AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034072.t1 MTR_4g010565 100.000 426 0 0 1 426 79 504 0.0 879
MS.gene034072.t1 MTR_1g012420 92.365 406 29 1 23 426 22 427 0.0 770
MS.gene034072.t1 MTR_3g107420 89.953 428 40 2 1 426 1 427 0.0 766
MS.gene034072.t1 MTR_3g107420 89.474 247 23 2 1 245 1 246 9.62e-150 427
MS.gene034072.t1 MTR_7g076820 36.806 432 257 8 1 423 97 521 1.34e-82 263
MS.gene034072.t1 MTR_7g076800 36.806 432 257 8 1 423 88 512 1.77e-82 262
MS.gene034072.t1 MTR_7g076830 37.164 409 245 7 16 423 117 514 1.33e-81 260
MS.gene034072.t1 MTR_2g039960 39.946 368 215 6 52 418 47 409 1.11e-78 249
MS.gene034072.t1 MTR_2g099620 39.946 368 215 6 52 418 31 393 5.72e-77 244
MS.gene034072.t1 MTR_2g099620 39.946 368 215 6 52 418 47 409 5.92e-77 245
MS.gene034072.t1 MTR_4g125970 37.845 399 241 7 21 418 17 409 1.04e-76 244
MS.gene034072.t1 MTR_4g125970 37.845 399 241 7 21 418 34 426 3.28e-76 244
MS.gene034072.t1 MTR_8g018400 39.130 368 218 6 52 418 47 409 1.23e-75 241
MS.gene034072.t1 MTR_2g438110 36.410 390 234 9 31 418 25 402 8.03e-74 237
MS.gene034072.t1 MTR_3g467550 33.148 359 221 6 47 390 118 472 3.44e-60 205
MS.gene034072.t1 MTR_7g056830 33.598 378 230 8 47 416 11 375 9.23e-60 201
MS.gene034072.t1 MTR_6g082080 33.333 378 231 8 47 416 11 375 1.87e-59 200
MS.gene034072.t1 MTR_3g467550 33.053 357 220 6 49 390 89 441 5.89e-59 201
MS.gene034072.t1 MTR_2g100230 33.427 356 224 7 47 394 97 447 6.79e-58 197
MS.gene034072.t1 MTR_4g134170 34.501 371 204 6 52 392 293 654 5.68e-57 199
MS.gene034072.t1 MTR_6g005320 33.962 371 204 7 52 392 255 614 1.21e-54 192
MS.gene034072.t1 MTR_3g083690 32.333 433 260 10 12 418 109 534 1.86e-53 188
MS.gene034072.t1 MTR_4g049910 32.099 405 244 12 33 417 41 434 4.95e-53 184
MS.gene034072.t1 MTR_1g054630 35.143 350 204 7 65 394 173 519 6.41e-52 184
MS.gene034072.t1 MTR_2g066050 31.183 372 243 9 44 408 51 416 1.12e-51 181
MS.gene034072.t1 MTR_4g105100 29.891 368 240 7 35 394 196 553 1.49e-51 183
MS.gene034072.t1 MTR_4g114120 35.244 349 200 7 68 393 162 507 1.62e-51 184
MS.gene034072.t1 MTR_3g049990 31.830 399 260 8 16 406 120 514 1.72e-51 185
MS.gene034072.t1 MTR_2g041140 31.903 373 245 6 40 406 135 504 1.55e-50 182
MS.gene034072.t1 MTR_2g032630 30.894 369 238 8 31 392 486 844 1.87e-50 184
MS.gene034072.t1 MTR_3g467550 31.953 338 205 7 46 365 117 447 9.23e-50 175
MS.gene034072.t1 MTR_6g005550 31.063 367 236 9 31 390 155 511 1.03e-49 179
MS.gene034072.t1 MTR_0915s0010 35.540 287 178 5 59 344 2 282 2.05e-49 169
MS.gene034072.t1 MTR_1g095810 30.939 362 227 8 47 392 146 500 3.81e-49 176
MS.gene034072.t1 MTR_7g109720 31.564 358 225 10 47 392 233 582 1.79e-48 176
MS.gene034072.t1 MTR_1g061970 29.782 413 236 12 44 417 78 475 6.47e-48 171
MS.gene034072.t1 MTR_3g449250 30.184 381 235 10 52 416 96 461 1.53e-46 168
MS.gene034072.t1 MTR_3g449250 30.184 381 235 10 52 416 96 461 1.98e-46 168
MS.gene034072.t1 MTR_1g026830 29.427 384 240 10 47 414 148 516 6.18e-46 167
MS.gene034072.t1 MTR_8g027775 30.366 382 239 10 35 392 86 464 3.44e-45 165
MS.gene034072.t1 MTR_3g071620 29.716 387 241 7 41 399 9 392 4.70e-45 165
MS.gene034072.t1 MTR_5g090120 30.366 382 240 10 55 422 90 459 4.96e-45 165
MS.gene034072.t1 MTR_2g007000 31.534 352 224 8 52 392 510 855 8.33e-45 167
MS.gene034072.t1 MTR_7g100820 32.164 342 219 8 56 392 144 477 8.40e-45 164
MS.gene034072.t1 MTR_8g027780 30.811 370 234 9 42 392 102 468 9.86e-45 164
MS.gene034072.t1 MTR_8g027770 29.206 428 271 10 26 426 183 605 3.38e-44 163
MS.gene034072.t1 MTR_4g079320 30.704 355 233 11 46 393 19 367 2.69e-43 162
MS.gene034072.t1 MTR_6g033070 30.025 403 254 11 37 423 131 521 9.86e-42 155
MS.gene034072.t1 MTR_8g097000 28.472 432 266 9 3 415 257 664 6.61e-41 155
MS.gene034072.t1 MTR_5g027840 31.792 346 211 7 64 392 120 457 7.14e-41 152
MS.gene034072.t1 MTR_8g018370 30.792 341 209 7 76 415 3 317 1.09e-40 147
MS.gene034072.t1 MTR_4g112340 30.747 348 220 11 58 391 109 449 1.58e-40 152
MS.gene034072.t1 MTR_7g057250 27.152 453 252 13 46 425 163 610 1.78e-40 154
MS.gene034072.t1 MTR_2g055850 28.611 360 243 8 42 391 87 442 7.37e-40 150
MS.gene034072.t1 MTR_8g027780 30.473 338 213 9 42 360 102 436 5.76e-36 137
MS.gene034072.t1 MTR_2g063080 25.995 427 253 8 44 411 107 529 1.13e-35 138
MS.gene034072.t1 MTR_1g046570 28.061 392 241 10 64 419 9 395 1.67e-35 135
MS.gene034072.t1 MTR_5g092560 27.746 346 222 10 63 391 93 427 1.98e-35 139
MS.gene034072.t1 MTR_4g105100 27.385 325 218 7 35 351 196 510 2.17e-34 134
MS.gene034072.t1 MTR_4g059460 28.155 412 203 16 64 391 63 465 8.99e-34 133
MS.gene034072.t1 MTR_2g043360 27.670 412 205 16 64 391 60 462 3.29e-33 132
MS.gene034072.t1 MTR_6g056080 30.435 322 202 11 82 388 139 453 5.02e-32 129
MS.gene034072.t1 MTR_1g102410 27.200 375 235 10 45 388 43 410 3.51e-31 126
MS.gene034072.t1 MTR_4g068990 27.794 349 217 13 63 391 93 426 3.64e-31 126
MS.gene034072.t1 MTR_5g069330 26.446 363 254 8 47 402 8 364 7.62e-31 123
MS.gene034072.t1 MTR_5g069330 26.446 363 254 8 47 402 4 360 7.65e-31 123
MS.gene034072.t1 MTR_6g039840 26.471 374 236 12 47 392 111 473 2.02e-30 124
MS.gene034072.t1 MTR_3g118120 27.820 399 228 12 37 395 131 509 6.98e-27 113
MS.gene034072.t1 MTR_4g112320 32.189 233 145 7 167 391 40 267 7.51e-27 111
MS.gene034072.t1 MTR_1g022305 26.524 328 174 10 68 392 26 289 6.63e-25 106
MS.gene034072.t1 MTR_1g083130 25.185 405 235 10 46 393 26 419 1.23e-24 106
MS.gene034072.t1 MTR_4g077370 32.487 197 127 5 46 239 250 443 2.91e-23 101
MS.gene034072.t1 MTR_4g077370 29.327 208 112 6 46 245 2 182 6.87e-15 76.6
MS.gene034072.t1 MTR_2g043360 27.333 300 142 11 168 394 51 347 6.60e-23 101
MS.gene034072.t1 MTR_4g131750 24.000 400 252 9 55 414 91 478 1.08e-22 100
MS.gene034072.t1 MTR_6g039840 26.578 301 191 10 111 392 8 297 1.51e-22 100
MS.gene034072.t1 MTR_5g092560 28.293 205 138 5 193 391 15 216 2.56e-21 96.7
MS.gene034072.t1 MTR_4g068990 29.187 209 130 7 193 391 15 215 9.49e-20 92.0
MS.gene034072.t1 MTR_0427s0010 29.048 210 111 6 223 417 23 209 3.89e-19 86.3
MS.gene034072.t1 MTR_8g032230 36.424 151 86 4 47 196 11 152 2.31e-18 82.4
MS.gene034072.t1 MTR_5g077690 24.455 413 234 13 52 392 35 441 1.29e-17 85.1
MS.gene034072.t1 MTR_8g007360 72.000 50 12 1 128 177 10 57 1.27e-15 72.0
MS.gene034072.t1 MTR_8g042690 22.626 358 257 8 46 391 20 369 9.11e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034072.t1 AT5G11170 90.867 427 38 1 1 426 1 427 0.0 772
MS.gene034072.t1 AT5G11200 90.867 427 38 1 1 426 1 427 0.0 772
MS.gene034072.t1 AT5G11200 82.906 468 38 2 1 426 1 468 0.0 751
MS.gene034072.t1 AT5G11170 92.733 344 25 0 83 426 1 344 0.0 666
MS.gene034072.t1 AT5G11200 73.045 486 71 5 1 426 1 486 0.0 661
MS.gene034072.t1 AT4G00660 38.554 415 246 7 11 423 96 503 8.33e-87 273
MS.gene034072.t1 AT4G00660 38.554 415 246 7 11 423 96 503 8.33e-87 273
MS.gene034072.t1 AT2G45810 37.650 417 251 7 9 423 117 526 9.77e-87 274
MS.gene034072.t1 AT3G61240 37.805 410 246 7 16 423 94 496 4.59e-86 271
MS.gene034072.t1 AT3G61240 37.805 410 246 7 16 423 94 496 4.59e-86 271
MS.gene034072.t1 AT1G72730 39.402 368 217 6 52 418 48 410 1.02e-78 249
MS.gene034072.t1 AT3G13920 39.108 381 225 7 39 418 34 408 1.21e-77 247
MS.gene034072.t1 AT3G13920 39.108 381 225 7 39 418 24 398 1.89e-77 246
MS.gene034072.t1 AT1G54270 38.845 381 226 7 39 418 34 408 1.65e-75 241
MS.gene034072.t1 AT3G13920 38.845 381 221 8 39 418 34 403 3.27e-75 240
MS.gene034072.t1 AT3G19760 36.436 376 231 7 45 418 35 404 6.39e-75 239
