451 MS.gene034071:CDS
CTACGTTGGGATCCATAGTT+CGG 0.364465 4.4:-88771904 MS.gene034071:CDS
CACATTGTTGTTGGAACACC+TGG 0.373009 4.4:-88770429 MS.gene034071:CDS
CCAGAATGTATGCAAATTGA+TGG 0.376590 4.4:+88769120 None:intergenic
TGACTCTGAAGTTCTTAATC+AGG 0.377300 4.4:-88767389 MS.gene034071:intron
GTGGAGGTGTCAATTTGTTC+AGG 0.377618 4.4:+88767218 None:intergenic
CAGCAAATTGATCCTGTTCC+TGG 0.384946 4.4:-88770771 MS.gene034071:CDS
GTCCATTCCTAAAATTGCTT+GGG 0.387301 4.4:+88770854 None:intergenic
CAAGGTCCTTATCTCTAGTC+AGG 0.399693 4.4:+88770394 None:intergenic
ACATCATCACTTGTTTATCA+TGG 0.400130 4.4:+88770173 None:intergenic
TAGGTTTGAGGTTGATATAA+AGG 0.405007 4.4:-88767246 MS.gene034071:CDS
GAGGCCAAATTGACTCTTCA+TGG 0.406230 4.4:-88769382 MS.gene034071:CDS
GTCACAAAACTTGATCAATT+AGG 0.410712 4.4:+88766899 None:intergenic
AGTCTCGAAATCCCGAACTA+TGG 0.410983 4.4:+88771892 None:intergenic
TGTTGTGCAGGGGCTACGTT+GGG 0.411662 4.4:-88771917 MS.gene034071:intron
TACGTTGGGATCCATAGTTC+GGG 0.412375 4.4:-88771903 MS.gene034071:CDS
TCCGAGCCATTGTAGATTCA+GGG 0.416662 4.4:-88771848 MS.gene034071:CDS
AATTGATCCTGTTCCTGGTC+AGG 0.417735 4.4:-88770766 MS.gene034071:CDS
TTCAGCTTACGATTCTTCTC+TGG 0.442230 4.4:+88769243 None:intergenic
AACTGGTAGGTCGGTAGAGC+TGG 0.447423 4.4:-88767460 MS.gene034071:intron
GGAGAAGCTCTGGTTTCAAC+AGG 0.450921 4.4:+88771868 None:intergenic
CGTCCATTCCTAAAATTGCT+TGG 0.451912 4.4:+88770853 None:intergenic
CATCATCACTTGTTTATCAT+GGG 0.463946 4.4:+88770174 None:intergenic
ATCATCTACATAAATTTCCA+TGG 0.469432 4.4:+88769405 None:intergenic
AGATAGGTATCAGCAGAATC+AGG 0.470818 4.4:+88767625 None:intergenic
TCAGGTGCAATCTAGGTTTG+AGG 0.476362 4.4:-88767258 MS.gene034071:intron
GCTGCAACCTGACCAGGAAC+AGG 0.478885 4.4:+88770759 None:intergenic
TGCTGAACCTCTCAACTTCG+TGG 0.490700 4.4:+88770538 None:intergenic
TTTCAGATTGAAGCGATACA+AGG 0.493825 4.4:-88767746 MS.gene034071:intron
ACAATGGCTCGGAGAAGCTC+TGG 0.495080 4.4:+88771858 None:intergenic
CTGCTGATACCTATCTTCAC+AGG 0.495663 4.4:-88767618 MS.gene034071:CDS
AGCACTTACCCTGTGAAGAT+AGG 0.504586 4.4:+88767609 None:intergenic
GAGTGCCCACACATTGTTGT+TGG 0.508601 4.4:-88770438 MS.gene034071:CDS
CTGGAATGTCACAAGAAGAA+AGG 0.515744 4.4:-88769101 MS.gene034071:intron
CTATGGTGGTGTCAACATCA+AGG 0.524822 4.4:-88770484 MS.gene034071:CDS
GCTGGTAGATTTGGCACCAA+GGG 0.527211 4.4:-88767442 MS.gene034071:CDS
ACAAGTGCTGCAACCTGACC+AGG 0.529516 4.4:+88770753 None:intergenic
TTGTTGTGCAGGGGCTACGT+TGG 0.530806 4.4:-88771918 MS.gene034071:intron
TGATGAATGTGACAAGATGC+TGG 0.533632 4.4:-88770343 MS.gene034071:CDS
TTGCCAAGCAAAATCTGGGA+TGG 0.544090 4.4:-88770826 MS.gene034071:CDS
CTGACTAGAGATAAGGACCT+TGG 0.544589 4.4:-88770393 MS.gene034071:CDS
TAGTAAAACTTGCCTTCTGA+AGG 0.545476 4.4:+88771816 None:intergenic
GGGTTTGAGCATCCTTCAGA+AGG 0.549144 4.4:-88771828 MS.gene034071:intron
TCATTTGCCAAGCAAAATCT+GGG 0.556430 4.4:-88770830 MS.gene034071:CDS
AGCTGGTAGATTTGGCACCA+AGG 0.557173 4.4:-88767443 MS.gene034071:CDS
CTCGTGGCAACCGATTTAGT+AGG 0.561671 4.4:-88767697 MS.gene034071:CDS
CAGAATGTATGCAAATTGAT+GGG 0.563982 4.4:+88769121 None:intergenic
TCTTGCCCTGACTAGAGATA+AGG 0.564398 4.4:-88770400 MS.gene034071:CDS
TGCCAAGCAAAATCTGGGAT+GGG 0.564980 4.4:-88770825 MS.gene034071:CDS
TCCATTCCTAAAATTGCTTG+GGG 0.565327 4.4:+88770855 None:intergenic
GGCAACCGATTTAGTAGGGA+GGG 0.566914 4.4:-88767692 MS.gene034071:CDS
GACAAGATGCTGGAATCACT+TGG 0.566919 4.4:-88770333 MS.gene034071:intron
AAAAGTAATTGCAAGCCCCT+TGG 0.567368 4.4:+88767426 None:intergenic
CGATACAAGGGCTTCAAAGA+GGG 0.568834 4.4:-88767733 MS.gene034071:CDS
TCGTGGCAACCGATTTAGTA+GGG 0.570668 4.4:-88767696 MS.gene034071:CDS
ACCCTGAATCTACAATGGCT+CGG 0.572434 4.4:+88771847 None:intergenic
GGTGTTCCAACAACAATGTG+TGG 0.577454 4.4:+88770432 None:intergenic
CAACCGATTTAGTAGGGAGG+GGG 0.579596 4.4:-88767690 MS.gene034071:CDS
TCATCTACATAAATTTCCAT+GGG 0.581419 4.4:+88769406 None:intergenic
GCAACCGATTTAGTAGGGAG+GGG 0.585593 4.4:-88767691 MS.gene034071:CDS
AGATTTGCCACGAAGTTGAG+AGG 0.588345 4.4:-88770545 MS.gene034071:CDS
GGAAATTTATGTAGATGATG+AGG 0.602038 4.4:-88769401 MS.gene034071:CDS
GCGATACAAGGGCTTCAAAG+AGG 0.604199 4.4:-88767734 MS.gene034071:CDS
AAGGTCCTTATCTCTAGTCA+GGG 0.605894 4.4:+88770395 None:intergenic
CTCAAACCCTGAATCTACAA+TGG 0.606652 4.4:+88771842 None:intergenic
ACCTTGGTTTGAAGAATGTG+AGG 0.606908 4.4:-88770377 MS.gene034071:CDS
GTCAGGGCAAGAATCCTCCC+AGG 0.611803 4.4:+88770411 None:intergenic
ATCATCACTTGTTTATCATG+GGG 0.613006 4.4:+88770175 None:intergenic
GATACAAGGGCTTCAAAGAG+GGG 0.617527 4.4:-88767732 MS.gene034071:CDS
GTGTTCCAACAACAATGTGT+GGG 0.623994 4.4:+88770433 None:intergenic
GCCTCACATTCTTCAAACCA+AGG 0.633068 4.4:+88770376 None:intergenic
TTCAGATTGAAGCGATACAA+GGG 0.636996 4.4:-88767745 MS.gene034071:intron
AAGTATCTTACTGTATGTGG+AGG 0.637443 4.4:+88767202 None:intergenic
GATAAGCTAGTTCTCTTGTG+TGG 0.648872 4.4:+88770724 None:intergenic
CTGGTAGATTTGGCACCAAG+GGG 0.659086 4.4:-88767441 MS.gene034071:CDS
TGCTGATACCTATCTTCACA+GGG 0.659100 4.4:-88767617 MS.gene034071:intron
ACATTGTTGTTGGAACACCT+GGG 0.674278 4.4:-88770428 MS.gene034071:CDS
GGGGAAGCAGAGAATTCTCG+TGG 0.676806 4.4:-88767713 MS.gene034071:CDS
GAAAGATACTGAAGTTTACG+AGG 0.689385 4.4:-88773638 MS.gene034071:CDS
CCATTCCTAAAATTGCTTGG+GGG 0.689622 4.4:+88770856 None:intergenic
TGGCAACCGATTTAGTAGGG+AGG 0.690164 4.4:-88767693 MS.gene034071:CDS
TTGTTGTTGGAACACCTGGG+AGG 0.722510 4.4:-88770425 MS.gene034071:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATTAAATGAATAT+GGG + chr4.4:88770597-88770616 None:intergenic 10.0%
!!! AAAACTAATAGATTTTTTTT+TGG - chr4.4:88772685-88772704 MS.gene034071:intron 10.0%
!!! ATATTCATTTAATTTTGTAT+GGG - chr4.4:88770597-88770616 MS.gene034071:intron 10.0%
