AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82680.t1 MTR_1g061970 74.065 428 102 3 6 430 69 490 0.0 643
MS.gene82680.t1 MTR_4g049910 68.523 413 115 3 19 430 51 449 0.0 561
MS.gene82680.t1 MTR_0427s0010 61.044 249 72 1 182 430 1 224 5.80e-100 298
MS.gene82680.t1 MTR_2g039960 32.500 400 237 12 23 418 41 411 3.14e-55 189
MS.gene82680.t1 MTR_8g018400 32.995 394 233 11 23 413 41 406 5.72e-55 188
MS.gene82680.t1 MTR_2g099620 33.418 395 230 12 23 413 25 390 9.55e-54 184
MS.gene82680.t1 MTR_4g125970 32.080 399 240 11 23 418 41 411 1.28e-53 184
MS.gene82680.t1 MTR_2g099620 33.418 395 230 12 23 413 41 406 1.31e-53 184
MS.gene82680.t1 MTR_4g125970 32.080 399 240 11 23 418 58 428 1.89e-53 184
MS.gene82680.t1 MTR_2g438110 31.078 399 244 10 18 413 29 399 2.27e-53 183
MS.gene82680.t1 MTR_7g076800 32.250 400 234 12 19 413 137 504 2.33e-50 178
MS.gene82680.t1 MTR_7g076830 32.250 400 234 12 19 413 139 506 2.54e-50 178
MS.gene82680.t1 MTR_7g076820 31.500 400 237 12 19 413 146 513 6.82e-49 174
MS.gene82680.t1 MTR_3g107420 30.075 399 244 12 24 415 48 418 3.17e-46 165
MS.gene82680.t1 MTR_1g012420 29.825 399 245 12 24 415 48 418 5.26e-46 164
MS.gene82680.t1 MTR_4g010565 30.075 399 244 12 24 415 125 495 1.25e-45 165
MS.gene82680.t1 MTR_2g100230 31.476 359 207 12 43 390 115 445 6.71e-34 132
MS.gene82680.t1 MTR_7g100820 29.974 387 239 11 31 413 141 499 8.88e-33 130
MS.gene82680.t1 MTR_6g082080 29.975 407 244 15 16 413 3 377 9.70e-33 129
MS.gene82680.t1 MTR_2g007000 30.709 381 226 15 23 392 504 857 1.63e-32 131
MS.gene82680.t1 MTR_7g056830 29.484 407 246 15 16 413 3 377 2.35e-32 127
MS.gene82680.t1 MTR_4g114120 30.548 383 200 15 34 383 150 499 2.68e-32 129
MS.gene82680.t1 MTR_8g018370 28.852 357 208 10 60 413 4 317 7.75e-32 124
MS.gene82680.t1 MTR_7g109720 27.632 380 234 13 23 390 232 582 2.03e-30 124
MS.gene82680.t1 MTR_5g027840 30.370 405 220 13 6 383 81 450 3.14e-30 122
MS.gene82680.t1 MTR_2g032630 27.436 390 220 13 23 390 496 844 4.45e-30 124
MS.gene82680.t1 MTR_3g083690 27.919 394 226 13 23 387 145 509 4.88e-30 122
MS.gene82680.t1 MTR_4g105100 29.670 364 215 12 39 390 217 551 8.00e-30 122
MS.gene82680.t1 MTR_1g054630 28.718 390 227 13 23 387 154 517 1.12e-29 122
MS.gene82680.t1 MTR_2g066050 29.750 400 241 16 13 402 43 412 1.89e-29 120
MS.gene82680.t1 MTR_1g095810 28.934 394 232 14 23 398 145 508 4.77e-29 120
MS.gene82680.t1 MTR_3g467550 28.382 377 228 15 23 383 117 467 8.05e-28 116
MS.gene82680.t1 MTR_1g026830 28.571 385 227 14 23 389 147 501 1.11e-27 115
MS.gene82680.t1 MTR_2g041140 27.586 406 244 14 20 409 138 509 1.13e-27 116
MS.gene82680.t1 MTR_1g046570 29.086 361 191 13 65 385 30 365 1.16e-27 114
MS.gene82680.t1 MTR_3g449250 27.049 366 230 11 63 418 127 465 1.70e-27 115
MS.gene82680.t1 MTR_3g449250 27.049 366 230 11 63 418 127 465 1.85e-27 115
MS.gene82680.t1 MTR_0915s0010 29.530 298 188 10 36 328 2 282 5.16e-27 109
MS.gene82680.t1 MTR_4g134170 27.990 393 221 14 29 390 293 654 1.03e-26 113
MS.gene82680.t1 MTR_3g049990 26.570 414 255 13 20 417 149 529 1.23e-26 113
MS.gene82680.t1 MTR_8g027780 29.340 409 225 19 24 403 107 480 1.97e-26 112
MS.gene82680.t1 MTR_3g467550 28.342 374 226 15 26 383 89 436 2.80e-26 111
MS.gene82680.t1 MTR_6g005550 27.778 378 216 16 43 401 184 523 2.95e-26 112
MS.gene82680.t1 MTR_8g027775 30.617 405 217 19 20 395 99 468 4.57e-26 110
MS.gene82680.t1 MTR_5g090120 27.100 369 226 14 63 418 118 456 7.05e-26 110
MS.gene82680.t1 MTR_6g056080 29.032 372 222 12 49 406 128 471 2.05e-25 109
MS.gene82680.t1 MTR_6g005320 27.735 393 220 15 29 390 255 614 3.83e-25 108
MS.gene82680.t1 MTR_4g079320 27.318 399 210 14 24 392 20 368 1.18e-24 107
MS.gene82680.t1 MTR_3g467550 28.571 343 217 14 23 349 117 447 2.74e-24 105
MS.gene82680.t1 MTR_8g027770 29.310 406 229 18 24 403 202 575 3.86e-24 105
MS.gene82680.t1 MTR_8g097000 28.606 416 237 20 15 403 280 662 1.84e-23 103
MS.gene82680.t1 MTR_1g083130 25.105 478 257 17 2 413 5 447 2.98e-23 102
MS.gene82680.t1 MTR_1g102410 27.763 371 210 12 49 388 69 412 8.69e-23 101
MS.gene82680.t1 MTR_4g068990 27.132 387 239 15 24 392 69 430 7.22e-21 95.9
MS.gene82680.t1 MTR_6g033070 25.238 420 261 16 13 413 128 513 1.73e-20 94.4
MS.gene82680.t1 MTR_4g105100 29.063 320 200 11 39 346 217 521 2.36e-20 93.6
MS.gene82680.t1 MTR_2g055850 27.604 384 240 14 18 389 86 443 6.12e-20 92.4
MS.gene82680.t1 MTR_6g039840 25.369 406 246 16 23 402 110 484 8.89e-20 92.4
MS.gene82680.t1 MTR_4g112340 28.142 366 221 17 39 389 112 450 2.50e-19 90.9
MS.gene82680.t1 MTR_5g092560 26.260 377 237 13 24 383 69 421 3.06e-19 90.9
MS.gene82680.t1 MTR_5g069330 26.453 344 231 14 23 358 3 332 6.13e-19 89.0
MS.gene82680.t1 MTR_5g069330 26.453 344 231 14 23 358 7 336 6.90e-19 88.6
MS.gene82680.t1 MTR_8g027780 30.199 351 196 17 24 345 107 437 7.27e-19 89.0
MS.gene82680.t1 MTR_3g107420 32.367 207 124 7 24 224 48 244 1.06e-18 86.7
MS.gene82680.t1 MTR_8g042690 24.427 393 226 14 24 383 9 363 1.30e-13 72.8
MS.gene82680.t1 MTR_3g118120 24.279 416 238 19 20 392 129 510 2.27e-13 72.4
MS.gene82680.t1 MTR_6g039840 25.460 326 198 12 94 402 11 308 1.25e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82680.t1 AT3G53110 60.096 416 153 7 19 430 88 494 1.74e-168 482
MS.gene82680.t1 AT1G72730 33.578 408 238 12 9 413 30 407 3.34e-58 196
MS.gene82680.t1 AT3G13920 32.487 394 235 11 23 413 30 395 2.16e-53 183
MS.gene82680.t1 AT3G13920 32.487 394 235 11 23 413 40 405 2.41e-53 184
MS.gene82680.t1 AT4G00660 33.415 407 222 14 18 413 127 495 2.90e-53 186
MS.gene82680.t1 AT4G00660 33.415 407 222 14 18 413 127 495 2.90e-53 186
MS.gene82680.t1 AT3G19760 30.964 394 241 10 23 413 36 401 1.84e-52 181
MS.gene82680.t1 AT3G61240 32.918 401 232 12 18 413 120 488 4.71e-52 182
MS.gene82680.t1 AT3G61240 32.918 401 232 12 18 413 120 488 4.71e-52 182
MS.gene82680.t1 AT3G13920 32.234 394 231 11 23 413 40 400 6.47e-52 180
MS.gene82680.t1 AT1G54270 32.234 394 236 11 23 413 40 405 8.40e-52 179
MS.gene82680.t1 AT2G45810 32.668 401 233 12 18 413 150 518 1.27e-51 182
MS.gene82680.t1 AT3G13920 32.718 379 224 11 23 398 40 390 1.52e-51 179
MS.gene82680.t1 AT3G13920 32.461 382 221 12 23 398 44 394 1.68e-51 179
MS.gene82680.t1 AT1G54270 31.980 394 232 11 23 413 40 400 2.17e-50 176
MS.gene82680.t1 AT1G51380 29.923 391 249 9 23 413 23 388 1.47e-48 170
MS.gene82680.t1 AT5G11170 29.323 399 247 12 24 415 48 418 2.65e-45 162
MS.gene82680.t1 AT5G11200 29.323 399 247 12 24 415 48 418 2.65e-45 162
MS.gene82680.t1 AT5G11170 28.771 358 225 9 64 415 2 335 6.58e-42 151
MS.gene82680.t1 AT5G11200 26.941 438 248 13 24 415 48 459 6.34e-39 146
MS.gene82680.t1 AT5G11200 26.711 453 248 13 24 415 48 477 2.44e-38 145
MS.gene82680.t1 AT5G63120 29.024 379 227 13 24 390 167 515 3.29e-34 135
MS.gene82680.t1 AT3G09720 29.504 383 241 11 33 413 152 507 4.20e-34 134
MS.gene82680.t1 AT3G09720 29.504 383 241 11 33 413 152 507 4.20e-34 134
MS.gene82680.t1 AT3G22310 28.058 417 250 14 26 427 120 501 5.77e-34 134
MS.gene82680.t1 AT3G22310 28.058 417 250 14 26 427 120 501 6.37e-34 134
MS.gene82680.t1 AT1G31970 30.194 361 202 10 43 383 134 464 2.69e-32 129
MS.gene82680.t1 AT3G01540 28.173 394 233 16 23 401 159 517 4.08e-32 129
MS.gene82680.t1 AT3G01540 28.173 394 233 16 23 401 159 517 4.08e-32 129
MS.gene82680.t1 AT3G01540 28.173 394 233 16 23 401 159 517 4.08e-32 129
MS.gene82680.t1 AT3G22330 26.699 412 260 13 26 426 108 488 4.26e-32 129
MS.gene82680.t1 AT3G01540 28.173 394 233 16 23 401 159 517 5.01e-32 129
MS.gene82680.t1 AT3G58510 29.008 393 220 12 23 387 152 513 8.36e-32 128
MS.gene82680.t1 AT3G58510 29.008 393 220 12 23 387 152 513 8.36e-32 128
MS.gene82680.t1 AT3G58510 29.008 393 220 12 23 387 152 513 8.36e-32 128
MS.gene82680.t1 AT5G14610 28.906 384 220 16 23 389 162 509 1.20e-31 127
MS.gene82680.t1 AT5G14610 28.906 384 220 16 23 389 162 509 1.37e-31 127
MS.gene82680.t1 AT5G14610 28.906 384 220 16 23 389 170 517 1.55e-31 127
MS.gene82680.t1 AT1G55150 29.444 360 213 11 43 390 119 449 2.05e-31 125
MS.gene82680.t1 AT3G06480 29.024 379 228 14 23 390 436 784 2.44e-31 127
MS.gene82680.t1 AT1G20920 29.412 374 226 14 28 390 197 543 2.63e-31 127
MS.gene82680.t1 AT1G55150 29.444 360 213 11 43 390 144 474 4.07e-31 125
MS.gene82680.t1 AT2G42520 29.787 376 204 13 42 387 178 523 5.24e-31 125
MS.gene82680.t1 AT2G42520 29.787 376 204 13 42 387 178 523 5.24e-31 125
MS.gene82680.t1 AT2G42520 29.787 376 204 13 42 387 178 523 5.24e-31 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT1G20920 29.679 374 225 15 28 390 535 881 1.98e-30 125
MS.gene82680.t1 AT3G58570 29.219 397 216 14 23 387 147 510 2.95e-30 124
MS.gene82680.t1 AT5G14610 28.846 364 207 15 43 389 249 577 1.23e-29 122
MS.gene82680.t1 AT5G14610 28.926 363 206 15 43 388 50 377 2.04e-29 120
MS.gene82680.t1 AT5G14610 28.926 363 206 15 43 388 50 377 2.04e-29 120
MS.gene82680.t1 AT5G60990 28.889 450 232 20 23 428 10 415 3.71e-29 119
MS.gene82680.t1 AT5G08620 28.605 430 246 17 4 403 57 455 3.78e-29 120
MS.gene82680.t1 AT1G16280 28.780 410 258 13 17 419 53 435 4.64e-29 119
MS.gene82680.t1 AT5G51280 27.873 409 217 16 23 398 147 510 1.26e-27 115
MS.gene82680.t1 AT4G33370 27.792 385 230 11 23 389 98 452 1.60e-27 115
MS.gene82680.t1 AT5G26742 26.683 401 242 13 33 419 28 390 4.58e-27 114
MS.gene82680.t1 AT5G26742 26.954 371 230 12 63 419 140 483 9.33e-27 113
MS.gene82680.t1 AT5G26742 26.954 371 230 12 63 419 140 483 9.34e-27 113
MS.gene82680.t1 AT4G16630 28.467 411 249 17 21 417 166 545 2.21e-26 112
MS.gene82680.t1 AT5G08610 28.256 407 240 15 20 403 380 757 9.73e-26 110
MS.gene82680.t1 AT5G62190 28.032 371 227 10 49 406 122 465 1.21e-25 110
MS.gene82680.t1 AT3G09620 28.877 374 199 15 28 390 403 720 2.05e-25 109
MS.gene82680.t1 AT3G09620 28.877 374 199 15 28 390 402 719 2.22e-25 109
MS.gene82680.t1 AT2G33730 26.817 399 230 14 23 390 314 681 3.81e-25 108
MS.gene82680.t1 AT5G14610 29.107 347 205 16 23 352 170 492 8.55e-25 107
MS.gene82680.t1 AT5G63120 28.704 324 203 12 24 335 167 474 1.66e-24 105
MS.gene82680.t1 AT5G63120 28.704 324 203 12 24 335 167 474 1.66e-24 105
MS.gene82680.t1 AT5G63120 28.704 324 203 12 24 335 167 474 1.66e-24 105
MS.gene82680.t1 AT5G63120 28.704 324 203 12 24 335 167 474 1.68e-24 105
MS.gene82680.t1 AT2G47330 25.916 382 238 12 23 390 229 579 2.23e-24 106
MS.gene82680.t1 AT1G28180 27.907 344 207 12 62 392 10 325 6.00e-24 102
MS.gene82680.t1 AT1G77030 26.854 391 222 14 24 392 30 378 7.44e-24 105
MS.gene82680.t1 AT3G02065 26.829 410 248 14 23 414 111 486 3.23e-23 102
MS.gene82680.t1 AT3G02065 26.829 410 248 14 23 414 111 486 3.23e-23 102
MS.gene82680.t1 AT3G06480 28.529 333 211 13 23 344 436 752 3.49e-23 102
MS.gene82680.t1 AT5G63630 27.628 409 232 17 24 403 56 429 1.44e-22 100
MS.gene82680.t1 AT3G18600 28.533 368 232 11 23 383 90 433 1.87e-22 100
MS.gene82680.t1 AT5G54910 26.854 391 245 17 24 402 73 434 2.22e-22 100
MS.gene82680.t1 AT5G63630 27.628 409 232 17 24 403 250 623 5.43e-22 99.4
MS.gene82680.t1 AT1G51380 26.616 263 183 6 23 285 23 275 1.30e-21 94.7
MS.gene82680.t1 AT5G65900 28.117 377 233 16 18 383 150 499 4.52e-21 96.3
MS.gene82680.t1 AT3G02065 26.216 370 224 12 63 414 11 349 1.15e-19 90.5
MS.gene82680.t1 AT1G63250 25.503 447 263 17 18 427 324 737 3.41e-18 87.8
MS.gene82680.t1 AT4G09730 23.869 398 260 15 24 402 114 487 1.25e-17 85.9
MS.gene82680.t1 AT2G07750 25.450 444 269 16 18 428 371 785 1.44e-17 85.9
MS.gene82680.t1 AT1G51380 26.056 284 190 8 23 294 23 298 1.12e-16 80.9
MS.gene82680.t1 AT1G51380 26.056 284 190 8 23 294 23 298 1.71e-16 80.1
MS.gene82680.t1 AT4G34910 25.120 418 216 14 23 378 47 429 2.38e-16 81.6
MS.gene82680.t1 AT3G06980 24.485 437 253 19 20 413 372 774 1.00e-13 73.9
MS.gene82680.t1 AT1G12770 28.934 197 112 9 20 198 108 294 1.34e-11 67.0
MS.gene82680.t1 AT1G12770 28.934 197 112 9 20 198 108 294 1.34e-11 67.0

Find 101 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGATTGAAAACGATTT+TGG 0.149747 3.1:+37512038 MS.gene82680:CDS
TAACATCTTTGCACTATTTA+TGG 0.162635 3.1:-37510972 None:intergenic
TTGGATTGTTTAGGTTAATT+TGG 0.187218 3.1:+37511231 MS.gene82680:intron
TAGTCTTCAACACTTCTTTC+TGG 0.220635 3.1:-37512220 None:intergenic
CTTTATATCCCCTATCAAAA+AGG 0.225929 3.1:-37511003 None:intergenic
CACTAGAGAGTTAGCTATTC+AGG 0.252333 3.1:+37509486 MS.gene82680:CDS
AAAACCACTTGTTTCGTTCT+TGG 0.260206 3.1:+37509406 MS.gene82680:CDS
ATCATGGCTCAAATCCTTAT+TGG 0.293642 3.1:+37510024 MS.gene82680:CDS
CATCCCATTCACCACATATC+AGG 0.298287 3.1:-37512004 None:intergenic
AACAAACCTGACAGATTAAA+TGG 0.298376 3.1:-37510483 None:intergenic
ATATTCAAGAACATCTATTA+TGG 0.305852 3.1:-37511032 None:intergenic
AATAACTATATACTTGAAAT+AGG 0.320511 3.1:+37510914 MS.gene82680:CDS
AGACTATAAAGTTGCTCTTA+AGG 0.339137 3.1:+37512237 MS.gene82680:CDS
GTTGGTAGGGCTGGACGATT+TGG 0.345626 3.1:+37511343 MS.gene82680:CDS
GCCACTATTAAGACTTTGAT+TGG 0.349788 3.1:+37510054 MS.gene82680:CDS
CAGAATCATCGGTAAGCTTA+AGG 0.357256 3.1:-37509335 None:intergenic
CCTCTTGAATGTTGAGCAAC+GGG 0.357348 3.1:-37509103 None:intergenic
GCGCAAGCACCCATGGGTTC+AGG 0.379223 3.1:+37509382 MS.gene82680:CDS
CATGCTGTTCTCCGTAAGAT+TGG 0.387544 3.1:+37509928 MS.gene82680:CDS
GAGGAACTCCGGTACCAAAA+AGG 0.396649 3.1:+37509995 MS.gene82680:CDS
AATCTTATCACAAAGATTGT+TGG 0.408507 3.1:+37510785 MS.gene82680:CDS
GTCATGAACCTGAGCTTGAT+TGG 0.422834 3.1:+37511302 MS.gene82680:CDS
ATTGGGAGGTGTATCTGTAC+AGG 0.424508 3.1:+37511320 MS.gene82680:CDS
TAGTGGCAGGAGTACCAATA+AGG 0.428630 3.1:-37510038 None:intergenic
ACATTACCATTTAATCTGTC+AGG 0.436639 3.1:+37510477 MS.gene82680:CDS
CCGTGGCTTTGATAATCAAC+AGG 0.443501 3.1:+37511129 MS.gene82680:CDS
AAAGTTGCTCTTAAGGAAGC+TGG 0.446114 3.1:+37512244 MS.gene82680:CDS
TGACCATGGGTGTACTCGGC+AGG 0.456294 3.1:-37511283 None:intergenic
TGTATCTGTACAGGGTTGGT+AGG 0.459595 3.1:+37511329 MS.gene82680:CDS
AGTACATTACCTCTGTTACA+TGG 0.461726 3.1:-37512064 None:intergenic
CGTAAGATTGGGAAGTTCAC+GGG 0.463544 3.1:+37509940 MS.gene82680:CDS
ATTATCGACGAGTTTAAAGA+TGG 0.463765 3.1:+37511070 MS.gene82680:CDS
TCAATCTTAGAGAGTTCATC+AGG 0.467172 3.1:-37510884 None:intergenic
ACCAATCAAAGTCTTAATAG+TGG 0.468929 3.1:-37510055 None:intergenic
CTGTACAGGGTTGGTAGGGC+TGG 0.470500 3.1:+37511334 MS.gene82680:CDS
TAGAGTCCCTTCAGAAGCTT+CGG 0.483278 3.1:-37509274 None:intergenic
CTGAATAGCTAACTCTCTAG+TGG 0.485079 3.1:-37509485 None:intergenic
ATGCTGTTCTCCGTAAGATT+GGG 0.492209 3.1:+37509929 MS.gene82680:CDS
ATCAAAGTCTTAATAGTGGC+AGG 0.492383 3.1:-37510051 None:intergenic
CCGTAAGATTGGGAAGTTCA+CGG 0.493789 3.1:+37509939 MS.gene82680:CDS
TTTGATTGCGCAAGCACCCA+TGG 0.495123 3.1:+37509375 MS.gene82680:CDS
ATAAGGATTTGAGCCATGAT+AGG 0.498457 3.1:-37510021 None:intergenic
CCGTGAACTTCCCAATCTTA+CGG 0.501266 3.1:-37509939 None:intergenic
GTATCTGTACAGGGTTGGTA+GGG 0.502935 3.1:+37511330 MS.gene82680:CDS
GCTTGAGGAGCATGCAAGGT+TGG 0.505733 3.1:-37509448 None:intergenic
TGAATAGCTAACTCTCTAGT+GGG 0.508229 3.1:-37509484 None:intergenic
TACTCGGCAGGGAACTTTAG+TGG 0.508471 3.1:-37511271 None:intergenic
TACACCTCCCAATCAAGCTC+AGG 0.520014 3.1:-37511310 None:intergenic
TAACCTGATATGTGGTGAAT+GGG 0.520406 3.1:+37512001 MS.gene82680:CDS
GGCTGGACGATTTGGACGCA+AGG 0.521422 3.1:+37511351 MS.gene82680:CDS
TCTCTCGCCGAAGCTTCTGA+AGG 0.527899 3.1:+37509267 MS.gene82680:CDS
TTCATGACCATGGGTGTACT+CGG 0.530008 3.1:-37511287 None:intergenic
AGAGACAAGTCTTCGAAGGT+TGG 0.532924 3.1:-37509247 None:intergenic
GAGCAACGGGGTTTCTGCGG+CGG 0.536633 3.1:-37509090 None:intergenic
ACTTGAAATAGGAGAGAAAG+TGG 0.538252 3.1:+37510925 MS.gene82680:CDS
TATCACAAAGATTGTTGGCA+AGG 0.540703 3.1:+37510790 MS.gene82680:CDS
TTAACCTGATATGTGGTGAA+TGG 0.545463 3.1:+37512000 MS.gene82680:CDS
GATTCTGAATCCTCCACATA+GGG 0.545521 3.1:+37509351 MS.gene82680:CDS
ACCTCTTGAATGTTGAGCAA+CGG 0.546825 3.1:-37509104 None:intergenic
TCATGAACCTGAGCTTGATT+GGG 0.547196 3.1:+37511303 MS.gene82680:CDS
TGATTCTCTGTGGATAATGA+AGG 0.551913 3.1:+37510447 MS.gene82680:CDS
TCGTCTGATGTTCTTGCCCG+TGG 0.555694 3.1:+37511112 MS.gene82680:CDS
GTACATTACCTCTGTTACAT+GGG 0.556403 3.1:-37512063 None:intergenic
GTTGAGCAACGGGGTTTCTG+CGG 0.561285 3.1:-37509093 None:intergenic
TGATTCTGAATCCTCCACAT+AGG 0.562100 3.1:+37509350 MS.gene82680:CDS
CAAGCTCAGGTTCATGACCA+TGG 0.563056 3.1:-37511297 None:intergenic
GCTTCTGAAGGGACTCTATG+TGG 0.569621 3.1:+37509279 MS.gene82680:CDS
TCCTTTCAGAGGAGGAACTC+CGG 0.570347 3.1:+37509984 MS.gene82680:CDS
GAATGTGCAGTTCCTTTCAG+AGG 0.574810 3.1:+37509973 MS.gene82680:CDS
TTGATTGCGCAAGCACCCAT+GGG 0.576901 3.1:+37509376 MS.gene82680:CDS
TGTGGAGGATTCAGAATCAT+CGG 0.579232 3.1:-37509346 None:intergenic
CCCGTTGCTCAACATTCAAG+AGG 0.579244 3.1:+37509103 MS.gene82680:CDS
AAGCTCAGGTTCATGACCAT+GGG 0.580295 3.1:-37511296 None:intergenic
GAGGTGTATCTGTACAGGGT+TGG 0.581990 3.1:+37511325 MS.gene82680:CDS
ACCGGAGTTCCTCCTCTGAA+AGG 0.583335 3.1:-37509985 None:intergenic
CTCTCGCCGAAGCTTCTGAA+GGG 0.584846 3.1:+37509268 MS.gene82680:CDS
TTGAAATAGGAGAGAAAGTG+GGG 0.598223 3.1:+37510927 MS.gene82680:CDS
GATAGCTTGAGGAGCATGCA+AGG 0.599547 3.1:-37509452 None:intergenic
CCTGTTGATTATCAAAGCCA+CGG 0.601464 3.1:-37511129 None:intergenic
TTCCCTGCCGAGTACACCCA+TGG 0.606866 3.1:+37511280 MS.gene82680:CDS
GACCATGGGTGTACTCGGCA+GGG 0.615482 3.1:-37511282 None:intergenic
CTTGAAATAGGAGAGAAAGT+GGG 0.618156 3.1:+37510926 MS.gene82680:CDS
CGAGAGAGACAAGTCTTCGA+AGG 0.621042 3.1:-37509251 None:intergenic
GGGCAAATGCAGATAGCTTG+AGG 0.622258 3.1:-37509463 None:intergenic
CAATCTTACGGAGAACAGCA+TGG 0.622572 3.1:-37509927 None:intergenic
TGTGCAGTTCCTTTCAGAGG+AGG 0.623856 3.1:+37509976 MS.gene82680:CDS
CTGTTGATTATCAAAGCCAC+GGG 0.626209 3.1:-37511128 None:intergenic
AGGATTTGAGCCATGATAGG+TGG 0.634858 3.1:-37510018 None:intergenic
TTGGGAGGTGTATCTGTACA+GGG 0.638291 3.1:+37511321 MS.gene82680:CDS
TGAACCTGAGCTTGATTGGG+AGG 0.642294 3.1:+37511306 MS.gene82680:CDS
TGCGCAATCAAATCCCTATG+TGG 0.644660 3.1:-37509364 None:intergenic
GTAAGATTGGGAAGTTCACG+GGG 0.647484 3.1:+37509941 MS.gene82680:CDS
GCTGTATTTAACCTGATATG+TGG 0.649135 3.1:+37511993 MS.gene82680:CDS
GCTGGACGATTTGGACGCAA+GGG 0.650502 3.1:+37511352 MS.gene82680:CDS
AATTCTGCTCCAGGTTACGT+CGG 0.652366 3.1:+37509222 MS.gene82680:intron
CATACCAAGAACGAAACAAG+TGG 0.657200 3.1:-37509410 None:intergenic
TGCTGATCAACTGCTTGCTG+AGG 0.669303 3.1:+37510125 MS.gene82680:CDS
AATTTCAAGATGATTCTCTG+TGG 0.677398 3.1:+37510437 MS.gene82680:CDS
GCAATCAAATCCCTATGTGG+AGG 0.677952 3.1:-37509361 None:intergenic
CTCTTGAATGTTGAGCAACG+GGG 0.678380 3.1:-37509102 None:intergenic
GAATAGCTAACTCTCTAGTG+GGG 0.713974 3.1:-37509483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTTAGTATTATATAAT+AGG - chr3.1:37510615-37510634 None:intergenic 10.0%
!! AATAACTATATACTTGAAAT+AGG + chr3.1:37510914-37510933 MS.gene82680:CDS 15.0%
!!! TGATTTTATCAAATTATCAA+CGG - chr3.1:37509678-37509697 None:intergenic 15.0%
!! AAAATACATGTTTCTTGTAT+TGG - chr3.1:37510545-37510564 None:intergenic 20.0%
!! ATATTCAAGAACATCTATTA+TGG - chr3.1:37511035-37511054 None:intergenic 20.0%
!! ATTGATTGAAAAAAAGTTGT+TGG + chr3.1:37511588-37511607 MS.gene82680:intron 20.0%
!! GCTAATAAAAAACAAAGAAA+AGG - chr3.1:37510352-37510371 None:intergenic 20.0%
!! TGTGTAAAAATTAAAAGACT+TGG - chr3.1:37511950-37511969 None:intergenic 20.0%
!!! ATTTATGATATTTTCAGTAG+TGG + chr3.1:37511912-37511931 MS.gene82680:intron 20.0%
!!! ATTTTTACACATGTTTTCAT+TGG + chr3.1:37511959-37511978 MS.gene82680:intron 20.0%
!!! TTCTTTGTTTTTTATTAGCA+GGG + chr3.1:37510353-37510372 MS.gene82680:intron 20.0%
!!! TTTCTTTGTTTTTTATTAGC+AGG + chr3.1:37510352-37510371 MS.gene82680:intron 20.0%
!!! TTTTTTCAATCAATGAAACA+TGG - chr3.1:37511582-37511601 None:intergenic 20.0%
! AAATTAAAAGACTTGGCATT+TGG - chr3.1:37511943-37511962 None:intergenic 25.0%
! AACAAATATATTAAACACGG+GGG - chr3.1:37510585-37510604 None:intergenic 25.0%
! AAGAAAACTGAAAAAAGCAA+CGG - chr3.1:37510685-37510704 None:intergenic 25.0%
! AAGTATTTCTTATAAAGGCT+TGG + chr3.1:37511792-37511811 MS.gene82680:intron 25.0%
! AATCTTATCACAAAGATTGT+TGG + chr3.1:37510785-37510804 MS.gene82680:CDS 25.0%
! ACAAAATGATTCATGTAAGT+TGG - chr3.1:37512177-37512196 None:intergenic 25.0%
! CAAAATGATTCATGTAAGTT+GGG - chr3.1:37512176-37512195 None:intergenic 25.0%
! CAACAAAATAAAAATCACAC+AGG - chr3.1:37509892-37509911 None:intergenic 25.0%
! CAACAAATATATTAAACACG+GGG - chr3.1:37510586-37510605 None:intergenic 25.0%
! CCAACAAATATATTAAACAC+GGG - chr3.1:37510587-37510606 None:intergenic 25.0%
! GCCAACAAATATATTAAACA+CGG - chr3.1:37510588-37510607 None:intergenic 25.0%
! GGCTTAAGTATTTCTTATAA+AGG + chr3.1:37511787-37511806 MS.gene82680:intron 25.0%
! TAACATCTTTGCACTATTTA+TGG - chr3.1:37510975-37510994 None:intergenic 25.0%
! TGTGTAGTTAACTGTTTAAT+TGG + chr3.1:37511513-37511532 MS.gene82680:intron 25.0%
! TTGTTTATCCATATAAAGCA+CGG - chr3.1:37509599-37509618 None:intergenic 25.0%
! TTGTTTATGGAATTCGAAAA+GGG - chr3.1:37509741-37509760 None:intergenic 25.0%
! TTTAGTGCAATTATATGTGT+CGG + chr3.1:37509803-37509822 MS.gene82680:intron 25.0%
! TTTATATCCCCTATCAAAAA+GGG - chr3.1:37511005-37511024 None:intergenic 25.0%
!! AACCATACATCTTTTATTGT+TGG + chr3.1:37510205-37510224 MS.gene82680:intron 25.0%
!! AGTCGATCAAAATTTTCTTA+AGG - chr3.1:37510713-37510732 None:intergenic 25.0%
!! CTCAAAGAAACATTCTTTTT+GGG + chr3.1:37511555-37511574 MS.gene82680:intron 25.0%
!! GTCGATCAAAATTTTCTTAA+GGG - chr3.1:37510712-37510731 None:intergenic 25.0%
!! TGAAGATTTTATATTCTGCA+TGG - chr3.1:37512110-37512129 None:intergenic 25.0%
!! TTCATAGGTTAAGTTGTTTA+TGG - chr3.1:37509754-37509773 None:intergenic 25.0%
!! TTGGATTGTTTAGGTTAATT+TGG + chr3.1:37511231-37511250 MS.gene82680:intron 25.0%
!! TTTGTTATAATTGACACCTA+TGG + chr3.1:37509621-37509640 MS.gene82680:intron 25.0%
!!! GTCTGTATTTTAACATTTTC+TGG + chr3.1:37511859-37511878 MS.gene82680:intron 25.0%
!!! TCATTTTGTTTATGTCATTG+TGG + chr3.1:37512188-37512207 MS.gene82680:intron 25.0%
AACAAACCTGACAGATTAAA+TGG - chr3.1:37510486-37510505 None:intergenic 30.0%
AACCTAAACAATCCAATAGA+AGG - chr3.1:37511227-37511246 None:intergenic 30.0%
AATTTCAAGATGATTCTCTG+TGG + chr3.1:37510437-37510456 MS.gene82680:CDS 30.0%
ACATTACCATTTAATCTGTC+AGG + chr3.1:37510477-37510496 MS.gene82680:CDS 30.0%
ACCAATCAAAGTCTTAATAG+TGG - chr3.1:37510058-37510077 None:intergenic 30.0%
AGACTATAAAGTTGCTCTTA+AGG + chr3.1:37512237-37512256 MS.gene82680:CDS 30.0%
ATCCTTCTATTGGATTGTTT+AGG + chr3.1:37511222-37511241 MS.gene82680:intron 30.0%
ATTATCGACGAGTTTAAAGA+TGG + chr3.1:37511070-37511089 MS.gene82680:CDS 30.0%
CAAAATACTAAATGCTATCC+TGG - chr3.1:37511835-37511854 None:intergenic 30.0%
CCAAAAAGAATGTTTCTTTG+AGG - chr3.1:37511557-37511576 None:intergenic 30.0%
CCCGTGTTTAATATATTTGT+TGG + chr3.1:37510584-37510603 MS.gene82680:intron 30.0%
CTCCAACAATAAAAGATGTA+TGG - chr3.1:37510210-37510229 None:intergenic 30.0%
CTTGAAAGTGAAACTACAAA+TGG - chr3.1:37511886-37511905 None:intergenic 30.0%
CTTTATATCCCCTATCAAAA+AGG - chr3.1:37511006-37511025 None:intergenic 30.0%
GTCAGTGTAATTATATGTGT+CGG + chr3.1:37509703-37509722 MS.gene82680:intron 30.0%
GTTGTTTATGGAATTCGAAA+AGG - chr3.1:37509742-37509761 None:intergenic 30.0%
TAAGCCATATGTCTACAAAT+GGG - chr3.1:37511773-37511792 None:intergenic 30.0%
TACATGTTTCTTGTATTGGA+TGG - chr3.1:37510541-37510560 None:intergenic 30.0%
TAGCTATTGAGTAATCGAAT+CGG - chr3.1:37510246-37510265 None:intergenic 30.0%
TTAAGCCATATGTCTACAAA+TGG - chr3.1:37511774-37511793 None:intergenic 30.0%
TTATCAAATTATCAACGGTG+TGG - chr3.1:37509673-37509692 None:intergenic 30.0%
TTATTCATGCATCCTTCTAT+TGG + chr3.1:37511212-37511231 MS.gene82680:intron 30.0%
TTTCAAGCTTCTTGTATATG+TGG + chr3.1:37511642-37511661 MS.gene82680:intron 30.0%
! AGCATTGAGTAAGTTTAGTT+TGG - chr3.1:37510296-37510315 None:intergenic 30.0%
! CCTCAAAGAAACATTCTTTT+TGG + chr3.1:37511554-37511573 MS.gene82680:intron 30.0%
! TATGATATTTTCAGTAGTGG+TGG + chr3.1:37511915-37511934 MS.gene82680:intron 30.0%
! TCGAAGATTGAAAACGATTT+TGG + chr3.1:37512038-37512057 MS.gene82680:CDS 30.0%
! TGAACTTTTTGTGAAGAAAG+AGG + chr3.1:37510820-37510839 MS.gene82680:CDS 30.0%
!! AGTTTCTAAAACTGTTTGCT+TGG + chr3.1:37511377-37511396 MS.gene82680:intron 30.0%
!! GAGTAAGTTTAGTTTGGAAT+GGG - chr3.1:37510290-37510309 None:intergenic 30.0%
!! TGAGTAAGTTTAGTTTGGAA+TGG - chr3.1:37510291-37510310 None:intergenic 30.0%
!!! GTTTTTTATTAGCAGGGTTT+TGG + chr3.1:37510359-37510378 MS.gene82680:intron 30.0%
AAAACCACTTGTTTCGTTCT+TGG + chr3.1:37509406-37509425 MS.gene82680:CDS 35.0%
ACAACTTAACCTATGAACCA+TGG + chr3.1:37509757-37509776 MS.gene82680:intron 35.0%
ACTTGAAATAGGAGAGAAAG+TGG + chr3.1:37510925-37510944 MS.gene82680:CDS 35.0%
AGACTTTGTAGAATGTGCAT+AGG + chr3.1:37512138-37512157 MS.gene82680:intron 35.0%
AGCTATTGAGTAATCGAATC+GGG - chr3.1:37510245-37510264 None:intergenic 35.0%
AGCTTCTTGTATATGTGGAT+AGG + chr3.1:37511647-37511666 MS.gene82680:intron 35.0%
AGTACATTACCTCTGTTACA+TGG - chr3.1:37512067-37512086 None:intergenic 35.0%
ATAAGGATTTGAGCCATGAT+AGG - chr3.1:37510024-37510043 None:intergenic 35.0%
ATCAAAGTCTTAATAGTGGC+AGG - chr3.1:37510054-37510073 None:intergenic 35.0%
ATCATGGCTCAAATCCTTAT+TGG + chr3.1:37510024-37510043 MS.gene82680:CDS 35.0%
CTTGAAATAGGAGAGAAAGT+GGG + chr3.1:37510926-37510945 MS.gene82680:CDS 35.0%
GACTTTGTAGAATGTGCATA+GGG + chr3.1:37512139-37512158 MS.gene82680:intron 35.0%
GCCACTATTAAGACTTTGAT+TGG + chr3.1:37510054-37510073 MS.gene82680:CDS 35.0%
GCTGTATTTAACCTGATATG+TGG + chr3.1:37511993-37512012 MS.gene82680:CDS 35.0%
GCTTCTTGTATATGTGGATA+GGG + chr3.1:37511648-37511667 MS.gene82680:intron 35.0%
GTACATTACCTCTGTTACAT+GGG - chr3.1:37512066-37512085 None:intergenic 35.0%
GTTTATGTCATTGTGGATGT+AGG + chr3.1:37512195-37512214 MS.gene82680:intron 35.0%
TAACCTGATATGTGGTGAAT+GGG + chr3.1:37512001-37512020 MS.gene82680:CDS 35.0%
TAAGCCTTAGAAACTAGACT+AGG - chr3.1:37511732-37511751 None:intergenic 35.0%
TAGAATGTGCATAGGGTTAT+GGG + chr3.1:37512146-37512165 MS.gene82680:intron 35.0%
TAGTCTTCAACACTTCTTTC+TGG - chr3.1:37512223-37512242 None:intergenic 35.0%