MS.gene034072.t1 AT3G13920 40.000 355 207 6 39 392 34 383 3.99e-74 238
MS.gene034072.t1 AT3G13920 40.000 355 207 6 39 392 38 387 5.22e-74 238
MS.gene034072.t1 AT1G54270 38.583 381 222 8 39 418 34 403 5.33e-73 234
MS.gene034072.t1 AT1G51380 36.388 371 228 7 47 415 24 388 1.84e-71 230
MS.gene034072.t1 AT3G53110 32.824 393 235 11 44 414 90 475 3.90e-61 206
MS.gene034072.t1 AT1G55150 34.540 359 216 9 47 394 101 451 7.42e-58 197
MS.gene034072.t1 AT1G55150 34.540 359 216 9 47 394 126 476 1.51e-57 197
MS.gene034072.t1 AT5G60990 31.701 388 234 9 47 416 11 385 2.17e-56 192
MS.gene034072.t1 AT4G16630 31.469 429 266 13 6 417 126 543 1.15e-55 197
MS.gene034072.t1 AT5G63120 31.921 354 228 9 47 392 167 515 9.85e-55 191
MS.gene034072.t1 AT2G33730 33.155 374 220 7 52 400 320 688 6.07e-54 191
MS.gene034072.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034072.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034072.t1 AT3G01540 30.918 414 259 13 25 418 126 532 9.74e-53 186
MS.gene034072.t1 AT3G01540 30.918 414 259 13 25 418 126 532 1.13e-52 186
MS.gene034072.t1 AT1G16280 33.134 335 214 7 64 392 77 407 2.16e-51 180
MS.gene034072.t1 AT5G26742 31.871 342 217 5 64 394 121 457 1.58e-50 182
MS.gene034072.t1 AT5G26742 31.871 342 217 5 64 394 121 457 1.59e-50 182
MS.gene034072.t1 AT3G06480 31.793 368 236 7 31 392 426 784 1.89e-50 184
MS.gene034072.t1 AT5G14610 31.921 354 229 9 44 390 228 576 2.45e-50 181
MS.gene034072.t1 AT5G14610 32.479 351 225 9 47 390 163 508 6.31e-50 179
MS.gene034072.t1 AT5G14610 32.479 351 225 9 47 390 163 508 6.49e-50 179
MS.gene034072.t1 AT5G14610 32.479 351 225 9 47 390 171 516 1.01e-49 179
MS.gene034072.t1 AT5G26742 32.416 327 205 5 79 394 43 364 3.72e-49 177
MS.gene034072.t1 AT4G33370 32.597 362 221 8 47 392 99 453 4.91e-49 175
MS.gene034072.t1 AT3G58570 35.652 345 199 8 68 392 169 510 9.33e-49 176
MS.gene034072.t1 AT3G22310 30.400 375 248 6 49 416 120 488 1.73e-48 174
MS.gene034072.t1 AT3G22310 30.400 375 248 6 49 416 120 488 2.12e-48 174
MS.gene034072.t1 AT3G22330 30.295 373 245 8 52 416 111 476 4.04e-48 174
MS.gene034072.t1 AT1G28180 33.841 328 200 7 75 392 3 323 5.14e-48 168
MS.gene034072.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034072.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034072.t1 AT3G58510 32.708 373 227 10 65 418 171 538 5.29e-48 173
MS.gene034072.t1 AT2G47330 31.358 405 243 13 15 392 183 579 7.38e-48 175
MS.gene034072.t1 AT5G14610 31.953 338 218 9 60 390 45 377 1.12e-47 171
MS.gene034072.t1 AT5G14610 31.953 338 218 9 60 390 45 377 1.12e-47 171
MS.gene034072.t1 AT5G51280 31.044 364 224 9 47 392 148 502 3.16e-47 171
MS.gene034072.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034072.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034072.t1 AT2G42520 32.796 372 224 10 68 418 182 548 7.76e-47 171
MS.gene034072.t1 AT1G20920 30.682 352 227 9 52 392 198 543 7.63e-46 169
MS.gene034072.t1 AT5G08610 30.412 388 250 6 23 392 360 745 1.63e-45 169
MS.gene034072.t1 AT1G71370 30.899 356 229 6 52 391 19 373 1.83e-45 166
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT1G20920 30.726 358 227 10 50 392 530 881 2.12e-45 169
MS.gene034072.t1 AT5G63630 29.945 364 235 6 47 392 56 417 4.21e-45 164
MS.gene034072.t1 AT1G31970 33.138 341 212 7 65 392 134 471 7.11e-45 164
MS.gene034072.t1 AT5G63630 29.945 364 235 6 47 392 250 611 4.27e-44 164
MS.gene034072.t1 AT1G77030 30.114 352 235 10 47 392 30 376 3.54e-43 162
MS.gene034072.t1 AT5G08620 29.293 396 259 7 16 392 50 443 2.67e-42 157
MS.gene034072.t1 AT3G09720 31.014 345 219 9 56 392 152 485 4.75e-41 153
MS.gene034072.t1 AT3G09720 31.014 345 219 9 56 392 152 485 4.75e-41 153
MS.gene034072.t1 AT3G02065 30.387 362 226 9 47 392 112 463 1.14e-40 151
MS.gene034072.t1 AT3G02065 30.387 362 226 9 47 392 112 463 1.14e-40 151
MS.gene034072.t1 AT5G05450 27.978 361 238 5 52 391 23 382 2.36e-40 152
MS.gene034072.t1 AT3G18600 30.792 341 218 12 59 388 103 436 7.10e-40 150
MS.gene034072.t1 AT1G51380 35.714 252 155 6 47 296 24 270 5.27e-39 142
MS.gene034072.t1 AT1G12770 26.119 402 240 6 44 389 109 509 2.54e-38 145
MS.gene034072.t1 AT1G12770 26.119 402 240 6 44 389 109 509 2.54e-38 145
MS.gene034072.t1 AT3G09620 30.484 351 200 10 52 392 404 720 4.35e-38 147
MS.gene034072.t1 AT3G09620 30.484 351 200 10 52 392 403 719 4.39e-38 147
MS.gene034072.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034072.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034072.t1 AT5G63120 30.094 319 208 10 47 357 167 478 1.29e-37 142
MS.gene034072.t1 AT5G63120 30.032 313 206 9 47 351 167 474 1.43e-37 142
MS.gene034072.t1 AT3G16840 28.414 454 246 11 45 425 190 637 2.47e-37 145
MS.gene034072.t1 AT3G16840 28.414 454 246 11 45 425 191 638 2.82e-37 144
MS.gene034072.t1 AT5G65900 28.933 356 230 11 47 388 156 502 5.99e-37 143
MS.gene034072.t1 AT3G02065 30.448 335 207 9 74 392 2 326 1.92e-36 137
MS.gene034072.t1 AT3G06480 29.762 336 221 7 31 360 426 752 2.88e-36 141
MS.gene034072.t1 AT1G63250 27.913 412 265 10 6 392 288 692 4.58e-36 141
MS.gene034072.t1 AT5G62190 29.082 392 254 11 50 424 101 485 3.21e-35 138
MS.gene034072.t1 AT5G54910 28.165 387 250 13 26 394 49 425 6.67e-35 137
MS.gene034072.t1 AT5G14610 30.267 337 221 10 34 363 158 487 7.32e-35 135
MS.gene034072.t1 AT2G07750 27.427 412 267 11 6 392 335 739 1.03e-33 134
MS.gene034072.t1 AT2G40700 27.873 409 210 11 64 391 50 454 2.84e-32 129
MS.gene034072.t1 AT1G51380 35.111 225 140 5 47 269 24 244 1.10e-31 122
MS.gene034072.t1 AT1G51380 35.111 225 140 5 47 269 24 244 1.36e-31 122
MS.gene034072.t1 AT4G09730 27.614 373 233 11 47 392 114 476 3.35e-31 126
MS.gene034072.t1 AT5G19210 25.635 394 243 11 18 380 60 434 1.21e-27 114
MS.gene034072.t1 AT4G15850 27.073 410 228 12 52 393 38 444 2.24e-25 108
MS.gene034072.t1 AT3G06980 24.524 420 260 12 9 391 348 747 2.19e-24 106
MS.gene034072.t1 AT4G34910 25.065 387 234 9 46 380 47 429 2.50e-24 105
MS.gene034072.t1 AT1G71280 29.063 320 178 13 52 353 20 308 1.01e-23 101
MS.gene034072.t1 AT1G71280 29.063 320 178 13 52 353 20 308 4.26e-23 101
MS.gene034072.t1 AT5G19210 24.231 260 168 6 145 380 23 277 7.44e-14 72.4
MS.gene034072.t1 AT5G19210 24.231 260 168 6 145 380 23 277 7.44e-14 72.4

Find 88 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGAGCCATTGTAGATTC+AGG 0.254688 4.4:-88782922 MS.gene034072:CDS
GACTCTTCATGGTCTTGTTC+AGG 0.261990 4.4:-88780444 MS.gene034072:intron
CCATCAATTTGCATACATTC+TGG 0.285699 4.4:-88780193 MS.gene034072:CDS
GTCATTTGCCAAGCAAAATC+TGG 0.314855 4.4:-88781904 MS.gene034072:CDS
CACAAGAGAACTAGCTTATC+AGG 0.318557 4.4:-88781794 MS.gene034072:intron
AAGACCATGAAGAGTCAATT+TGG 0.351581 4.4:+88780451 None:intergenic
GTCGGTAGAGCTGGTAGATT+TGG 0.360968 4.4:-88778524 MS.gene034072:CDS
CTACGTTGGGATCCATAGTT+CGG 0.364465 4.4:-88782977 MS.gene034072:CDS
CACATTGTTGTTGGAACACC+TGG 0.373009 4.4:-88781502 MS.gene034072:CDS
CCAGAATGTATGCAAATTGA+TGG 0.376590 4.4:+88780193 None:intergenic
TGACTCTGAAGTTCTTAATC+AGG 0.377300 4.4:-88778462 MS.gene034072:intron
GTGGAGGTGTCAATTTGTTC+AGG 0.377618 4.4:+88778291 None:intergenic
CAGCAAATTGATCCTGTTCC+TGG 0.384946 4.4:-88781844 MS.gene034072:CDS
GTCCATTCCTAAAATTGCTT+GGG 0.387301 4.4:+88781927 None:intergenic
CAAGGTCCTTATCTCTAGTC+AGG 0.399693 4.4:+88781467 None:intergenic
ACATCATCACTTGTTTATCA+TGG 0.400130 4.4:+88781246 None:intergenic
TAGGTTTGAGGTTGATATAA+AGG 0.405007 4.4:-88778319 MS.gene034072:CDS