!! AAAAAATTTGATTCCATAAA+AGG + chr4.4:88767045-88767064 None:intergenic 15.0%
!! AAATGCATTTAAACAAAATA+TGG + chr4.4:88770826-88770845 None:intergenic 15.0%
!! AAGCAAAAAAAAATCATATT+TGG + chr4.4:88770690-88770709 None:intergenic 15.0%
!! ACACATTTCATTAATAAATA+TGG - chr4.4:88767821-88767840 MS.gene034071:intron 15.0%
!! AGATTCTTTCTATTAATTTA+AGG - chr4.4:88772659-88772678 MS.gene034071:intron 15.0%
!! CATACAAAATTAAATGAATA+TGG + chr4.4:88770598-88770617 None:intergenic 15.0%
!! GATTCTTTCTATTAATTTAA+GGG - chr4.4:88772660-88772679 MS.gene034071:intron 15.0%
!! TAATAAATATGGTTTAAGTA+AGG - chr4.4:88767832-88767851 MS.gene034071:intron 15.0%
!! TACAAAATTAAATGAATATG+GGG + chr4.4:88770596-88770615 None:intergenic 15.0%
!! TACAAATTAAAACAGAAAAA+AGG + chr4.4:88770896-88770915 None:intergenic 15.0%
!! TATTATTATCATACTTCTAT+TGG + chr4.4:88767299-88767318 None:intergenic 15.0%
!!! AAAAAAAACTAACTTTTTGA+CGG + chr4.4:88767016-88767035 None:intergenic 15.0%
!!! AAATAAAAACTCAGTTATTT+TGG + chr4.4:88771086-88771105 None:intergenic 15.0%
!!! ATTGTTGACTTTAATTTTTA+TGG - chr4.4:88771884-88771903 MS.gene034071:CDS 15.0%
!!! CATATTCATTTAATTTTGTA+TGG - chr4.4:88770596-88770615 MS.gene034071:intron 15.0%
!!! TCTAAAATCATATTTATCAA+TGG + chr4.4:88772469-88772488 None:intergenic 15.0%
!!! TCTAGTTTAAATATAGTTTT+TGG - chr4.4:88772998-88773017 MS.gene034071:intron 15.0%
!!! TTTTTTTCTTTCAATTAATC+AGG - chr4.4:88769537-88769556 MS.gene034071:intron 15.0%
!!! TTTTTTTGGTGAAAAATTAA+GGG - chr4.4:88772699-88772718 MS.gene034071:intron 15.0%
!!! TTTTTTTTGGTGAAAAATTA+AGG - chr4.4:88772698-88772717 MS.gene034071:intron 15.0%
!! AAATCAATCTAACAATATAG+TGG + chr4.4:88768545-88768564 None:intergenic 20.0%
!! AGAAAGATATCAACAATAAT+AGG + chr4.4:88771242-88771261 None:intergenic 20.0%
!! AGTAAATCAAATTCTTGATA+TGG + chr4.4:88768368-88768387 None:intergenic 20.0%
!! AGTGTAAAATATATTGAGAA+CGG + chr4.4:88768933-88768952 None:intergenic 20.0%
!! ATAAGCATATAAAGATAGAA+AGG + chr4.4:88773073-88773092 None:intergenic 20.0%
!! ATCAATTTGTGTAATTGAAT+GGG - chr4.4:88767453-88767472 MS.gene034071:CDS 20.0%
!! ATGAGATTACATATAAACAA+GGG + chr4.4:88768867-88768886 None:intergenic 20.0%
!! ATTTGTAGTAATTAGTATAC+TGG - chr4.4:88767772-88767791 MS.gene034071:intron 20.0%
!! GAAAGATATCAACAATAATA+GGG + chr4.4:88771241-88771260 None:intergenic 20.0%
!! TATGAATACATCACAAAAAT+TGG - chr4.4:88769578-88769597 MS.gene034071:intron 20.0%
!! TGAAAATAAAGTTTAGCTAT+TGG + chr4.4:88773287-88773306 None:intergenic 20.0%
!! TGCTAAAAATATAGTAACAT+AGG + chr4.4:88771653-88771672 None:intergenic 20.0%
!! TTTAGCATTAAATATGGTTA+GGG - chr4.4:88768416-88768435 MS.gene034071:intron 20.0%
!! TTTGCAAATTAATACAAAGA+AGG + chr4.4:88771050-88771069 None:intergenic 20.0%
!!! AAAACCTAATATTACTTTTG+AGG + chr4.4:88768191-88768210 None:intergenic 20.0%
!!! AATAATGTCTCATGTTATTT+TGG - chr4.4:88770916-88770935 MS.gene034071:intron 20.0%
!!! AATAGCTAAACTTTATTTTC+AGG - chr4.4:88773286-88773305 MS.gene034071:intron 20.0%
!!! AATTTTTCAGTGATTTCTTA+AGG - chr4.4:88769269-88769288 MS.gene034071:intron 20.0%
!!! AGTCATTTTAGCATTAAATA+TGG - chr4.4:88768410-88768429 MS.gene034071:intron 20.0%
!!! ATTTGGTAGTCTAAAATATA+AGG + chr4.4:88770673-88770692 None:intergenic 20.0%
!!! TAATATTAGGTTTTCATTTG+AGG - chr4.4:88768197-88768216 MS.gene034071:intron 20.0%
!!! TATCAAGAATTTGATTTACT+TGG - chr4.4:88768368-88768387 MS.gene034071:intron 20.0%
!!! TATTTTGAGAGCATTTAATA+AGG - chr4.4:88770629-88770648 MS.gene034071:intron 20.0%
!!! TGTTACTATATTTTTAGCAT+TGG - chr4.4:88771654-88771673 MS.gene034071:intron 20.0%
!!! TTTGTTTAAATGCATTTTGT+TGG - chr4.4:88770829-88770848 MS.gene034071:CDS 20.0%
!!! TTTTAGCATTAAATATGGTT+AGG - chr4.4:88768415-88768434 MS.gene034071:intron 20.0%
!!! TTTTGACAAAAATAACAACT+TGG + chr4.4:88771372-88771391 None:intergenic 20.0%
!!! TTTTTTTCTTCTTCCTTTTA+TGG - chr4.4:88767029-88767048 MS.gene034071:intron 20.0%
! AAACTTTGAATGTTAGTTGT+CGG - chr4.4:88767624-88767643 MS.gene034071:CDS 25.0%
! AAATCATATTTATCAATGGC+AGG + chr4.4:88772465-88772484 None:intergenic 25.0%
! AATACATCACAAAAATTGGT+TGG - chr4.4:88769582-88769601 MS.gene034071:intron 25.0%
! AATCATAGTTATCAATGGTA+GGG + chr4.4:88772550-88772569 None:intergenic 25.0%
! AATCATATTTATCAATGGCA+GGG + chr4.4:88772464-88772483 None:intergenic 25.0%
! AATGCTATGATGCTTAAAAT+TGG + chr4.4:88768265-88768284 None:intergenic 25.0%
! ACATACATGTTAGTAATAGT+GGG + chr4.4:88768082-88768101 None:intergenic 25.0%
! ACTATCAATCCTACAAAATT+CGG + chr4.4:88771833-88771852 None:intergenic 25.0%
! AGATATAACTAAATCACCAA+AGG + chr4.4:88767730-88767749 None:intergenic 25.0%
! AGTTTCAAGATCTTGTAAAT+TGG - chr4.4:88772158-88772177 MS.gene034071:intron 25.0%
! ATCATCTACATAAATTTCCA+TGG + chr4.4:88771160-88771179 None:intergenic 25.0%
! ATGAGAATTTATAAGATGAG+AGG + chr4.4:88769147-88769166 None:intergenic 25.0%
! ATTATGCAAGATTATCTCTT+GGG - chr4.4:88771721-88771740 MS.gene034071:intron 25.0%
! CAATCTCTTACTTAATACTA+TGG + chr4.4:88771771-88771790 None:intergenic 25.0%
! CATGAGATTACATATAAACA+AGG + chr4.4:88768868-88768887 None:intergenic 25.0%
! CCTATAATCATAGTTATCAA+TGG + chr4.4:88772555-88772574 None:intergenic 25.0%
! GATCAATTTGTGTAATTGAA+TGG - chr4.4:88767452-88767471 MS.gene034071:CDS 25.0%
! GGTTAACTACTATTCTTAAT+AGG + chr4.4:88770525-88770544 None:intergenic 25.0%
! GTTTCAAGATCTTGTAAATT+GGG - chr4.4:88772159-88772178 MS.gene034071:intron 25.0%
! TAATCATAGTTATCAATGGT+AGG + chr4.4:88772551-88772570 None:intergenic 25.0%
! TACATCAAGAAAATTAAACG+AGG + chr4.4:88770546-88770565 None:intergenic 25.0%
! TATTATGCAAGATTATCTCT+TGG - chr4.4:88771720-88771739 MS.gene034071:intron 25.0%
