Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84373.t1 | AFK37837.1 | 95.9 | 492 | 19 | 1 | 1 | 492 | 1 | 491 | 3.10E-261 | 910.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84373.t1 | Q5B5X8 | 32.4 | 339 | 174 | 14 | 196 | 488 | 59 | 388 | 1.5e-38 | 162.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84373.t1 | I3SC45 | 95.9 | 492 | 19 | 1 | 1 | 492 | 1 | 491 | 2.3e-261 | 910.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene84373 | 0.827266 | 1.72E-54 | -1.69E-46 |
| MS.gene051158 | MS.gene84373 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene84373 | 0.836923 | 7.04E-57 | -1.69E-46 |
| MS.gene052211 | MS.gene84373 | 0.8164 | 5.64E-52 | -1.69E-46 |
| MS.gene052223 | MS.gene84373 | 0.828377 | 9.30E-55 | -1.69E-46 |
| MS.gene05233 | MS.gene84373 | 0.819674 | 1.03E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene84373 | 0.814858 | 1.24E-51 | -1.69E-46 |
| MS.gene05244 | MS.gene84373 | 0.82043 | 6.89E-53 | -1.69E-46 |
| MS.gene053406 | MS.gene84373 | 0.853422 | 2.42E-61 | -1.69E-46 |
| MS.gene054277 | MS.gene84373 | 0.821215 | 4.55E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene84373 | 0.848272 | 6.81E-60 | -1.69E-46 |
| MS.gene055240 | MS.gene84373 | 0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene055595 | MS.gene84373 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene055597 | MS.gene84373 | 0.815305 | 9.90E-52 | -1.69E-46 |
| MS.gene055601 | MS.gene84373 | 0.833143 | 6.32E-56 | -1.69E-46 |
| MS.gene056330 | MS.gene84373 | 0.808837 | 2.55E-50 | -1.69E-46 |
| MS.gene056690 | MS.gene84373 | 0.823736 | 1.18E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene84373 | 0.830412 | 2.98E-55 | -1.69E-46 |
| MS.gene056920 | MS.gene84373 | 0.843483 | 1.36E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene84373 | 0.803569 | 3.27E-49 | -1.69E-46 |
| MS.gene056923 | MS.gene84373 | 0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene056924 | MS.gene84373 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene058218 | MS.gene84373 | 0.814788 | 1.29E-51 | -1.69E-46 |
| MS.gene059043 | MS.gene84373 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene84373 | 0.811273 | 7.60E-51 | -1.69E-46 |
| MS.gene059402 | MS.gene84373 | 0.825773 | 3.90E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene84373 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene84373 | 0.815204 | 1.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84373.t1 | MTR_3g009010 | 95.122 | 492 | 23 | 1 | 1 | 492 | 72 | 562 | 0.0 | 976 |
| MS.gene84373.t1 | MTR_3g008960 | 90.650 | 492 | 43 | 1 | 1 | 492 | 1 | 489 | 0.0 | 924 |
| MS.gene84373.t1 | MTR_3g009020 | 83.333 | 468 | 77 | 1 | 26 | 492 | 6 | 473 | 0.0 | 821 |
| MS.gene84373.t1 | MTR_3g009030 | 78.916 | 498 | 98 | 4 | 1 | 492 | 1 | 497 | 0.0 | 785 |
| MS.gene84373.t1 | MTR_8g091310 | 61.677 | 501 | 178 | 5 | 6 | 492 | 6 | 506 | 0.0 | 654 |
| MS.gene84373.t1 | MTR_5g062190 | 53.953 | 506 | 215 | 8 | 1 | 492 | 6 | 507 | 0.0 | 563 |
| MS.gene84373.t1 | MTR_5g062290 | 53.226 | 496 | 217 | 8 | 8 | 492 | 14 | 505 | 0.0 | 544 |
| MS.gene84373.t1 | MTR_3g086750 | 47.610 | 502 | 240 | 11 | 9 | 492 | 9 | 505 | 3.35e-160 | 465 |
| MS.gene84373.t1 | MTR_4g035760 | 48.780 | 123 | 62 | 1 | 371 | 492 | 57 | 179 | 1.86e-38 | 138 |
| MS.gene84373.t1 | MTR_5g061980 | 54.206 | 107 | 46 | 3 | 161 | 265 | 87 | 192 | 1.24e-31 | 124 |
| MS.gene84373.t1 | MTR_5g061980 | 46.591 | 88 | 45 | 2 | 348 | 433 | 219 | 306 | 2.30e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 99 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGATCACATAAGTATT+TGG | 0.123305 | 3.1:+4449251 | None:intergenic |
| CTTCTGGTTGGGAAACATTT+AGG | 0.131349 | 3.1:-4451581 | MS.gene84373:CDS |
| CTATTATTTGAGCTTCTTAT+TGG | 0.156319 | 3.1:-4453346 | MS.gene84373:CDS |
| ACATATCTTTGCGCTGAAAA+TGG | 0.170576 | 3.1:-4451639 | MS.gene84373:CDS |
| GCTTACAAAGCTGTGAATTT+AGG | 0.195268 | 3.1:-4453288 | MS.gene84373:CDS |
| TGCATTACTACAATATGTTT+TGG | 0.227561 | 3.1:-4449157 | MS.gene84373:CDS |
| TTATAATCTGAAATGTTTCT+TGG | 0.244588 | 3.1:+4451331 | None:intergenic |
| TTCAGATTCATGTCACAAAA+TGG | 0.258732 | 3.1:-4450528 | MS.gene84373:CDS |
| AAGAAACATTTCAGATTATA+AGG | 0.276821 | 3.1:-4451329 | MS.gene84373:CDS |
| TCATAGAGTTCTTAGCAAAA+AGG | 0.293278 | 3.1:-4449826 | MS.gene84373:intron |
| TTCTGGTTGGGAAACATTTA+GGG | 0.295890 | 3.1:-4451580 | MS.gene84373:intron |
| CTCAAGTGGTTGATCGAAAA+TGG | 0.301104 | 3.1:-4448491 | MS.gene84373:CDS |
| CAGATTATGAGGGCACAAAT+TGG | 0.303729 | 3.1:-4450777 | MS.gene84373:CDS |