GAGGCCAAATTGACTCTTCA+TGG 0.406230 4.4:-88780455 MS.gene034072:CDS
GTCACAAAACTTGATCAATT+AGG 0.410712 4.4:+88777972 None:intergenic
AGTCTCGAAATCCCGAACTA+TGG 0.410983 4.4:+88782965 None:intergenic
TGTTGTGCAGGGGCTACGTT+GGG 0.411662 4.4:-88782990 MS.gene034072:intron
TACGTTGGGATCCATAGTTC+GGG 0.412375 4.4:-88782976 MS.gene034072:CDS
TCCGAGCCATTGTAGATTCA+GGG 0.416662 4.4:-88782921 MS.gene034072:CDS
AATTGATCCTGTTCCTGGTC+AGG 0.417735 4.4:-88781839 MS.gene034072:CDS
TTCAGCTTACGATTCTTCTC+TGG 0.442230 4.4:+88780316 None:intergenic
AACTGGTAGGTCGGTAGAGC+TGG 0.447423 4.4:-88778533 MS.gene034072:intron
GGAGAAGCTCTGGTTTCAAC+AGG 0.450921 4.4:+88782941 None:intergenic
CGTCCATTCCTAAAATTGCT+TGG 0.451912 4.4:+88781926 None:intergenic
CATCATCACTTGTTTATCAT+GGG 0.463946 4.4:+88781247 None:intergenic
ATCATCTACATAAATTTCCA+TGG 0.469432 4.4:+88780478 None:intergenic
AGATAGGTATCAGCAGAATC+AGG 0.470818 4.4:+88778698 None:intergenic
TCAGGTGCAATCTAGGTTTG+AGG 0.476362 4.4:-88778331 MS.gene034072:intron
GCTGCAACCTGACCAGGAAC+AGG 0.478885 4.4:+88781832 None:intergenic
TGCTGAACCTCTCAACTTCG+TGG 0.490700 4.4:+88781611 None:intergenic
TTTCAGATTGAAGCGATACA+AGG 0.493825 4.4:-88778819 MS.gene034072:intron
ACAATGGCTCGGAGAAGCTC+TGG 0.495080 4.4:+88782931 None:intergenic
CTGCTGATACCTATCTTCAC+AGG 0.495663 4.4:-88778691 MS.gene034072:CDS
AGCACTTACCCTGTGAAGAT+AGG 0.504586 4.4:+88778682 None:intergenic
GAGTGCCCACACATTGTTGT+TGG 0.508601 4.4:-88781511 MS.gene034072:CDS
CTGGAATGTCACAAGAAGAA+AGG 0.515744 4.4:-88780174 MS.gene034072:intron
CTATGGTGGTGTCAACATCA+AGG 0.524822 4.4:-88781557 MS.gene034072:CDS
GCTGGTAGATTTGGCACCAA+GGG 0.527211 4.4:-88778515 MS.gene034072:CDS
ACAAGTGCTGCAACCTGACC+AGG 0.529516 4.4:+88781826 None:intergenic
TTGTTGTGCAGGGGCTACGT+TGG 0.530806 4.4:-88782991 MS.gene034072:intron
TGATGAATGTGACAAGATGC+TGG 0.533632 4.4:-88781416 MS.gene034072:CDS
TTGCCAAGCAAAATCTGGGA+TGG 0.544090 4.4:-88781899 MS.gene034072:CDS
CTGACTAGAGATAAGGACCT+TGG 0.544589 4.4:-88781466 MS.gene034072:CDS
TAGTAAAACTTGCCTTCTGA+AGG 0.545476 4.4:+88782889 None:intergenic
GGGTTTGAGCATCCTTCAGA+AGG 0.549144 4.4:-88782901 MS.gene034072:intron
TCATTTGCCAAGCAAAATCT+GGG 0.556430 4.4:-88781903 MS.gene034072:CDS
AGCTGGTAGATTTGGCACCA+AGG 0.557173 4.4:-88778516 MS.gene034072:CDS
CTCGTGGCAACCGATTTAGT+AGG 0.561671 4.4:-88778770 MS.gene034072:CDS
CAGAATGTATGCAAATTGAT+GGG 0.563982 4.4:+88780194 None:intergenic
TCTTGCCCTGACTAGAGATA+AGG 0.564398 4.4:-88781473 MS.gene034072:CDS
TGCCAAGCAAAATCTGGGAT+GGG 0.564980 4.4:-88781898 MS.gene034072:CDS
TCCATTCCTAAAATTGCTTG+GGG 0.565327 4.4:+88781928 None:intergenic
GGCAACCGATTTAGTAGGGA+GGG 0.566914 4.4:-88778765 MS.gene034072:CDS
GACAAGATGCTGGAATCACT+TGG 0.566919 4.4:-88781406 MS.gene034072:intron
AAAAGTAATTGCAAGCCCCT+TGG 0.567368 4.4:+88778499 None:intergenic
CGATACAAGGGCTTCAAAGA+GGG 0.568834 4.4:-88778806 MS.gene034072:CDS
TCGTGGCAACCGATTTAGTA+GGG 0.570668 4.4:-88778769 MS.gene034072:CDS
ACCCTGAATCTACAATGGCT+CGG 0.572434 4.4:+88782920 None:intergenic
GGTGTTCCAACAACAATGTG+TGG 0.577454 4.4:+88781505 None:intergenic
CAACCGATTTAGTAGGGAGG+GGG 0.579596 4.4:-88778763 MS.gene034072:CDS
TCATCTACATAAATTTCCAT+GGG 0.581419 4.4:+88780479 None:intergenic
GCAACCGATTTAGTAGGGAG+GGG 0.585593 4.4:-88778764 MS.gene034072:CDS
AGATTTGCCACGAAGTTGAG+AGG 0.588345 4.4:-88781618 MS.gene034072:CDS
GGAAATTTATGTAGATGATG+AGG 0.602038 4.4:-88780474 MS.gene034072:CDS
GCGATACAAGGGCTTCAAAG+AGG 0.604199 4.4:-88778807 MS.gene034072:CDS
AAGGTCCTTATCTCTAGTCA+GGG 0.605894 4.4:+88781468 None:intergenic
CTCAAACCCTGAATCTACAA+TGG 0.606652 4.4:+88782915 None:intergenic
ACCTTGGTTTGAAGAATGTG+AGG 0.606908 4.4:-88781450 MS.gene034072:CDS
GTCAGGGCAAGAATCCTCCC+AGG 0.611803 4.4:+88781484 None:intergenic
ATCATCACTTGTTTATCATG+GGG 0.613006 4.4:+88781248 None:intergenic
GATACAAGGGCTTCAAAGAG+GGG 0.617527 4.4:-88778805 MS.gene034072:CDS
GTGTTCCAACAACAATGTGT+GGG 0.623994 4.4:+88781506 None:intergenic
GCCTCACATTCTTCAAACCA+AGG 0.633068 4.4:+88781449 None:intergenic
TTCAGATTGAAGCGATACAA+GGG 0.636996 4.4:-88778818 MS.gene034072:intron
AAGTATCTTACTGTATGTGG+AGG 0.637443 4.4:+88778275 None:intergenic
GATAAGCTAGTTCTCTTGTG+TGG 0.648872 4.4:+88781797 None:intergenic
CTGGTAGATTTGGCACCAAG+GGG 0.659086 4.4:-88778514 MS.gene034072:CDS
TGCTGATACCTATCTTCACA+GGG 0.659100 4.4:-88778690 MS.gene034072:intron
ACATTGTTGTTGGAACACCT+GGG 0.674278 4.4:-88781501 MS.gene034072:CDS
GGGGAAGCAGAGAATTCTCG+TGG 0.676806 4.4:-88778786 MS.gene034072:CDS
GAAAGATACTGAAGTTTACG+AGG 0.689385 4.4:-88784711 MS.gene034072:CDS
CCATTCCTAAAATTGCTTGG+GGG 0.689622 4.4:+88781929 None:intergenic
TGGCAACCGATTTAGTAGGG+AGG 0.690164 4.4:-88778766 MS.gene034072:CDS
TTGTTGTTGGAACACCTGGG+AGG 0.722510 4.4:-88781498 MS.gene034072:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATTAAATGAATAT+GGG + chr4.4:88781670-88781689 None:intergenic 10.0%
!!! AAAACTAATAGATTTTTTTT+TGG - chr4.4:88783758-88783777 MS.gene034072:intron 10.0%
!!! ATATTCATTTAATTTTGTAT+GGG - chr4.4:88781670-88781689 MS.gene034072:intron 10.0%
!! AAAAAATTTGATTCCATAAA+AGG + chr4.4:88778118-88778137 None:intergenic 15.0%
!! AAATGCATTTAAACAAAATA+TGG + chr4.4:88781899-88781918 None:intergenic 15.0%
!! AAGCAAAAAAAAATCATATT+TGG + chr4.4:88781763-88781782 None:intergenic 15.0%
!! ACACATTTCATTAATAAATA+TGG - chr4.4:88778894-88778913 MS.gene034072:intron 15.0%
!! AGATTCTTTCTATTAATTTA+AGG - chr4.4:88783732-88783751 MS.gene034072:intron 15.0%
!! CATACAAAATTAAATGAATA+TGG + chr4.4:88781671-88781690 None:intergenic 15.0%
!! GATTCTTTCTATTAATTTAA+GGG - chr4.4:88783733-88783752 MS.gene034072:intron 15.0%
!! TAATAAATATGGTTTAAGTA+AGG - chr4.4:88778905-88778924 MS.gene034072:intron 15.0%
!! TACAAAATTAAATGAATATG+GGG + chr4.4:88781669-88781688 None:intergenic 15.0%
!! TACAAATTAAAACAGAAAAA+AGG + chr4.4:88781969-88781988 None:intergenic 15.0%
!! TATTATTATCATACTTCTAT+TGG + chr4.4:88778372-88778391 None:intergenic 15.0%
!!! AAAAAAAACTAACTTTTTGA+CGG + chr4.4:88778089-88778108 None:intergenic 15.0%
!!! AAATAAAAACTCAGTTATTT+TGG + chr4.4:88782159-88782178 None:intergenic 15.0%
!!! ATTGTTGACTTTAATTTTTA+TGG - chr4.4:88782957-88782976 MS.gene034072:CDS 15.0%
!!! CATATTCATTTAATTTTGTA+TGG - chr4.4:88781669-88781688 MS.gene034072:intron 15.0%
!!! TCTAAAATCATATTTATCAA+TGG + chr4.4:88783542-88783561 None:intergenic 15.0%
!!! TCTAGTTTAAATATAGTTTT+TGG - chr4.4:88784071-88784090 MS.gene034072:intron 15.0%
!!! TTTTTTTCTTTCAATTAATC+AGG - chr4.4:88780610-88780629 MS.gene034072:intron 15.0%
!!! TTTTTTTGGTGAAAAATTAA+GGG - chr4.4:88783772-88783791 MS.gene034072:intron 15.0%
!!! TTTTTTTTGGTGAAAAATTA+AGG - chr4.4:88783771-88783790 MS.gene034072:intron 15.0%
!! AAATCAATCTAACAATATAG+TGG + chr4.4:88779618-88779637 None:intergenic 20.0%
!! AGAAAGATATCAACAATAAT+AGG + chr4.4:88782315-88782334 None:intergenic 20.0%
!! AGTAAATCAAATTCTTGATA+TGG + chr4.4:88779441-88779460 None:intergenic 20.0%
!! AGTGTAAAATATATTGAGAA+CGG + chr4.4:88780006-88780025 None:intergenic 20.0%
!! ATAAGCATATAAAGATAGAA+AGG + chr4.4:88784146-88784165 None:intergenic 20.0%
!! ATCAATTTGTGTAATTGAAT+GGG - chr4.4:88778526-88778545 MS.gene034072:CDS 20.0%
!! ATGAGATTACATATAAACAA+GGG + chr4.4:88779940-88779959 None:intergenic 20.0%
!! ATTTGTAGTAATTAGTATAC+TGG - chr4.4:88778845-88778864 MS.gene034072:intron 20.0%
!! GAAAGATATCAACAATAATA+GGG + chr4.4:88782314-88782333 None:intergenic 20.0%
!! TATGAATACATCACAAAAAT+TGG - chr4.4:88780651-88780670 MS.gene034072:intron 20.0%