! TCACCTCATTATAAAATTGT+TGG + chr4.4:88772270-88772289 None:intergenic 25.0%
! TCATCTACATAAATTTCCAT+GGG + chr4.4:88771159-88771178 None:intergenic 25.0%
! TGGTAAACCTTTACATTAAA+AGG - chr4.4:88769602-88769621 MS.gene034071:intron 25.0%
! TTATGAAAAGAGTGAAATTG+TGG - chr4.4:88767913-88767932 MS.gene034071:intron 25.0%
!! AAAACAGCAACTTTTATATC+TGG + chr4.4:88770058-88770077 None:intergenic 25.0%
!! AAATGAATATGGGGTAATTT+TGG + chr4.4:88770587-88770606 None:intergenic 25.0%
!! ATTTAATGTAGTGCTGAAAA+AGG + chr4.4:88771291-88771310 None:intergenic 25.0%
!! CCATTGATAACTATGATTAT+AGG - chr4.4:88772552-88772571 MS.gene034071:intron 25.0%
!! GATCCAACAATTTTATAATG+AGG - chr4.4:88772264-88772283 MS.gene034071:intron 25.0%
!! TGCACGAATAATCAATATTT+TGG + chr4.4:88771697-88771716 None:intergenic 25.0%
!! TTGTAGGATTGATAGTAAAA+TGG - chr4.4:88771837-88771856 MS.gene034071:CDS 25.0%
!!! AAAAAGTATCTTACTGTATG+TGG + chr4.4:88773366-88773385 None:intergenic 25.0%
!!! AGAGATTGCGTTTTTTATAT+TGG - chr4.4:88771783-88771802 MS.gene034071:intron 25.0%
!!! AGTAATTAGTATACTGGTTT+TGG - chr4.4:88767778-88767797 MS.gene034071:intron 25.0%
!!! ATAAAAGTTGCTGTTTTCTA+TGG - chr4.4:88770061-88770080 MS.gene034071:intron 25.0%
!!! GCTTTATAAAGGTTTTATCT+TGG - chr4.4:88773604-88773623 MS.gene034071:CDS 25.0%
!!! TACTTTTTCGTAGTAGTTTA+TGG - chr4.4:88773378-88773397 MS.gene034071:intron 25.0%
!!! TTGGTTAATAAAAGCATCAA+TGG + chr4.4:88773268-88773287 None:intergenic 25.0%
!!! TTTTTAACTGTTGCTGATTT+GGG - chr4.4:88767703-88767722 MS.gene034071:CDS 25.0%
!!! TTTTTTAACTGTTGCTGATT+TGG - chr4.4:88767702-88767721 MS.gene034071:CDS 25.0%
AACAAAGAAAATACAGTGTG+AGG + chr4.4:88768629-88768648 None:intergenic 30.0%
AACTTTGAATGTTAGTTGTC+GGG - chr4.4:88767625-88767644 MS.gene034071:CDS 30.0%
AAGTCTATTAACTCTACCAA+GGG - chr4.4:88769064-88769083 MS.gene034071:intron 30.0%
ACAAAGATAGATGAGAACTA+AGG + chr4.4:88769447-88769466 None:intergenic 30.0%
ACAAGTGTGATGCTTTATAA+AGG - chr4.4:88773593-88773612 MS.gene034071:CDS 30.0%
ACATCATCACTTGTTTATCA+TGG + chr4.4:88770392-88770411 None:intergenic 30.0%
ACCTTTACATTAAAAGGATC+TGG - chr4.4:88769608-88769627 MS.gene034071:intron 30.0%
AGAAGCAAAGAAAATTGTAG+TGG + chr4.4:88769663-88769682 None:intergenic 30.0%
ATCACTGAAAAATTTATCCG+AGG + chr4.4:88769263-88769282 None:intergenic 30.0%
ATCATAGTTATCAATGGTAG+GGG + chr4.4:88772549-88772568 None:intergenic 30.0%
ATCATCACTTGTTTATCATG+GGG + chr4.4:88770390-88770409 None:intergenic 30.0%
ATTCAAAACACCTCACAAAT+AGG + chr4.4:88770866-88770885 None:intergenic 30.0%
ATTCATTGAGAAAAGTTACC+AGG - chr4.4:88772516-88772535 MS.gene034071:intron 30.0%
CAGAATGTATGCAAATTGAT+GGG + chr4.4:88771444-88771463 None:intergenic 30.0%
CAGATCATATATACTTACTG+AGG - chr4.4:88769631-88769650 MS.gene034071:intron 30.0%
CAGCATATAAAACATATACC+CGG + chr4.4:88771597-88771616 None:intergenic 30.0%
CATCATCACTTGTTTATCAT+GGG + chr4.4:88770391-88770410 None:intergenic 30.0%
CTAGTGACATTCAACAAAAA+TGG + chr4.4:88770955-88770974 None:intergenic 30.0%
GACATACATGTTAGTAATAG+TGG + chr4.4:88768083-88768102 None:intergenic 30.0%
GACTATACTGAATCATGTAA+TGG + chr4.4:88768779-88768798 None:intergenic 30.0%
GGAAATTTATGTAGATGATG+AGG - chr4.4:88771161-88771180 MS.gene034071:intron 30.0%
TAATGTGATGCGAAAATAAC+AGG + chr4.4:88770800-88770819 None:intergenic 30.0%
TACGTCAGACTTTAGTAAAT+TGG - chr4.4:88767593-88767612 MS.gene034071:intron 30.0%
TACTAACATGTATGTCTGAA+TGG - chr4.4:88768087-88768106 MS.gene034071:intron 30.0%
TATAAAGATAGAAAGGACAG+AGG + chr4.4:88773066-88773085 None:intergenic 30.0%
TCAAATTCTTGATATGGACT+AGG + chr4.4:88768362-88768381 None:intergenic 30.0%
TCACTGAAAAATTTATCCGA+GGG + chr4.4:88769262-88769281 None:intergenic 30.0%
TCAGTCTTAATAAACCAAGA+TGG - chr4.4:88772322-88772341 MS.gene034071:intron 30.0%
TGCACAAAGTTTATTAGAAC+TGG - chr4.4:88773420-88773439 MS.gene034071:intron 30.0%
TGCACCTCAAAAGTAATATT+AGG - chr4.4:88768184-88768203 MS.gene034071:intron 30.0%
TGGTGACCTTCAATTATAAT+GGG - chr4.4:88772077-88772096 MS.gene034071:intron 30.0%
TTAAGCATCATAGCATTAAC+TGG - chr4.4:88768268-88768287 MS.gene034071:intron 30.0%
TTACAAGATCTTGAAACTTC+TGG + chr4.4:88772156-88772175 None:intergenic 30.0%
TTGATGCAATCAATGTTAAC+TGG - chr4.4:88767330-88767349 MS.gene034071:intron 30.0%
TTGTGTAATTGAATGGGATA+AGG - chr4.4:88767459-88767478 MS.gene034071:intron 30.0%
! AAATGGACTTATGTCTGATT+AGG - chr4.4:88771854-88771873 MS.gene034071:CDS 30.0%
! AGTTCTTAATCAGGTTAGTT+AGG - chr4.4:88773182-88773201 MS.gene034071:intron 30.0%
! ATACGTTTGTGATAGTGTAT+TGG + chr4.4:88769957-88769976 None:intergenic 30.0%
! ATGTTAGTAATAGTGGGATA+AGG + chr4.4:88768076-88768095 None:intergenic 30.0%
! TACTGAACTTTATTTGTACG+AGG + chr4.4:88772743-88772762 None:intergenic 30.0%
! TAGTTATCAATTGTGGATTG+TGG - chr4.4:88772230-88772249 MS.gene034071:intron 30.0%
! TCAATGCTTTAAGCTGATTT+AGG - chr4.4:88771535-88771554 MS.gene034071:intron 30.0%
! TCATTTTCATTGAAACTGGA+GGG - chr4.4:88773224-88773243 MS.gene034071:intron 30.0%
! TCTCTCATTTTCATTGAAAC+TGG - chr4.4:88773220-88773239 MS.gene034071:intron 30.0%
! TGATAGTGTATTGGAAACAA+AGG + chr4.4:88769948-88769967 None:intergenic 30.0%
! TTAATAAGGCGAAGTTGATT+AGG - chr4.4:88770643-88770662 MS.gene034071:intron 30.0%
!! CTAACAATATAGTGGATAGT+TGG + chr4.4:88768537-88768556 None:intergenic 30.0%
!! TAGGTTTGAGGTTGATATAA+AGG - chr4.4:88773316-88773335 MS.gene034071:intron 30.0%
!! TGTATTTTCTTTGTTGTGCA+GGG - chr4.4:88768634-88768653 MS.gene034071:intron 30.0%
!! TTAATAGACTTGGTGTTATG+TGG + chr4.4:88769055-88769074 None:intergenic 30.0%
!!! ATAGTTTTTGGCTTGTAGTA+TGG - chr4.4:88773010-88773029 MS.gene034071:intron 30.0%
!!! TGAATTTTTTGCAAACAGGT+CGG + chr4.4:88770440-88770459 None:intergenic 30.0%