| GCAGTTGAAGGTTCTCAAAA+TGG | 0.307654 | 3.1:-4449920 | MS.gene84373:CDS |
| TTTGTGCTTGGACATATCTT+TGG | 0.315120 | 3.1:+4448585 | None:intergenic |
| GTTTATTCTCGTGCAACATT+TGG | 0.336983 | 3.1:-4448557 | MS.gene84373:CDS |
| ACATGATCACATAAGTATTT+GGG | 0.338303 | 3.1:+4449252 | None:intergenic |
| CATATCTTTGCGCTGAAAAT+GGG | 0.349908 | 3.1:-4451638 | MS.gene84373:CDS |
| AAGCTGTGAATTTAGGAAAC+TGG | 0.354101 | 3.1:-4453281 | MS.gene84373:CDS |
| ACAAAGGGCTTAGGTGGGTT+TGG | 0.374973 | 3.1:+4450459 | None:intergenic |
| ACCCACCTAAGCCCTTTGTT+GGG | 0.376973 | 3.1:-4450455 | MS.gene84373:CDS |
| GTTGAACACCCTAAAATTGA+AGG | 0.385361 | 3.1:+4451425 | None:intergenic |
| GCCGACCGTAGTTCACCTTC+TGG | 0.397256 | 3.1:-4451597 | MS.gene84373:CDS |
| ATCAGTGACTGCAGATTATG+AGG | 0.405023 | 3.1:-4450788 | MS.gene84373:CDS |
| CTATCTTGATTGACACTTAG+TGG | 0.410417 | 3.1:+4449323 | None:intergenic |
| TGGCTCATTTGCAGCTTTGG+AGG | 0.420703 | 3.1:-4451461 | MS.gene84373:intron |
| CCGTAGTTCACCTTCTGGTT+GGG | 0.427471 | 3.1:-4451592 | MS.gene84373:CDS |
| AACCCACCTAAGCCCTTTGT+TGG | 0.428232 | 3.1:-4450456 | MS.gene84373:CDS |
| TACCAACTTACTAATGGTTA+TGG | 0.431118 | 3.1:-4450697 | MS.gene84373:CDS |
| ATGGAACCTTCTCGCTTTGA+CGG | 0.442568 | 3.1:-4453240 | MS.gene84373:CDS |
| CTTCTTCTCTCATTTGTCAA+AGG | 0.444788 | 3.1:-4449203 | MS.gene84373:CDS |
| CGCCATAACCATTAGTAAGT+TGG | 0.454539 | 3.1:+4450695 | None:intergenic |
| ACCGTAGTTCACCTTCTGGT+TGG | 0.463053 | 3.1:-4451593 | MS.gene84373:CDS |
| TTTCAGCGCAAAGATATGTC+TGG | 0.466042 | 3.1:+4451643 | None:intergenic |
| GGCTCATTTGCAGCTTTGGA+GGG | 0.466108 | 3.1:-4451460 | MS.gene84373:intron |
| AATAAACTTCCATTTGTGCT+TGG | 0.467117 | 3.1:+4448573 | None:intergenic |
| TGAAATGTTTCTTGGTTGCT+AGG | 0.468956 | 3.1:+4451339 | None:intergenic |
| ATTCTCGTGCAACATTTGGA+TGG | 0.472196 | 3.1:-4448553 | MS.gene84373:CDS |
| GTGGACTTGCATGCAGTTGA+AGG | 0.475672 | 3.1:-4449932 | MS.gene84373:CDS |
| AGATTATGAGGGCACAAATT+GGG | 0.477446 | 3.1:-4450776 | MS.gene84373:CDS |
| TTCTCGTGCAACATTTGGAT+GGG | 0.478579 | 3.1:-4448552 | MS.gene84373:CDS |
| TTTGTGGGGTTAAATAATAT+AGG | 0.482260 | 3.1:-4451396 | MS.gene84373:CDS |
| GATAGAGCCGGGGATCTTAG+TGG | 0.482843 | 3.1:-4449083 | MS.gene84373:CDS |
| TGAGCTATCCACCATCCAAC+AGG | 0.483400 | 3.1:+4450486 | None:intergenic |
| GGAGAATACCAACTTACTAA+TGG | 0.490578 | 3.1:-4450703 | MS.gene84373:CDS |
| ATTCGAATCAAAGCATCAAA+TGG | 0.491455 | 3.1:-4451285 | MS.gene84373:CDS |
| AAGATATGTCCAAGCACAAA+TGG | 0.494100 | 3.1:-4448582 | MS.gene84373:CDS |
| AATTGTCAACAAAGATCTCT+TGG | 0.496005 | 3.1:-4453217 | MS.gene84373:intron |
| TAGGGGAATGGACGGCTGAA+TGG | 0.496560 | 3.1:-4448637 | MS.gene84373:CDS |
| CAAGAGATGGATATACAGAA+TGG | 0.497454 | 3.1:-4449880 | MS.gene84373:CDS |
| GTTGCTAGGTGAATCTGAAA+AGG | 0.499593 | 3.1:+4451353 | None:intergenic |
| AAGAGATGGATATACAGAAT+GGG | 0.502002 | 3.1:-4449879 | MS.gene84373:CDS |
| CACTTGACAATGCTTTCACA+TGG | 0.508127 | 3.1:-4450419 | MS.gene84373:CDS |
| TTTGTAACTTGCAGTAGGCA+TGG | 0.514566 | 3.1:-4449968 | MS.gene84373:intron |
| TACATAAGAAATGATAGAGC+CGG | 0.520749 | 3.1:-4449095 | MS.gene84373:CDS |
| TTGTAACTTGCAGTAGGCAT+GGG | 0.521331 | 3.1:-4449967 | MS.gene84373:intron |
| ACATAAGAAATGATAGAGCC+GGG | 0.521389 | 3.1:-4449094 | MS.gene84373:CDS |
| ACTGGCTTGTTGCTGAAGGA+TGG | 0.521485 | 3.1:-4453263 | MS.gene84373:CDS |
| TGTGATCATGTCAAATCCAT+TGG | 0.526301 | 3.1:-4449240 | MS.gene84373:CDS |
| GAGCATAGTGGAACAAGAGA+TGG | 0.530600 | 3.1:-4449893 | MS.gene84373:CDS |
| TTTCTATTTAGGGGAATGGA+CGG | 0.536205 | 3.1:-4448645 | MS.gene84373:intron |
| CCCACCTAAGCCCTTTGTTG+GGG | 0.536909 | 3.1:-4450454 | MS.gene84373:CDS |
| CTGCCTTGTAATAGTTCTTG+AGG | 0.537261 | 3.1:+4449300 | None:intergenic |
| GCTTGTTGCTGAAGGATGGA+TGG | 0.547369 | 3.1:-4453259 | MS.gene84373:CDS |
| TTTCTTACCCTCATGACTTG+AGG | 0.552403 | 3.1:+4450664 | None:intergenic |
| ATATCTTTGCGCTGAAAATG+GGG | 0.554384 | 3.1:-4451637 | MS.gene84373:CDS |
| ACGGCTGAATGGAGCATACA+AGG | 0.556489 | 3.1:-4448626 | MS.gene84373:CDS |
| CAGTTATGTATGAATTCCAA+TGG | 0.561323 | 3.1:+4450559 | None:intergenic |
| ACAAATGTCAGAATAACCAT+TGG | 0.569248 | 3.1:-4448517 | MS.gene84373:CDS |
| GGAAACTGGCTTGTTGCTGA+AGG | 0.571457 | 3.1:-4453267 | MS.gene84373:CDS |
| GTGGGGTTAAATAATATAGG+AGG | 0.575488 | 3.1:-4451393 | MS.gene84373:CDS |
| GGGTTAAATAATATAGGAGG+AGG | 0.582810 | 3.1:-4451390 | MS.gene84373:CDS |
| ACTATTGTAAACACATTACA+AGG | 0.585005 | 3.1:-4450724 | MS.gene84373:CDS |
| GCATGGGATGAAAGTGATTG+TGG | 0.591242 | 3.1:-4449951 | MS.gene84373:CDS |