!! TGAAAATAAAGTTTAGCTAT+TGG + chr4.4:88784360-88784379 None:intergenic 20.0%
!! TGCTAAAAATATAGTAACAT+AGG + chr4.4:88782726-88782745 None:intergenic 20.0%
!! TTTAGCATTAAATATGGTTA+GGG - chr4.4:88779489-88779508 MS.gene034072:intron 20.0%
!! TTTGCAAATTAATACAAAGA+AGG + chr4.4:88782123-88782142 None:intergenic 20.0%
!!! AAAACCTAATATTACTTTTG+AGG + chr4.4:88779264-88779283 None:intergenic 20.0%
!!! AATAATGTCTCATGTTATTT+TGG - chr4.4:88781989-88782008 MS.gene034072:intron 20.0%
!!! AATAGCTAAACTTTATTTTC+AGG - chr4.4:88784359-88784378 MS.gene034072:intron 20.0%
!!! AATTTTTCAGTGATTTCTTA+AGG - chr4.4:88780342-88780361 MS.gene034072:intron 20.0%
!!! AGTCATTTTAGCATTAAATA+TGG - chr4.4:88779483-88779502 MS.gene034072:intron 20.0%
!!! ATTTGGTAGTCTAAAATATA+AGG + chr4.4:88781746-88781765 None:intergenic 20.0%
!!! TAATATTAGGTTTTCATTTG+AGG - chr4.4:88779270-88779289 MS.gene034072:intron 20.0%
!!! TATCAAGAATTTGATTTACT+TGG - chr4.4:88779441-88779460 MS.gene034072:intron 20.0%
!!! TATTTTGAGAGCATTTAATA+AGG - chr4.4:88781702-88781721 MS.gene034072:intron 20.0%
!!! TGTTACTATATTTTTAGCAT+TGG - chr4.4:88782727-88782746 MS.gene034072:intron 20.0%
!!! TTTGTTTAAATGCATTTTGT+TGG - chr4.4:88781902-88781921 MS.gene034072:CDS 20.0%
!!! TTTTAGCATTAAATATGGTT+AGG - chr4.4:88779488-88779507 MS.gene034072:intron 20.0%
!!! TTTTGACAAAAATAACAACT+TGG + chr4.4:88782445-88782464 None:intergenic 20.0%
!!! TTTTTTTCTTCTTCCTTTTA+TGG - chr4.4:88778102-88778121 MS.gene034072:intron 20.0%
! AAACTTTGAATGTTAGTTGT+CGG - chr4.4:88778697-88778716 MS.gene034072:CDS 25.0%
! AAATCATATTTATCAATGGC+AGG + chr4.4:88783538-88783557 None:intergenic 25.0%
! AATACATCACAAAAATTGGT+TGG - chr4.4:88780655-88780674 MS.gene034072:intron 25.0%
! AATCATAGTTATCAATGGTA+GGG + chr4.4:88783623-88783642 None:intergenic 25.0%
! AATCATATTTATCAATGGCA+GGG + chr4.4:88783537-88783556 None:intergenic 25.0%
! AATGCTATGATGCTTAAAAT+TGG + chr4.4:88779338-88779357 None:intergenic 25.0%
! ACATACATGTTAGTAATAGT+GGG + chr4.4:88779155-88779174 None:intergenic 25.0%
! ACTATCAATCCTACAAAATT+CGG + chr4.4:88782906-88782925 None:intergenic 25.0%
! AGATATAACTAAATCACCAA+AGG + chr4.4:88778803-88778822 None:intergenic 25.0%
! AGTTTCAAGATCTTGTAAAT+TGG - chr4.4:88783231-88783250 MS.gene034072:intron 25.0%
! ATCATCTACATAAATTTCCA+TGG + chr4.4:88782233-88782252 None:intergenic 25.0%
! ATGAGAATTTATAAGATGAG+AGG + chr4.4:88780220-88780239 None:intergenic 25.0%
! ATTATGCAAGATTATCTCTT+GGG - chr4.4:88782794-88782813 MS.gene034072:intron 25.0%
! CAATCTCTTACTTAATACTA+TGG + chr4.4:88782844-88782863 None:intergenic 25.0%
! CATGAGATTACATATAAACA+AGG + chr4.4:88779941-88779960 None:intergenic 25.0%
! CCTATAATCATAGTTATCAA+TGG + chr4.4:88783628-88783647 None:intergenic 25.0%
! GATCAATTTGTGTAATTGAA+TGG - chr4.4:88778525-88778544 MS.gene034072:CDS 25.0%
! GGTTAACTACTATTCTTAAT+AGG + chr4.4:88781598-88781617 None:intergenic 25.0%
! GTTTCAAGATCTTGTAAATT+GGG - chr4.4:88783232-88783251 MS.gene034072:intron 25.0%
! TAATCATAGTTATCAATGGT+AGG + chr4.4:88783624-88783643 None:intergenic 25.0%
! TACATCAAGAAAATTAAACG+AGG + chr4.4:88781619-88781638 None:intergenic 25.0%
! TATTATGCAAGATTATCTCT+TGG - chr4.4:88782793-88782812 MS.gene034072:intron 25.0%
! TCACCTCATTATAAAATTGT+TGG + chr4.4:88783343-88783362 None:intergenic 25.0%
! TCATCTACATAAATTTCCAT+GGG + chr4.4:88782232-88782251 None:intergenic 25.0%
! TGGTAAACCTTTACATTAAA+AGG - chr4.4:88780675-88780694 MS.gene034072:intron 25.0%
! TTATGAAAAGAGTGAAATTG+TGG - chr4.4:88778986-88779005 MS.gene034072:intron 25.0%
!! AAAACAGCAACTTTTATATC+TGG + chr4.4:88781131-88781150 None:intergenic 25.0%
!! AAATGAATATGGGGTAATTT+TGG + chr4.4:88781660-88781679 None:intergenic 25.0%
!! ATTTAATGTAGTGCTGAAAA+AGG + chr4.4:88782364-88782383 None:intergenic 25.0%
!! CCATTGATAACTATGATTAT+AGG - chr4.4:88783625-88783644 MS.gene034072:intron 25.0%
!! GATCCAACAATTTTATAATG+AGG - chr4.4:88783337-88783356 MS.gene034072:intron 25.0%
!! TGCACGAATAATCAATATTT+TGG + chr4.4:88782770-88782789 None:intergenic 25.0%
!! TTGTAGGATTGATAGTAAAA+TGG - chr4.4:88782910-88782929 MS.gene034072:CDS 25.0%
!!! AAAAAGTATCTTACTGTATG+TGG + chr4.4:88784439-88784458 None:intergenic 25.0%
!!! AGAGATTGCGTTTTTTATAT+TGG - chr4.4:88782856-88782875 MS.gene034072:intron 25.0%
!!! AGTAATTAGTATACTGGTTT+TGG - chr4.4:88778851-88778870 MS.gene034072:intron 25.0%
!!! ATAAAAGTTGCTGTTTTCTA+TGG - chr4.4:88781134-88781153 MS.gene034072:intron 25.0%
!!! GCTTTATAAAGGTTTTATCT+TGG - chr4.4:88784677-88784696 MS.gene034072:CDS 25.0%
!!! TACTTTTTCGTAGTAGTTTA+TGG - chr4.4:88784451-88784470 MS.gene034072:intron 25.0%
!!! TTGGTTAATAAAAGCATCAA+TGG + chr4.4:88784341-88784360 None:intergenic 25.0%
!!! TTTTTAACTGTTGCTGATTT+GGG - chr4.4:88778776-88778795 MS.gene034072:CDS 25.0%
!!! TTTTTTAACTGTTGCTGATT+TGG - chr4.4:88778775-88778794 MS.gene034072:CDS 25.0%
AACAAAGAAAATACAGTGTG+AGG + chr4.4:88779702-88779721 None:intergenic 30.0%
AACTTTGAATGTTAGTTGTC+GGG - chr4.4:88778698-88778717 MS.gene034072:CDS 30.0%
AAGTCTATTAACTCTACCAA+GGG - chr4.4:88780137-88780156 MS.gene034072:intron 30.0%
ACAAAGATAGATGAGAACTA+AGG + chr4.4:88780520-88780539 None:intergenic 30.0%
ACAAGTGTGATGCTTTATAA+AGG - chr4.4:88784666-88784685 MS.gene034072:CDS 30.0%
ACATCATCACTTGTTTATCA+TGG + chr4.4:88781465-88781484 None:intergenic 30.0%
ACCTTTACATTAAAAGGATC+TGG - chr4.4:88780681-88780700 MS.gene034072:intron 30.0%
AGAAGCAAAGAAAATTGTAG+TGG + chr4.4:88780736-88780755 None:intergenic 30.0%
ATCACTGAAAAATTTATCCG+AGG + chr4.4:88780336-88780355 None:intergenic 30.0%
ATCATAGTTATCAATGGTAG+GGG + chr4.4:88783622-88783641 None:intergenic 30.0%
ATCATCACTTGTTTATCATG+GGG + chr4.4:88781463-88781482 None:intergenic 30.0%
ATTCAAAACACCTCACAAAT+AGG + chr4.4:88781939-88781958 None:intergenic 30.0%
ATTCATTGAGAAAAGTTACC+AGG - chr4.4:88783589-88783608 MS.gene034072:intron 30.0%
CAGAATGTATGCAAATTGAT+GGG + chr4.4:88782517-88782536 None:intergenic 30.0%
CAGATCATATATACTTACTG+AGG - chr4.4:88780704-88780723 MS.gene034072:intron 30.0%
CAGCATATAAAACATATACC+CGG + chr4.4:88782670-88782689 None:intergenic 30.0%
CATCATCACTTGTTTATCAT+GGG + chr4.4:88781464-88781483 None:intergenic 30.0%
CTAGTGACATTCAACAAAAA+TGG + chr4.4:88782028-88782047 None:intergenic 30.0%
GACATACATGTTAGTAATAG+TGG + chr4.4:88779156-88779175 None:intergenic 30.0%
GACTATACTGAATCATGTAA+TGG + chr4.4:88779852-88779871 None:intergenic 30.0%
GGAAATTTATGTAGATGATG+AGG - chr4.4:88782234-88782253 MS.gene034072:intron 30.0%
TAATGTGATGCGAAAATAAC+AGG + chr4.4:88781873-88781892 None:intergenic 30.0%
TACGTCAGACTTTAGTAAAT+TGG - chr4.4:88778666-88778685 MS.gene034072:intron 30.0%
TACTAACATGTATGTCTGAA+TGG - chr4.4:88779160-88779179 MS.gene034072:intron 30.0%
TATAAAGATAGAAAGGACAG+AGG + chr4.4:88784139-88784158 None:intergenic 30.0%
TCAAATTCTTGATATGGACT+AGG + chr4.4:88779435-88779454 None:intergenic 30.0%
TCACTGAAAAATTTATCCGA+GGG + chr4.4:88780335-88780354 None:intergenic 30.0%
TCAGTCTTAATAAACCAAGA+TGG - chr4.4:88783395-88783414 MS.gene034072:intron 30.0%
TGCACAAAGTTTATTAGAAC+TGG - chr4.4:88784493-88784512 MS.gene034072:intron 30.0%
TGCACCTCAAAAGTAATATT+AGG - chr4.4:88779257-88779276 MS.gene034072:intron 30.0%
TGGTGACCTTCAATTATAAT+GGG - chr4.4:88783150-88783169 MS.gene034072:intron 30.0%
TTAAGCATCATAGCATTAAC+TGG - chr4.4:88779341-88779360 MS.gene034072:intron 30.0%
TTACAAGATCTTGAAACTTC+TGG + chr4.4:88783229-88783248 None:intergenic 30.0%
TTGATGCAATCAATGTTAAC+TGG - chr4.4:88778403-88778422 MS.gene034072:intron 30.0%