!!! TGCATGAATTTTTTGCAAAC+AGG + chr4.4:88770444-88770463 None:intergenic 30.0%
!!! TTTATTTTCAGGTGCAATCT+AGG - chr4.4:88773297-88773316 MS.gene034071:intron 30.0%
AAAGTCTGACGTAAGTTGTA+CGG + chr4.4:88767586-88767605 None:intergenic 35.0%
AAGACCATGAAGAGTCAATT+TGG + chr4.4:88771187-88771206 None:intergenic 35.0%
AAGTATCTTACTGTATGTGG+AGG + chr4.4:88773363-88773382 None:intergenic 35.0%
AGACAATGCCTGTTATCAAA+AGG + chr4.4:88769225-88769244 None:intergenic 35.0%
AGGAAGAGAAACTCAAAAAG+TGG + chr4.4:88768609-88768628 None:intergenic 35.0%
AGTAGACGACATCAATACAA+TGG + chr4.4:88768902-88768921 None:intergenic 35.0%
ATACCTAAACATATCCAGTC+CGG + chr4.4:88772107-88772126 None:intergenic 35.0%
ATCCATTTCCTGTTTGAAGA+GGG - chr4.4:88772192-88772211 MS.gene034071:intron 35.0%
ATGCTGGATGTCTGTTAAAT+AGG - chr4.4:88771611-88771630 MS.gene034071:intron 35.0%
CAAAACAGCTCTTGCATATA+TGG + chr4.4:88770754-88770773 None:intergenic 35.0%
CAAAACATGTGTTTGGTCAT+AGG + chr4.4:88769410-88769429 None:intergenic 35.0%
CAAGCAACAAAACATGTGTT+TGG + chr4.4:88769417-88769436 None:intergenic 35.0%
CAAGTCTATTAACTCTACCA+AGG - chr4.4:88769063-88769082 MS.gene034071:intron 35.0%
CCAGAATGTATGCAAATTGA+TGG + chr4.4:88771445-88771464 None:intergenic 35.0%
CCATCAATTTGCATACATTC+TGG - chr4.4:88771442-88771461 MS.gene034071:intron 35.0%
CTAGGCATAGTTATCAATTG+TGG - chr4.4:88772223-88772242 MS.gene034071:intron 35.0%
CTTGGTAGAGTTAATAGACT+TGG + chr4.4:88769065-88769084 None:intergenic 35.0%
GAAAGATACTGAAGTTTACG+AGG - chr4.4:88766924-88766943 MS.gene034071:intron 35.0%
GACAAATTGCTGATGAGATT+AGG + chr4.4:88772010-88772029 None:intergenic 35.0%
GATGTCTGTTAAATAGGACA+TGG - chr4.4:88771617-88771636 MS.gene034071:intron 35.0%
GGTGAATGACAACAACAAAT+AGG + chr4.4:88768336-88768355 None:intergenic 35.0%
GGTGACCTTCAATTATAATG+GGG - chr4.4:88772078-88772097 MS.gene034071:intron 35.0%
GTCCATTCCTAAAATTGCTT+GGG + chr4.4:88769711-88769730 None:intergenic 35.0%
GTGACCTTCAATTATAATGG+GGG - chr4.4:88772079-88772098 MS.gene034071:intron 35.0%
GTGGTGACCTTCAATTATAA+TGG - chr4.4:88772076-88772095 MS.gene034071:intron 35.0%
TAAAGTTTCGTGCTTGAAAG+TGG - chr4.4:88767148-88767167 MS.gene034071:intron 35.0%
TAACTTACAGGAAAGGGATT+GGG + chr4.4:88771925-88771944 None:intergenic 35.0%
TAGTAAAACTTGCCTTCTGA+AGG + chr4.4:88768749-88768768 None:intergenic 35.0%
TATAGTTAGGTATACTGCGA+AGG + chr4.4:88768042-88768061 None:intergenic 35.0%
TATCCATTTCCTGTTTGAAG+AGG - chr4.4:88772191-88772210 MS.gene034071:intron 35.0%
TCATTTGCCAAGCAAAATCT+GGG - chr4.4:88769732-88769751 MS.gene034071:intron 35.0%
TCCATTCCTAAAATTGCTTG+GGG + chr4.4:88769710-88769729 None:intergenic 35.0%
TCCTTATGATTGAGACAGTT+GGG + chr4.4:88770484-88770503 None:intergenic 35.0%
TCGCGTAAATAAACAGCTAA+AGG + chr4.4:88768135-88768154 None:intergenic 35.0%
TCTGTTAAATAGGACATGGT+TGG - chr4.4:88771621-88771640 MS.gene034071:intron 35.0%
TGGCTGGTAACTATTCTAAA+TGG + chr4.4:88772435-88772454 None:intergenic 35.0%
TTAACTTACAGGAAAGGGAT+TGG + chr4.4:88771926-88771945 None:intergenic 35.0%
TTCAGATTGAAGCGATACAA+GGG - chr4.4:88772817-88772836 MS.gene034071:intron 35.0%
TTCCTTATGATTGAGACAGT+TGG + chr4.4:88770485-88770504 None:intergenic 35.0%
TTTCAGATTGAAGCGATACA+AGG - chr4.4:88772816-88772835 MS.gene034071:intron 35.0%
! AAAGCATCAATGGCCAAAAA+GGG + chr4.4:88773258-88773277 None:intergenic 35.0%
! AAGGGCATGCTAAAAAGAAA+AGG + chr4.4:88768849-88768868 None:intergenic 35.0%
! AGTGTTTATGTGGCAGTTTT+TGG - chr4.4:88770727-88770746 MS.gene034071:CDS 35.0%
! ATCTTGTGCTTTAAGTAGGT+TGG - chr4.4:88771983-88772002 MS.gene034071:intron 35.0%
! ATCTTTTCTCATGTCTGCAA+AGG + chr4.4:88770343-88770362 None:intergenic 35.0%
! ATTTCTCTGCCGAATTTTGT+AGG - chr4.4:88771821-88771840 MS.gene034071:intron 35.0%
! CATGATCTTGTGCTTTAAGT+AGG - chr4.4:88771979-88771998 MS.gene034071:intron 35.0%
! CATTTTCATTGAAACTGGAG+GGG - chr4.4:88773225-88773244 MS.gene034071:intron 35.0%
! CGGGTATATGTTTTATATGC+TGG - chr4.4:88771595-88771614 MS.gene034071:intron 35.0%
! CTACAGACTTCTTGTGTTTT+GGG - chr4.4:88768808-88768827 MS.gene034071:intron 35.0%
! CTCATTTTCATTGAAACTGG+AGG - chr4.4:88773223-88773242 MS.gene034071:intron 35.0%
! GCCAGATCCTTTTAATGTAA+AGG + chr4.4:88769612-88769631 None:intergenic 35.0%
! GTACTCTAGAAGACAGAATA+GGG + chr4.4:88769203-88769222 None:intergenic 35.0%
! TCTACAGACTTCTTGTGTTT+TGG - chr4.4:88768807-88768826 MS.gene034071:intron 35.0%
! TGACCTTCAATTATAATGGG+GGG - chr4.4:88772080-88772099 MS.gene034071:intron 35.0%
! TTTACTTGGTCTTTGTTCCT+CGG - chr4.4:88768382-88768401 MS.gene034071:intron 35.0%
!! AAAAGCATCAATGGCCAAAA+AGG + chr4.4:88773259-88773278 None:intergenic 35.0%
!! ATGTTAACTGGTTCTGTCTA+AGG - chr4.4:88767342-88767361 MS.gene034071:intron 35.0%
!! ATTACTTTTGTGTCTTCTGC+TGG - chr4.4:88773150-88773169 MS.gene034071:intron 35.0%
!! CTAGAGTACCTTTTGATAAC+AGG - chr4.4:88769214-88769233 MS.gene034071:CDS 35.0%
!! CTGTATTTTCTTTGTTGTGC+AGG - chr4.4:88768633-88768652 MS.gene034071:intron 35.0%
!! GTATTTTCTTTGTTGTGCAG+GGG - chr4.4:88768635-88768654 MS.gene034071:intron 35.0%
!! TGACTCTGAAGTTCTTAATC+AGG - chr4.4:88773173-88773192 MS.gene034071:intron 35.0%
!! TGTTAACTGGTTCTGTCTAA+GGG - chr4.4:88767343-88767362 MS.gene034071:intron 35.0%
!! TTCTTGATATGGACTAGGAA+AGG + chr4.4:88768357-88768376 None:intergenic 35.0%
!!! AAAGTTGCTGTTTTCTATGG+TGG - chr4.4:88770064-88770083 MS.gene034071:intron 35.0%
!!! CGTTCTAAGATGTTTTGTTC+CGG - chr4.4:88771575-88771594 MS.gene034071:intron 35.0%
!!! GTTCTAAGATGTTTTGTTCC+GGG - chr4.4:88771576-88771595 MS.gene034071:intron 35.0%
!!! TGCATTTCGTTGATTTTGTG+TGG - chr4.4:88770993-88771012 MS.gene034071:intron 35.0%