| AGAGAAACCACTAAGATCCC+CGG | 0.594540 | 3.1:+4449076 | None:intergenic |
| CCCCAACAAAGGGCTTAGGT+GGG | 0.603372 | 3.1:+4450454 | None:intergenic |
| ACCAGAAGGTGAACTACGGT+CGG | 0.604107 | 3.1:+4451596 | None:intergenic |
| ACAATTCCGTCAAAGCGAGA+AGG | 0.606902 | 3.1:+4453234 | None:intergenic |
| TATTGTAGTAATGCACATCA+AGG | 0.609097 | 3.1:+4449165 | None:intergenic |
| ATAGAGCTCCTCAAGTCATG+AGG | 0.611152 | 3.1:-4450672 | MS.gene84373:CDS |
| TAGCCTCAAGAACTATTACA+AGG | 0.620823 | 3.1:-4449303 | MS.gene84373:CDS |
| CAGTGAGGATACCTGTTGGA+TGG | 0.625186 | 3.1:-4450497 | MS.gene84373:CDS |
| CCCAACCAGAAGGTGAACTA+CGG | 0.625802 | 3.1:+4451592 | None:intergenic |
| CTAAATGTTTCCCAACCAGA+AGG | 0.632163 | 3.1:+4451582 | None:intergenic |
| CCACCTAAGCCCTTTGTTGG+GGG | 0.632438 | 3.1:-4450453 | MS.gene84373:CDS |
| TGAGGATACCTGTTGGATGG+TGG | 0.641335 | 3.1:-4450494 | MS.gene84373:CDS |
| ATAACCATTGGAGTCTCAAG+TGG | 0.641339 | 3.1:-4448505 | MS.gene84373:CDS |
| TCAGTGACTGCAGATTATGA+GGG | 0.647319 | 3.1:-4450787 | MS.gene84373:CDS |
| AGAGATGGATATACAGAATG+GGG | 0.649350 | 3.1:-4449878 | MS.gene84373:CDS |
| TAAGCAAACGAAAGAGAGTG+AGG | 0.651768 | 3.1:+4453306 | None:intergenic |
| AGGCAGCTTATGATGTTGTG+AGG | 0.665952 | 3.1:-4449283 | MS.gene84373:CDS |
| TAGAGCTCCTCAAGTCATGA+GGG | 0.665978 | 3.1:-4450671 | MS.gene84373:intron |
| TATCTTTGCGCTGAAAATGG+GGG | 0.665981 | 3.1:-4451636 | MS.gene84373:CDS |
| TCAACCACTTGAGACTCCAA+TGG | 0.670774 | 3.1:+4448501 | None:intergenic |
| GATGCAGTGAGGATACCTGT+TGG | 0.680380 | 3.1:-4450501 | MS.gene84373:CDS |
| TCTATGACAGAGACTGTCTG+TGG | 0.680638 | 3.1:+4449842 | None:intergenic |
| ACTTGACAATGCTTTCACAT+GGG | 0.683824 | 3.1:-4450418 | MS.gene84373:CDS |
| CATAAGAAATGATAGAGCCG+GGG | 0.686971 | 3.1:-4449093 | MS.gene84373:CDS |
| AAAATGGATTAGATGCAGTG+AGG | 0.737558 | 3.1:-4450512 | MS.gene84373:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATAAATTAATAT+GGG | + | chr3.1:4448651-4448670 | None:intergenic | 0.0% |
| !! | TATATATATATAAATTAATA+TGG | + | chr3.1:4448652-4448671 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATTA+GGG | - | chr3.1:4451554-4451573 | MS.gene84373:intron | 0.0% |
| !! | TTATTATTATTATTATTATT+AGG | - | chr3.1:4451553-4451572 | MS.gene84373:intron | 0.0% |
| !! | AATCATAAATTTATAAAGAA+AGG | + | chr3.1:4452301-4452320 | None:intergenic | 10.0% |
| !! | ATAAATTATAGTAACATTAA+TGG | - | chr3.1:4451706-4451725 | MS.gene84373:intron | 10.0% |
| !! | TTTGTTAAATATTATAAAGA+CGG | + | chr3.1:4448989-4449008 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTTACTGTTTA+TGG | + | chr3.1:4452083-4452102 | None:intergenic | 10.0% |
| !!! | ATTACATGATTTTATTAAAA+TGG | + | chr3.1:4450626-4450645 | None:intergenic | 10.0% |
| !! | AAAAGTTAACTTCTAATTAT+TGG | - | chr3.1:4450354-4450373 | MS.gene84373:intron | 15.0% |
| !! | AATAGACTATAAAAAATATG+GGG | + | chr3.1:4449951-4449970 | None:intergenic | 15.0% |
| !! | ATATATACTTCAAAGTTATA+AGG | - | chr3.1:4451796-4451815 | MS.gene84373:intron | 15.0% |
| !! | CAATAGACTATAAAAAATAT+GGG | + | chr3.1:4449952-4449971 | None:intergenic | 15.0% |
| !! | CCAAAAAATTATCAAAATAA+TGG | - | chr3.1:4452323-4452342 | MS.gene84373:intron | 15.0% |
| !! | GATTTAAATTCAAAGTTATA+AGG | - | chr3.1:4451756-4451775 | MS.gene84373:intron | 15.0% |
| !! | TCAAAGATCAAAATTTAATA+TGG | + | chr3.1:4450128-4450147 | None:intergenic | 15.0% |
| !!! | AATTTTACTTTTCTATTTAG+GGG | - | chr3.1:4453181-4453200 | MS.gene84373:intron | 15.0% |
| !!! | ACAATTTTACTTTTCTATTT+AGG | - | chr3.1:4453179-4453198 | MS.gene84373:intron | 15.0% |
| !!! | ATAATTTTAAAATGACATGA+CGG | - | chr3.1:4452149-4452168 | MS.gene84373:intron | 15.0% |
| !!! | ATATAATATAATAGTTTTGG+TGG | + | chr3.1:4448808-4448827 | None:intergenic | 15.0% |
| !!! | CAATTTTACTTTTCTATTTA+GGG | - | chr3.1:4453180-4453199 | MS.gene84373:intron | 15.0% |
| !!! | CATTTTGAAACAAAATTTTT+TGG | + | chr3.1:4449583-4449602 | None:intergenic | 15.0% |
| !!! | CCATTATTTTGATAATTTTT+TGG | + | chr3.1:4452326-4452345 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTAAAAGTTTATA+AGG | + | chr3.1:4449912-4449931 | None:intergenic | 15.0% |
| !!! | TGTTTTAATTTAGATTGTAA+AGG | - | chr3.1:4449821-4449840 | MS.gene84373:intron | 15.0% |
| !!! | TTTTTTTGTCAATAGTTTAA+TGG | + | chr3.1:4449278-4449297 | None:intergenic | 15.0% |
| !! | AAAAAAATCATATATACCGA+AGG | + | chr3.1:4448840-4448859 | None:intergenic | 20.0% |
| !! | AAATATATACGTACTAGAAA+AGG | - | chr3.1:4449018-4449037 | MS.gene84373:intron | 20.0% |
| !! | AAATTGAATGTTGAACTAAA+GGG | + | chr3.1:4451502-4451521 | None:intergenic | 20.0% |
