AlfalfaGEDB | MS.gene84931

M. sativa cultivar XinJiangDaYe / MS.gene84931

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84931.t1	XP_013443310.1	96.2	339	13	0	1	339	180	518	6.90E-191	676.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84931.t1	Q42716	49.1	338	156	3	1	336	177	500	4.3e-93	342.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84931.t1	A0A072TUW4	96.2	339	13	0	1	339	180	518	5.0e-191	676.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049669	MS.gene84931	0.80813	3.60E-50	-1.69E-46
MS.gene050021	MS.gene84931	0.808816	2.57E-50	-1.69E-46
MS.gene050680	MS.gene84931	0.820021	8.55E-53	-1.69E-46
MS.gene050750	MS.gene84931	0.854215	1.43E-61	-1.69E-46
MS.gene050820	MS.gene84931	0.801565	8.48E-49	-1.69E-46
MS.gene050953	MS.gene84931	0.842399	2.65E-58	-1.69E-46
MS.gene051265	MS.gene84931	0.80778	4.28E-50	-1.69E-46
MS.gene052176	MS.gene84931	0.80017	1.63E-48	-1.69E-46
MS.gene052190	MS.gene84931	0.824849	6.46E-54	-1.69E-46
MS.gene052333	MS.gene84931	0.806058	9.89E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84931.t1	MTR_0022s0290	96.165	339	13	0	1	339	180	518	0.0	683
MS.gene84931.t1	MTR_4g089030	65.192	339	110	5	1	338	186	517	5.00e-154	442
MS.gene84931.t1	MTR_4g089025	62.242	339	119	4	1	338	188	518	2.02e-150	433
MS.gene84931.t1	MTR_4g104610	61.584	341	117	5	1	336	165	496	2.20e-149	430
MS.gene84931.t1	MTR_4g089020	61.062	339	124	4	1	339	164	494	2.10e-148	427
MS.gene84931.t1	MTR_4g104540	58.457	337	128	3	2	338	105	429	4.31e-145	417
MS.gene84931.t1	MTR_4g089055	62.500	336	118	4	1	336	186	513	6.28e-144	417
MS.gene84931.t1	MTR_4g104550	56.213	338	139	3	1	338	165	493	7.81e-139	403
MS.gene84931.t1	MTR_3g076530	42.522	341	181	3	1	338	175	503	3.45e-98	300
MS.gene84931.t1	MTR_4g104660	42.553	329	181	3	1	328	183	504	6.91e-95	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84931.t1	AT3G48310	47.774	337	159	4	1	336	167	487	5.35e-109	327
MS.gene84931.t1	AT3G48270	46.884	337	162	5	1	336	166	486	1.51e-107	323
MS.gene84931.t1	AT3G48280	44.118	340	174	4	1	339	165	489	3.17e-104	315
MS.gene84931.t1	AT3G48290	46.450	338	162	5	1	336	168	488	1.67e-101	307
MS.gene84931.t1	AT4G13310	45.562	338	169	4	1	336	171	495	6.47e-100	304
MS.gene84931.t1	AT3G48300	46.154	338	159	6	1	336	164	480	7.26e-100	303
MS.gene84931.t1	AT3G48300	46.154	338	159	6	1	336	166	482	7.69e-100	303
MS.gene84931.t1	AT3G48320	47.633	338	158	5	1	336	167	487	4.17e-99	301
MS.gene84931.t1	AT3G48290	43.132	364	162	6	1	336	168	514	9.64e-96	293
MS.gene84931.t1	AT4G13290	44.083	338	166	5	1	336	172	488	1.13e-94	290

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Find 66 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGAAATTGATATTAA+AGG	0.174597	6.4:+33846209	MS.gene84931:CDS
AACAAATTAGTTAAGTTCAT+TGG	0.366524	6.4:-33844743	None:intergenic
AACTAATGATATTGTGTGTA+GGG	0.464049	6.4:+33844775	MS.gene84931:CDS
AAGGGAGGCAGTGGCTGAGT+TGG	0.494821	6.4:+33844841	MS.gene84931:CDS
AATCATCAAGGCTTTGATCA+TGG	0.520063	6.4:+33845132	MS.gene84931:CDS
ACAGCATGAAGTGAGAAATG+TGG	0.674695	6.4:+33845938	MS.gene84931:CDS
ACCATAGCAAAACTTATTCC+AGG	0.467085	6.4:-33846278	None:intergenic
AGATATAGTGATGAAGGTGA+AGG	0.585028	6.4:+33844812	MS.gene84931:CDS
AGGAAAACTAAGGGAGGCAG+TGG	0.588893	6.4:+33844832	MS.gene84931:CDS
AGGTGAAGGAAAACTAAGGG+AGG	0.715037	6.4:+33844826	MS.gene84931:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACTAATGATATTGTGTGT+AGG	+	chr6.4:33844774-33844793	MS.gene84931:CDS	30.0%
CATCACCTTTATTAATTCCA+AGG	+	chr6.4:33846051-33846070	MS.gene84931:CDS	30.0%
CTTGGAATTAATAAAGGTGA+TGG	-	chr6.4:33846053-33846072	None:intergenic	30.0%
GATTCCCTTGGAATTAATAA+AGG	-	chr6.4:33846059-33846078	None:intergenic	30.0%
GATTGATAGAACAATCATCA+AGG	+	chr6.4:33845120-33845139	MS.gene84931:CDS	30.0%
GGAACACAAGTAATAGTTAA+TGG	+	chr6.4:33846119-33846138	MS.gene84931:CDS	30.0%
TGTTCTATCAATCTCAAATC+CGG	-	chr6.4:33845113-33845132	None:intergenic	30.0%
ACCATAGCAAAACTTATTCC+AGG	-	chr6.4:33846281-33846300	None:intergenic	35.0%
AGATATAGTGATGAAGGTGA+AGG	+	chr6.4:33844812-33844831	MS.gene84931:CDS	35.0%
ATGAAGGTGAAGGAAAACTA+AGG	+	chr6.4:33844822-33844841	MS.gene84931:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	33844746	33846457	33844746	ID=MS.gene84931
chr6.4	mRNA	33844746	33846457	33844746	ID=MS.gene84931.t1;Parent=MS.gene84931
chr6.4	exon	33844746	33845153	33844746	ID=MS.gene84931.t1.exon1;Parent=MS.gene84931.t1
chr6.4	CDS	33844746	33845153	33844746	ID=cds.MS.gene84931.t1;Parent=MS.gene84931.t1
chr6.4	exon	33845846	33846457	33845846	ID=MS.gene84931.t1.exon2;Parent=MS.gene84931.t1
chr6.4	CDS	33845846	33846457	33845846	ID=cds.MS.gene84931.t1;Parent=MS.gene84931.t1

Gene Sequence

>MS.gene84931

ATGAACTTAACTAATTTGTTATGTGAAACAACTAATGATATTGTGTGTAGGGCAACACTTGGAAAGAGATATAGTGATGAAGGTGAAGGAAAACTAAGGGAGGCAGTGGCTGAGTTGGAAGTGTTGTTAGGTGCTTGTGTTTTAGGGGATTATGTACCTTGGCTTGATTGGTTAGGAAAAGTTAATGGTTTGTATAGTAGAGCTAAAAGAGTGGCTAAGGTATTTGATGAGTTTTTGGATGAAGTTGTGGAGGAGCATGTTAGTAGTTGGTTGGAGAGAAGTAAAAAGGGACTTGGTGATTTTGACCATGAAGGACAAAATGATTTTGTGGATGTTTTGCTTTGGATCCAAAGGACAAATGCCACCGGATTTGAGATTGATAGAACAATCATCAAGGCTTTGATCATGGTAAGAATTAATACATCTTCAAGATTGTAGGACTTGAATAATCACTTATCCATAACATTAAACAATTCGATTATCAGATCAAGATCAGACGATCAGTATTTTTAATTCAGTTAATTAATTCAGAAATATGAAACTAAAACCTAAACAATCTTATTTTGATGTAACGATTTTGATTAGCAACATGATGTGAATGCAGGAATCCAAATCTCTTGATTATTTATACTTATATTTGCAATAGTCCTCCTTAAACCTAAAACCATATGTAGTTTTGACTTCTTAATGTTTGAAACTTATGTATAATACTTTTATTATTTGATGAATTGATTGAGTTTTTATTTGTTTTAGCAACGTTCTTATTCTTTTATTTGAGTGTCTTTTCGAAATCTTTTTTATTTTCCACTCTAGTATTTTTGTAATATTTTTTTGGAATAATTATATTTTTGTGATTAACAAGTCACAAAACTATTATTATTATTTTTTATTCCTTTTGCTCAAAAACTTTTTAAATATTCCTCAAATTTTCTATTATTTTTATAAATTAATCCGTTTCTAGTTAGGAATCCAACATATAACTAACAATTCCAAAAGAACAACAAAGCCATAGGTAATTTTTTTTTTTTAAATCTATTTGATAGGATACAAAAATTGATGCTGATAATGTAATTGCAAAAAGTTGAATTTTTGTTCTTTAGGATATGTTTGGTGCAGGTACAGACACTACCCTTGCAGTCTTAGAATGGGCAATGACAGAACTCCTAAGACACCCAAATGTAATGCAAAAACTACAGCATGAAGTGAGAAATGTGGTTAACCAAAACACTCACATAACTGAGCAAGATTTAAACAAAATGGATTACTTAAAAGCAGTGATCAAAGAAACTCTTAGACTACACCCACCATCACCTTTATTAATTCCAAGGGAATCAATGCAAGACACAAAAATTATGGGCTATGACATTTCAGCTGGAACACAAGTAATAGTTAATGGATATGCAATTTCAACTGATTCTTGTTATTGGGATCAACCACTAGAATTTCAACCAGAGAGATTCTTGAAATGTGAAATTGATATTAAAGGACATGATTTTGATTTGATTCCTTTTGGTGCTGGTAGGAGGGGATGTCCTGGAATAAGTTTTGCTATGGTTGTTAATGAGTTGGTTTTAGCTAATCTTGTTCATCAATTTGATTGGTCATTGCCTAGTGGAGTGGAGAGGGATCAAAGTTTGGACATGTCTGAAACTACTGGGTTAACTATTCATAGAAAATTTCATCTTTTGGCTGTTGCATCTCCACATATATAA

Protein sequence

>MS.gene84931.t1

MNLTNLLCETTNDIVCRATLGKRYSDEGEGKLREAVAELEVLLGACVLGDYVPWLDWLGKVNGLYSRAKRVAKVFDEFLDEVVEEHVSSWLERSKKGLGDFDHEGQNDFVDVLLWIQRTNATGFEIDRTIIKALIMDMFGAGTDTTLAVLEWAMTELLRHPNVMQKLQHEVRNVVNQNTHITEQDLNKMDYLKAVIKETLRLHPPSPLLIPRESMQDTKIMGYDISAGTQVIVNGYAISTDSCYWDQPLEFQPERFLKCEIDIKGHDFDLIPFGAGRRGCPGISFAMVVNELVLANLVHQFDWSLPSGVERDQSLDMSETTGLTIHRKFHLLAVASPHI