!!! TGCATTTTGTTGGTTTTGTG+CGG - chr4.4:88770839-88770858 MS.gene034071:CDS 35.0%
!!! TTACTTTTGAGGTGCAAATC+AGG + chr4.4:88768180-88768199 None:intergenic 35.0%
!!! TTTTTGACGGATTCAGTAGT+GGG + chr4.4:88767003-88767022 None:intergenic 35.0%
AAAAGTAATTGCAAGCCCCT+TGG + chr4.4:88773139-88773158 None:intergenic 40.0%
AAAATTGGAGAGCAGTGAGA+CGG + chr4.4:88768250-88768269 None:intergenic 40.0%
AAACAACACCCTCTTCAAAC+AGG + chr4.4:88772203-88772222 None:intergenic 40.0%
AAGGCTGTCTCTTGCTTATT+TGG - chr4.4:88769288-88769307 MS.gene034071:intron 40.0%
AAGGTCCTTATCTCTAGTCA+GGG + chr4.4:88770170-88770189 None:intergenic 40.0%
AATGGGATAAGGCTTGATTG+TGG - chr4.4:88767470-88767489 MS.gene034071:intron 40.0%
ACCTTATGTAGTACAGCCAA+AGG + chr4.4:88767947-88767966 None:intergenic 40.0%
ACTACATAAGGTCGCTCTTA+TGG - chr4.4:88767955-88767974 MS.gene034071:intron 40.0%
AGAGTGAAATTGTGGTAGAG+TGG - chr4.4:88767921-88767940 MS.gene034071:intron 40.0%
AGATAGGTATCAGCAGAATC+AGG + chr4.4:88772940-88772959 None:intergenic 40.0%
AGGCTGTCTCTTGCTTATTT+GGG - chr4.4:88769289-88769308 MS.gene034071:intron 40.0%
AGGTTGAGCTTTCTGTGAAT+GGG + chr4.4:88768316-88768335 None:intergenic 40.0%
AGTACATAAGACTACGCATG+TGG + chr4.4:88771514-88771533 None:intergenic 40.0%
ATGCTTATCGTCATCTGAAC+TGG - chr4.4:88773085-88773104 MS.gene034071:intron 40.0%
ATTTATCAATGGCAGGGTAG+CGG + chr4.4:88772458-88772477 None:intergenic 40.0%
CAGGAGTTGGAACAATAAGA+AGG + chr4.4:88770781-88770800 None:intergenic 40.0%
CCATTCCTAAAATTGCTTGG+GGG + chr4.4:88769709-88769728 None:intergenic 40.0%
CGTCCATTCCTAAAATTGCT+TGG + chr4.4:88769712-88769731 None:intergenic 40.0%
CTACATAAATTTCCATGGGC+TGG + chr4.4:88771155-88771174 None:intergenic 40.0%
CTCAAACCCTGAATCTACAA+TGG + chr4.4:88768723-88768742 None:intergenic 40.0%
CTGAAACAGACATGTAGTCA+TGG + chr4.4:88772802-88772821 None:intergenic 40.0%
CTGGAATGTCACAAGAAGAA+AGG - chr4.4:88771461-88771480 MS.gene034071:intron 40.0%
CTTATGGACACAGACAATCA+TGG - chr4.4:88767971-88767990 MS.gene034071:intron 40.0%
GATGCGAAAATAACAGGAGT+TGG + chr4.4:88770794-88770813 None:intergenic 40.0%
GCTAAAATGACTATAGACCG+AGG + chr4.4:88768402-88768421 None:intergenic 40.0%
GGAGGTTAACTTACAGGAAA+GGG + chr4.4:88771931-88771950 None:intergenic 40.0%
GGCACTGCAGTAAAAACAAA+AGG + chr4.4:88773645-88773664 None:intergenic 40.0%
GTAAGAGTTAAGAAAGCCCT+TGG + chr4.4:88769083-88769102 None:intergenic 40.0%
GTCATTTGCCAAGCAAAATC+TGG - chr4.4:88769731-88769750 MS.gene034071:intron 40.0%
GTGTTCCAACAACAATGTGT+GGG + chr4.4:88770132-88770151 None:intergenic 40.0%
GTTGTCGGGTCTTTATCTAT+TGG - chr4.4:88767639-88767658 MS.gene034071:CDS 40.0%
TAGCCAGTGTGAGATTGTAA+TGG + chr4.4:88767997-88768016 None:intergenic 40.0%
TATCTATTGGCGGCTATTTG+CGG - chr4.4:88767652-88767671 MS.gene034071:CDS 40.0%
TCATGTCTGCAAAGGTCAAA+TGG + chr4.4:88770335-88770354 None:intergenic 40.0%
TCCCAACTGTCTCAATCATA+AGG - chr4.4:88770480-88770499 MS.gene034071:CDS 40.0%
TGATGAATGTGACAAGATGC+TGG - chr4.4:88770219-88770238 MS.gene034071:intron 40.0%
TGCTGATACCTATCTTCACA+GGG - chr4.4:88772945-88772964 MS.gene034071:intron 40.0%
TTATCGTCATCTGAACTGGT+AGG - chr4.4:88773089-88773108 MS.gene034071:intron 40.0%
TTCAGCTTACGATTCTTCTC+TGG + chr4.4:88771322-88771341 None:intergenic 40.0%
TTGACTACTTCCAGCTTAGA+AGG - chr4.4:88772049-88772068 MS.gene034071:intron 40.0%
TTTGCTTGTCAGATCTGAAG+TGG + chr4.4:88772388-88772407 None:intergenic 40.0%
! AAGGACAGAGGTCTTTTACA+AGG + chr4.4:88773054-88773073 None:intergenic 40.0%
! ACATTGTTGTTGGAACACCT+GGG - chr4.4:88770134-88770153 MS.gene034071:CDS 40.0%
! ACCTTGGTTTGAAGAATGTG+AGG - chr4.4:88770185-88770204 MS.gene034071:CDS 40.0%
! AGAGTAGATGTTGATTGACC+TGG - chr4.4:88767366-88767385 MS.gene034071:intron 40.0%
! AGGCACAGTGTGATAATGAA+TGG - chr4.4:88767852-88767871 MS.gene034071:intron 40.0%
! AGTAATAGTGGGATAAGGCT+TGG + chr4.4:88768071-88768090 None:intergenic 40.0%
! CACAAGAGAACTAGCTTATC+AGG - chr4.4:88769841-88769860 MS.gene034071:intron 40.0%
! GATAAGCTAGTTCTCTTGTG+TGG + chr4.4:88769841-88769860 None:intergenic 40.0%
! GATGTTGATTGACCTGGATT+TGG - chr4.4:88767372-88767391 MS.gene034071:intron 40.0%
! GGCTTGGTTGTTGTATAGTT+AGG + chr4.4:88768055-88768074 None:intergenic 40.0%
! GGTACTCTAGAAGACAGAAT+AGG + chr4.4:88769204-88769223 None:intergenic 40.0%
! TAGGTTGAGCTTTCTGTGAA+TGG + chr4.4:88768317-88768336 None:intergenic 40.0%
! TTCAATTATAATGGGGGGAC+CGG - chr4.4:88772085-88772104 MS.gene034071:intron 40.0%
! TTCCAGCTTAGAAGGTATAG+TGG - chr4.4:88772057-88772076 MS.gene034071:intron 40.0%
! TTGCTTGTCAGATCTGAAGT+GGG + chr4.4:88772387-88772406 None:intergenic 40.0%
!! TTGAAGAGGGTGTTGTTTCT+AGG - chr4.4:88772205-88772224 MS.gene034071:intron 40.0%
!!! CTTTTTGACGGATTCAGTAG+TGG + chr4.4:88767004-88767023 None:intergenic 40.0%
!!! TTTTTGAGTGCACCAAATCC+AGG + chr4.4:88767387-88767406 None:intergenic 40.0%
AACGCGCAATTAAGGAGACA+AGG + chr4.4:88770268-88770287 None:intergenic 45.0%
AATCCCCCTCCCTACTAAAT+CGG + chr4.4:88772878-88772897 None:intergenic 45.0%
AATGGCTTGAAAGCAGGAAG+TGG - chr4.4:88768105-88768124 MS.gene034071:intron 45.0%
AATTGATCCTGTTCCTGGTC+AGG - chr4.4:88769796-88769815 MS.gene034071:intron 45.0%
AATTGTGGTAGAGTGGCCTT+TGG - chr4.4:88767928-88767947 MS.gene034071:intron 45.0%
ACCCTGAATCTACAATGGCT+CGG + chr4.4:88768718-88768737 None:intergenic 45.0%
ACTATGCAAACATGCACAGG+AGG + chr4.4:88771953-88771972 None:intergenic 45.0%
AGACCAGCGTAGTGTTTATG+TGG - chr4.4:88770717-88770736 MS.gene034071:intron 45.0%
AGATTTGCCACGAAGTTGAG+AGG - chr4.4:88770017-88770036 MS.gene034071:intron 45.0%
AGCACTTACCCTGTGAAGAT+AGG + chr4.4:88772956-88772975 None:intergenic 45.0%
AGCAGTGAGACGGAAATGAA+TGG + chr4.4:88768240-88768259 None:intergenic 45.0%