TTGTGTAATTGAATGGGATA+AGG - chr4.4:88778532-88778551 MS.gene034072:intron 30.0%
! AAATGGACTTATGTCTGATT+AGG - chr4.4:88782927-88782946 MS.gene034072:CDS 30.0%
! AGTTCTTAATCAGGTTAGTT+AGG - chr4.4:88784255-88784274 MS.gene034072:intron 30.0%
! ATACGTTTGTGATAGTGTAT+TGG + chr4.4:88781030-88781049 None:intergenic 30.0%
! ATGTTAGTAATAGTGGGATA+AGG + chr4.4:88779149-88779168 None:intergenic 30.0%
! TACTGAACTTTATTTGTACG+AGG + chr4.4:88783816-88783835 None:intergenic 30.0%
! TAGTTATCAATTGTGGATTG+TGG - chr4.4:88783303-88783322 MS.gene034072:intron 30.0%
! TCAATGCTTTAAGCTGATTT+AGG - chr4.4:88782608-88782627 MS.gene034072:intron 30.0%
! TCATTTTCATTGAAACTGGA+GGG - chr4.4:88784297-88784316 MS.gene034072:intron 30.0%
! TCTCTCATTTTCATTGAAAC+TGG - chr4.4:88784293-88784312 MS.gene034072:intron 30.0%
! TGATAGTGTATTGGAAACAA+AGG + chr4.4:88781021-88781040 None:intergenic 30.0%
! TTAATAAGGCGAAGTTGATT+AGG - chr4.4:88781716-88781735 MS.gene034072:intron 30.0%
!! CTAACAATATAGTGGATAGT+TGG + chr4.4:88779610-88779629 None:intergenic 30.0%
!! TAGGTTTGAGGTTGATATAA+AGG - chr4.4:88784389-88784408 MS.gene034072:intron 30.0%
!! TGTATTTTCTTTGTTGTGCA+GGG - chr4.4:88779707-88779726 MS.gene034072:intron 30.0%
!! TTAATAGACTTGGTGTTATG+TGG + chr4.4:88780128-88780147 None:intergenic 30.0%
!!! ATAGTTTTTGGCTTGTAGTA+TGG - chr4.4:88784083-88784102 MS.gene034072:intron 30.0%
!!! TGAATTTTTTGCAAACAGGT+CGG + chr4.4:88781513-88781532 None:intergenic 30.0%
!!! TGCATGAATTTTTTGCAAAC+AGG + chr4.4:88781517-88781536 None:intergenic 30.0%
!!! TTTATTTTCAGGTGCAATCT+AGG - chr4.4:88784370-88784389 MS.gene034072:intron 30.0%
AAAGTCTGACGTAAGTTGTA+CGG + chr4.4:88778659-88778678 None:intergenic 35.0%
AAGACCATGAAGAGTCAATT+TGG + chr4.4:88782260-88782279 None:intergenic 35.0%
AAGTATCTTACTGTATGTGG+AGG + chr4.4:88784436-88784455 None:intergenic 35.0%
AGACAATGCCTGTTATCAAA+AGG + chr4.4:88780298-88780317 None:intergenic 35.0%
AGGAAGAGAAACTCAAAAAG+TGG + chr4.4:88779682-88779701 None:intergenic 35.0%
AGTAGACGACATCAATACAA+TGG + chr4.4:88779975-88779994 None:intergenic 35.0%
ATACCTAAACATATCCAGTC+CGG + chr4.4:88783180-88783199 None:intergenic 35.0%
ATCCATTTCCTGTTTGAAGA+GGG - chr4.4:88783265-88783284 MS.gene034072:intron 35.0%
ATGCTGGATGTCTGTTAAAT+AGG - chr4.4:88782684-88782703 MS.gene034072:intron 35.0%
CAAAACAGCTCTTGCATATA+TGG + chr4.4:88781827-88781846 None:intergenic 35.0%
CAAAACATGTGTTTGGTCAT+AGG + chr4.4:88780483-88780502 None:intergenic 35.0%
CAAGCAACAAAACATGTGTT+TGG + chr4.4:88780490-88780509 None:intergenic 35.0%
CAAGTCTATTAACTCTACCA+AGG - chr4.4:88780136-88780155 MS.gene034072:intron 35.0%
CCAGAATGTATGCAAATTGA+TGG + chr4.4:88782518-88782537 None:intergenic 35.0%
CCATCAATTTGCATACATTC+TGG - chr4.4:88782515-88782534 MS.gene034072:intron 35.0%
CTAGGCATAGTTATCAATTG+TGG - chr4.4:88783296-88783315 MS.gene034072:intron 35.0%
CTTGGTAGAGTTAATAGACT+TGG + chr4.4:88780138-88780157 None:intergenic 35.0%
GAAAGATACTGAAGTTTACG+AGG - chr4.4:88777997-88778016 MS.gene034072:intron 35.0%
GACAAATTGCTGATGAGATT+AGG + chr4.4:88783083-88783102 None:intergenic 35.0%
GATGTCTGTTAAATAGGACA+TGG - chr4.4:88782690-88782709 MS.gene034072:intron 35.0%
GGTGAATGACAACAACAAAT+AGG + chr4.4:88779409-88779428 None:intergenic 35.0%
GGTGACCTTCAATTATAATG+GGG - chr4.4:88783151-88783170 MS.gene034072:intron 35.0%
GTCCATTCCTAAAATTGCTT+GGG + chr4.4:88780784-88780803 None:intergenic 35.0%
GTGACCTTCAATTATAATGG+GGG - chr4.4:88783152-88783171 MS.gene034072:intron 35.0%
GTGGTGACCTTCAATTATAA+TGG - chr4.4:88783149-88783168 MS.gene034072:intron 35.0%
TAAAGTTTCGTGCTTGAAAG+TGG - chr4.4:88778221-88778240 MS.gene034072:intron 35.0%
TAACTTACAGGAAAGGGATT+GGG + chr4.4:88782998-88783017 None:intergenic 35.0%
TAGTAAAACTTGCCTTCTGA+AGG + chr4.4:88779822-88779841 None:intergenic 35.0%
TATAGTTAGGTATACTGCGA+AGG + chr4.4:88779115-88779134 None:intergenic 35.0%
TATCCATTTCCTGTTTGAAG+AGG - chr4.4:88783264-88783283 MS.gene034072:intron 35.0%
TCATTTGCCAAGCAAAATCT+GGG - chr4.4:88780805-88780824 MS.gene034072:intron 35.0%
TCCATTCCTAAAATTGCTTG+GGG + chr4.4:88780783-88780802 None:intergenic 35.0%
TCCTTATGATTGAGACAGTT+GGG + chr4.4:88781557-88781576 None:intergenic 35.0%
TCGCGTAAATAAACAGCTAA+AGG + chr4.4:88779208-88779227 None:intergenic 35.0%
TCTGTTAAATAGGACATGGT+TGG - chr4.4:88782694-88782713 MS.gene034072:intron 35.0%
TGGCTGGTAACTATTCTAAA+TGG + chr4.4:88783508-88783527 None:intergenic 35.0%
TTAACTTACAGGAAAGGGAT+TGG + chr4.4:88782999-88783018 None:intergenic 35.0%
TTCAGATTGAAGCGATACAA+GGG - chr4.4:88783890-88783909 MS.gene034072:intron 35.0%
TTCCTTATGATTGAGACAGT+TGG + chr4.4:88781558-88781577 None:intergenic 35.0%
TTTCAGATTGAAGCGATACA+AGG - chr4.4:88783889-88783908 MS.gene034072:intron 35.0%
! AAAGCATCAATGGCCAAAAA+GGG + chr4.4:88784331-88784350 None:intergenic 35.0%
! AAGGGCATGCTAAAAAGAAA+AGG + chr4.4:88779922-88779941 None:intergenic 35.0%
! AGTGTTTATGTGGCAGTTTT+TGG - chr4.4:88781800-88781819 MS.gene034072:CDS 35.0%
! ATCTTGTGCTTTAAGTAGGT+TGG - chr4.4:88783056-88783075 MS.gene034072:intron 35.0%
! ATCTTTTCTCATGTCTGCAA+AGG + chr4.4:88781416-88781435 None:intergenic 35.0%
! ATTTCTCTGCCGAATTTTGT+AGG - chr4.4:88782894-88782913 MS.gene034072:intron 35.0%
! CATGATCTTGTGCTTTAAGT+AGG - chr4.4:88783052-88783071 MS.gene034072:intron 35.0%
! CATTTTCATTGAAACTGGAG+GGG - chr4.4:88784298-88784317 MS.gene034072:intron 35.0%
! CGGGTATATGTTTTATATGC+TGG - chr4.4:88782668-88782687 MS.gene034072:intron 35.0%
! CTACAGACTTCTTGTGTTTT+GGG - chr4.4:88779881-88779900 MS.gene034072:intron 35.0%
! CTCATTTTCATTGAAACTGG+AGG - chr4.4:88784296-88784315 MS.gene034072:intron 35.0%
! GCCAGATCCTTTTAATGTAA+AGG + chr4.4:88780685-88780704 None:intergenic 35.0%
! GTACTCTAGAAGACAGAATA+GGG + chr4.4:88780276-88780295 None:intergenic 35.0%
! TCTACAGACTTCTTGTGTTT+TGG - chr4.4:88779880-88779899 MS.gene034072:intron 35.0%
! TGACCTTCAATTATAATGGG+GGG - chr4.4:88783153-88783172 MS.gene034072:intron 35.0%
! TTTACTTGGTCTTTGTTCCT+CGG - chr4.4:88779455-88779474 MS.gene034072:intron 35.0%
!! AAAAGCATCAATGGCCAAAA+AGG + chr4.4:88784332-88784351 None:intergenic 35.0%
!! ATGTTAACTGGTTCTGTCTA+AGG - chr4.4:88778415-88778434 MS.gene034072:intron 35.0%
!! ATTACTTTTGTGTCTTCTGC+TGG - chr4.4:88784223-88784242 MS.gene034072:intron 35.0%
!! CTAGAGTACCTTTTGATAAC+AGG - chr4.4:88780287-88780306 MS.gene034072:CDS 35.0%
!! CTGTATTTTCTTTGTTGTGC+AGG - chr4.4:88779706-88779725 MS.gene034072:intron 35.0%
!! GTATTTTCTTTGTTGTGCAG+GGG - chr4.4:88779708-88779727 MS.gene034072:intron 35.0%
!! TGACTCTGAAGTTCTTAATC+AGG - chr4.4:88784246-88784265 MS.gene034072:intron 35.0%
!! TGTTAACTGGTTCTGTCTAA+GGG - chr4.4:88778416-88778435 MS.gene034072:intron 35.0%
!! TTCTTGATATGGACTAGGAA+AGG + chr4.4:88779430-88779449 None:intergenic 35.0%
!!! AAAGTTGCTGTTTTCTATGG+TGG - chr4.4:88781137-88781156 MS.gene034072:intron 35.0%
!!! CGTTCTAAGATGTTTTGTTC+CGG - chr4.4:88782648-88782667 MS.gene034072:intron 35.0%
!!! GTTCTAAGATGTTTTGTTCC+GGG - chr4.4:88782649-88782668 MS.gene034072:intron 35.0%
!!! TGCATTTCGTTGATTTTGTG+TGG - chr4.4:88782066-88782085 MS.gene034072:intron 35.0%
!!! TGCATTTTGTTGGTTTTGTG+CGG - chr4.4:88781912-88781931 MS.gene034072:CDS 35.0%
!!! TTACTTTTGAGGTGCAAATC+AGG + chr4.4:88779253-88779272 None:intergenic 35.0%
!!! TTTTTGACGGATTCAGTAGT+GGG + chr4.4:88778076-88778095 None:intergenic 35.0%
AAAAGTAATTGCAAGCCCCT+TGG + chr4.4:88784212-88784231 None:intergenic 40.0%
AAAATTGGAGAGCAGTGAGA+CGG + chr4.4:88779323-88779342 None:intergenic 40.0%
AAACAACACCCTCTTCAAAC+AGG + chr4.4:88783276-88783295 None:intergenic 40.0%
AAGGCTGTCTCTTGCTTATT+TGG - chr4.4:88780361-88780380 MS.gene034072:intron 40.0%
AAGGTCCTTATCTCTAGTCA+GGG + chr4.4:88781243-88781262 None:intergenic 40.0%
AATGGGATAAGGCTTGATTG+TGG - chr4.4:88778543-88778562 MS.gene034072:intron 40.0%
ACCTTATGTAGTACAGCCAA+AGG + chr4.4:88779020-88779039 None:intergenic 40.0%
ACTACATAAGGTCGCTCTTA+TGG - chr4.4:88779028-88779047 MS.gene034072:intron 40.0%
AGAGTGAAATTGTGGTAGAG+TGG - chr4.4:88778994-88779013 MS.gene034072:intron 40.0%
AGATAGGTATCAGCAGAATC+AGG + chr4.4:88784013-88784032 None:intergenic 40.0%
AGGCTGTCTCTTGCTTATTT+GGG - chr4.4:88780362-88780381 MS.gene034072:intron 40.0%
AGGTTGAGCTTTCTGTGAAT+GGG + chr4.4:88779389-88779408 None:intergenic 40.0%
AGTACATAAGACTACGCATG+TGG + chr4.4:88782587-88782606 None:intergenic 40.0%
ATGCTTATCGTCATCTGAAC+TGG - chr4.4:88784158-88784177 MS.gene034072:intron 40.0%
ATTTATCAATGGCAGGGTAG+CGG + chr4.4:88783531-88783550 None:intergenic 40.0%
CAGGAGTTGGAACAATAAGA+AGG + chr4.4:88781854-88781873 None:intergenic 40.0%
CCATTCCTAAAATTGCTTGG+GGG + chr4.4:88780782-88780801 None:intergenic 40.0%
CGTCCATTCCTAAAATTGCT+TGG + chr4.4:88780785-88780804 None:intergenic 40.0%
CTACATAAATTTCCATGGGC+TGG + chr4.4:88782228-88782247 None:intergenic 40.0%
CTCAAACCCTGAATCTACAA+TGG + chr4.4:88779796-88779815 None:intergenic 40.0%
CTGAAACAGACATGTAGTCA+TGG + chr4.4:88783875-88783894 None:intergenic 40.0%
CTGGAATGTCACAAGAAGAA+AGG - chr4.4:88782534-88782553 MS.gene034072:intron 40.0%
CTTATGGACACAGACAATCA+TGG - chr4.4:88779044-88779063 MS.gene034072:intron 40.0%
GATGCGAAAATAACAGGAGT+TGG + chr4.4:88781867-88781886 None:intergenic 40.0%
GCTAAAATGACTATAGACCG+AGG + chr4.4:88779475-88779494 None:intergenic 40.0%
GGAGGTTAACTTACAGGAAA+GGG + chr4.4:88783004-88783023 None:intergenic 40.0%
GGCACTGCAGTAAAAACAAA+AGG + chr4.4:88784718-88784737 None:intergenic 40.0%
GTAAGAGTTAAGAAAGCCCT+TGG + chr4.4:88780156-88780175 None:intergenic 40.0%
GTCATTTGCCAAGCAAAATC+TGG - chr4.4:88780804-88780823 MS.gene034072:intron 40.0%
GTGTTCCAACAACAATGTGT+GGG + chr4.4:88781205-88781224 None:intergenic 40.0%
GTTGTCGGGTCTTTATCTAT+TGG - chr4.4:88778712-88778731 MS.gene034072:CDS 40.0%
TAGCCAGTGTGAGATTGTAA+TGG + chr4.4:88779070-88779089 None:intergenic 40.0%
TATCTATTGGCGGCTATTTG+CGG - chr4.4:88778725-88778744 MS.gene034072:CDS 40.0%
TCATGTCTGCAAAGGTCAAA+TGG + chr4.4:88781408-88781427 None:intergenic 40.0%
TCCCAACTGTCTCAATCATA+AGG - chr4.4:88781553-88781572 MS.gene034072:CDS 40.0%
TGATGAATGTGACAAGATGC+TGG - chr4.4:88781292-88781311 MS.gene034072:intron 40.0%
TGCTGATACCTATCTTCACA+GGG - chr4.4:88784018-88784037 MS.gene034072:intron 40.0%
TTATCGTCATCTGAACTGGT+AGG - chr4.4:88784162-88784181 MS.gene034072:intron 40.0%
TTCAGCTTACGATTCTTCTC+TGG + chr4.4:88782395-88782414 None:intergenic 40.0%
TTGACTACTTCCAGCTTAGA+AGG - chr4.4:88783122-88783141 MS.gene034072:intron 40.0%
TTTGCTTGTCAGATCTGAAG+TGG + chr4.4:88783461-88783480 None:intergenic 40.0%
! AAGGACAGAGGTCTTTTACA+AGG + chr4.4:88784127-88784146 None:intergenic 40.0%
! ACATTGTTGTTGGAACACCT+GGG - chr4.4:88781207-88781226 MS.gene034072:CDS 40.0%
! ACCTTGGTTTGAAGAATGTG+AGG - chr4.4:88781258-88781277 MS.gene034072:CDS 40.0%
! AGAGTAGATGTTGATTGACC+TGG - chr4.4:88778439-88778458 MS.gene034072:intron 40.0%
! AGGCACAGTGTGATAATGAA+TGG - chr4.4:88778925-88778944 MS.gene034072:intron 40.0%
! AGTAATAGTGGGATAAGGCT+TGG + chr4.4:88779144-88779163 None:intergenic 40.0%
! CACAAGAGAACTAGCTTATC+AGG - chr4.4:88780914-88780933 MS.gene034072:intron 40.0%
! GATAAGCTAGTTCTCTTGTG+TGG + chr4.4:88780914-88780933 None:intergenic 40.0%
! GATGTTGATTGACCTGGATT+TGG - chr4.4:88778445-88778464 MS.gene034072:intron 40.0%
! GGCTTGGTTGTTGTATAGTT+AGG + chr4.4:88779128-88779147 None:intergenic 40.0%
! GGTACTCTAGAAGACAGAAT+AGG + chr4.4:88780277-88780296 None:intergenic 40.0%
! TAGGTTGAGCTTTCTGTGAA+TGG + chr4.4:88779390-88779409 None:intergenic 40.0%
! TTCAATTATAATGGGGGGAC+CGG - chr4.4:88783158-88783177 MS.gene034072:intron 40.0%
! TTCCAGCTTAGAAGGTATAG+TGG - chr4.4:88783130-88783149 MS.gene034072:intron 40.0%
! TTGCTTGTCAGATCTGAAGT+GGG + chr4.4:88783460-88783479 None:intergenic 40.0%
!! TTGAAGAGGGTGTTGTTTCT+AGG - chr4.4:88783278-88783297 MS.gene034072:intron 40.0%
!!! CTTTTTGACGGATTCAGTAG+TGG + chr4.4:88778077-88778096 None:intergenic 40.0%
!!! TTTTTGAGTGCACCAAATCC+AGG + chr4.4:88778460-88778479 None:intergenic 40.0%
AACGCGCAATTAAGGAGACA+AGG + chr4.4:88781341-88781360 None:intergenic 45.0%
AATCCCCCTCCCTACTAAAT+CGG + chr4.4:88783951-88783970 None:intergenic 45.0%
AATGGCTTGAAAGCAGGAAG+TGG - chr4.4:88779178-88779197 MS.gene034072:intron 45.0%
AATTGATCCTGTTCCTGGTC+AGG - chr4.4:88780869-88780888 MS.gene034072:intron 45.0%
AATTGTGGTAGAGTGGCCTT+TGG - chr4.4:88779001-88779020 MS.gene034072:intron 45.0%
ACCCTGAATCTACAATGGCT+CGG + chr4.4:88779791-88779810 None:intergenic 45.0%
ACTATGCAAACATGCACAGG+AGG + chr4.4:88783026-88783045 None:intergenic 45.0%
AGACCAGCGTAGTGTTTATG+TGG - chr4.4:88781790-88781809 MS.gene034072:intron 45.0%
AGATTTGCCACGAAGTTGAG+AGG - chr4.4:88781090-88781109 MS.gene034072:intron 45.0%
AGCACTTACCCTGTGAAGAT+AGG + chr4.4:88784029-88784048 None:intergenic 45.0%
AGCAGTGAGACGGAAATGAA+TGG + chr4.4:88779313-88779332 None:intergenic 45.0%
AGTCTCGAAATCCCGAACTA+TGG + chr4.4:88779746-88779765 None:intergenic 45.0%
AGTTAGGTATACTGCGAAGG+TGG + chr4.4:88779112-88779131 None:intergenic 45.0%
AGTTATCAATGGTAGGGGAG+TGG + chr4.4:88783617-88783636 None:intergenic 45.0%
ATAGACACACACTCACTCAC+AGG + chr4.4:88779530-88779549 None:intergenic 45.0%
ATCCGAGGGAACTTGACTAT+TGG + chr4.4:88780321-88780340 None:intergenic 45.0%
CAAGGTCCTTATCTCTAGTC+AGG + chr4.4:88781244-88781263 None:intergenic 45.0%
CACCACTATACCTTCTAAGC+TGG + chr4.4:88783135-88783154 None:intergenic 45.0%
CACCCTCTTCAAACAGGAAA+TGG + chr4.4:88783270-88783289 None:intergenic 45.0%
CAGCAAATTGATCCTGTTCC+TGG - chr4.4:88780864-88780883 MS.gene034072:intron 45.0%
CATTGAAACTGGAGGGGAAT+AGG - chr4.4:88784304-88784323 MS.gene034072:intron 45.0%
CGATACAAGGGCTTCAAAGA+GGG - chr4.4:88783902-88783921 MS.gene034072:intron 45.0%
CTACGTTGGGATCCATAGTT+CGG - chr4.4:88779731-88779750 MS.gene034072:intron 45.0%
CTATGCAAACATGCACAGGA+GGG + chr4.4:88783025-88783044 None:intergenic 45.0%
CTCCAATAGTCAAGTTCCCT+CGG - chr4.4:88780316-88780335 MS.gene034072:CDS 45.0%
CTCGACAAAACGCGCAATTA+AGG + chr4.4:88781349-88781368 None:intergenic 45.0%
CTGACTAGAGATAAGGACCT+TGG - chr4.4:88781242-88781261 MS.gene034072:CDS 45.0%
CTGCTGATACCTATCTTCAC+AGG - chr4.4:88784017-88784036 MS.gene034072:intron 45.0%
CTGTCTCTTGCTTATTTGGG+GGG - chr4.4:88780365-88780384 MS.gene034072:intron 45.0%
GAAGACAGAATAGGGAGCTA+AGG + chr4.4:88780268-88780287 None:intergenic 45.0%
GACAAGATGCTGGAATCACT+TGG - chr4.4:88781302-88781321 MS.gene034072:intron 45.0%
GATACAAGGGCTTCAAAGAG+GGG - chr4.4:88783903-88783922 MS.gene034072:intron 45.0%
GCCTCACATTCTTCAAACCA+AGG + chr4.4:88781262-88781281 None:intergenic 45.0%
GCCTTTGGCTGTACTACATA+AGG - chr4.4:88779016-88779035 MS.gene034072:intron 45.0%
GCTGTCTCTTGCTTATTTGG+GGG - chr4.4:88780364-88780383 MS.gene034072:intron 45.0%
GGCTGTCTCTTGCTTATTTG+GGG - chr4.4:88780363-88780382 MS.gene034072:intron 45.0%
GGGAGGTTAACTTACAGGAA+AGG + chr4.4:88783005-88783024 None:intergenic 45.0%
GGTCCCCCCATTATAATTGA+AGG + chr4.4:88783159-88783178 None:intergenic 45.0%
GGTGTTCCAACAACAATGTG+TGG + chr4.4:88781206-88781225 None:intergenic 45.0%
GGTTGAGCTTTCTGTGAATG+GGG + chr4.4:88779388-88779407 None:intergenic 45.0%
GTCGGGTCTTTATCTATTGG+CGG - chr4.4:88778715-88778734 MS.gene034072:CDS 45.0%
GTTAGGTATACTGCGAAGGT+GGG + chr4.4:88779111-88779130 None:intergenic 45.0%
TACGTTGGGATCCATAGTTC+GGG - chr4.4:88779732-88779751 MS.gene034072:intron 45.0%
TCAGGTGCAATCTAGGTTTG+AGG - chr4.4:88784377-88784396 MS.gene034072:intron 45.0%
TCCGAGCCATTGTAGATTCA+GGG - chr4.4:88779787-88779806 MS.gene034072:intron 45.0%
TCCTGTGCATGTTTGCATAG+TGG - chr4.4:88783025-88783044 MS.gene034072:intron 45.0%
TCTCAACTTCGTGGCAAATC+TGG + chr4.4:88781091-88781110 None:intergenic 45.0%
TCTTGCCCTGACTAGAGATA+AGG - chr4.4:88781235-88781254 MS.gene034072:CDS 45.0%
TGAGCCAGTAATCCGACATA+TGG - chr4.4:88783423-88783442 MS.gene034072:intron 45.0%
TGGAGTCTAACTAGTTGCTC+TGG + chr4.4:88783488-88783507 None:intergenic 45.0%
TGGCCATTACAATCTCACAC+TGG - chr4.4:88779064-88779083 MS.gene034072:intron 45.0%
TGTCTGAATGGCTTGAAAGC+AGG - chr4.4:88779172-88779191 MS.gene034072:intron 45.0%
TTGCCAAGCAAAATCTGGGA+TGG - chr4.4:88780809-88780828 MS.gene034072:intron 45.0%
TTTGTGCGGTCCTATTTGTG+AGG - chr4.4:88781926-88781945 MS.gene034072:CDS 45.0%
! CACATTGTTGTTGGAACACC+TGG - chr4.4:88781206-88781225 MS.gene034072:CDS 45.0%
! CTATGGTGGTGTCAACATCA+AGG - chr4.4:88781151-88781170 MS.gene034072:intron 45.0%
! GACAGAGGTCTTTTACAAGG+AGG + chr4.4:88784124-88784143 None:intergenic 45.0%
! GAGGCCAAATTGACTCTTCA+TGG - chr4.4:88782253-88782272 MS.gene034072:intron 45.0%
! GTTTTCAGCTACACTCAGCA+AGG - chr4.4:88781483-88781502 MS.gene034072:CDS 45.0%
! TCGTGGCAACCGATTTAGTA+GGG - chr4.4:88783939-88783958 MS.gene034072:intron 45.0%
! TGCATCCCCCAAGCAATTTT+AGG - chr4.4:88780774-88780793 MS.gene034072:intron 45.0%
! TGCCAAGCAAAATCTGGGAT+GGG - chr4.4:88780810-88780829 MS.gene034072:intron 45.0%
! TGCTTGTCAGATCTGAAGTG+GGG + chr4.4:88783459-88783478 None:intergenic 45.0%
! TTCCCATCCCAGATTTTGCT+TGG + chr4.4:88780815-88780834 None:intergenic 45.0%
!! CATAAATTTCCATGGGCTGG+AGG + chr4.4:88782225-88782244 None:intergenic 45.0%
!! CCCCCAAGCAATTTTAGGAA+TGG - chr4.4:88780779-88780798 MS.gene034072:intron 45.0%
!! GTGGAGGTGTCAATTTGTTC+AGG + chr4.4:88784420-88784439 None:intergenic 45.0%
!! TGTTGCTGATTTGGGTCCTT+TGG - chr4.4:88778784-88778803 MS.gene034072:CDS 45.0%
AGCTGGTAGATTTGGCACCA+AGG - chr4.4:88784192-88784211 MS.gene034072:intron 50.0%
CAGGAGGGAGGTTAACTTAC+AGG + chr4.4:88783010-88783029 None:intergenic 50.0%
CAGGCCATATGTCGGATTAC+TGG + chr4.4:88783430-88783449 None:intergenic 50.0%
CGTCATCTGAACTGGTAGGT+CGG - chr4.4:88784166-88784185 MS.gene034072:intron 50.0%
CTCCGAGCCATTGTAGATTC+AGG - chr4.4:88779786-88779805 MS.gene034072:intron 50.0%
CTGCCACATAAACACTACGC+TGG + chr4.4:88781796-88781815 None:intergenic 50.0%
CTGGTAGATTTGGCACCAAG+GGG - chr4.4:88784194-88784213 MS.gene034072:intron 50.0%
GAGTGCCCACACATTGTTGT+TGG - chr4.4:88781197-88781216 MS.gene034072:CDS 50.0%
GCCACTATGCAAACATGCAC+AGG + chr4.4:88783029-88783048 None:intergenic 50.0%
GCGATACAAGGGCTTCAAAG+AGG - chr4.4:88783901-88783920 MS.gene034072:intron 50.0%
GCGCAATTAAGGAGACAAGG+AGG + chr4.4:88781338-88781357 None:intergenic 50.0%
GCTGGTAGATTTGGCACCAA+GGG - chr4.4:88784193-88784212 MS.gene034072:intron 50.0%
GGGTTTGAGCATCCTTCAGA+AGG - chr4.4:88779807-88779826 MS.gene034072:intron 50.0%
GGTTGTTGTCGTCGAGTCAT+TGG - chr4.4:88778626-88778645 MS.gene034072:intron 50.0%
GTCGGTAGAGCTGGTAGATT+TGG - chr4.4:88784184-88784203 MS.gene034072:intron 50.0%
TCTCTTGCTTATTTGGGGGG+TGG - chr4.4:88780368-88780387 MS.gene034072:intron 50.0%
TGCTGAACCTCTCAACTTCG+TGG + chr4.4:88781100-88781119 None:intergenic 50.0%
! ACTCTTTTTCCTCCAGCCCA+TGG - chr4.4:88782213-88782232 MS.gene034072:intron 50.0%
! ACTGGCTCAACTAGCCATCT+TGG + chr4.4:88783412-88783431 None:intergenic 50.0%
! CAACCGATTTAGTAGGGAGG+GGG - chr4.4:88783945-88783964 MS.gene034072:intron 50.0%
! CTCGTGGCAACCGATTTAGT+AGG - chr4.4:88783938-88783957 MS.gene034072:intron 50.0%
! GAGGGGAATAGGACCCTTTT+TGG - chr4.4:88784315-88784334 MS.gene034072:intron 50.0%
! GCAACCGATTTAGTAGGGAG+GGG - chr4.4:88783944-88783963 MS.gene034072:intron 50.0%
! GGACCGGACTGGATATGTTT+AGG - chr4.4:88783174-88783193 MS.gene034072:intron 50.0%
! GGAGAAGCTCTGGTTTCAAC+AGG + chr4.4:88779770-88779789 None:intergenic 50.0%
! GGCAACCGATTTAGTAGGGA+GGG - chr4.4:88783943-88783962 MS.gene034072:intron 50.0%
! GTGGATTGTGGCACAGTAAC+TGG - chr4.4:88783315-88783334 MS.gene034072:intron 50.0%
! TGGCAACCGATTTAGTAGGG+AGG - chr4.4:88783942-88783961 MS.gene034072:intron 50.0%
! TTGTTGTTGGAACACCTGGG+AGG - chr4.4:88781210-88781229 MS.gene034072:CDS 50.0%
AACTGGTAGGTCGGTAGAGC+TGG - chr4.4:88784175-88784194 MS.gene034072:intron 55.0%
GGCTTGGACAGGCCATATGT+CGG + chr4.4:88783438-88783457 None:intergenic 55.0%
GGGGAAGCAGAGAATTCTCG+TGG - chr4.4:88783922-88783941 MS.gene034072:intron 55.0%
GTATACTGCGAAGGTGGGAC+AGG + chr4.4:88779106-88779125 None:intergenic 55.0%
TGCAAACATGCACAGGAGGG+AGG + chr4.4:88783022-88783041 None:intergenic 55.0%
TGTTGTGCAGGGGCTACGTT+GGG - chr4.4:88779718-88779737 MS.gene034072:intron 55.0%
TTGTTGTGCAGGGGCTACGT+TGG - chr4.4:88779717-88779736 MS.gene034072:intron 55.0%
! ACAAGTGCTGCAACCTGACC+AGG + chr4.4:88780885-88780904 None:intergenic 55.0%
! ACAATGGCTCGGAGAAGCTC+TGG + chr4.4:88779780-88779799 None:intergenic 55.0%
! ATCTGAAGTGGGGCTTGGAC+AGG + chr4.4:88783449-88783468 None:intergenic 55.0%
! GTCAGATCTGAAGTGGGGCT+TGG + chr4.4:88783454-88783473 None:intergenic 55.0%
! TATCAATGGCAGGGTAGCGG+TGG + chr4.4:88783528-88783547 None:intergenic 55.0%
! TTATAATGGGGGGACCGGAC+TGG - chr4.4:88783163-88783182 MS.gene034072:intron 55.0%
AATGGTAGGGGAGTGGTGCC+TGG + chr4.4:88783610-88783629 None:intergenic 60.0%
GCTGCAACCTGACCAGGAAC+AGG + chr4.4:88780879-88780898 None:intergenic 60.0%
GTCAGGGCAAGAATCCTCCC+AGG + chr4.4:88781227-88781246 None:intergenic 60.0%
! AATGGCAGGGTAGCGGTGGC+TGG + chr4.4:88783524-88783543 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 88777986 88784744 88777986 ID=MS.gene034072
chr4.4 mRNA 88777986 88784744 88777986 ID=MS.gene034072.t1;Parent=MS.gene034072
chr4.4 exon 88784635 88784744 88784635 ID=MS.gene034072.t1.exon1;Parent=MS.gene034072.t1
chr4.4 CDS 88784635 88784744 88784635 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88782902 88783002 88782902 ID=MS.gene034072.t1.exon2;Parent=MS.gene034072.t1
chr4.4 CDS 88782902 88783002 88782902 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88781795 88781967 88781795 ID=MS.gene034072.t1.exon3;Parent=MS.gene034072.t1
chr4.4 CDS 88781795 88781967 88781795 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88781407 88781638 88781407 ID=MS.gene034072.t1.exon4;Parent=MS.gene034072.t1
chr4.4 CDS 88781407 88781638 88781407 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88781190 88781308 88781190 ID=MS.gene034072.t1.exon5;Parent=MS.gene034072.t1
chr4.4 CDS 88781190 88781308 88781190 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88780445 88780501 88780445 ID=MS.gene034072.t1.exon6;Parent=MS.gene034072.t1
chr4.4 CDS 88780445 88780501 88780445 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88780175 88780359 88780175 ID=MS.gene034072.t1.exon7;Parent=MS.gene034072.t1
chr4.4 CDS 88780175 88780359 88780175 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88778691 88778835 88778691 ID=MS.gene034072.t1.exon8;Parent=MS.gene034072.t1
chr4.4 CDS 88778691 88778835 88778691 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88778463 88778546 88778463 ID=MS.gene034072.t1.exon9;Parent=MS.gene034072.t1
chr4.4 CDS 88778463 88778546 88778463 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88778286 88778349 88778286 ID=MS.gene034072.t1.exon10;Parent=MS.gene034072.t1
chr4.4 CDS 88778286 88778349 88778286 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
chr4.4 exon 88777986 88777996 88777986 ID=MS.gene034072.t1.exon11;Parent=MS.gene034072.t1
chr4.4 CDS 88777986 88777996 88777986 ID=cds.MS.gene034072.t1;Parent=MS.gene034072.t1
Gene Sequence

>MS.gene034072

ATGGGTGAATTGAAAGATACTGAAGTTTACGAGGAAGAGCTTATCGATTATGAAGAAGAAGATGAAAAAGCTCTTGATTCTACTAAACCCACTACTGAATCCGTCAAAAAGTTAGTTTTTTTTCTTCTTCCTTTTATGGAATCAAATTTTTTGTTTTTTTTTGTTCATAATTGTCAATAATTGTGATTTGTCGTTTTGTTATGCTTCATTCATTCATTTATGCGTTTTTGTTTAGTAAAGTTTCGTGCTTGAAAGTGGTTTACGAAAATATTACAATTTTTTTATTTTATTTTATAAGATAATTAATATATAATGATTTTAATTTGATATTGATATTGTTTCAAAATTTTAATAGATTATAGACATAATAAATAGAGAAATATCCAATAGAAGTATGATAATAATATAGTTCTTATGTTGATGCAATCAATGTTAACTGGTTCTGTCTAAGGGAGAGTAGATGTTGATTGACCTGGATTTGGTGCACTCAAAAATTTAGTAGTGAATTTAGTAAAGATTTTGATTCAATTTGTGTAATTGATCAATTTGTGTAATTGAATGGGATAAGGCTTGATTGTGGTTGTTGTCGTCGAGTGTAATTGATCAATTTGTGTAATTGAATGGGATAAGGCTTGATTGTGGTTGTTGTCGTCGAGTCATTGGATAAAGACCGTACAACTTACGTCAGACTTTAGTAAATTGGATTTGTATAAACTTTGAATGTTAGTTGTCGGGTCTTTATCTATTGGCGGCTATTTGCGGACTGCAGTGAGCTAGTGATGATTTAATTTTTTTAACTGTTGCTGATTTGGGTCCTTTGGTGATTTAGTTATATCTTTATGTTTTTTTTATTTTTTTTATTTGTAGTAATTAGTATACTGGTTTTGGCTAGAGAACAAGTATTTATTACACATTTCATTAATAAATATGGTTTAAGTAAGGCACAGTGTGATAATGAATGGCAAGTTGTAAAAACAAATTTTATTTGTGAGTAGTAAAGTTATGAAAAGAGTGAAATTGTGGTAGAGTGGCCTTTGGCTGTACTACATAAGGTCGCTCTTATGGACACAGACAATCATGGCCATTACAATCTCACACTGGCTAAAACACATCTTTACCTGTCCCACCTTCGCAGTATACCTAACTATACAACAACCAAGCCTTATCCCACTATTACTAACATGTATGTCTGAATGGCTTGAAAGCAGGAAGTGGTGTGCCTTTAGCTGTTTATTTACGCGATTGAGTGCTATTTTGATATTTTCCTGATTTGCACCTCAAAAGTAATATTAGGTTTTCATTTGAGGTAAAATGAACATAACGTCCATTCATTTCCGTCTCACTGCTCTCCAATTTTAAGCATCATAGCATTAACTGGTCTCTATTCTTTTCTCTCTGACCCCATTCACAGAAAGCTCAACCTATTTGTTGTTGTCATTCACCTTTCCTAGTCCATATCAAGAATTTGATTTACTTGGTCTTTGTTCCTCGGTCTATAGTCATTTTAGCATTAAATATGGTTAGGGTTTATTTTTTATATGCCTGTGAGTGAGTGTGTGTCTATGTCAAATTATAAACTGATATATATCTTGCATTTATAATCTTTGAGTGTAACAATCATCCAACTATCCACTATATTGTTAGATTGATTTAATCTTCATTATCAAACAATTGATTTGATAACGCTCTCAAGCCACTTTTTGAGTTTCTCTTCCTCACACTGTATTTTCTTTGTTGTGCAGGGGCTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTCCGAGCCATTGTAGATTCAGGGTTTGAGCATCCTTCAGAAGGCAAGTTTTACTATATGCTGCCATTACATGATTCAGTATAGTCAAATGAGTTCTACAGACTTCTTGTGTTTTGGGCTTTGATTAAATTGTCCTTTTCTTTTTAGCATGCCCTTGTTTATATGTAATCTCATGTCATTCTATTTCCATTGTATTGATGTCGTCTACTTTCTGTTACCGTTCTCAATATATTTTACACTAATTGAATCTTGTCAATCAACATAAAGAACATCTGACACTAACTGAATCTTACTCATAAACATAAAGAACAGCTGACACATGAACAGAAAAGAAAATAACCACATAACACCAAGTCTATTAACTCTACCAAGGGCTTTCTTAACTCTTACTTCAGTTCAACAAACAATTTACTAAATAACTCTTCTCTTTTCCTCTCATCTTATAAATTCTCATACAATCATTAGTACAATCGTTAGTTCCTTAGCTCCCTATTCTGTCTTCTAGAGTACCTTTTGATAACAGGCATTGTCTCCAATAGTCAAGTTCCCTCGGATAAATTTTTCAGTGATTTCTTAAGGCTGTCTCTTGCTTATTTGGGGGGTGGCTTATTGATCATTGTATGATTTTGTTCTTTTATCACAACTCTATTAAATTATCATTATTATTACAATGAAGATGAATTTCACATTTTCACCTATGACCAAACACATGTTTTGTTGCTTGTTAATCTCCTTAGTTCTCATCTATCTTTGTTTTTGTTTCATTATTATTATTATTATTATTATTGTTGTTGTTGTTGTTGTTCACTATTCTCTAATCTTGTTTTTTTTCTTTCAATTAATCAGGTAATCATTACTAGCATATTATGAATACATCACAAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCCACTACAATTTTCTTTGCTTCTTCATTAGTGCAACACGAATGCATCCCCCAAGCAATTTTAGGAATGGACGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTGCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGGTATTTCTGCATTAATTTGAATGTAATATATCTCGAATGTTTTGCAAAAGCTATATGTTTGCTAATTGCTAATCTCGAATTACCTTTGTTTCCAATACACTATCACAAACGTATATATTCACATGTGCATACTCAGCAAATGCTTCATTTGTCCAGATTTGCCACGAAGTTGAGAGGTTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAATGAGTGCCCACACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAATGTGACAAGATGCTGGAATCACTTGGTCTATTTCTTCCTCCTTGTCTCCTTAATTGCGCGTTTTGTCGAGTTTGTATATGCGATTTCTTATTTCTTAATATATTTGCCATTTGACCTTTGCAGACATGAGAAAAGATGTGCAAGAGATTTTTAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAGGAAATCCGACCTGTTTGCAAAAAATTCATGCAAGATGTAATTTTCTACTCCCAACTGTCTCAATCATAAGGAAAACAAACTAACTGCACACCTATTAAGAATAGTAGTTAACCTCGTTTAATTTTCTTGATGTAATAAAAATGATTGCATTTCCAAAATTACCCCATATTCATTTAATTTTGTATGGGATTAAATATTATTTTGAGAGCATTTAATAAGGCGAAGTTGATTAGGTTTTCCTTATATTTTAGACTACCAAATATGATTTTTTTTTGCTTATATTTGAGACCAGCGTAGTGTTTATGTGGCAGTTTTTGGACCATATATGCAAGAGCTGTTTTGTCATCCTTCTTATTGTTCCAACTCCTGTTATTTTCGCATCACATTATTGCCATATTTTGTTTAAATGCATTTTGTTGGTTTTGTGCGGTCCTATTTGTGAGGTGTTTTGAATTTTTGATCCTTTTTTCTGTTTTAATTTGTAAATAATGTCTCATGTTATTTTGGAATCACATCATTGCCATTTTTGTTGAATGTCACTAGTTTTTTTTCTTGTTGTAATGCATTTCGTTGATTTTGTGTGGTCATATTTGTGATAAGTTTTGACTTTTTGATCCTTCTTTGTATTAATTTGCAAATATGTTTTATATACCAAAATAACTGAGTTTTTATTTTTTTAATGTATGTCATCTTTATATTCTCATTCATACTCTTTTTCCTCCAGCCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGGTGCGTTTTGTGGGCTTTATTTATTCCCTATTATTGTTGATATCTTTCTGTCTTCTAATTTTTACTTAATTGTCACCTTTTTCAGCACTACATTAAATTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAATAAGTTGCTTGTTGAGTGTAACTTCCCATCAATTTGCATACATTCTGGAATGTCACAAGAAGAAAGGTATTTACACGTTCTTTTGAAATTAATGCCACATGCGTAGTCTTATGTACTCTCAATGCTTTAAGCTGATTTAGGATTTGATAGCATCGTAACGTTCTAAGATGTTTTGTTCCGGGTATATGTTTTATATGCTGGATGTCTGTTAAATAGGACATGGTTGGTTTTTGCCTATGTTACTATATTTTTAGCATTGGTAAACATCATGTTAAAACCAAAATATTGATTATTCGTGCATTATATTATGCAAGATTATCTCTTGGGCAGTTTTGAAAGCTGATGTAATTACCATAGTATTAAGTAAGAGATTGCGTTTTTTATATTGGTGTCATGCACATCACATTTCTCTGCCGAATTTTGTAGGATTGATAGTAAAATGGACTTATGTCTGATTAGGTCTCTGCATTGTTGACTTTAATTTTTATGGTTGTAGCTTTATAAACCCAATCCCTTTCCTGTAAGTTAACCTCCCTCCTGTGCATGTTTGCATAGTGGCTTGCATGATCTTGTGCTTTAAGTAGGTTGGTCCTAATCTCATCAGCAATTTGTCTCTTTGCTTAGCAAGTCTGTTGACTACTTCCAGCTTAGAAGGTATAGTGGTGACCTTCAATTATAATGGGGGGACCGGACTGGATATGTTTAGGTATTTTGTTAAACAACTGTGACAACTCTTCCAGAAGTTTCAAGATCTTGTAAATTGGGAAAGATACATATCCATTTCCTGTTTGAAGAGGGTGTTGTTTCTAGGCATAGTTATCAATTGTGGATTGTGGCACAGTAACTGGATCCAACAATTTTATAATGAGGTGACGACTGTTCTAATTTATTTTAATACATATAAATCAGTCTTAATAAACCAAGATGGCTAGTTGAGCCAGTAATCCGACATATGGCCTGTCCAAGCCCCACTTCAGATCTGACAAGCAAATAAACCAGAGCAACTAGTTAGACTCCATTTAGAATAGTTACCAGCCACCGCTACCCTGCCATTGATAAATATGATTTTAGAAAGATCTCTTGTTTCTTTTATTAGCATATTCATTGAGAAAAGTTACCAGGCACCACTCCCCTACCATTGATAACTATGATTATAGGAAGATCTTCTCTTATTTCTTTTATTAGCATAGATTTATTTTCTCTTATTTGTACAAATCATTTTTATTGTTTTACTATTAAGACAGATTCTTTCTATTAATTTAAGGGTAAAAACTAATAGATTTTTTTTTGGTGAAAAATTAAGGGAATATATGATAGCTGTGTCCTCGTACAAATAAAGTTCAGTAATTTTTCTCTTTTCAAGTTGCAGTCTTAATATTTTTCCATGACTACATGTCTGTTTCAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAGAGAATTCTCGTGGCAACCGATTTAGTAGGGAGGGGGATTGATATAGAGCGTGTCAATATAGTCATCAACTACGACATGCCTGATTCTGCTGATACCTATCTTCACAGGGTAAGTGCTTGATTGAACAAATTTTTATCAATCTAGTTTAAATATAGTTTTTGGCTTGTAGTATGGTATGCTTACTTGCTACCTCCTTGTAAAAGACCTCTGTCCTTTCTATCTTTATATGCTTATCGTCATCTGAACTGGTAGGTCGGTAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCTGGTGACTCTGAAGTTCTTAATCAGGTTAGTTAGGAACTTAATTTTTTTTTCTCTCATTTTCATTGAAACTGGAGGGGAATAGGACCCTTTTTGGCCATTGATGCTTTTATTAACCAATAGCTAAACTTTATTTTCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACAGTAAGATACTTTTTCGTAGTAGTTTATGGTTTTAATAGTTTGAGTAGATGCACAAAGTTTATTAGAACTGGAAGCATTGCATAAATGAAGTTTATCGCAACTGCAAGTGTGATGTTTGTATATAATAAAGTTGATCAGAACTGCAAATAGTGTTTGCATATAATAATACTTGAACATACATGAAATTGAAGCAGAAAATGTTGATTTCATTAATATTTTTCACAAGTGTGATGCTTTATAAAGGTTTTATCTTGGTCACAAATGTAACATCCTTTTGTTTTTACTGCAGTGCCTAATTGA
Protein sequence

>MS.gene034072.t1

MGELKDTEVYEEELIDYEEEDEKALDSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN