Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82930.t1 | XP_003595099.1 | 83 | 88 | 15 | 0 | 19 | 106 | 157 | 244 | 1.70E-34 | 155.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82930.t1 | P60039 | 65.4 | 104 | 23 | 1 | 16 | 106 | 139 | 242 | 7.1e-34 | 144.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82930.t1 | A0A072VPV6 | 83.0 | 88 | 15 | 0 | 19 | 106 | 188 | 275 | 1.2e-34 | 155.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene82930 | 0.838375 | 2.99E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene82930 | 0.804471 | 2.13E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene82930 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene049711 | MS.gene82930 | 0.810183 | 1.31E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene82930 | 0.800389 | 1.47E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene82930 | 0.837025 | 6.63E-57 | -1.69E-46 |
| MS.gene050026 | MS.gene82930 | 0.808508 | 2.99E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene82930 | 0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene82930 | 0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene82930 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene82930 | 0.826337 | 2.87E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene82930 | 0.826658 | 2.40E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene82930 | 0.842585 | 2.36E-58 | -1.69E-46 |
| MS.gene052519 | MS.gene82930 | 0.832736 | 7.97E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene82930 | 0.825994 | 3.46E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene82930 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene052867 | MS.gene82930 | 0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene82930 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene053145 | MS.gene82930 | 0.813005 | 3.19E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene82930 | 0.852665 | 3.98E-61 | -1.69E-46 |
| MS.gene053974 | MS.gene82930 | 0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene82930 | 0.800362 | 1.49E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene82930 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene82930 | 0.836386 | 9.65E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene82930 | 0.834508 | 2.88E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene82930 | 0.812271 | 4.61E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene82930 | 0.814126 | 1.81E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene82930 | 0.81219 | 4.80E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene82930 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene82930 | 0.848352 | 6.47E-60 | -1.69E-46 |
| MS.gene056050 | MS.gene82930 | 0.834345 | 3.16E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene82930 | 0.831064 | 2.06E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene82930 | 0.833612 | 4.83E-56 | -1.69E-46 |
| MS.gene057444 | MS.gene82930 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene82930 | 0.816095 | 6.60E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene82930 | 0.841269 | 5.26E-58 | -1.69E-46 |
| MS.gene059015 | MS.gene82930 | 0.815741 | 7.91E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene82930 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene82930 | 0.84916 | 3.86E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene82930 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene060352 | MS.gene82930 | 0.807133 | 5.87E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene82930 | 0.815697 | 8.10E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene82930 | 0.812033 | 5.20E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82930.t1 | MTR_2g038250 | 82.955 | 88 | 15 | 0 | 19 | 106 | 157 | 244 | 5.38e-49 | 155 |
| MS.gene82930.t1 | MTR_1g022385 | 82.955 | 88 | 15 | 0 | 19 | 106 | 188 | 275 | 1.11e-48 | 156 |
| MS.gene82930.t1 | MTR_4g008160 | 90.278 | 72 | 7 | 0 | 35 | 106 | 172 | 243 | 1.98e-44 | 144 |
| MS.gene82930.t1 | MTR_1g022375 | 84.722 | 72 | 11 | 0 | 25 | 96 | 85 | 156 | 4.76e-39 | 128 |
| MS.gene82930.t1 | MTR_7g059170 | 55.556 | 72 | 32 | 0 | 35 | 106 | 175 | 246 | 2.02e-25 | 95.5 |
| MS.gene82930.t1 | MTR_1g108785 | 75.676 | 37 | 8 | 1 | 63 | 98 | 23 | 59 | 7.42e-13 | 58.5 |
| MS.gene82930.t1 | MTR_2g020440 | 65.217 | 46 | 16 | 0 | 2 | 47 | 1031 | 1076 | 1.89e-12 | 62.4 |
| MS.gene82930.t1 | MTR_2g020440 | 78.378 | 37 | 8 | 0 | 2 | 38 | 1031 | 1067 | 1.10e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT3G13580 | 67.308 | 104 | 21 | 2 | 16 | 106 | 141 | 244 | 9.62e-45 | 145 |
| MS.gene82930.t1 | AT2G44120 | 65.385 | 104 | 23 | 1 | 16 | 106 | 139 | 242 | 1.04e-44 | 145 |
| MS.gene82930.t1 | AT2G44120 | 65.385 | 104 | 23 | 1 | 16 | 106 | 144 | 247 | 1.44e-44 | 144 |
| MS.gene82930.t1 | AT2G01250 | 67.308 | 104 | 21 | 1 | 16 | 106 | 139 | 242 | 1.75e-44 | 144 |
| MS.gene82930.t1 | AT1G80750 | 53.425 | 73 | 33 | 1 | 35 | 106 | 175 | 247 | 1.08e-19 | 80.9 |
Find 30 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTACTGGGTTTAGTATT+TGG | 0.096253 | 6.1:+2763466 | None:intergenic |
| CTTTACTGGGTTTAGTATTT+GGG | 0.155961 | 6.1:+2763467 | None:intergenic |
| ACTTGAAATGATCTCTTTAC+TGG | 0.251090 | 6.1:+2763453 | None:intergenic |
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 6.1:-2760473 | None:intergenic |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 6.1:-2760569 | MS.gene82930:CDS |
| AGTGTTCAATTGCAGGTTCT+TGG | 0.318308 | 6.1:-2760682 | MS.gene82930:intron |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 6.1:-2760568 | MS.gene82930:CDS |
| GTGTTCAATTGCAGGTTCTT+GGG | 0.397884 | 6.1:-2760681 | MS.gene82930:intron |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 6.1:-2760513 | MS.gene82930:CDS |
| AGTTTAGCATCGGCAGTTCA+TGG | 0.454294 | 6.1:-2763433 | MS.gene82930:CDS |
| ACATCAATGAACTCATTAGA+AGG | 0.462677 | 6.1:-2760483 | MS.gene82930:CDS |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 6.1:-2760532 | MS.gene82930:CDS |
| CTTGAAATGATCTCTTTACT+GGG | 0.501685 | 6.1:+2763454 | None:intergenic |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 6.1:+2760571 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 6.1:-2760594 | MS.gene82930:CDS |
| AGCATCGGCAGTTCATGGCC+AGG | 0.517384 | 6.1:-2763428 | MS.gene82930:intron |
| TTTACTGGGTTTAGTATTTG+GGG | 0.523446 | 6.1:+2763468 | None:intergenic |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 6.1:-2760520 | MS.gene82930:CDS |
| TGAAGTGAGATCCAACAGTC+AGG | 0.533373 | 6.1:+2760617 | None:intergenic |
| ATCCACGAGATCCTGACTGT+TGG | 0.544264 | 6.1:-2760628 | MS.gene82930:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 6.1:-2760673 | MS.gene82930:intron |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 6.1:+2760553 | None:intergenic |
| GATCATTTCAAGTTTAGCAT+CGG | 0.555247 | 6.1:-2763443 | MS.gene82930:CDS |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 6.1:+2760578 | None:intergenic |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 6.1:-2760565 | MS.gene82930:CDS |
| ATCCAACAGTCAGGATCTCG+TGG | 0.575620 | 6.1:+2760626 | None:intergenic |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 6.1:-2760529 | MS.gene82930:CDS |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 6.1:-2760512 | MS.gene82930:CDS |
| TGTTGGATCTCACTTCAGAG+AGG | 0.724978 | 6.1:-2760611 | MS.gene82930:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.745630 | 6.1:-2760509 | MS.gene82930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATATTCAAATTAAAA+AGG | + | chr6.1:2761222-2761241 | None:intergenic | 10.0% |
| !! | TATATTATATGAAAAGTAAA+TGG | + | chr6.1:2761394-2761413 | None:intergenic | 10.0% |
| !! | GAAAAATAGAAAAATTTAAC+CGG | + | chr6.1:2763274-2763293 | None:intergenic | 15.0% |
| !! | AAAATAGAGAATAAAGTACA+AGG | + | chr6.1:2761768-2761787 | None:intergenic | 20.0% |
| !! | AAATTAGAATGAAGTTAACA+AGG | + | chr6.1:2760709-2760728 | None:intergenic | 20.0% |
| !! | ATTTGAATATTCTTATGTTC+TGG | - | chr6.1:2761227-2761246 | MS.gene82930:intron | 20.0% |
| !! | TTCAAAATCAATAACTTCAA+AGG | + | chr6.1:2761262-2761281 | None:intergenic | 20.0% |
| !! | TTTATTATGAGTTAGTATTG+CGG | - | chr6.1:2760727-2760746 | MS.gene82930:intron | 20.0% |
| !!! | AATTTAAAGTATGTACTTGT+GGG | - | chr6.1:2762390-2762409 | MS.gene82930:intron | 20.0% |
| !!! | TAATTTAAAGTATGTACTTG+TGG | - | chr6.1:2762389-2762408 | MS.gene82930:intron | 20.0% |
| !!! | TGATGTTTGTTAATGAAAAT+TGG | - | chr6.1:2761043-2761062 | MS.gene82930:intron | 20.0% |
| !!! | TTAGAATATTTTCTTTCATG+TGG | - | chr6.1:2762047-2762066 | MS.gene82930:intron | 20.0% |
| !!! | TTCTTTCTTTGACTTATATA+TGG | - | chr6.1:2762322-2762341 | MS.gene82930:intron | 20.0% |
| !!! | TTGTGTAGAGAATTTTTTAT+CGG | - | chr6.1:2761153-2761172 | MS.gene82930:intron | 20.0% |
| ! | AAAACCCTAAAACAAACAAT+TGG | + | chr6.1:2760928-2760947 | None:intergenic | 25.0% |
| ! | ACTATCATATAATAGTGACA+TGG | - | chr6.1:2762130-2762149 | MS.gene82930:intron | 25.0% |
| ! | CAATTATACATCATTTGGAT+TGG | - | chr6.1:2761614-2761633 | MS.gene82930:intron | 25.0% |
| ! | CTTTCATATTTGTTCTTGTA+GGG | - | chr6.1:2762358-2762377 | MS.gene82930:intron | 25.0% |
| ! | GCTTATTATTGTTCAGAATT+GGG | - | chr6.1:2760993-2761012 | MS.gene82930:intron | 25.0% |
| ! | GTTTATCCAATTAATAGTGA+GGG | - | chr6.1:2762430-2762449 | MS.gene82930:intron | 25.0% |
| ! | TGATGTATAATTGACACATT+CGG | + | chr6.1:2761607-2761626 | None:intergenic | 25.0% |
| ! | TGCTCAACAATATTTAAACA+GGG | + | chr6.1:2761424-2761443 | None:intergenic | 25.0% |
| ! | TGCTTATTATTGTTCAGAAT+TGG | - | chr6.1:2760992-2761011 | MS.gene82930:intron | 25.0% |
| ! | TGTGTCAATTATACATCATT+TGG | - | chr6.1:2761609-2761628 | MS.gene82930:intron | 25.0% |
| ! | TGTGTGTTTAAAAACAATTC+TGG | - | chr6.1:2762676-2762695 | MS.gene82930:intron | 25.0% |
| ! | TGTTTATCCAATTAATAGTG+AGG | - | chr6.1:2762429-2762448 | MS.gene82930:intron | 25.0% |
| ! | TTAGAATTGGGAATTGTTAA+CGG | - | chr6.1:2760946-2760965 | MS.gene82930:intron | 25.0% |
| !! | AACAATCATAATTTTCTGCA+GGG | - | chr6.1:2760477-2760496 | MS.gene82930:CDS | 25.0% |
| !! | AATATTTTCTTTCATGTGGA+AGG | - | chr6.1:2762051-2762070 | MS.gene82930:intron | 25.0% |
| !! | AATTGGCTATTGTTTGAAAT+TGG | - | chr6.1:2761060-2761079 | MS.gene82930:intron | 25.0% |
| !! | ATTGGTAATTGTTCAGATTT+CGG | - | chr6.1:2761078-2761097 | MS.gene82930:intron | 25.0% |
| !! | GGTTTGAATTAACTCAATTT+TGG | - | chr6.1:2762021-2762040 | MS.gene82930:intron | 25.0% |
| !! | TGATTTTACTGTGTATTTGT+TGG | - | chr6.1:2761653-2761672 | MS.gene82930:intron | 25.0% |
| !!! | GAATTTTTTATCGGCAAATT+TGG | - | chr6.1:2761162-2761181 | MS.gene82930:intron | 25.0% |
| !!! | TGTTTTAGGGTTTTAGAATT+GGG | - | chr6.1:2760934-2760953 | MS.gene82930:intron | 25.0% |
| !!! | TTCTCCAATTGTTTGTTTTA+GGG | - | chr6.1:2760921-2760940 | MS.gene82930:intron | 25.0% |
| !!! | TTGTTTTAGGGTTTTAGAAT+TGG | - | chr6.1:2760933-2760952 | MS.gene82930:intron | 25.0% |
| !!! | TTTGAAAATTCTAGTCTTGA+TGG | - | chr6.1:2761276-2761295 | MS.gene82930:intron | 25.0% |
| AAGAGAAATCACTATGTTGA+AGG | - | chr6.1:2763453-2763472 | MS.gene82930:CDS | 30.0% | |
| AAGCATGATACTAAAGCATA+TGG | + | chr6.1:2761858-2761877 | None:intergenic | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | - | chr6.1:2763502-2763521 | MS.gene82930:CDS | 30.0% | |
| ACTTGAAATGATCTCTTTAC+TGG | + | chr6.1:2760535-2760554 | None:intergenic | 30.0% | |
| AGAGAAATTGGAGAATTGAT+AGG | + | chr6.1:2760897-2760916 | None:intergenic | 30.0% | |
| AGAGTTCAATTATACGAACA+TGG | + | chr6.1:2760816-2760835 | None:intergenic | 30.0% | |
| CAGAATTGGGAATTGTTAAT+GGG | - | chr6.1:2761006-2761025 | MS.gene82930:intron | 30.0% | |
| CAGATTTCGGAATTGTTAAT+GGG | - | chr6.1:2761091-2761110 | MS.gene82930:intron | 30.0% | |
| CTAAAACAAACAATTGGAGA+AGG | + | chr6.1:2760922-2760941 | None:intergenic | 30.0% | |
| CTTGAAATGATCTCTTTACT+GGG | + | chr6.1:2760534-2760553 | None:intergenic | 30.0% | |
| CTTTACTGGGTTTAGTATTT+GGG | + | chr6.1:2760521-2760540 | None:intergenic | 30.0% | |
| GCTTTCATATTTGTTCTTGT+AGG | - | chr6.1:2762357-2762376 | MS.gene82930:intron | 30.0% | |
| GTGCTCAACAATATTTAAAC+AGG | + | chr6.1:2761425-2761444 | None:intergenic | 30.0% | |
| TAGAATTGGGAATTGTTAAC+GGG | - | chr6.1:2760947-2760966 | MS.gene82930:intron | 30.0% | |
| TCAAACCTAAAATACAACCT+TGG | + | chr6.1:2762008-2762027 | None:intergenic | 30.0% | |
| TCAGAATTGGGAATTGTTAA+TGG | - | chr6.1:2761005-2761024 | MS.gene82930:intron | 30.0% | |
| TCAGATTTCGGAATTGTTAA+TGG | - | chr6.1:2761090-2761109 | MS.gene82930:intron | 30.0% | |
| TCCATTCTCATATTCATTAG+TGG | - | chr6.1:2761533-2761552 | MS.gene82930:intron | 30.0% | |
| TCTTTACTGGGTTTAGTATT+TGG | + | chr6.1:2760522-2760541 | None:intergenic | 30.0% | |
| TGATCAAGGTCTTCAAAAAT+TGG | - | chr6.1:2762795-2762814 | MS.gene82930:intron | 30.0% | |
| TTTACTGGGTTTAGTATTTG+GGG | + | chr6.1:2760520-2760539 | None:intergenic | 30.0% | |
| TTTGATCTAGCAATTGTTCA+CGG | + | chr6.1:2760675-2760694 | None:intergenic | 30.0% | |
| ! | GAACAATCATAATTTTCTGC+AGG | - | chr6.1:2760476-2760495 | MS.gene82930:CDS | 30.0% |
| ! | TCTATTTTCATTCTCCTAGT+GGG | - | chr6.1:2761780-2761799 | MS.gene82930:intron | 30.0% |
| !! | CTTCTCCAATTGTTTGTTTT+AGG | - | chr6.1:2760920-2760939 | MS.gene82930:intron | 30.0% |
| !! | GATCATTTCAAGTTTAGCAT+CGG | - | chr6.1:2760542-2760561 | MS.gene82930:CDS | 30.0% |
| !! | GGTGCTATTATTATTGTTGA+AGG | - | chr6.1:2763240-2763259 | MS.gene82930:intron | 30.0% |
| !!! | TTTTTTATCGGCAAATTTGG+TGG | - | chr6.1:2761165-2761184 | MS.gene82930:intron | 30.0% |
| AACAACTCACATTCTGACTT+TGG | + | chr6.1:2763145-2763164 | None:intergenic | 35.0% | |
| AACATACACCACACAAGTTT+AGG | + | chr6.1:2762507-2762526 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+GGG | + | chr6.1:2763232-2763251 | None:intergenic | 35.0% | |
| AATTGGGTAAAGTACAGAGT+CGG | + | chr6.1:2763120-2763139 | None:intergenic | 35.0% | |
| AATTGTCTATTGTTGTCTCC+TGG | - | chr6.1:2760774-2760793 | MS.gene82930:intron | 35.0% | |
| ACATTCTGACTTTGGCAAAT+TGG | + | chr6.1:2763137-2763156 | None:intergenic | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | - | chr6.1:2763456-2763475 | MS.gene82930:CDS | 35.0% | |
| AGTATCATGCTTTCGTAACT+TGG | - | chr6.1:2761866-2761885 | MS.gene82930:intron | 35.0% | |
| AGTCAAAGAAAGAATCGCAT+TGG | + | chr6.1:2762316-2762335 | None:intergenic | 35.0% | |
| ATACATGCTAGCATTCTAGT+AGG | - | chr6.1:2762078-2762097 | MS.gene82930:intron | 35.0% | |
| ATACTATTGTGCTTGGGATT+TGG | - | chr6.1:2761965-2761984 | MS.gene82930:intron | 35.0% | |
| ATACTCTACCTAAACTTGTG+TGG | - | chr6.1:2762496-2762515 | MS.gene82930:intron | 35.0% | |
| ATCCAATTAATAGTGAGGGA+TGG | - | chr6.1:2762434-2762453 | MS.gene82930:intron | 35.0% | |
| ATTGTCTATTGTTGTCTCCT+GGG | - | chr6.1:2760775-2760794 | MS.gene82930:intron | 35.0% | |
| ATTGTTGAAGGTTATGTTGC+CGG | - | chr6.1:2763252-2763271 | MS.gene82930:intron | 35.0% | |
| CAATTGTTCACGGAAAAACA+TGG | + | chr6.1:2760665-2760684 | None:intergenic | 35.0% | |
| CATGATACTAAAGCATATGG+AGG | + | chr6.1:2761855-2761874 | None:intergenic | 35.0% | |
| CATTCTGACTTTGGCAAATT+GGG | + | chr6.1:2763136-2763155 | None:intergenic | 35.0% | |
| CCAACTCTTCAATTTCATCT+AGG | + | chr6.1:2761692-2761711 | None:intergenic | 35.0% | |
| CCTAGATGAAATTGAAGAGT+TGG | - | chr6.1:2761689-2761708 | MS.gene82930:intron | 35.0% | |
| CGGCAATAACAGATTAGTAT+AGG | + | chr6.1:2761587-2761606 | None:intergenic | 35.0% | |
| CTGAACTGTATGACATAGAT+GGG | - | chr6.1:2763081-2763100 | MS.gene82930:intron | 35.0% | |
| CTTCGTATACTATTGTGCTT+GGG | - | chr6.1:2761959-2761978 | MS.gene82930:intron | 35.0% | |
| CTTCTTGTACTTTGTCTCTT+TGG | + | chr6.1:2762558-2762577 | None:intergenic | 35.0% | |
| GCATGTCATCTGATAATATG+GGG | - | chr6.1:2761813-2761832 | MS.gene82930:intron | 35.0% | |
| GCCACTAATGAATATGAGAA+TGG | + | chr6.1:2761537-2761556 | None:intergenic | 35.0% | |
| GCCTAGTTGAATTCAAAAAG+GGG | + | chr6.1:2762531-2762550 | None:intergenic | 35.0% | |
| GGCATGTCATCTGATAATAT+GGG | - | chr6.1:2761812-2761831 | MS.gene82930:intron | 35.0% | |
| GGCCTAGTTGAATTCAAAAA+GGG | + | chr6.1:2762532-2762551 | None:intergenic | 35.0% | |
| GTGATAACTACATCCAATGA+GGG | + | chr6.1:2762289-2762308 | None:intergenic | 35.0% | |
| TAATAATAGCACCACCATAC+AGG | + | chr6.1:2763233-2763252 | None:intergenic | 35.0% | |
| TACCATCCCTCACTATTAAT+TGG | + | chr6.1:2762439-2762458 | None:intergenic | 35.0% | |
| TCAATTCTCTAACACTCTTC+AGG | + | chr6.1:2762938-2762957 | None:intergenic | 35.0% | |
| TCTGAACTGTATGACATAGA+TGG | - | chr6.1:2763080-2763099 | MS.gene82930:intron | 35.0% | |
| TGACATGGTTTATGCATCTA+CGG | - | chr6.1:2762145-2762164 | MS.gene82930:intron | 35.0% | |
| TGGCATGTCATCTGATAATA+TGG | - | chr6.1:2761811-2761830 | MS.gene82930:intron | 35.0% | |
| TGGCCTAGTTGAATTCAAAA+AGG | + | chr6.1:2762533-2762552 | None:intergenic | 35.0% | |
| TGTACTTTGTCTCTTTGGAT+TGG | + | chr6.1:2762553-2762572 | None:intergenic | 35.0% | |
| TGTGATAACTACATCCAATG+AGG | + | chr6.1:2762290-2762309 | None:intergenic | 35.0% | |
| TGTGTGATCAAATGAAAGCA+GGG | + | chr6.1:2763052-2763071 | None:intergenic | 35.0% | |
| TGTTAAGTGGTGTCTTCAAT+TGG | - | chr6.1:2762768-2762787 | MS.gene82930:intron | 35.0% | |
| TTCAGAAACTCCAAATCTGA+CGG | - | chr6.1:2761732-2761751 | MS.gene82930:intron | 35.0% | |
| TTGGAGAAGGAAAGAGAAAT+TGG | + | chr6.1:2760909-2760928 | None:intergenic | 35.0% | |
| ! | AGTGGATGCTGGATATTTTT+CGG | - | chr6.1:2762632-2762651 | MS.gene82930:intron | 35.0% |
| ! | ATGTGTTTTGCTGCTGATAA+TGG | + | chr6.1:2761500-2761519 | None:intergenic | 35.0% |
| ! | CTCTATTTTCATTCTCCTAG+TGG | - | chr6.1:2761779-2761798 | MS.gene82930:intron | 35.0% |
| ! | TACTGTGTATTTGTTGGTTG+CGG | - | chr6.1:2761659-2761678 | MS.gene82930:intron | 35.0% |
| ! | TCCCCTTTTTGAATTCAACT+AGG | - | chr6.1:2762527-2762546 | MS.gene82930:intron | 35.0% |
| AAGAAGATTGCAGCAAAACC+AGG | - | chr6.1:2762572-2762591 | MS.gene82930:intron | 40.0% | |
| AAGCGTGAAGCTAAGCTTAA+GGG | - | chr6.1:2762896-2762915 | MS.gene82930:intron | 40.0% | |
| AAGCTGAGAAAGAACATGGT+TGG | - | chr6.1:2762208-2762227 | MS.gene82930:intron | 40.0% | |
| AGAGAATTGATCTACTAGCG+CGG | - | chr6.1:2762948-2762967 | MS.gene82930:intron | 40.0% | |
| AGTGTTCAATTGCAGGTTCT+TGG | - | chr6.1:2763303-2763322 | MS.gene82930:intron | 40.0% | |
| ATAATAGCACCACCATACAG+GGG | + | chr6.1:2763231-2763250 | None:intergenic | 40.0% | |
| CAATTCTGGTGACATTTCGA+TGG | - | chr6.1:2762690-2762709 | MS.gene82930:intron | 40.0% | |
| CCAAGTGCTTATGACATACA+AGG | + | chr6.1:2762748-2762767 | None:intergenic | 40.0% | |
| CCTTGTATGTCATAAGCACT+TGG | - | chr6.1:2762745-2762764 | MS.gene82930:intron | 40.0% | |
| CTGTGTGATCAAATGAAAGC+AGG | + | chr6.1:2763053-2763072 | None:intergenic | 40.0% | |
| GAGAAAGCTGAGAAAGAACA+TGG | - | chr6.1:2762204-2762223 | MS.gene82930:intron | 40.0% | |
| GCTTCGTATACTATTGTGCT+TGG | - | chr6.1:2761958-2761977 | MS.gene82930:intron | 40.0% | |
| GGAATACGATGATTCGCAAT+AGG | - | chr6.1:2762859-2762878 | MS.gene82930:intron | 40.0% | |
| GTGGTAGCAGATTGTATCTA+AGG | - | chr6.1:2762838-2762857 | MS.gene82930:intron | 40.0% | |
| GTGTTCAATTGCAGGTTCTT+GGG | - | chr6.1:2763304-2763323 | MS.gene82930:intron | 40.0% | |
| TAGAAGAACACCGTCAGATT+TGG | + | chr6.1:2761745-2761764 | None:intergenic | 40.0% | |
| TGATGTGTGTATTGCTCAAG+TGG | - | chr6.1:2762614-2762633 | MS.gene82930:intron | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | - | chr6.1:2763417-2763436 | MS.gene82930:intron | 40.0% | |
| TTTCAAGCTCAAAGCTCCTT+TGG | - | chr6.1:2763416-2763435 | MS.gene82930:intron | 40.0% | |
| ! | AGCAGCCAAGGTTGTATTTT+AGG | - | chr6.1:2762000-2762019 | MS.gene82930:intron | 40.0% |
| ! | CCTTGAAACATCCTTTTCCA+GGG | - | chr6.1:2762260-2762279 | MS.gene82930:intron | 40.0% |
| ! | GTGGATGCTGGATATTTTTC+GGG | - | chr6.1:2762633-2762652 | MS.gene82930:intron | 40.0% |
| ! | TCCTTGAAACATCCTTTTCC+AGG | - | chr6.1:2762259-2762278 | MS.gene82930:intron | 40.0% |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | + | chr6.1:2763417-2763436 | None:intergenic | 40.0% |
| !! | CATAAGCACTTGGTGTTAAG+TGG | - | chr6.1:2762755-2762774 | MS.gene82930:intron | 40.0% |
| !! | TTGGGAATTGTTAACGGGTT+AGG | - | chr6.1:2760952-2760971 | MS.gene82930:intron | 40.0% |
| AATCCAAACTGATGCTCTGG+TGG | - | chr6.1:2762819-2762838 | MS.gene82930:intron | 45.0% | |
| AATGAGGGATTCCCTGGAAA+AGG | + | chr6.1:2762274-2762293 | None:intergenic | 45.0% | |
| ACACCCGCAGATAAATCTCA+TGG | + | chr6.1:2761327-2761346 | None:intergenic | 45.0% | |
| ATGCCAGCTTATTACCCACT+AGG | + | chr6.1:2761797-2761816 | None:intergenic | 45.0% | |
| CAACCACAGATGAGTATAGC+TGG | + | chr6.1:2760609-2760628 | None:intergenic | 45.0% | |
| CACGAAGAAAGATGCATACC+TGG | + | chr6.1:2760578-2760597 | None:intergenic | 45.0% | |
| CATGGTTTATGCATCTACGG+AGG | - | chr6.1:2762148-2762167 | MS.gene82930:intron | 45.0% | |
| CCCTGGAAAAGGATGTTTCA+AGG | + | chr6.1:2762263-2762282 | None:intergenic | 45.0% | |
| CTGACACAGTGTTCAATTGC+AGG | - | chr6.1:2763296-2763315 | MS.gene82930:intron | 45.0% | |
| CTGCCATGAGATTTATCTGC+GGG | - | chr6.1:2761321-2761340 | MS.gene82930:intron | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | + | chr6.1:2763410-2763429 | None:intergenic | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | - | chr6.1:2762895-2762914 | MS.gene82930:intron | 45.0% | |
| GAGAGGCAAACAACTTCCTA+TGG | - | chr6.1:2763391-2763410 | MS.gene82930:intron | 45.0% | |
| GCTGCCATGAGATTTATCTG+CGG | - | chr6.1:2761320-2761339 | MS.gene82930:intron | 45.0% | |
| GGAAATCCAAACTGATGCTC+TGG | - | chr6.1:2762816-2762835 | MS.gene82930:intron | 45.0% | |
| GTTGTCACTCACTCACTCTA+AGG | - | chr6.1:2760867-2760886 | MS.gene82930:intron | 45.0% | |
| TATCAGCTATGCTTCTGTCC+TGG | + | chr6.1:2762593-2762612 | None:intergenic | 45.0% | |
| TCTCCAGCTATACTCATCTG+TGG | - | chr6.1:2760603-2760622 | MS.gene82930:CDS | 45.0% | |
| TGAAGTGAGATCCAACAGTC+AGG | + | chr6.1:2763371-2763390 | None:intergenic | 45.0% | |
| TGTATTGCTCAAGTGGATGC+TGG | - | chr6.1:2762621-2762640 | MS.gene82930:intron | 45.0% | |
| TGTTGGATCTCACTTCAGAG+AGG | - | chr6.1:2763374-2763393 | MS.gene82930:intron | 45.0% | |
| TTCGATGGCTGTGTGCAAAA+AGG | - | chr6.1:2762705-2762724 | MS.gene82930:intron | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | + | chr6.1:2763435-2763454 | None:intergenic | 45.0% | |
| TTGATCTACTAGCGCGGTTA+TGG | - | chr6.1:2762954-2762973 | MS.gene82930:intron | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | - | chr6.1:2763312-2763331 | MS.gene82930:intron | 45.0% | |
| TTTATGCATCTACGGAGGTC+AGG | - | chr6.1:2762153-2762172 | MS.gene82930:intron | 45.0% | |
| ! | GCGGTTATGGAAAGGTTGAT+AGG | - | chr6.1:2762967-2762986 | MS.gene82930:intron | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | - | chr6.1:2763465-2763484 | MS.gene82930:CDS | 45.0% |
| ! | TCTCCTAGTGGGTAATAAGC+TGG | - | chr6.1:2761791-2761810 | MS.gene82930:intron | 45.0% |
| ! | TTTTCCAGGGAATCCCTCAT+TGG | - | chr6.1:2762273-2762292 | MS.gene82930:intron | 45.0% |
| !! | AGTTTAGCATCGGCAGTTCA+TGG | - | chr6.1:2760552-2760571 | MS.gene82930:CDS | 45.0% |
| !!! | GATGCTGGATATTTTTCGGG+TGG | - | chr6.1:2762636-2762655 | MS.gene82930:intron | 45.0% |
| AAGCTCAAAGCTCCTTTGGG+TGG | - | chr6.1:2763420-2763439 | MS.gene82930:intron | 50.0% | |
| ACATCCAATGAGGGATTCCC+TGG | + | chr6.1:2762280-2762299 | None:intergenic | 50.0% | |
| ATAAGCTAGAGCAGCAGCCA+AGG | - | chr6.1:2761988-2762007 | MS.gene82930:intron | 50.0% | |
| ATCCAACAGTCAGGATCTCG+TGG | + | chr6.1:2763362-2763381 | None:intergenic | 50.0% | |
| ATCCACGAGATCCTGACTGT+TGG | - | chr6.1:2763357-2763376 | MS.gene82930:intron | 50.0% | |
| CGTGAAGCTAAGCTTAAGGG+TGG | - | chr6.1:2762899-2762918 | MS.gene82930:intron | 50.0% | |
| CTACTAGCGCGGTTATGGAA+AGG | - | chr6.1:2762959-2762978 | MS.gene82930:intron | 50.0% | |
| CTTCAATTGGCGCGTGATCA+AGG | - | chr6.1:2762781-2762800 | MS.gene82930:intron | 50.0% | |
| CTTGACCAATGTCCCCTGTA+TGG | - | chr6.1:2763216-2763235 | MS.gene82930:intron | 50.0% | |
| TTCGGGTGGCTACACTACTT+CGG | - | chr6.1:2762650-2762669 | MS.gene82930:intron | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | - | chr6.1:2763472-2763491 | MS.gene82930:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | - | chr6.1:2763473-2763492 | MS.gene82930:CDS | 50.0% |
| ! | CTACCACCAGAGCATCAGTT+TGG | + | chr6.1:2762825-2762844 | None:intergenic | 50.0% |
| !!! | TCTGCGGGTGTTGCTGATTT+TGG | - | chr6.1:2761336-2761355 | MS.gene82930:intron | 50.0% |
| CACCACCATACAGGGGACAT+TGG | + | chr6.1:2763224-2763243 | None:intergenic | 55.0% | |
| GACCAATGTCCCCTGTATGG+TGG | - | chr6.1:2763219-2763238 | MS.gene82930:intron | 55.0% | |
| TCGGGTGGCTACACTACTTC+GGG | - | chr6.1:2762651-2762670 | MS.gene82930:intron | 55.0% | |
| ! | GGATCTGTGTTTCTGAGCCC+AGG | + | chr6.1:2760795-2760814 | None:intergenic | 55.0% |
| ! | TGGTGATGCTGGTAACAGGG+AGG | - | chr6.1:2763476-2763495 | MS.gene82930:CDS | 55.0% |
| CGGGTGGCTACACTACTTCG+GGG | - | chr6.1:2762652-2762671 | MS.gene82930:intron | 60.0% | |
| GAGGTCAGGAGAGGCTACAG+AGG | - | chr6.1:2762167-2762186 | MS.gene82930:intron | 60.0% | |
| GCATCTACGGAGGTCAGGAG+AGG | - | chr6.1:2762158-2762177 | MS.gene82930:intron | 60.0% | |
| !! | AGCATCGGCAGTTCATGGCC+AGG | - | chr6.1:2760557-2760576 | MS.gene82930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 2760474 | 2763533 | 2760474 | ID=MS.gene82930 |
| chr6.1 | mRNA | 2760474 | 2763533 | 2760474 | ID=MS.gene82930.t1;Parent=MS.gene82930 |
| chr6.1 | exon | 2763429 | 2763533 | 2763429 | ID=MS.gene82930.t1.exon1;Parent=MS.gene82930.t1 |
| chr6.1 | CDS | 2763429 | 2763533 | 2763429 | ID=cds.MS.gene82930.t1;Parent=MS.gene82930.t1 |
| chr6.1 | exon | 2760474 | 2760689 | 2760474 | ID=MS.gene82930.t1.exon2;Parent=MS.gene82930.t1 |
| chr6.1 | CDS | 2760474 | 2760689 | 2760474 | ID=cds.MS.gene82930.t1;Parent=MS.gene82930.t1 |
| Gene Sequence |
| Protein sequence |