| !! | AAGAAACATTTCAGATTATA+AGG | - | chr3.1:4450506-4450525 | MS.gene84373:CDS | 20.0% |
| !! | AGATATGTAAAGTAATATAG+AGG | + | chr3.1:4452365-4452384 | None:intergenic | 20.0% |
| !! | ATAGACTATAAAAAATATGG+GGG | + | chr3.1:4449950-4449969 | None:intergenic | 20.0% |
| !! | CCAATAGACTATAAAAAATA+TGG | + | chr3.1:4449953-4449972 | None:intergenic | 20.0% |
| !! | GAACAAAATTAAAGTTGTAT+TGG | + | chr3.1:4449623-4449642 | None:intergenic | 20.0% |
| !! | GTAACTTGATTTAAAAGAAT+TGG | + | chr3.1:4450687-4450706 | None:intergenic | 20.0% |
| !! | TAAATTGAATGTTGAACTAA+AGG | + | chr3.1:4451503-4451522 | None:intergenic | 20.0% |
| !! | TTTGTAATGCTTGATAAAAT+TGG | - | chr3.1:4449471-4449490 | MS.gene84373:intron | 20.0% |
| !!! | AAAAAATGTTAAAGTACTCA+AGG | - | chr3.1:4449121-4449140 | MS.gene84373:CDS | 20.0% |
| !!! | AAAAATGTTAAAGTACTCAA+GGG | - | chr3.1:4449122-4449141 | MS.gene84373:CDS | 20.0% |
| !!! | AGTACTTTAACATTTTTTTG+TGG | + | chr3.1:4449119-4449138 | None:intergenic | 20.0% |
| !!! | CCATATTTTTTATAGTCTAT+TGG | - | chr3.1:4449950-4449969 | MS.gene84373:CDS | 20.0% |
| !!! | GTATAATTTTAAGCCAAATA+TGG | - | chr3.1:4449367-4449386 | MS.gene84373:CDS | 20.0% |
| !!! | TACATTGTTTGATTTAAAAC+CGG | + | chr3.1:4450049-4450068 | None:intergenic | 20.0% |
| !!! | TTAAATAAAATTGGGTTAGA+GGG | - | chr3.1:4451675-4451694 | MS.gene84373:CDS | 20.0% |
| !!! | TTATAATCTGAAATGTTTCT+TGG | + | chr3.1:4450507-4450526 | None:intergenic | 20.0% |
| !!! | TTTAAATAAAATTGGGTTAG+AGG | - | chr3.1:4451674-4451693 | MS.gene84373:CDS | 20.0% |
| !!! | TTTAAGTTTGTCTTTTTCTT+GGG | - | chr3.1:4449695-4449714 | MS.gene84373:intron | 20.0% |
| !!! | TTTTGATCTTTGATGATTTT+AGG | - | chr3.1:4450135-4450154 | MS.gene84373:intron | 20.0% |
| !!! | TTTTTGTGAACTAAGTTTTA+AGG | + | chr3.1:4452391-4452410 | None:intergenic | 20.0% |
| ! | AAAGAAAGGTAAATGTTGAT+AGG | + | chr3.1:4452287-4452306 | None:intergenic | 25.0% |
| ! | AAATATATAGACCAACTAAC+AGG | + | chr3.1:4452825-4452844 | None:intergenic | 25.0% |
| ! | AAGAAAGGTAAATGTTGATA+GGG | + | chr3.1:4452286-4452305 | None:intergenic | 25.0% |
| ! | AATAATCAAATCCTGTTAGT+TGG | - | chr3.1:4452811-4452830 | MS.gene84373:intron | 25.0% |
| ! | AATAATGAACTTGCAAGATT+TGG | - | chr3.1:4451215-4451234 | MS.gene84373:intron | 25.0% |
| ! | ACATGATCACATAAGTATTT+GGG | + | chr3.1:4452586-4452605 | None:intergenic | 25.0% |
| ! | ACTATTGTAAACACATTACA+AGG | - | chr3.1:4451111-4451130 | MS.gene84373:intron | 25.0% |
| ! | ATTATATTATGAGTCTCCTT+CGG | - | chr3.1:4448821-4448840 | MS.gene84373:intron | 25.0% |
| ! | CTATTATTTGAGCTTCTTAT+TGG | - | chr3.1:4448489-4448508 | MS.gene84373:CDS | 25.0% |
| ! | GAAATGAATTCTACATAAAG+TGG | - | chr3.1:4450805-4450824 | MS.gene84373:CDS | 25.0% |
| ! | GAATACAATCAGTCTATTTA+CGG | + | chr3.1:4453024-4453043 | None:intergenic | 25.0% |
| ! | GGTAAGTAATGTATATATCT+AGG | - | chr3.1:4450276-4450295 | MS.gene84373:intron | 25.0% |
| ! | GTGTTCAACAAAAAATTTGT+GGG | - | chr3.1:4450424-4450443 | MS.gene84373:CDS | 25.0% |
| ! | TAGACAATGATGAATAAACA+AGG | + | chr3.1:4449347-4449366 | None:intergenic | 25.0% |
| ! | TCAAAGTTATAAGGTTAAAC+TGG | - | chr3.1:4451765-4451784 | MS.gene84373:intron | 25.0% |
| ! | TGTTCAACAAAAAATTTGTG+GGG | - | chr3.1:4450425-4450444 | MS.gene84373:CDS | 25.0% |
| ! | TTAGATTGTAAAGGTTGAAT+TGG | - | chr3.1:4449830-4449849 | MS.gene84373:CDS | 25.0% |
| ! | TTTATCTCATACTCACATTA+TGG | - | chr3.1:4452226-4452245 | MS.gene84373:intron | 25.0% |
| ! | TTTGTGGGGTTAAATAATAT+AGG | - | chr3.1:4450439-4450458 | MS.gene84373:CDS | 25.0% |
| !! | AGACTTTGAAAAAATGACAT+TGG | - | chr3.1:4450723-4450742 | MS.gene84373:CDS | 25.0% |
| !! | ATATATTTGTAACTTGCAGT+AGG | - | chr3.1:4451862-4451881 | MS.gene84373:intron | 25.0% |
| !! | GCATTACTACAATATGTTTT+GGG | - | chr3.1:4452679-4452698 | MS.gene84373:intron | 25.0% |
| !! | TAGGAATGTTTTCATTTCAA+TGG | + | chr3.1:4448941-4448960 | None:intergenic | 25.0% |
| !! | TGCATTACTACAATATGTTT+TGG | - | chr3.1:4452678-4452697 | MS.gene84373:intron | 25.0% |
| !!! | CTTTAAGTTTGTCTTTTTCT+TGG | - | chr3.1:4449694-4449713 | MS.gene84373:intron | 25.0% |
| !!! | GTAATCACATTTTTGTTTAG+TGG | + | chr3.1:4451833-4451852 | None:intergenic | 25.0% |
| AAACATGTTAAGAACTCAGT+TGG | - | chr3.1:4449044-4449063 | MS.gene84373:intron | 30.0% | |
| AAATATGGAAATAGACCAAG+TGG | - | chr3.1:4449382-4449401 | MS.gene84373:intron | 30.0% | |
| AAGAGATGGATATACAGAAT+GGG | - | chr3.1:4451956-4451975 | MS.gene84373:intron | 30.0% | |
| AAGTGACACTCATTATGAAA+CGG | + | chr3.1:4449557-4449576 | None:intergenic | 30.0% | |
| AATAAACTTCCATTTGTGCT+TGG | + | chr3.1:4453265-4453284 | None:intergenic | 30.0% | |
| AATCTTGTCTTGATTACACT+TGG | - | chr3.1:4450308-4450327 | MS.gene84373:intron | 30.0% | |
| AATTGTCAACAAAGATCTCT+TGG | - | chr3.1:4448618-4448637 | MS.gene84373:CDS | 30.0% | |
| ACAAATGTCAGAATAACCAT+TGG | - | chr3.1:4453318-4453337 | MS.gene84373:CDS | 30.0% | |
| ACTTGGTCTATTTCCATATT+TGG | + | chr3.1:4449383-4449402 | None:intergenic | 30.0% | |
| ACTTTGAATTTAAATCCGCT+TGG | + | chr3.1:4451752-4451771 | None:intergenic | 30.0% | |
| ATAGTCATGTGAAAAACTGA+TGG | + | chr3.1:4451096-4451115 | None:intergenic | 30.0% | |
| ATTGAACCTTCACACATATA+TGG | + | chr3.1:4451020-4451039 | None:intergenic | 30.0% | |
| CAATGATGAATAAACAAGGA+AGG | + | chr3.1:4449343-4449362 | None:intergenic | 30.0% | |
| CAGTTATGTATGAATTCCAA+TGG | + | chr3.1:4451279-4451298 | None:intergenic | 30.0% | |
| CATAATATATGCAAGACCTA+GGG | - | chr3.1:4449078-4449097 | MS.gene84373:CDS | 30.0% | |
| GACATGATCACATAAGTATT+TGG | + | chr3.1:4452587-4452606 | None:intergenic | 30.0% | |
| GCTCGTAGTAAAAAATCAAT+TGG | + | chr3.1:4449203-4449222 | None:intergenic | 30.0% | |
| GGTGTTCAACAAAAAATTTG+TGG | - | chr3.1:4450423-4450442 | MS.gene84373:CDS | 30.0% | |
| GTAATGCTTGATAAAATTGG+TGG | - | chr3.1:4449474-4449493 | MS.gene84373:intron | 30.0% | |
| TACATAAGAAATGATAGAGC+CGG | - | chr3.1:4452740-4452759 | MS.gene84373:intron | 30.0% | |
| TACCAACTTACTAATGGTTA+TGG | - | chr3.1:4451138-4451157 | MS.gene84373:intron | 30.0% | |
| TATTGTAGTAATGCACATCA+AGG | + | chr3.1:4452673-4452692 | None:intergenic | 30.0% | |
| TCATAGAGTTCTTAGCAAAA+AGG | - | chr3.1:4452009-4452028 | MS.gene84373:intron | 30.0% | |
| TTACTAAAATAGTCACCAAG+CGG | - | chr3.1:4451734-4451753 | MS.gene84373:intron | 30.0% | |
| TTCAGATTCATGTCACAAAA+TGG | - | chr3.1:4451307-4451326 | MS.gene84373:CDS | 30.0% | |
| ! | AAGAATTGGTCTCTTAAGAT+TGG | + | chr3.1:4450673-4450692 | None:intergenic | 30.0% |
| ! | AGTTGGAGTATTTATTGAGT+TGG | + | chr3.1:4449648-4449667 | None:intergenic | 30.0% |
| ! | ATTCGAATCAAAGCATCAAA+TGG | - | chr3.1:4450550-4450569 | MS.gene84373:CDS | 30.0% |
| ! | GAGCGTTTCTAACATTTTTA+CGG | - | chr3.1:4450913-4450932 | MS.gene84373:intron | 30.0% |
| ! | GTTGGAGTATTTATTGAGTT+GGG | + | chr3.1:4449647-4449666 | None:intergenic | 30.0% |
| ! | TAAAGAAATCAGTTTCGAGT+AGG | + | chr3.1:4452422-4452441 | None:intergenic | 30.0% |
| ! | TACTTTTCTATTTAGGGGAA+TGG | - | chr3.1:4453186-4453205 | MS.gene84373:intron | 30.0% |
| ! | TCTAATACTCGCACTTTTAT+CGG | + | chr3.1:4450852-4450871 | None:intergenic | 30.0% |
| ! | TCTCTATCTCTTTGTAGTTT+TGG | - | chr3.1:4452257-4452276 | MS.gene84373:intron | 30.0% |
| ! | TGACTCATCCTTCAATTTTA+GGG | - | chr3.1:4450402-4450421 | MS.gene84373:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr3.1:4449787-4449806 | MS.gene84373:intron | 30.0% |
| !! | ATGCTTTGATTCGAATTTTG+AGG | + | chr3.1:4450546-4450565 | None:intergenic | 30.0% |
| !! | GATCTTTGATGATTTTAGGA+TGG | - | chr3.1:4450139-4450158 | MS.gene84373:intron | 30.0% |
| !! | GGTTTAAATTGATTAGCTTG+AGG | + | chr3.1:4450605-4450624 | None:intergenic | 30.0% |
| !! | TAAATTGATTAGCTTGAGGA+TGG | + | chr3.1:4450601-4450620 | None:intergenic | 30.0% |
| !! | TGCTTTGATTCGAATTTTGA+GGG | + | chr3.1:4450545-4450564 | None:intergenic | 30.0% |
| !! | TTGAAGTTTGTTTTCTTTGC+AGG | - | chr3.1:4451252-4451271 | MS.gene84373:intron | 30.0% |
| !!! | ATCAAATGGTCTATTTTTGC+AGG | - | chr3.1:4450564-4450583 | MS.gene84373:CDS | 30.0% |
| !!! | ATGTTTTGGGACAAATTCAA+TGG | - | chr3.1:4452692-4452711 | MS.gene84373:intron | 30.0% |
| !!! | ATTGATTTTTTACTACGAGC+TGG | - | chr3.1:4449203-4449222 | MS.gene84373:CDS | 30.0% |
| !!! | ATTTTAAAATGACATGACGG+AGG | - | chr3.1:4452152-4452171 | MS.gene84373:intron | 30.0% |
| !!! | TCAAATGCTCTTAGTTTTGT+AGG | - | chr3.1:4452785-4452804 | MS.gene84373:intron | 30.0% |
| !!! | TTTTAAAATGACATGACGGA+GGG | - | chr3.1:4452153-4452172 | MS.gene84373:intron | 30.0% |
| AAATTGTGCGAGAGAAAAGT+TGG | + | chr3.1:4449665-4449684 | None:intergenic | 35.0% | |
| AAGATATGTCCAAGCACAAA+TGG | - | chr3.1:4453253-4453272 | MS.gene84373:CDS | 35.0% | |
| AAGCTGTGAATTTAGGAAAC+TGG | - | chr3.1:4448554-4448573 | MS.gene84373:CDS | 35.0% | |
| AATACTTGATCCTTCACACT+TGG | + | chr3.1:4452983-4453002 | None:intergenic | 35.0% | |
| ACATAAGAAATGATAGAGCC+GGG | - | chr3.1:4452741-4452760 | MS.gene84373:intron | 35.0% | |
| ACATATCTTTGCGCTGAAAA+TGG | - | chr3.1:4450196-4450215 | MS.gene84373:intron | 35.0% | |
| ACTCAAGGGAAAATGATGAT+AGG | - | chr3.1:4449136-4449155 | MS.gene84373:CDS | 35.0% | |
| ACTTGACAATGCTTTCACAT+GGG | - | chr3.1:4451417-4451436 | MS.gene84373:CDS | 35.0% | |
| AGAGATGGATATACAGAATG+GGG | - | chr3.1:4451957-4451976 | MS.gene84373:intron | 35.0% | |
| AGTAAAAAATCAATTGGCCG+TGG | + | chr3.1:4449197-4449216 | None:intergenic | 35.0% | |
| ATATCTTTGCGCTGAAAATG+GGG | - | chr3.1:4450198-4450217 | MS.gene84373:intron | 35.0% | |
| ATGTTAAGAACTCAGTTGGT+AGG | - | chr3.1:4449048-4449067 | MS.gene84373:intron | 35.0% | |
| CAAGAGATGGATATACAGAA+TGG | - | chr3.1:4451955-4451974 | MS.gene84373:intron | 35.0% | |
| CATATCTTTGCGCTGAAAAT+GGG | - | chr3.1:4450197-4450216 | MS.gene84373:intron | 35.0% | |
| CCAAGTGGATGAACTTATAA+CGG | - | chr3.1:4449397-4449416 | MS.gene84373:intron | 35.0% | |
| CTATCTTGATTGACACTTAG+TGG | + | chr3.1:4452515-4452534 | None:intergenic | 35.0% | |
| CTTATTCATTGTGACTCATG+CGG | - | chr3.1:4450769-4450788 | MS.gene84373:CDS | 35.0% | |
| CTTCTTCTCTCATTTGTCAA+AGG | - | chr3.1:4452632-4452651 | MS.gene84373:intron | 35.0% | |
| GAGAATTTGTATCTTGAACG+GGG | + | chr3.1:4449171-4449190 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGACCT+AGG | - | chr3.1:4449077-4449096 | MS.gene84373:CDS | 35.0% | |
| GCTTACAAAGCTGTGAATTT+AGG | - | chr3.1:4448547-4448566 | MS.gene84373:CDS | 35.0% | |
| GGAGAATACCAACTTACTAA+TGG | - | chr3.1:4451132-4451151 | MS.gene84373:intron | 35.0% | |
| GGAGAATTTGTATCTTGAAC+GGG | + | chr3.1:4449172-4449191 | None:intergenic | 35.0% | |
| GGGAGAATTTGTATCTTGAA+CGG | + | chr3.1:4449173-4449192 | None:intergenic | 35.0% | |
| GGGTTAAATAATATAGGAGG+AGG | - | chr3.1:4450445-4450464 | MS.gene84373:CDS | 35.0% | |
| GTGGGGTTAAATAATATAGG+AGG | - | chr3.1:4450442-4450461 | MS.gene84373:CDS | 35.0% | |
| GTGTGAAGGATCAAGTATTT+AGG | - | chr3.1:4452984-4453003 | MS.gene84373:intron | 35.0% | |
| GTTGAACACCCTAAAATTGA+AGG | + | chr3.1:4450413-4450432 | None:intergenic | 35.0% | |
| GTTTATTCTCGTGCAACATT+TGG | - | chr3.1:4453278-4453297 | MS.gene84373:CDS | 35.0% | |
| TAGCCTCAAGAACTATTACA+AGG | - | chr3.1:4452532-4452551 | MS.gene84373:intron | 35.0% | |
| TGAAATGTTTCTTGGTTGCT+AGG | + | chr3.1:4450499-4450518 | None:intergenic | 35.0% | |
| TGTGATCATGTCAAATCCAT+TGG | - | chr3.1:4452595-4452614 | MS.gene84373:intron | 35.0% | |
| TTATTCATTGTGACTCATGC+GGG | - | chr3.1:4450770-4450789 | MS.gene84373:CDS | 35.0% | |
| TTTCTATTTAGGGGAATGGA+CGG | - | chr3.1:4453190-4453209 | MS.gene84373:intron | 35.0% | |
| TTTGTGCTTGGACATATCTT+TGG | + | chr3.1:4453253-4453272 | None:intergenic | 35.0% | |
| ! | AGATTATGAGGGCACAAATT+GGG | - | chr3.1:4451059-4451078 | MS.gene84373:intron | 35.0% |
| ! | GTGACTCATCCTTCAATTTT+AGG | - | chr3.1:4450401-4450420 | MS.gene84373:intron | 35.0% |
| ! | TGTTAAGAACTCAGTTGGTA+GGG | - | chr3.1:4449049-4449068 | MS.gene84373:intron | 35.0% |
| ! | TTCTGGTTGGGAAACATTTA+GGG | - | chr3.1:4450255-4450274 | MS.gene84373:intron | 35.0% |
| ! | TTTGATTTAAAACCGGCCAT+GGG | + | chr3.1:4450042-4450061 | None:intergenic | 35.0% |
| !! | AAAATGGATTAGATGCAGTG+AGG | - | chr3.1:4451323-4451342 | MS.gene84373:CDS | 35.0% |
| !! | ATGTGTTTTGTTGTGTGGAA+TGG | + | chr3.1:4449317-4449336 | None:intergenic | 35.0% |
| !! | ATTAGCTTGAGGATGGATTA+AGG | + | chr3.1:4450594-4450613 | None:intergenic | 35.0% |
| !! | GCTTTGATTCGAATTTTGAG+GGG | + | chr3.1:4450544-4450563 | None:intergenic | 35.0% |
| !!! | ACATTTTTTTGTGGTGACAG+AGG | + | chr3.1:4449110-4449129 | None:intergenic | 35.0% |
| !!! | ATATGTTTTGTTTAGCCCCA+TGG | - | chr3.1:4450023-4450042 | MS.gene84373:intron | 35.0% |
| !!! | CAAAATGGTTTTGAGCATAG+TGG | - | chr3.1:4451930-4451949 | MS.gene84373:intron | 35.0% |
| !!! | GAGAAGAAGTTTTGAATCTG+TGG | + | chr3.1:4452621-4452640 | None:intergenic | 35.0% |
| AAAAAATCAATTGGCCGTGG+TGG | + | chr3.1:4449194-4449213 | None:intergenic | 40.0% | |
| AAAAATCAATTGGCCGTGGT+GGG | + | chr3.1:4449193-4449212 | None:intergenic | 40.0% | |
| AGATACAAATTCTCCCACCA+CGG | - | chr3.1:4449177-4449196 | MS.gene84373:CDS | 40.0% | |
| ATAACCATTGGAGTCTCAAG+TGG | - | chr3.1:4453330-4453349 | MS.gene84373:CDS | 40.0% | |
| ATCAGTGACTGCAGATTATG+AGG | - | chr3.1:4451047-4451066 | MS.gene84373:intron | 40.0% | |
| ATTCTCGTGCAACATTTGGA+TGG | - | chr3.1:4453282-4453301 | MS.gene84373:CDS | 40.0% | |
| CAAGGGAAAATGATGATAGG+TGG | - | chr3.1:4449139-4449158 | MS.gene84373:CDS | 40.0% | |
| CACTTGACAATGCTTTCACA+TGG | - | chr3.1:4451416-4451435 | MS.gene84373:CDS | 40.0% | |
| CATAAGAAATGATAGAGCCG+GGG | - | chr3.1:4452742-4452761 | MS.gene84373:intron | 40.0% | |
| CCGTTATAAGTTCATCCACT+TGG | + | chr3.1:4449400-4449419 | None:intergenic | 40.0% | |
| CCTTCACACATATATGGTCA+AGG | + | chr3.1:4451014-4451033 | None:intergenic | 40.0% | |
| CCTTGACCATATATGTGTGA+AGG | - | chr3.1:4451011-4451030 | MS.gene84373:intron | 40.0% | |
| CGCCATAACCATTAGTAAGT+TGG | + | chr3.1:4451143-4451162 | None:intergenic | 40.0% | |
| CTAAATGTTTCCCAACCAGA+AGG | + | chr3.1:4450256-4450275 | None:intergenic | 40.0% | |
| CTCAAGTGGTTGATCGAAAA+TGG | - | chr3.1:4453344-4453363 | MS.gene84373:CDS | 40.0% | |
| CTGCCTTGTAATAGTTCTTG+AGG | + | chr3.1:4452538-4452557 | None:intergenic | 40.0% | |
| GACACTCATTATGAAACGGA+GGG | + | chr3.1:4449553-4449572 | None:intergenic | 40.0% | |
| GCAGTTGAAGGTTCTCAAAA+TGG | - | chr3.1:4451915-4451934 | MS.gene84373:intron | 40.0% | |
| GTTGCTAGGTGAATCTGAAA+AGG | + | chr3.1:4450485-4450504 | None:intergenic | 40.0% | |
| GTTGTGTGGAATGGAACATT+GGG | + | chr3.1:4449308-4449327 | None:intergenic | 40.0% | |
| TAAGCAAACGAAAGAGAGTG+AGG | + | chr3.1:4448532-4448551 | None:intergenic | 40.0% | |
| TATCTTTGCGCTGAAAATGG+GGG | - | chr3.1:4450199-4450218 | MS.gene84373:intron | 40.0% | |
| TCAGTGACTGCAGATTATGA+GGG | - | chr3.1:4451048-4451067 | MS.gene84373:intron | 40.0% | |
| TGACACTCATTATGAAACGG+AGG | + | chr3.1:4449554-4449573 | None:intergenic | 40.0% | |
| TGGACAAAAAGTTTGCCCAT+GGG | - | chr3.1:4449970-4449989 | MS.gene84373:intron | 40.0% | |
| TGTTGTGTGGAATGGAACAT+TGG | + | chr3.1:4449309-4449328 | None:intergenic | 40.0% | |
| TTCTCGTGCAACATTTGGAT+GGG | - | chr3.1:4453283-4453302 | MS.gene84373:CDS | 40.0% | |
| TTGGACAAAAAGTTTGCCCA+TGG | - | chr3.1:4449969-4449988 | MS.gene84373:intron | 40.0% | |
| TTGTCTCTCACTAAACCCAT+GGG | + | chr3.1:4449988-4450007 | None:intergenic | 40.0% | |
| TTTCAGCGCAAAGATATGTC+TGG | + | chr3.1:4450195-4450214 | None:intergenic | 40.0% | |
| TTTCTTACCCTCATGACTTG+AGG | + | chr3.1:4451174-4451193 | None:intergenic | 40.0% | |
| TTTGTCTCTCACTAAACCCA+TGG | + | chr3.1:4449989-4450008 | None:intergenic | 40.0% | |
| ! | CAGATTATGAGGGCACAAAT+TGG | - | chr3.1:4451058-4451077 | MS.gene84373:intron | 40.0% |
| ! | CTTCTGGTTGGGAAACATTT+AGG | - | chr3.1:4450254-4450273 | MS.gene84373:intron | 40.0% |
| ! | GTTTGATTTAAAACCGGCCA+TGG | + | chr3.1:4450043-4450062 | None:intergenic | 40.0% |
| ! | TGTTTTCTTTGCAGGACCAT+TGG | - | chr3.1:4451260-4451279 | MS.gene84373:intron | 40.0% |
| ! | TTGATTTAAAACCGGCCATG+GGG | + | chr3.1:4450041-4450060 | None:intergenic | 40.0% |
| ! | TTGTAACTTGCAGTAGGCAT+GGG | - | chr3.1:4451868-4451887 | MS.gene84373:intron | 40.0% |
| ! | TTTGTAACTTGCAGTAGGCA+TGG | - | chr3.1:4451867-4451886 | MS.gene84373:intron | 40.0% |
| !! | CAACATTTGGATGGGCTTTT+TGG | - | chr3.1:4453291-4453310 | MS.gene84373:CDS | 40.0% |
| !! | GGTGTATGTGTTTTGTTGTG+TGG | + | chr3.1:4449322-4449341 | None:intergenic | 40.0% |
| !! | TATTGGCTCATTTGCAGCTT+TGG | - | chr3.1:4450371-4450390 | MS.gene84373:intron | 40.0% |
| !!! | AGTTTTGAATCTGTGGCCAA+TGG | + | chr3.1:4452614-4452633 | None:intergenic | 40.0% |
| ACAATTCCGTCAAAGCGAGA+AGG | + | chr3.1:4448604-4448623 | None:intergenic | 45.0% | |
| ACGTGTCTGTCTATCGTAGT+AGG | + | chr3.1:4448960-4448979 | None:intergenic | 45.0% | |
| AGAGAAACCACTAAGATCCC+CGG | + | chr3.1:4452762-4452781 | None:intergenic | 45.0% | |
| AGGCAGCTTATGATGTTGTG+AGG | - | chr3.1:4452552-4452571 | MS.gene84373:intron | 45.0% | |
| ATAGAGCTCCTCAAGTCATG+AGG | - | chr3.1:4451163-4451182 | MS.gene84373:intron | 45.0% | |
| ATGGAACCTTCTCGCTTTGA+CGG | - | chr3.1:4448595-4448614 | MS.gene84373:CDS | 45.0% | |
| CGCTCTCTTTCTAATACTCG+CGG | + | chr3.1:4450898-4450917 | None:intergenic | 45.0% | |
| GCATGGGATGAAAGTGATTG+TGG | - | chr3.1:4451884-4451903 | MS.gene84373:intron | 45.0% | |
| GTGAATAAGTGAGCTGTCTG+AGG | + | chr3.1:4449235-4449254 | None:intergenic | 45.0% | |
| TAGAGCTCCTCAAGTCATGA+GGG | - | chr3.1:4451164-4451183 | MS.gene84373:intron | 45.0% | |
| TCAACCACTTGAGACTCCAA+TGG | + | chr3.1:4453337-4453356 | None:intergenic | 45.0% | |
| TCTATGACAGAGACTGTCTG+TGG | + | chr3.1:4451996-4452015 | None:intergenic | 45.0% | |
| ! | GAGCATAGTGGAACAAGAGA+TGG | - | chr3.1:4451942-4451961 | MS.gene84373:intron | 45.0% |
| !! | AATAAATAGTAAAAAATTAT+TGG | - | chr3.1:4452108-4452127 | MS.gene84373:intron | 5.0% |
| !!! | ATAATATAATATAATAGTTT+TGG | + | chr3.1:4448811-4448830 | None:intergenic | 5.0% |
| !!! | TAAAAGTTTTAAATAAAATT+GGG | - | chr3.1:4451667-4451686 | MS.gene84373:CDS | 5.0% |
| !!! | TTAAAAGTTTTAAATAAAAT+TGG | - | chr3.1:4451666-4451685 | MS.gene84373:CDS | 5.0% |
| AACCCACCTAAGCCCTTTGT+TGG | - | chr3.1:4451379-4451398 | MS.gene84373:CDS | 50.0% | |
| ACCAGAAGGTGAACTACGGT+CGG | + | chr3.1:4450242-4450261 | None:intergenic | 50.0% | |
| ACCCACCTAAGCCCTTTGTT+GGG | - | chr3.1:4451380-4451399 | MS.gene84373:CDS | 50.0% | |
| ACCGTAGTTCACCTTCTGGT+TGG | - | chr3.1:4450242-4450261 | MS.gene84373:intron | 50.0% | |
| ACGGCTGAATGGAGCATACA+AGG | - | chr3.1:4453209-4453228 | MS.gene84373:intron | 50.0% | |
| CAGTGAGGATACCTGTTGGA+TGG | - | chr3.1:4451338-4451357 | MS.gene84373:CDS | 50.0% | |
| CCCAACCAGAAGGTGAACTA+CGG | + | chr3.1:4450246-4450265 | None:intergenic | 50.0% | |
| GATGCAGTGAGGATACCTGT+TGG | - | chr3.1:4451334-4451353 | MS.gene84373:CDS | 50.0% | |
| GTCGCAGTTACCAAGTGTGA+AGG | - | chr3.1:4452970-4452989 | MS.gene84373:intron | 50.0% | |
| GTGACAGAGGTTTGAACCCT+AGG | + | chr3.1:4449097-4449116 | None:intergenic | 50.0% | |
| GTGGACTTGCATGCAGTTGA+AGG | - | chr3.1:4451903-4451922 | MS.gene84373:intron | 50.0% | |
| TGAGCTATCCACCATCCAAC+AGG | + | chr3.1:4451352-4451371 | None:intergenic | 50.0% | |
| TGAGGATACCTGTTGGATGG+TGG | - | chr3.1:4451341-4451360 | MS.gene84373:CDS | 50.0% | |
| ! | ACAAAGGGCTTAGGTGGGTT+TGG | + | chr3.1:4451379-4451398 | None:intergenic | 50.0% |
| ! | CCGTAGTTCACCTTCTGGTT+GGG | - | chr3.1:4450243-4450262 | MS.gene84373:intron | 50.0% |
| ! | GCTTGTTGCTGAAGGATGGA+TGG | - | chr3.1:4448576-4448595 | MS.gene84373:CDS | 50.0% |
| ! | TGGCTCATTTGCAGCTTTGG+AGG | - | chr3.1:4450374-4450393 | MS.gene84373:intron | 50.0% |
| !! | ACTGGCTTGTTGCTGAAGGA+TGG | - | chr3.1:4448572-4448591 | MS.gene84373:CDS | 50.0% |
| !! | GGAAACTGGCTTGTTGCTGA+AGG | - | chr3.1:4448568-4448587 | MS.gene84373:CDS | 50.0% |
| !! | GGCTCATTTGCAGCTTTGGA+GGG | - | chr3.1:4450375-4450394 | MS.gene84373:intron | 50.0% |
| !!! | GTTTTGTTTAGCCCCATGGC+CGG | - | chr3.1:4450027-4450046 | MS.gene84373:intron | 50.0% |
| CCACCTAAGCCCTTTGTTGG+GGG | - | chr3.1:4451382-4451401 | MS.gene84373:CDS | 55.0% | |
| CCCACCTAAGCCCTTTGTTG+GGG | - | chr3.1:4451381-4451400 | MS.gene84373:CDS | 55.0% | |
| CCCCAACAAAGGGCTTAGGT+GGG | + | chr3.1:4451384-4451403 | None:intergenic | 55.0% | |
| CTTTGCGCTGAAAATGGGGG+AGG | - | chr3.1:4450202-4450221 | MS.gene84373:intron | 55.0% | |
| GATAGAGCCGGGGATCTTAG+TGG | - | chr3.1:4452752-4452771 | MS.gene84373:intron | 55.0% | |
| GCCAAAGCTCCCCCAACAAA+GGG | + | chr3.1:4451394-4451413 | None:intergenic | 55.0% | |
| TAGGGGAATGGACGGCTGAA+TGG | - | chr3.1:4453198-4453217 | MS.gene84373:intron | 55.0% | |
| TGCCAAAGCTCCCCCAACAA+AGG | + | chr3.1:4451395-4451414 | None:intergenic | 55.0% | |
| CCCCCAACAAAGGGCTTAGG+TGG | + | chr3.1:4451385-4451404 | None:intergenic | 60.0% | |
| GCCCTTTGTTGGGGGAGCTT+TGG | - | chr3.1:4451390-4451409 | MS.gene84373:CDS | 60.0% | |
| GCCGACCGTAGTTCACCTTC+TGG | - | chr3.1:4450238-4450257 | MS.gene84373:intron | 60.0% | |
| GCTCCCCCAACAAAGGGCTT+AGG | + | chr3.1:4451388-4451407 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 4448475 | 4453382 | 4448475 | ID=MS.gene84373 |
| chr3.1 | mRNA | 4448475 | 4453382 | 4448475 | ID=MS.gene84373.t1;Parent=MS.gene84373 |
| chr3.1 | exon | 4453218 | 4453382 | 4453218 | ID=MS.gene84373.t1.exon1;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4453218 | 4453382 | 4453218 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4451581 | 4451700 | 4451581 | ID=MS.gene84373.t1.exon2;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4451581 | 4451700 | 4451581 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4451272 | 4451469 | 4451272 | ID=MS.gene84373.t1.exon3;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4451272 | 4451469 | 4451272 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4450672 | 4450824 | 4450672 | ID=MS.gene84373.t1.exon4;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4450672 | 4450824 | 4450672 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4450414 | 4450583 | 4450414 | ID=MS.gene84373.t1.exon5;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4450414 | 4450583 | 4450414 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4449827 | 4449976 | 4449827 | ID=MS.gene84373.t1.exon6;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4449827 | 4449976 | 4449827 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4449051 | 4449391 | 4449051 | ID=MS.gene84373.t1.exon7;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4449051 | 4449391 | 4449051 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| chr3.1 | exon | 4448475 | 4448656 | 4448475 | ID=MS.gene84373.t1.exon8;Parent=MS.gene84373.t1 |
| chr3.1 | CDS | 4448475 | 4448656 | 4448475 | ID=cds.MS.gene84373.t1;Parent=MS.gene84373.t1 |
| Gene Sequence |
| Protein sequence |