TATCACAAAGATTGTTGGCA+AGG + chr3.1:37510790-37510809 MS.gene82680:CDS 35.0%
TCAATCTTAGAGAGTTCATC+AGG - chr3.1:37510887-37510906 None:intergenic 35.0%
TGAATAGCTAACTCTCTAGT+GGG - chr3.1:37509487-37509506 None:intergenic 35.0%
TGATTCTCTGTGGATAATGA+AGG + chr3.1:37510447-37510466 MS.gene82680:CDS 35.0%
TGTAGTAAACTGGTAGCTTA+GGG + chr3.1:37511489-37511508 MS.gene82680:intron 35.0%
TGTTTCTTGTATTGGATGGA+TGG - chr3.1:37510537-37510556 None:intergenic 35.0%
TTAACCTGATATGTGGTGAA+TGG + chr3.1:37512000-37512019 MS.gene82680:CDS 35.0%
TTGAAATAGGAGAGAAAGTG+GGG + chr3.1:37510927-37510946 MS.gene82680:CDS 35.0%
! ACACAAAGCCCTTTTTGATA+GGG + chr3.1:37510994-37511013 MS.gene82680:CDS 35.0%
! ATGTTTTCATTGGACTGAAC+AGG + chr3.1:37511969-37511988 MS.gene82680:intron 35.0%
! CTTAAGGCTTGTATTTTGCT+AGG - chr3.1:37509322-37509341 None:intergenic 35.0%
! TACACAAAGCCCTTTTTGAT+AGG + chr3.1:37510993-37511012 MS.gene82680:CDS 35.0%
! TCTGCAGGTTCTTATGTTTT+CGG + chr3.1:37510739-37510758 MS.gene82680:intron 35.0%
! TGTTTTCATTGGACTGAACA+GGG + chr3.1:37511970-37511989 MS.gene82680:intron 35.0%
AAAGTTGCTCTTAAGGAAGC+TGG + chr3.1:37512244-37512263 MS.gene82680:CDS 40.0%
AAGAGTCCAAGCACATGTAA+AGG - chr3.1:37511183-37511202 None:intergenic 40.0%
ACCTCCCATTTGTAGACATA+TGG + chr3.1:37511766-37511785 MS.gene82680:intron 40.0%
ACCTCTTGAATGTTGAGCAA+CGG - chr3.1:37509107-37509126 None:intergenic 40.0%
AGAAACTAGACTAGGTGGTT+TGG - chr3.1:37511724-37511743 None:intergenic 40.0%
ATGCTGTTCTCCGTAAGATT+GGG + chr3.1:37509929-37509948 MS.gene82680:CDS 40.0%
CACTAGAGAGTTAGCTATTC+AGG + chr3.1:37509486-37509505 MS.gene82680:CDS 40.0%
CAGAATCATCGGTAAGCTTA+AGG - chr3.1:37509338-37509357 None:intergenic 40.0%
CAGTTTACTACAGGACACTA+AGG - chr3.1:37511481-37511500 None:intergenic 40.0%
CATACCAAGAACGAAACAAG+TGG - chr3.1:37509413-37509432 None:intergenic 40.0%
CTAAATGCTATCCTGGATCA+AGG - chr3.1:37511828-37511847 None:intergenic 40.0%
CTAAGCTACCAGTTTACTAC+AGG - chr3.1:37511490-37511509 None:intergenic 40.0%
CTGAATAGCTAACTCTCTAG+TGG - chr3.1:37509488-37509507 None:intergenic 40.0%
CTGTAGTAAACTGGTAGCTT+AGG + chr3.1:37511488-37511507 MS.gene82680:intron 40.0%
CTTAGTGTCCTGTAGTAAAC+TGG + chr3.1:37511479-37511498 MS.gene82680:intron 40.0%
CTTGTATTGGATGGATGGTA+TGG - chr3.1:37510532-37510551 None:intergenic 40.0%
GAAACTAGACTAGGTGGTTT+GGG - chr3.1:37511723-37511742 None:intergenic 40.0%
GAATAGCTAACTCTCTAGTG+GGG - chr3.1:37509486-37509505 None:intergenic 40.0%
GATTCTGAATCCTCCACATA+GGG + chr3.1:37509351-37509370 MS.gene82680:CDS 40.0%
GCTATTGAGTAATCGAATCG+GGG - chr3.1:37510244-37510263 None:intergenic 40.0%
GTAGAATGTGCATAGGGTTA+TGG + chr3.1:37512145-37512164 MS.gene82680:intron 40.0%
TATGTCTACAAATGGGAGGT+TGG - chr3.1:37511766-37511785 None:intergenic 40.0%
TCATGAACCTGAGCTTGATT+GGG + chr3.1:37511303-37511322 MS.gene82680:CDS 40.0%
TCTCTCTCTCTCTCAATTCT+TGG + chr3.1:37509175-37509194 MS.gene82680:intron 40.0%
TGATTCTGAATCCTCCACAT+AGG + chr3.1:37509350-37509369 MS.gene82680:CDS 40.0%
TGCAGCAAGACACAGTTATA+GGG - chr3.1:37510412-37510431 None:intergenic 40.0%
TGTCAATGTCCATGGTTCAT+AGG - chr3.1:37509769-37509788 None:intergenic 40.0%
TGTGCAGTGAATTGTTTGCT+TGG + chr3.1:37511431-37511450 MS.gene82680:intron 40.0%
TGTGGAGGATTCAGAATCAT+CGG - chr3.1:37509349-37509368 None:intergenic 40.0%
! ACCACCTAGTCTAGTTTCTA+AGG + chr3.1:37511725-37511744 MS.gene82680:intron 40.0%
! CACAAAGCCCTTTTTGATAG+GGG + chr3.1:37510995-37511014 MS.gene82680:CDS 40.0%
! CCTGTTGATTATCAAAGCCA+CGG - chr3.1:37511132-37511151 None:intergenic 40.0%
! CTGTTGATTATCAAAGCCAC+GGG - chr3.1:37511131-37511150 None:intergenic 40.0%
! GTCTTTTTGAATTCTGCTCC+AGG + chr3.1:37509213-37509232 MS.gene82680:intron 40.0%
! GTTTTCATTGGACTGAACAG+GGG + chr3.1:37511971-37511990 MS.gene82680:intron 40.0%
AACACGGGGGAAAGACTATT+TGG - chr3.1:37510572-37510591 None:intergenic 45.0%
AAGCTCAGGTTCATGACCAT+GGG - chr3.1:37511299-37511318 None:intergenic 45.0%
AATTCTGCTCCAGGTTACGT+CGG + chr3.1:37509222-37509241 MS.gene82680:intron 45.0%
ACCAAAAAGGCCACCTATCA+TGG + chr3.1:37510008-37510027 MS.gene82680:CDS 45.0%
AGAGACAAGTCTTCGAAGGT+TGG - chr3.1:37509250-37509269 None:intergenic 45.0%
AGGATTTGAGCCATGATAGG+TGG - chr3.1:37510021-37510040 None:intergenic 45.0%
CAATCTTACGGAGAACAGCA+TGG - chr3.1:37509930-37509949 None:intergenic 45.0%
CATCCCATTCACCACATATC+AGG - chr3.1:37512007-37512026 None:intergenic 45.0%
CATGCTGTTCTCCGTAAGAT+TGG + chr3.1:37509928-37509947 MS.gene82680:CDS 45.0%
CATGTAAAGGTGAGACAGAG+AGG - chr3.1:37511170-37511189 None:intergenic 45.0%
CCGTAAGATTGGGAAGTTCA+CGG + chr3.1:37509939-37509958 MS.gene82680:CDS 45.0%
CCGTGAACTTCCCAATCTTA+CGG - chr3.1:37509942-37509961 None:intergenic 45.0%
CCTCTTGAATGTTGAGCAAC+GGG - chr3.1:37509106-37509125 None:intergenic 45.0%
CGTAAGATTGGGAAGTTCAC+GGG + chr3.1:37509940-37509959 MS.gene82680:CDS 45.0%
CTATAACTGTGTCTTGCTGC+AGG + chr3.1:37510411-37510430 MS.gene82680:intron 45.0%
CTCTTGAATGTTGAGCAACG+GGG - chr3.1:37509105-37509124 None:intergenic 45.0%
CTGCAGCAAGACACAGTTAT+AGG - chr3.1:37510413-37510432 None:intergenic 45.0%
GAATGTGCAGTTCCTTTCAG+AGG + chr3.1:37509973-37509992 MS.gene82680:CDS 45.0%
GACAATCTTCACCTTGATCC+AGG + chr3.1:37511814-37511833 MS.gene82680:intron 45.0%
GATTTGCGTGTCAATGTCCA+TGG - chr3.1:37509777-37509796 None:intergenic 45.0%
GCAATCAAATCCCTATGTGG+AGG - chr3.1:37509364-37509383 None:intergenic 45.0%
GCCATATGTCTACAAATGGG+AGG - chr3.1:37511770-37511789 None:intergenic 45.0%
GCCTTAGAAACTAGACTAGG+TGG - chr3.1:37511729-37511748 None:intergenic 45.0%
GTAAGATTGGGAAGTTCACG+GGG + chr3.1:37509941-37509960 MS.gene82680:CDS 45.0%
GTCATGAACCTGAGCTTGAT+TGG + chr3.1:37511302-37511321 MS.gene82680:CDS 45.0%
GTCTCACCTTTACATGTGCT+TGG + chr3.1:37511174-37511193 MS.gene82680:intron 45.0%
TAGAGTCCCTTCAGAAGCTT+CGG - chr3.1:37509277-37509296 None:intergenic 45.0%
TGCGCAATCAAATCCCTATG+TGG - chr3.1:37509367-37509386 None:intergenic 45.0%
TTCATGACCATGGGTGTACT+CGG - chr3.1:37511290-37511309 None:intergenic 45.0%
! AGTGGTTTTTCCTGAACCCA+TGG - chr3.1:37509395-37509414 None:intergenic 45.0%
! ATTGGGAGGTGTATCTGTAC+AGG + chr3.1:37511320-37511339 MS.gene82680:CDS 45.0%
! GTGGTTTTTCCTGAACCCAT+GGG - chr3.1:37509394-37509413 None:intergenic 45.0%
! TGTATCTGTACAGGGTTGGT+AGG + chr3.1:37511329-37511348 MS.gene82680:CDS 45.0%
! TTGGGAGGTGTATCTGTACA+GGG + chr3.1:37511321-37511340 MS.gene82680:CDS 45.0%
!! AGGAGTGTCCGTGCTTTATA+TGG + chr3.1:37509588-37509607 MS.gene82680:intron 45.0%
!! ATAGGTGGCCTTTTTGGTAC+CGG - chr3.1:37510006-37510025 None:intergenic 45.0%
!! CCGTGGCTTTGATAATCAAC+AGG + chr3.1:37511129-37511148 MS.gene82680:CDS 45.0%
!! GTATCTGTACAGGGTTGGTA+GGG + chr3.1:37511330-37511349 MS.gene82680:CDS 45.0%
!! TAGTGGCAGGAGTACCAATA+AGG - chr3.1:37510041-37510060 None:intergenic 45.0%
!! TGATCGACTTGTGTTTCTGC+AGG + chr3.1:37510724-37510743 MS.gene82680:intron 45.0%
!!! TTTTGGCTCCCATGTAACAG+AGG + chr3.1:37512055-37512074 MS.gene82680:CDS 45.0%
ACACAGACACCAGACACACA+CGG + chr3.1:37509530-37509549 MS.gene82680:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+TGG - chr3.1:37509136-37509155 None:intergenic 50.0%
AGATAAGGCGTGTCCTGTGT+TGG - chr3.1:37509567-37509586 None:intergenic 50.0%
CAAATGGGAGGTTGGAGACT+TGG - chr3.1:37511758-37511777 None:intergenic 50.0%
CAAGCTCAGGTTCATGACCA+TGG - chr3.1:37511300-37511319 None:intergenic 50.0%
CCCGTTGCTCAACATTCAAG+AGG + chr3.1:37509103-37509122 MS.gene82680:CDS 50.0%
CGAGAGAGACAAGTCTTCGA+AGG - chr3.1:37509254-37509273 None:intergenic 50.0%
GAGGAACTCCGGTACCAAAA+AGG + chr3.1:37509995-37510014 MS.gene82680:CDS 50.0%
GAGGTGTATCTGTACAGGGT+TGG + chr3.1:37511325-37511344 MS.gene82680:CDS 50.0%
GGGCAAATGCAGATAGCTTG+AGG - chr3.1:37509466-37509485 None:intergenic 50.0%
TACACCTCCCAATCAAGCTC+AGG - chr3.1:37511313-37511332 None:intergenic 50.0%
TACTCGGCAGGGAACTTTAG+TGG - chr3.1:37511274-37511293 None:intergenic 50.0%
TCCTTTCAGAGGAGGAACTC+CGG + chr3.1:37509984-37510003 MS.gene82680:CDS 50.0%
TGAACCTGAGCTTGATTGGG+AGG + chr3.1:37511306-37511325 MS.gene82680:CDS 50.0%
TGTCAGTGTTCGTGCTCCAT+AGG - chr3.1:37509640-37509659 None:intergenic 50.0%
TGTGCAGTTCCTTTCAGAGG+AGG + chr3.1:37509976-37509995 MS.gene82680:CDS 50.0%
TTGATTGCGCAAGCACCCAT+GGG + chr3.1:37509376-37509395 MS.gene82680:CDS 50.0%
TTTGATTGCGCAAGCACCCA+TGG + chr3.1:37509375-37509394 MS.gene82680:CDS 50.0%
! GATAGCTTGAGGAGCATGCA+AGG - chr3.1:37509455-37509474 None:intergenic 50.0%
! GCCATGATAGGTGGCCTTTT+TGG - chr3.1:37510012-37510031 None:intergenic 50.0%
! GCTTCTGAAGGGACTCTATG+TGG + chr3.1:37509279-37509298 MS.gene82680:CDS 50.0%
! TGCTGATCAACTGCTTGCTG+AGG + chr3.1:37510125-37510144 MS.gene82680:CDS 50.0%
ACCGGAGTTCCTCCTCTGAA+AGG - chr3.1:37509988-37510007 None:intergenic 55.0%
CACAGGACACGCCTTATCTG+AGG + chr3.1:37509568-37509587 MS.gene82680:intron 55.0%
CTCTCGCCGAAGCTTCTGAA+GGG + chr3.1:37509268-37509287 MS.gene82680:CDS 55.0%
GCACGGACACTCCTCAGATA+AGG - chr3.1:37509582-37509601 None:intergenic 55.0%
GTTGAGCAACGGGGTTTCTG+CGG - chr3.1:37509096-37509115 None:intergenic 55.0%
TCGTCTGATGTTCTTGCCCG+TGG + chr3.1:37511112-37511131 MS.gene82680:CDS 55.0%
TCTCTCGCCGAAGCTTCTGA+AGG + chr3.1:37509267-37509286 MS.gene82680:CDS 55.0%
TGTCAGTGTCCGTGTGTGTC+TGG - chr3.1:37509542-37509561 None:intergenic 55.0%
! GCTGGACGATTTGGACGCAA+GGG + chr3.1:37511352-37511371 MS.gene82680:CDS 55.0%
! GCTTGAGGAGCATGCAAGGT+TGG - chr3.1:37509451-37509470 None:intergenic 55.0%
! GTTGGTAGGGCTGGACGATT+TGG + chr3.1:37511343-37511362 MS.gene82680:CDS 55.0%
GACCATGGGTGTACTCGGCA+GGG - chr3.1:37511285-37511304 None:intergenic 60.0%
GGACACTGACACGCCAACAC+AGG + chr3.1:37509551-37509570 MS.gene82680:intron 60.0%
TGACCATGGGTGTACTCGGC+AGG - chr3.1:37511286-37511305 None:intergenic 60.0%
TTCCCTGCCGAGTACACCCA+TGG + chr3.1:37511280-37511299 MS.gene82680:CDS 60.0%
! GGCTGGACGATTTGGACGCA+AGG + chr3.1:37511351-37511370 MS.gene82680:CDS 60.0%
!! CTGTACAGGGTTGGTAGGGC+TGG + chr3.1:37511334-37511353 MS.gene82680:CDS 60.0%
GAGCAACGGGGTTTCTGCGG+CGG - chr3.1:37509093-37509112 None:intergenic 65.0%
GCGCAAGCACCCATGGGTTC+AGG + chr3.1:37509382-37509401 MS.gene82680:CDS 65.0%
!! AGGTTGGCGCCGACGTAACC+TGG - chr3.1:37509234-37509253 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 37509074 37512279 37509074 ID=MS.gene82680
chr3.1 mRNA 37509074 37512279 37509074 ID=MS.gene82680.t1;Parent=MS.gene82680
chr3.1 exon 37509074 37509124 37509074 ID=MS.gene82680.t1.exon1;Parent=MS.gene82680.t1
chr3.1 CDS 37509074 37509124 37509074 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37509235 37509507 37509235 ID=MS.gene82680.t1.exon2;Parent=MS.gene82680.t1
chr3.1 CDS 37509235 37509507 37509235 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37509925 37510146 37509925 ID=MS.gene82680.t1.exon3;Parent=MS.gene82680.t1
chr3.1 CDS 37509925 37510146 37509925 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37510433 37510498 37510433 ID=MS.gene82680.t1.exon4;Parent=MS.gene82680.t1
chr3.1 CDS 37510433 37510498 37510433 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37510746 37511150 37510746 ID=MS.gene82680.t1.exon5;Parent=MS.gene82680.t1
chr3.1 CDS 37510746 37511150 37510746 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37511244 37511373 37511244 ID=MS.gene82680.t1.exon6;Parent=MS.gene82680.t1
chr3.1 CDS 37511244 37511373 37511244 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37511991 37512076 37511991 ID=MS.gene82680.t1.exon7;Parent=MS.gene82680.t1
chr3.1 CDS 37511991 37512076 37511991 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
chr3.1 exon 37512217 37512279 37512217 ID=MS.gene82680.t1.exon8;Parent=MS.gene82680.t1
chr3.1 CDS 37512217 37512279 37512217 ID=cds.MS.gene82680.t1;Parent=MS.gene82680.t1
Gene Sequence

>MS.gene82680

ATGGCGAGTAAAAGCTCCGCCGCAGAAACCCCGTTGCTCAACATTCAAGAGGTTCGACACCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTTGGCGAGAAATTGACTTAGTCTTTTTGAATTCTGCTCCAGGTTACGTCGGCGCCAACCTTCGAAGACTTGTCTCTCTCGCCGAAGCTTCTGAAGGGACTCTATGTGGAGATGAGATTTGTTTTACCTAGCAAAATACAAGCCTTAAGCTTACCGATGATTCTGAATCCTCCACATAGGGATTTGATTGCGCAAGCACCCATGGGTTCAGGAAAAACCACTTGTTTCGTTCTTGGTATGCTTAGTCGTGTTGATCCAACCTTGCATGCTCCTCAAGCTATCTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGGTATAGTCACTATCAAGCACAGACACAGACACCAGACACACACGGACACTGACACGCCAACACAGGACACGCCTTATCTGAGGAGTGTCCGTGCTTTATATGGATAAACAACTTTTGTTATAATTGACACCTATGGAGCACGAACACTGACACTCTGACACGCCACACCGTTGATAATTTGATAAAATCACTTGAGTCAGTGTAATTATATGTGTCGGTGTCTGTGCTTGCCCTTTTCGAATTCCATAAACAACTTAACCTATGAACCATGGACATTGACACGCAAATCACATAATTTAGTGCAATTATATGTGTCGGTGTCTGTGCTTCATAAATTAACACTTACTATCATTTATTTTCTTATTTGATCTTTCTTAATAGCCTGTGTGATTTTTATTTTGTTGTGTTACGTTTTAGAACCATGCTGTTCTCCGTAAGATTGGGAAGTTCACGGGGATTAGCTCAGAATGTGCAGTTCCTTTCAGAGGAGGAACTCCGGTACCAAAAAGGCCACCTATCATGGCTCAAATCCTTATTGGTACTCCTGCCACTATTAAGACTTTGATTGGTTTCAAGAAACTTGCGTTGACAAAATTGAAGATTCTCGTTTTTGATGATGCTGATCAACTGCTTGCTGAGGTACATATTTCTCATGCTAATTATATGTTGTTTTACTACTCTTACATACAAGCACAACAACCATACATCTTTTATTGTTGGAGAATTACTTATACCCCGATTCGATTACTCAATAGCTAGACAAGTGATTGATGAGTGTTCCCATTCCAAACTAAACTTACTCAATGCTTCACTTTTTTTATTGAATTTGTCATGCGCTTTTCCTTTTCTTTGTTTTTTATTAGCAGGGTTTTGGTTTCTAAGTATGATGTGCTTTAATTTACCCTATAACTGTGTCTTGCTGCAGGATGAATTTCAAGATGATTCTCTGTGGATAATGAAGGCAGTAGAACATTACCATTTAATCTGTCAGGTTTGTTTGCTTAATGTGCTTGCATGTATGCCATACCATCCATCCAATACAAGAAACATGTATTTTCACGCCAAATAGTCTTTCCCCCGTGTTTAATATATTTGTTGGCTCTTCCTATTATATAATACTAAATATCAGACATAAAAATTTCAAATGCTTGTATCTGCTCTGTTGTGTGTGTTACCGTTGCTTTTTTCAGTTTTCTTTATTCCCTTAAGAAAATTTTGATCGACTTGTGTTTCTGCAGGTTCTTATGTTTTCGGCTACGTTTAATGACACTGTCAAGAATCTTATCACAAAGATTGTTGGCAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGATCTATCATTCGCTGCAGTGAAGCAGTACAAAGTTCGTGTTCCTGATGAACTCTCTAAGATTGAAGTTATTAATAACTATATACTTGAAATAGGAGAGAAAGTGGGGCAAACTATGATATTTGTGCACACCATAAATAGTGCAAAGATGTTACACAAAGCCCTTTTTGATAGGGGATATAAAGTTAGTTCCATAATAGATGTTCTTGAATATGACGAGAGAGACAAAATTATCGACGAGTTTAAAGATGGTTTGACTCAGATTCTTATATCGTCTGATGTTCTTGCCCGTGGCTTTGATAATCAACAGGTGCTCATTTGCTCTTCCTCTCTGTCTCACCTTTACATGTGCTTGGACTCTTTATTTATTTTTATTCATGCATCCTTCTATTGGATTGTTTAGGTTAATTTGGTTATCAACTATGATCTGCCACTAAAGTTCCCTGCCGAGTACACCCATGGTCATGAACCTGAGCTTGATTGGGAGGTGTATCTGTACAGGGTTGGTAGGGCTGGACGATTTGGACGCAAGGGTAAGTTTCTAAAACTGTTTGCTTGGTTGTGTTATGTAGTAAACTTCAGCTTAGTGTTGTGCAGTGAATTGTTTGCTTGGTTGTGTTATGTAGTAAACTGTCAACCTTAGTGTCCTGTAGTAAACTGGTAGCTTAGGGTTGTGTAGTTAACTGTTTAATTGGTTGCTGTTATTTTATTTTCCTCAAAGAAACATTCTTTTTGGGACCATGTTTCATTGATTGAAAAAAAGTTGTTGGTTCTATTATTACTCTAATCTTACTAGTCATATTTCAAGCTTCTTGTATATGTGGATAGGGAATGTTATTTCAGATTCGATAAAGTCTAGACATCGATAAAGTCTACATGCCCAAACCACCTAGTCTAGTTTCTAAGGCTTATATCCAAGTCTCCAACCTCCCATTTGTAGACATATGGCTTAAGTATTTCTTATAAAGGCTTGGACAATCTTCACCTTGATCCAGGATAGCATTTAGTATTTTGTTATGTCTGTATTTTAACATTTTCTGGTCCATTTGTAGTTTCACTTTCAAGTAAGTTATTTATGATATTTTCAGTAGTGGTGGTGCCAAATGCCAAGTCTTTTAATTTTTACACATGTTTTCATTGGACTGAACAGGGGCTGTATTTAACCTGATATGTGGTGAATGGGATGAAAATCTCATGTCGAAGATTGAAAACGATTTTGGCTCCCATGTAACAGAGGTAATGTACTTGTATTGTGATTATGATTCTCCATGCAGAATATAAAATCTTCATTATTCGAAGACTTTGTAGAATGTGCATAGGGTTATGGGTATGCCCAACTTACATGAATCATTTTGTTTATGTCATTGTGGATGTAGGTGCCAGAAAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAGGAAGCTGGTTTACTGATTTGA
Protein sequence

>MS.gene82680.t1

MASKSSAAETPLLNIQEVTSAPTFEDLSLSPKLLKGLYVEMRFVLPSKIQALSLPMILNPPHRDLIAQAPMGSGKTTCFVLGMLSRVDPTLHAPQAICICPTRELAIQNHAVLRKIGKFTGISSECAVPFRGGTPVPKRPPIMAQILIGTPATIKTLIGFKKLALTKLKILVFDDADQLLAEDEFQDDSLWIMKAVEHYHLICQVLMFSATFNDTVKNLITKIVGKEHNELFVKKEDLSFAAVKQYKVRVPDELSKIEVINNYILEIGEKVGQTMIFVHTINSAKMLHKALFDRGYKVSSIIDVLEYDERDKIIDEFKDGLTQILISSDVLARGFDNQQVNLVINYDLPLKFPAEYTHGHEPELDWEVYLYRVGRAGRFGRKGAVFNLICGEWDENLMSKIENDFGSHVTEVPERSVEDYKVALKEAGLLI