AGTCTCGAAATCCCGAACTA+TGG + chr4.4:88768673-88768692 None:intergenic 45.0%
AGTTAGGTATACTGCGAAGG+TGG + chr4.4:88768039-88768058 None:intergenic 45.0%
AGTTATCAATGGTAGGGGAG+TGG + chr4.4:88772544-88772563 None:intergenic 45.0%
ATAGACACACACTCACTCAC+AGG + chr4.4:88768457-88768476 None:intergenic 45.0%
ATCCGAGGGAACTTGACTAT+TGG + chr4.4:88769248-88769267 None:intergenic 45.0%
CAAGGTCCTTATCTCTAGTC+AGG + chr4.4:88770171-88770190 None:intergenic 45.0%
CACCACTATACCTTCTAAGC+TGG + chr4.4:88772062-88772081 None:intergenic 45.0%
CACCCTCTTCAAACAGGAAA+TGG + chr4.4:88772197-88772216 None:intergenic 45.0%
CAGCAAATTGATCCTGTTCC+TGG - chr4.4:88769791-88769810 MS.gene034071:intron 45.0%
CATTGAAACTGGAGGGGAAT+AGG - chr4.4:88773231-88773250 MS.gene034071:intron 45.0%
CGATACAAGGGCTTCAAAGA+GGG - chr4.4:88772829-88772848 MS.gene034071:intron 45.0%
CTACGTTGGGATCCATAGTT+CGG - chr4.4:88768658-88768677 MS.gene034071:intron 45.0%
CTATGCAAACATGCACAGGA+GGG + chr4.4:88771952-88771971 None:intergenic 45.0%
CTCCAATAGTCAAGTTCCCT+CGG - chr4.4:88769243-88769262 MS.gene034071:CDS 45.0%
CTCGACAAAACGCGCAATTA+AGG + chr4.4:88770276-88770295 None:intergenic 45.0%
CTGACTAGAGATAAGGACCT+TGG - chr4.4:88770169-88770188 MS.gene034071:CDS 45.0%
CTGCTGATACCTATCTTCAC+AGG - chr4.4:88772944-88772963 MS.gene034071:intron 45.0%
CTGTCTCTTGCTTATTTGGG+GGG - chr4.4:88769292-88769311 MS.gene034071:intron 45.0%
GAAGACAGAATAGGGAGCTA+AGG + chr4.4:88769195-88769214 None:intergenic 45.0%
GACAAGATGCTGGAATCACT+TGG - chr4.4:88770229-88770248 MS.gene034071:intron 45.0%
GATACAAGGGCTTCAAAGAG+GGG - chr4.4:88772830-88772849 MS.gene034071:intron 45.0%
GCCTCACATTCTTCAAACCA+AGG + chr4.4:88770189-88770208 None:intergenic 45.0%
GCCTTTGGCTGTACTACATA+AGG - chr4.4:88767943-88767962 MS.gene034071:intron 45.0%
GCTGTCTCTTGCTTATTTGG+GGG - chr4.4:88769291-88769310 MS.gene034071:intron 45.0%
GGCTGTCTCTTGCTTATTTG+GGG - chr4.4:88769290-88769309 MS.gene034071:intron 45.0%
GGGAGGTTAACTTACAGGAA+AGG + chr4.4:88771932-88771951 None:intergenic 45.0%
GGTCCCCCCATTATAATTGA+AGG + chr4.4:88772086-88772105 None:intergenic 45.0%
GGTGTTCCAACAACAATGTG+TGG + chr4.4:88770133-88770152 None:intergenic 45.0%
GGTTGAGCTTTCTGTGAATG+GGG + chr4.4:88768315-88768334 None:intergenic 45.0%
GTCGGGTCTTTATCTATTGG+CGG - chr4.4:88767642-88767661 MS.gene034071:CDS 45.0%
GTTAGGTATACTGCGAAGGT+GGG + chr4.4:88768038-88768057 None:intergenic 45.0%
TACGTTGGGATCCATAGTTC+GGG - chr4.4:88768659-88768678 MS.gene034071:intron 45.0%
TCAGGTGCAATCTAGGTTTG+AGG - chr4.4:88773304-88773323 MS.gene034071:intron 45.0%
TCCGAGCCATTGTAGATTCA+GGG - chr4.4:88768714-88768733 MS.gene034071:intron 45.0%
TCCTGTGCATGTTTGCATAG+TGG - chr4.4:88771952-88771971 MS.gene034071:intron 45.0%
TCTCAACTTCGTGGCAAATC+TGG + chr4.4:88770018-88770037 None:intergenic 45.0%
TCTTGCCCTGACTAGAGATA+AGG - chr4.4:88770162-88770181 MS.gene034071:CDS 45.0%
TGAGCCAGTAATCCGACATA+TGG - chr4.4:88772350-88772369 MS.gene034071:intron 45.0%
TGGAGTCTAACTAGTTGCTC+TGG + chr4.4:88772415-88772434 None:intergenic 45.0%
TGGCCATTACAATCTCACAC+TGG - chr4.4:88767991-88768010 MS.gene034071:intron 45.0%
TGTCTGAATGGCTTGAAAGC+AGG - chr4.4:88768099-88768118 MS.gene034071:intron 45.0%
TTGCCAAGCAAAATCTGGGA+TGG - chr4.4:88769736-88769755 MS.gene034071:intron 45.0%
TTTGTGCGGTCCTATTTGTG+AGG - chr4.4:88770853-88770872 MS.gene034071:CDS 45.0%
! CACATTGTTGTTGGAACACC+TGG - chr4.4:88770133-88770152 MS.gene034071:CDS 45.0%
! CTATGGTGGTGTCAACATCA+AGG - chr4.4:88770078-88770097 MS.gene034071:intron 45.0%
! GACAGAGGTCTTTTACAAGG+AGG + chr4.4:88773051-88773070 None:intergenic 45.0%
! GAGGCCAAATTGACTCTTCA+TGG - chr4.4:88771180-88771199 MS.gene034071:intron 45.0%
! GTTTTCAGCTACACTCAGCA+AGG - chr4.4:88770410-88770429 MS.gene034071:CDS 45.0%
! TCGTGGCAACCGATTTAGTA+GGG - chr4.4:88772866-88772885 MS.gene034071:intron 45.0%
! TGCATCCCCCAAGCAATTTT+AGG - chr4.4:88769701-88769720 MS.gene034071:intron 45.0%
! TGCCAAGCAAAATCTGGGAT+GGG - chr4.4:88769737-88769756 MS.gene034071:intron 45.0%
! TGCTTGTCAGATCTGAAGTG+GGG + chr4.4:88772386-88772405 None:intergenic 45.0%
! TTCCCATCCCAGATTTTGCT+TGG + chr4.4:88769742-88769761 None:intergenic 45.0%
!! CATAAATTTCCATGGGCTGG+AGG + chr4.4:88771152-88771171 None:intergenic 45.0%
!! CCCCCAAGCAATTTTAGGAA+TGG - chr4.4:88769706-88769725 MS.gene034071:intron 45.0%
!! GTGGAGGTGTCAATTTGTTC+AGG + chr4.4:88773347-88773366 None:intergenic 45.0%
!! TGTTGCTGATTTGGGTCCTT+TGG - chr4.4:88767711-88767730 MS.gene034071:CDS 45.0%
AGCTGGTAGATTTGGCACCA+AGG - chr4.4:88773119-88773138 MS.gene034071:intron 50.0%
CAGGAGGGAGGTTAACTTAC+AGG + chr4.4:88771937-88771956 None:intergenic 50.0%
CAGGCCATATGTCGGATTAC+TGG + chr4.4:88772357-88772376 None:intergenic 50.0%
CGTCATCTGAACTGGTAGGT+CGG - chr4.4:88773093-88773112 MS.gene034071:intron 50.0%
CTCCGAGCCATTGTAGATTC+AGG - chr4.4:88768713-88768732 MS.gene034071:intron 50.0%
CTGCCACATAAACACTACGC+TGG + chr4.4:88770723-88770742 None:intergenic 50.0%
CTGGTAGATTTGGCACCAAG+GGG - chr4.4:88773121-88773140 MS.gene034071:intron 50.0%
GAGTGCCCACACATTGTTGT+TGG - chr4.4:88770124-88770143 MS.gene034071:CDS 50.0%
GCCACTATGCAAACATGCAC+AGG + chr4.4:88771956-88771975 None:intergenic 50.0%
GCGATACAAGGGCTTCAAAG+AGG - chr4.4:88772828-88772847 MS.gene034071:intron 50.0%
GCGCAATTAAGGAGACAAGG+AGG + chr4.4:88770265-88770284 None:intergenic 50.0%
GCTGGTAGATTTGGCACCAA+GGG - chr4.4:88773120-88773139 MS.gene034071:intron 50.0%
GGGTTTGAGCATCCTTCAGA+AGG - chr4.4:88768734-88768753 MS.gene034071:intron 50.0%
GGTTGTTGTCGTCGAGTCAT+TGG - chr4.4:88767553-88767572 MS.gene034071:intron 50.0%
GTCGGTAGAGCTGGTAGATT+TGG - chr4.4:88773111-88773130 MS.gene034071:intron 50.0%
TCTCTTGCTTATTTGGGGGG+TGG - chr4.4:88769295-88769314 MS.gene034071:intron 50.0%
TGCTGAACCTCTCAACTTCG+TGG + chr4.4:88770027-88770046 None:intergenic 50.0%
! ACTCTTTTTCCTCCAGCCCA+TGG - chr4.4:88771140-88771159 MS.gene034071:intron 50.0%
! ACTGGCTCAACTAGCCATCT+TGG + chr4.4:88772339-88772358 None:intergenic 50.0%
! CAACCGATTTAGTAGGGAGG+GGG - chr4.4:88772872-88772891 MS.gene034071:intron 50.0%
! CTCGTGGCAACCGATTTAGT+AGG - chr4.4:88772865-88772884 MS.gene034071:intron 50.0%
! GAGGGGAATAGGACCCTTTT+TGG - chr4.4:88773242-88773261 MS.gene034071:intron 50.0%
! GCAACCGATTTAGTAGGGAG+GGG - chr4.4:88772871-88772890 MS.gene034071:intron 50.0%
! GGACCGGACTGGATATGTTT+AGG - chr4.4:88772101-88772120 MS.gene034071:intron 50.0%
! GGAGAAGCTCTGGTTTCAAC+AGG + chr4.4:88768697-88768716 None:intergenic 50.0%
! GGCAACCGATTTAGTAGGGA+GGG - chr4.4:88772870-88772889 MS.gene034071:intron 50.0%
! GTGGATTGTGGCACAGTAAC+TGG - chr4.4:88772242-88772261 MS.gene034071:intron 50.0%
! TGGCAACCGATTTAGTAGGG+AGG - chr4.4:88772869-88772888 MS.gene034071:intron 50.0%
! TTGTTGTTGGAACACCTGGG+AGG - chr4.4:88770137-88770156 MS.gene034071:CDS 50.0%
AACTGGTAGGTCGGTAGAGC+TGG - chr4.4:88773102-88773121 MS.gene034071:intron 55.0%
GGCTTGGACAGGCCATATGT+CGG + chr4.4:88772365-88772384 None:intergenic 55.0%
GGGGAAGCAGAGAATTCTCG+TGG - chr4.4:88772849-88772868 MS.gene034071:intron 55.0%
GTATACTGCGAAGGTGGGAC+AGG + chr4.4:88768033-88768052 None:intergenic 55.0%
TGCAAACATGCACAGGAGGG+AGG + chr4.4:88771949-88771968 None:intergenic 55.0%
TGTTGTGCAGGGGCTACGTT+GGG - chr4.4:88768645-88768664 MS.gene034071:intron 55.0%
TTGTTGTGCAGGGGCTACGT+TGG - chr4.4:88768644-88768663 MS.gene034071:intron 55.0%
! ACAAGTGCTGCAACCTGACC+AGG + chr4.4:88769812-88769831 None:intergenic 55.0%
! ACAATGGCTCGGAGAAGCTC+TGG + chr4.4:88768707-88768726 None:intergenic 55.0%
! ATCTGAAGTGGGGCTTGGAC+AGG + chr4.4:88772376-88772395 None:intergenic 55.0%
! GTCAGATCTGAAGTGGGGCT+TGG + chr4.4:88772381-88772400 None:intergenic 55.0%
! TATCAATGGCAGGGTAGCGG+TGG + chr4.4:88772455-88772474 None:intergenic 55.0%
! TTATAATGGGGGGACCGGAC+TGG - chr4.4:88772090-88772109 MS.gene034071:intron 55.0%
AATGGTAGGGGAGTGGTGCC+TGG + chr4.4:88772537-88772556 None:intergenic 60.0%
GCTGCAACCTGACCAGGAAC+AGG + chr4.4:88769806-88769825 None:intergenic 60.0%
GTCAGGGCAAGAATCCTCCC+AGG + chr4.4:88770154-88770173 None:intergenic 60.0%
! AATGGCAGGGTAGCGGTGGC+TGG + chr4.4:88772451-88772470 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 88766913 88773671 88766913 ID=MS.gene034071
chr4.4 mRNA 88766913 88773671 88766913 ID=MS.gene034071.t1;Parent=MS.gene034071
chr4.4 exon 88773562 88773671 88773562 ID=MS.gene034071.t1.exon1;Parent=MS.gene034071.t1
chr4.4 CDS 88773562 88773671 88773562 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88771829 88771929 88771829 ID=MS.gene034071.t1.exon2;Parent=MS.gene034071.t1
chr4.4 CDS 88771829 88771929 88771829 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88770722 88770894 88770722 ID=MS.gene034071.t1.exon3;Parent=MS.gene034071.t1
chr4.4 CDS 88770722 88770894 88770722 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88770334 88770565 88770334 ID=MS.gene034071.t1.exon4;Parent=MS.gene034071.t1
chr4.4 CDS 88770334 88770565 88770334 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88770117 88770235 88770117 ID=MS.gene034071.t1.exon5;Parent=MS.gene034071.t1
chr4.4 CDS 88770117 88770235 88770117 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88769372 88769428 88769372 ID=MS.gene034071.t1.exon6;Parent=MS.gene034071.t1
chr4.4 CDS 88769372 88769428 88769372 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88769102 88769286 88769102 ID=MS.gene034071.t1.exon7;Parent=MS.gene034071.t1
chr4.4 CDS 88769102 88769286 88769102 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88767618 88767762 88767618 ID=MS.gene034071.t1.exon8;Parent=MS.gene034071.t1
chr4.4 CDS 88767618 88767762 88767618 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88767390 88767473 88767390 ID=MS.gene034071.t1.exon9;Parent=MS.gene034071.t1
chr4.4 CDS 88767390 88767473 88767390 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88767213 88767276 88767213 ID=MS.gene034071.t1.exon10;Parent=MS.gene034071.t1
chr4.4 CDS 88767213 88767276 88767213 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
chr4.4 exon 88766913 88766923 88766913 ID=MS.gene034071.t1.exon11;Parent=MS.gene034071.t1
chr4.4 CDS 88766913 88766923 88766913 ID=cds.MS.gene034071.t1;Parent=MS.gene034071.t1
Gene Sequence

>MS.gene034071

ATGGGTGAATTGAAAGATACTGAAGTTTACGAGGAAGAGCTTATCGATTATGAAGAAGAAGATGAAAAAGCTCTTGATTCTACTAAACCCACTACTGAATCCGTCAAAAAGTTAGTTTTTTTTCTTCTTCCTTTTATGGAATCAAATTTTTTGTTTTTTTTTGTTCATAATTGTCAATAATTGTGATTTGTCGTTTTGTTATGCTTCATTCATTCATTTATGCGTTTTTGTTTAGTAAAGTTTCGTGCTTGAAAGTGGTTTACGAAAATATTACAATTTTTTTATTTTATTTTATAAGATAATTAATATATAATGATTTTAATTTGATATTGATATTGTTTCAAAATTTTAATAGATTATAGACATAATAAATAGAGAAATATCCAATAGAAGTATGATAATAATATAGTTCTTATGTTGATGCAATCAATGTTAACTGGTTCTGTCTAAGGGAGAGTAGATGTTGATTGACCTGGATTTGGTGCACTCAAAAATTTAGTAGTGAATTTAGTAAAGATTTTGATTCAATTTGTGTAATTGATCAATTTGTGTAATTGAATGGGATAAGGCTTGATTGTGGTTGTTGTCGTCGAGTGTAATTGATCAATTTGTGTAATTGAATGGGATAAGGCTTGATTGTGGTTGTTGTCGTCGAGTCATTGGATAAAGACCGTACAACTTACGTCAGACTTTAGTAAATTGGATTTGTATAAACTTTGAATGTTAGTTGTCGGGTCTTTATCTATTGGCGGCTATTTGCGGACTGCAGTGAGCTAGTGATGATTTAATTTTTTTAACTGTTGCTGATTTGGGTCCTTTGGTGATTTAGTTATATCTTTATGTTTTTTTTATTTTTTTTATTTGTAGTAATTAGTATACTGGTTTTGGCTAGAGAACAAGTATTTATTACACATTTCATTAATAAATATGGTTTAAGTAAGGCACAGTGTGATAATGAATGGCAAGTTGTAAAAACAAATTTTATTTGTGAGTAGTAAAGTTATGAAAAGAGTGAAATTGTGGTAGAGTGGCCTTTGGCTGTACTACATAAGGTCGCTCTTATGGACACAGACAATCATGGCCATTACAATCTCACACTGGCTAAAACACATCTTTACCTGTCCCACCTTCGCAGTATACCTAACTATACAACAACCAAGCCTTATCCCACTATTACTAACATGTATGTCTGAATGGCTTGAAAGCAGGAAGTGGTGTGCCTTTAGCTGTTTATTTACGCGATTGAGTGCTATTTTGATATTTTCCTGATTTGCACCTCAAAAGTAATATTAGGTTTTCATTTGAGGTAAAATGAACATAACGTCCATTCATTTCCGTCTCACTGCTCTCCAATTTTAAGCATCATAGCATTAACTGGTCTCTATTCTTTTCTCTCTGACCCCATTCACAGAAAGCTCAACCTATTTGTTGTTGTCATTCACCTTTCCTAGTCCATATCAAGAATTTGATTTACTTGGTCTTTGTTCCTCGGTCTATAGTCATTTTAGCATTAAATATGGTTAGGGTTTATTTTTTATATGCCTGTGAGTGAGTGTGTGTCTATGTCAAATTATAAACTGATATATATCTTGCATTTATAATCTTTGAGTGTAACAATCATCCAACTATCCACTATATTGTTAGATTGATTTAATCTTCATTATCAAACAATTGATTTGATAACGCTCTCAAGCCACTTTTTGAGTTTCTCTTCCTCACACTGTATTTTCTTTGTTGTGCAGGGGCTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTCCGAGCCATTGTAGATTCAGGGTTTGAGCATCCTTCAGAAGGCAAGTTTTACTATATGCTGCCATTACATGATTCAGTATAGTCAAATGAGTTCTACAGACTTCTTGTGTTTTGGGCTTTGATTAAATTGTCCTTTTCTTTTTAGCATGCCCTTGTTTATATGTAATCTCATGTCATTCTATTTCCATTGTATTGATGTCGTCTACTTTCTGTTACCGTTCTCAATATATTTTACACTAATTGAATCTTGTCAATCAACATAAAGAACATCTGACACTAACTGAATCTTACTCATAAACATAAAGAACAGCTGACACATGAACAGAAAAGAAAATAACCACATAACACCAAGTCTATTAACTCTACCAAGGGCTTTCTTAACTCTTACTTCAGTTCAACAAACAATTTACTAAATAACTCTTCTCTTTTCCTCTCATCTTATAAATTCTCATACAATCATTAGTACAATCGTTAGTTCCTTAGCTCCCTATTCTGTCTTCTAGAGTACCTTTTGATAACAGGCATTGTCTCCAATAGTCAAGTTCCCTCGGATAAATTTTTCAGTGATTTCTTAAGGCTGTCTCTTGCTTATTTGGGGGGTGGCTTATTGATCATTGTATGATTTTGTTCTTTTATCACAACTCTATTAAATTATCATTATTATTACAATGAAGATGAATTTCACATTTTCACCTATGACCAAACACATGTTTTGTTGCTTGTTAATCTCCTTAGTTCTCATCTATCTTTGTTTTTGTTTCATTATTATTATTATTATTATTATTGTTGTTGTTGTTGTTGTTCACTATTCTCTAATCTTGTTTTTTTTCTTTCAATTAATCAGGTAATCATTACTAGCATATTATGAATACATCACAAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCCACTACAATTTTCTTTGCTTCTTCATTAGTGCAACACGAATGCATCCCCCAAGCAATTTTAGGAATGGACGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTGCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGGTATTTCTGCATTAATTTGAATGTAATATATCTCGAATGTTTTGCAAAAGCTATATGTTTGCTAATTGCTAATCTCGAATTACCTTTGTTTCCAATACACTATCACAAACGTATATATTCACATGTGCATACTCAGCAAATGCTTCATTTGTCCAGATTTGCCACGAAGTTGAGAGGTTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAATGAGTGCCCACACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAATGTGACAAGATGCTGGAATCACTTGGTCTATTTCTTCCTCCTTGTCTCCTTAATTGCGCGTTTTGTCGAGTTTGTATATGCGATTTCTTATTTCTTAATATATTTGCCATTTGACCTTTGCAGACATGAGAAAAGATGTGCAAGAGATTTTTAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAGGAAATCCGACCTGTTTGCAAAAAATTCATGCAAGATGTAATTTTCTACTCCCAACTGTCTCAATCATAAGGAAAACAAACTAACTGCACACCTATTAAGAATAGTAGTTAACCTCGTTTAATTTTCTTGATGTAATAAAAATGATTGCATTTCCAAAATTACCCCATATTCATTTAATTTTGTATGGGATTAAATATTATTTTGAGAGCATTTAATAAGGCGAAGTTGATTAGGTTTTCCTTATATTTTAGACTACCAAATATGATTTTTTTTTGCTTATATTTGAGACCAGCGTAGTGTTTATGTGGCAGTTTTTGGACCATATATGCAAGAGCTGTTTTGTCATCCTTCTTATTGTTCCAACTCCTGTTATTTTCGCATCACATTATTGCCATATTTTGTTTAAATGCATTTTGTTGGTTTTGTGCGGTCCTATTTGTGAGGTGTTTTGAATTTTTGATCCTTTTTTCTGTTTTAATTTGTAAATAATGTCTCATGTTATTTTGGAATCACATCATTGCCATTTTTGTTGAATGTCACTAGTTTTTTTTCTTGTTGTAATGCATTTCGTTGATTTTGTGTGGTCATATTTGTGATAAGTTTTGACTTTTTGATCCTTCTTTGTATTAATTTGCAAATATGTTTTATATACCAAAATAACTGAGTTTTTATTTTTTTAATGTATGTCATCTTTATATTCTCATTCATACTCTTTTTCCTCCAGCCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGGTGCGTTTTGTGGGCTTTATTTATTCCCTATTATTGTTGATATCTTTCTGTCTTCTAATTTTTACTTAATTGTCACCTTTTTCAGCACTACATTAAATTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAATAAGTTGCTTGTTGAGTGTAACTTCCCATCAATTTGCATACATTCTGGAATGTCACAAGAAGAAAGGTATTTACACGTTCTTTTGAAATTAATGCCACATGCGTAGTCTTATGTACTCTCAATGCTTTAAGCTGATTTAGGATTTGATAGCATCGTAACGTTCTAAGATGTTTTGTTCCGGGTATATGTTTTATATGCTGGATGTCTGTTAAATAGGACATGGTTGGTTTTTGCCTATGTTACTATATTTTTAGCATTGGTAAACATCATGTTAAAACCAAAATATTGATTATTCGTGCATTATATTATGCAAGATTATCTCTTGGGCAGTTTTGAAAGCTGATGTAATTACCATAGTATTAAGTAAGAGATTGCGTTTTTTATATTGGTGTCATGCACATCACATTTCTCTGCCGAATTTTGTAGGATTGATAGTAAAATGGACTTATGTCTGATTAGGTCTCTGCATTGTTGACTTTAATTTTTATGGTTGTAGCTTTATAAACCCAATCCCTTTCCTGTAAGTTAACCTCCCTCCTGTGCATGTTTGCATAGTGGCTTGCATGATCTTGTGCTTTAAGTAGGTTGGTCCTAATCTCATCAGCAATTTGTCTCTTTGCTTAGCAAGTCTGTTGACTACTTCCAGCTTAGAAGGTATAGTGGTGACCTTCAATTATAATGGGGGGACCGGACTGGATATGTTTAGGTATTTTGTTAAACAACTGTGACAACTCTTCCAGAAGTTTCAAGATCTTGTAAATTGGGAAAGATACATATCCATTTCCTGTTTGAAGAGGGTGTTGTTTCTAGGCATAGTTATCAATTGTGGATTGTGGCACAGTAACTGGATCCAACAATTTTATAATGAGGTGACGACTGTTCTAATTTATTTTAATACATATAAATCAGTCTTAATAAACCAAGATGGCTAGTTGAGCCAGTAATCCGACATATGGCCTGTCCAAGCCCCACTTCAGATCTGACAAGCAAATAAACCAGAGCAACTAGTTAGACTCCATTTAGAATAGTTACCAGCCACCGCTACCCTGCCATTGATAAATATGATTTTAGAAAGATCTCTTGTTTCTTTTATTAGCATATTCATTGAGAAAAGTTACCAGGCACCACTCCCCTACCATTGATAACTATGATTATAGGAAGATCTTCTCTTATTTCTTTTATTAGCATAGATTTATTTTCTCTTATTTGTACAAATCATTTTTATTGTTTTACTATTAAGACAGATTCTTTCTATTAATTTAAGGGTAAAAACTAATAGATTTTTTTTTGGTGAAAAATTAAGGGAATATATGATAGCTGTGTCCTCGTACAAATAAAGTTCAGTAATTTTTCTCTTTTCAAGTTGCAGTCTTAATATTTTTCCATGACTACATGTCTGTTTCAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAGAGAATTCTCGTGGCAACCGATTTAGTAGGGAGGGGGATTGATATAGAGCGTGTCAATATAGTCATCAACTACGACATGCCTGATTCTGCTGATACCTATCTTCACAGGGTAAGTGCTTGATTGAACAAATTTTTATCAATCTAGTTTAAATATAGTTTTTGGCTTGTAGTATGGTATGCTTACTTGCTACCTCCTTGTAAAAGACCTCTGTCCTTTCTATCTTTATATGCTTATCGTCATCTGAACTGGTAGGTCGGTAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCTGGTGACTCTGAAGTTCTTAATCAGGTTAGTTAGGAACTTAATTTTTTTTTCTCTCATTTTCATTGAAACTGGAGGGGAATAGGACCCTTTTTGGCCATTGATGCTTTTATTAACCAATAGCTAAACTTTATTTTCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACAGTAAGATACTTTTTCGTAGTAGTTTATGGTTTTAATAGTTTGAGTAGATGCACAAAGTTTATTAGAACTGGAAGCATTGCATAAATGAAGTTTATCGCAACTGCAAGTGTGATGTTTGTATATAATAAAGTTGATCAGAACTGCAAATAGTGTTTGCATATAATAATACTTGAACATACATGAAATTGAAGCAGAAAATGTTGATTTCATTAATATTTTTCACAAGTGTGATGCTTTATAAAGGTTTTATCTTGGTCACAAATGTAACATCCTTTTGTTTTTACTGCAGTGCCTAATTGA
Protein sequence

>MS.gene034071.t1

MGELKDTEVYEEELIDYEEEDEKALDSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN