Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85485.t1 | XP_003598672.1 | 93.2 | 191 | 13 | 0 | 1 | 191 | 1 | 191 | 3.60E-96 | 360.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85485.t1 | Q9LK88 | 69.0 | 187 | 58 | 0 | 4 | 190 | 10 | 196 | 9.0e-72 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85485.t1 | G7IW34 | 93.2 | 191 | 13 | 0 | 1 | 191 | 1 | 191 | 2.6e-96 | 360.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene85485 | 0.835194 | 1.93E-56 | -1.69E-46 |
| MS.gene050095 | MS.gene85485 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene85485 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene051131 | MS.gene85485 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene85485 | 0.832096 | 1.15E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene85485 | 0.828413 | 9.12E-55 | -1.69E-46 |
| MS.gene053031 | MS.gene85485 | 0.801206 | 1.00E-48 | -1.69E-46 |
| MS.gene053033 | MS.gene85485 | 0.808531 | 2.96E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene85485 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene053887 | MS.gene85485 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene85485 | 0.860512 | 1.96E-63 | -1.69E-46 |
| MS.gene054147 | MS.gene85485 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene85485 | 0.823226 | 1.55E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene85485 | 0.805596 | 1.24E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene85485 | 0.818488 | 1.91E-52 | -1.69E-46 |
| MS.gene055601 | MS.gene85485 | 0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene056076 | MS.gene85485 | 0.812503 | 4.10E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene85485 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene85485 | 0.82234 | 2.50E-53 | -1.69E-46 |
| MS.gene057547 | MS.gene85485 | 0.817183 | 3.76E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene85485 | 0.800084 | 1.70E-48 | -1.69E-46 |
| MS.gene059953 | MS.gene85485 | 0.825658 | 4.16E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene85485 | 0.823051 | 1.71E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene85485 | 0.816666 | 4.92E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85485.t1 | MTR_3g019090 | 93.194 | 191 | 13 | 0 | 1 | 191 | 1 | 191 | 1.72e-133 | 372 |
| MS.gene85485.t1 | MTR_3g019160 | 76.440 | 191 | 45 | 0 | 1 | 191 | 1 | 191 | 6.40e-108 | 307 |
| MS.gene85485.t1 | MTR_3g019120 | 77.320 | 194 | 37 | 2 | 1 | 189 | 1 | 192 | 4.19e-105 | 307 |
| MS.gene85485.t1 | MTR_3g019120 | 77.320 | 194 | 37 | 2 | 1 | 189 | 1 | 192 | 1.17e-103 | 307 |
| MS.gene85485.t1 | MTR_3g019150 | 72.251 | 191 | 52 | 1 | 1 | 191 | 1 | 190 | 1.37e-102 | 293 |
| MS.gene85485.t1 | MTR_8g039090 | 69.474 | 190 | 58 | 0 | 2 | 191 | 3 | 192 | 2.54e-101 | 290 |
| MS.gene85485.t1 | MTR_3g019090 | 95.070 | 142 | 7 | 0 | 50 | 191 | 1 | 142 | 1.28e-99 | 284 |
| MS.gene85485.t1 | MTR_3g019120 | 83.784 | 148 | 24 | 0 | 42 | 189 | 5 | 152 | 5.75e-88 | 266 |
| MS.gene85485.t1 | MTR_3g019150 | 71.287 | 101 | 29 | 0 | 91 | 191 | 34 | 134 | 6.55e-51 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85485.t1 | AT3G27890 | 68.984 | 187 | 58 | 0 | 4 | 190 | 10 | 196 | 7.60e-92 | 266 |
Find 42 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTGCCTTGAAGTTTA+AGG | 0.117582 | 3.4:+12585143 | None:intergenic |
| AATCGACTATATTGATATTT+CGG | 0.315855 | 3.4:-12585667 | MS.gene85485:CDS |
| AAATATCAATATAGTCGATT+TGG | 0.331349 | 3.4:+12585670 | None:intergenic |
| ATTTCTGCCTTGAAGTTTAA+GGG | 0.343293 | 3.4:+12585144 | None:intergenic |
| AACATCATCTTCGCCAAATC+GGG | 0.347815 | 3.4:-12585315 | MS.gene85485:CDS |
| CATACTGGCCTCATTCGTTA+TGG | 0.349761 | 3.4:-12586264 | MS.gene85485:intron |
| CGCTAAAGAATGCGATTGAT+TGG | 0.357043 | 3.4:-12585420 | MS.gene85485:CDS |
| GGTTTACCAGCCCATGCATT+TGG | 0.360432 | 3.4:+12585385 | None:intergenic |
| ATTAAGATTGTTGCTCTCTC+TGG | 0.362873 | 3.4:-12586309 | MS.gene85485:CDS |
| CAACATCATCTTCGCCAAAT+CGG | 0.377634 | 3.4:-12585316 | MS.gene85485:CDS |
| GGCTCCTCCAACACTTACTA+TGG | 0.391189 | 3.4:+12585357 | None:intergenic |
| TATCAAGGAAAACCCCGATT+TGG | 0.397239 | 3.4:+12585302 | None:intergenic |
| CTGGATGCTTAAATACATCT+AGG | 0.405336 | 3.4:+12585251 | None:intergenic |
| CGAAAAGCTTCAACTTCAGC+TGG | 0.413282 | 3.4:+12585600 | None:intergenic |
| GAGACAGAATAATTATATTC+AGG | 0.417383 | 3.4:+12585537 | None:intergenic |
| GTAAGTGTTGGAGGAGCCTT+TGG | 0.428342 | 3.4:-12585352 | MS.gene85485:CDS |
| TTTAAGGGTAAATTCCTTCA+AGG | 0.429920 | 3.4:+12585159 | None:intergenic |
| TGAAGAGATCAAGAATAGAT+TGG | 0.437949 | 3.4:-12585197 | MS.gene85485:CDS |
| GAATATAATTATTCTGTCTC+AGG | 0.442769 | 3.4:-12585534 | MS.gene85485:intron |
| GAAAGTTCTTGTGTCCTTGA+AGG | 0.447891 | 3.4:-12585173 | MS.gene85485:CDS |
| TATTAATGAAATGAATATCA+AGG | 0.449069 | 3.4:+12585287 | None:intergenic |
| GCTAAAGAATGCGATTGATT+GGG | 0.485585 | 3.4:-12585419 | MS.gene85485:CDS |
| GAATTTACCCTTAAACTTCA+AGG | 0.490730 | 3.4:-12585151 | MS.gene85485:CDS |
| TTACCAGCCCATGCATTTGG+TGG | 0.503471 | 3.4:+12585388 | None:intergenic |
| AACTCTGATCTTGAGAAAGA+AGG | 0.504804 | 3.4:-12585630 | MS.gene85485:CDS |
| CAATCAATCGCATTCTTTAG+CGG | 0.506871 | 3.4:+12585421 | None:intergenic |
| GTTGGAGGAGCCTTTGGTGG+AGG | 0.513008 | 3.4:-12585346 | MS.gene85485:CDS |
| CATCAAGACCACCAAATGCA+TGG | 0.519270 | 3.4:-12585396 | MS.gene85485:CDS |
| GTAAATTACCATAACGAATG+AGG | 0.533048 | 3.4:+12586256 | None:intergenic |
| AGTGTTGGAGGAGCCTTTGG+TGG | 0.533206 | 3.4:-12585349 | MS.gene85485:CDS |
| TCAAGATCAGAGTTCAACAT+TGG | 0.545865 | 3.4:+12585639 | None:intergenic |
| GCTGCCATAGTAAGTGTTGG+AGG | 0.554560 | 3.4:-12585361 | MS.gene85485:CDS |
| AGACCACCAAATGCATGGGC+TGG | 0.561726 | 3.4:-12585391 | MS.gene85485:CDS |
| CCAACACTTACTATGGCAGC+AGG | 0.570215 | 3.4:+12585364 | None:intergenic |
| ATCAAGACCACCAAATGCAT+GGG | 0.580578 | 3.4:-12585395 | MS.gene85485:CDS |
| CCTGCTGCCATAGTAAGTGT+TGG | 0.586831 | 3.4:-12585364 | MS.gene85485:CDS |
| AATGAGGCCAGTATGAAAAG+AGG | 0.609156 | 3.4:+12586272 | None:intergenic |
| AATACATCTAGGTAGAACTC+AGG | 0.627908 | 3.4:+12585262 | None:intergenic |
| ACATCATCTTCGCCAAATCG+GGG | 0.637712 | 3.4:-12585314 | MS.gene85485:CDS |
| TTGATTAACAAATAATGACA+AGG | 0.643119 | 3.4:-12586335 | None:intergenic |
| ATGTAACGATGATGGTGACT+TGG | 0.649079 | 3.4:-12585224 | MS.gene85485:CDS |
| TGATTAACAAATAATGACAA+GGG | 0.676333 | 3.4:-12586334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATGAAATGAATATCA+AGG | + | chr3.4:12586178-12586197 | None:intergenic | 15.0% |
| !! | TCTTTGAATATTAAATTTGA+TGG | - | chr3.4:12585704-12585723 | MS.gene85485:CDS | 15.0% |
| !!! | CATTTTTTTTTTCTATTCAT+TGG | - | chr3.4:12585732-12585751 | MS.gene85485:intron | 15.0% |
| !! | AAAAAGAATCTTATTGACAA+AGG | + | chr3.4:12585987-12586006 | None:intergenic | 20.0% |
| !! | AAATATCAATATAGTCGATT+TGG | + | chr3.4:12585795-12585814 | None:intergenic | 20.0% |
| !! | AATCGACTATATTGATATTT+CGG | - | chr3.4:12585795-12585814 | MS.gene85485:intron | 20.0% |
| !! | ATATTGCATATTATATACAG+GGG | - | chr3.4:12585338-12585357 | MS.gene85485:CDS | 20.0% |
| !! | CTACTTAGCAAAAAAAAAAA+AGG | - | chr3.4:12585427-12585446 | MS.gene85485:intron | 20.0% |
| !! | GATATTGCATATTATATACA+GGG | - | chr3.4:12585337-12585356 | MS.gene85485:CDS | 20.0% |
| !!! | ATATTTTAAATGTAGAGAAG+TGG | + | chr3.4:12585388-12585407 | None:intergenic | 20.0% |
| !!! | GTTTAACTTGTTGAAAAAAT+AGG | - | chr3.4:12585629-12585648 | MS.gene85485:CDS | 20.0% |
| !!! | TATTTTAAATGTAGAGAAGT+GGG | + | chr3.4:12585387-12585406 | None:intergenic | 20.0% |
| ! | AAAAGTTGAAATTAACCTGT+CGG | - | chr3.4:12585575-12585594 | MS.gene85485:CDS | 25.0% |
| ! | AAACTGAGTGAATATTGTTT+AGG | - | chr3.4:12585470-12585489 | MS.gene85485:intron | 25.0% |
| ! | AACTGAGTGAATATTGTTTA+GGG | - | chr3.4:12585471-12585490 | MS.gene85485:intron | 25.0% |
| ! | ATTCAAAGACTCAAAATCAA+AGG | + | chr3.4:12585693-12585712 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | - | chr3.4:12585928-12585947 | MS.gene85485:intron | 25.0% |
| ! | GAGACAGAATAATTATATTC+AGG | + | chr3.4:12585928-12585947 | None:intergenic | 25.0% |
| ! | GGATATTGCATATTATATAC+AGG | - | chr3.4:12585336-12585355 | MS.gene85485:CDS | 25.0% |
| ! | TATTGCATATTATATACAGG+GGG | - | chr3.4:12585339-12585358 | MS.gene85485:CDS | 25.0% |
| !! | ATTTTAAATGTAGAGAAGTG+GGG | + | chr3.4:12585386-12585405 | None:intergenic | 25.0% |
| !! | CTATTAAAACTCGCAATTTT+AGG | - | chr3.4:12585548-12585567 | MS.gene85485:CDS | 25.0% |
| !! | TGAGTTTAGTTTAATTGGTA+GGG | - | chr3.4:12585315-12585334 | MS.gene85485:CDS | 25.0% |
| !!! | AACTTGTTGAAAAAATAGGA+CGG | - | chr3.4:12585633-12585652 | MS.gene85485:CDS | 25.0% |
| !!! | CTAAAATTGCGAGTTTTAAT+AGG | + | chr3.4:12585550-12585569 | None:intergenic | 25.0% |
| AAGGAAAAAAAGAAGAGAAG+AGG | + | chr3.4:12585260-12585279 | None:intergenic | 30.0% | |
| AATTTCTGCCTTGAAGTTTA+AGG | + | chr3.4:12586322-12586341 | None:intergenic | 30.0% | |
| ACCAATTAAACTAAACTCAC+CGG | + | chr3.4:12585314-12585333 | None:intergenic | 30.0% | |
| ACTGAGTGAATATTGTTTAG+GGG | - | chr3.4:12585472-12585491 | MS.gene85485:intron | 30.0% | |
| ATATTATATACAGGGGGTTA+GGG | - | chr3.4:12585345-12585364 | MS.gene85485:CDS | 30.0% | |
| ATTTCTGCCTTGAAGTTTAA+GGG | + | chr3.4:12586321-12586340 | None:intergenic | 30.0% | |
| CTAAGCAAAAATGTTCTTGA+TGG | - | chr3.4:12585766-12585785 | MS.gene85485:intron | 30.0% | |
| GAATTTACCCTTAAACTTCA+AGG | - | chr3.4:12586311-12586330 | MS.gene85485:CDS | 30.0% | |
| GTAAATTACCATAACGAATG+AGG | + | chr3.4:12585209-12585228 | None:intergenic | 30.0% | |
| TGAAGAGATCAAGAATAGAT+TGG | - | chr3.4:12586265-12586284 | MS.gene85485:CDS | 30.0% | |
| TTTAAGGGTAAATTCCTTCA+AGG | + | chr3.4:12586306-12586325 | None:intergenic | 30.0% | |
| ! | GTGAGTTTAGTTTAATTGGT+AGG | - | chr3.4:12585314-12585333 | MS.gene85485:CDS | 30.0% |
| ! | TTTTCAACAAGTTAAACGAC+TGG | + | chr3.4:12585626-12585645 | None:intergenic | 30.0% |
| !! | AATTGCGAGTTTTAATAGGT+CGG | + | chr3.4:12585546-12585565 | None:intergenic | 30.0% |
| !! | TAAAACTCGCAATTTTAGGT+TGG | - | chr3.4:12585552-12585571 | MS.gene85485:CDS | 30.0% |
| AACTCTGATCTTGAGAAAGA+AGG | - | chr3.4:12585832-12585851 | MS.gene85485:intron | 35.0% | |
| AATACATCTAGGTAGAACTC+AGG | + | chr3.4:12586203-12586222 | None:intergenic | 35.0% | |
| ATTAAGATTGTTGCTCTCTC+TGG | - | chr3.4:12585153-12585172 | MS.gene85485:CDS | 35.0% | |
| CAATCAATCGCATTCTTTAG+CGG | + | chr3.4:12586044-12586063 | None:intergenic | 35.0% | |
| CATATTATATACAGGGGGTT+AGG | - | chr3.4:12585344-12585363 | MS.gene85485:CDS | 35.0% | |
| CCAATTAAACTAAACTCACC+GGG | + | chr3.4:12585313-12585332 | None:intergenic | 35.0% | |
| CCAGAAAAATGTAACGATGA+TGG | - | chr3.4:12586230-12586249 | MS.gene85485:intron | 35.0% | |
| CTCGAAGTAGTCATTTAGAA+AGG | + | chr3.4:12585279-12585298 | None:intergenic | 35.0% | |
| CTGAGTGAATATTGTTTAGG+GGG | - | chr3.4:12585473-12585492 | MS.gene85485:intron | 35.0% | |
| CTGGATGCTTAAATACATCT+AGG | + | chr3.4:12586214-12586233 | None:intergenic | 35.0% | |
| CTTTCTAAATGACTACTTCG+AGG | - | chr3.4:12585277-12585296 | MS.gene85485:CDS | 35.0% | |
| GCTAAAGAATGCGATTGATT+GGG | - | chr3.4:12586043-12586062 | MS.gene85485:intron | 35.0% | |
| GTTTAATAAACCTATCCGAC+AGG | + | chr3.4:12585593-12585612 | None:intergenic | 35.0% | |
| TCAAGATCAGAGTTCAACAT+TGG | + | chr3.4:12585826-12585845 | None:intergenic | 35.0% | |
| TTGAAATTAACCTGTCGGAT+AGG | - | chr3.4:12585580-12585599 | MS.gene85485:CDS | 35.0% | |
| TTGTTGAAAAAATAGGACGG+TGG | - | chr3.4:12585636-12585655 | MS.gene85485:CDS | 35.0% | |
| ! | CCATCATCGTTACATTTTTC+TGG | + | chr3.4:12586233-12586252 | None:intergenic | 35.0% |
| AACATCATCTTCGCCAAATC+GGG | - | chr3.4:12586147-12586166 | MS.gene85485:intron | 40.0% | |
| AATGAGGCCAGTATGAAAAG+AGG | + | chr3.4:12585193-12585212 | None:intergenic | 40.0% | |
| ATCAAGACCACCAAATGCAT+GGG | - | chr3.4:12586067-12586086 | MS.gene85485:intron | 40.0% | |
| CAACATCATCTTCGCCAAAT+CGG | - | chr3.4:12586146-12586165 | MS.gene85485:intron | 40.0% | |
| CGCTAAAGAATGCGATTGAT+TGG | - | chr3.4:12586042-12586061 | MS.gene85485:intron | 40.0% | |
| GAAAGTTCTTGTGTCCTTGA+AGG | - | chr3.4:12586289-12586308 | MS.gene85485:CDS | 40.0% | |
| TATCAAGGAAAACCCCGATT+TGG | + | chr3.4:12586163-12586182 | None:intergenic | 40.0% | |
| ! | ATGTAACGATGATGGTGACT+TGG | - | chr3.4:12586238-12586257 | MS.gene85485:intron | 40.0% |
| ! | CCCGGTGAGTTTAGTTTAAT+TGG | - | chr3.4:12585310-12585329 | MS.gene85485:CDS | 40.0% |
| ! | CGAAAAGCCTCTTTTCATAC+TGG | - | chr3.4:12585183-12585202 | MS.gene85485:CDS | 40.0% |
| ACATCATCTTCGCCAAATCG+GGG | - | chr3.4:12586148-12586167 | MS.gene85485:intron | 45.0% | |
| CATCAAGACCACCAAATGCA+TGG | - | chr3.4:12586066-12586085 | MS.gene85485:intron | 45.0% | |
| CGAAAAGCTTCAACTTCAGC+TGG | + | chr3.4:12585865-12585884 | None:intergenic | 45.0% | |
| CTAAGTAGGGGTGGCAAAAT+AGG | - | chr3.4:12585506-12585525 | MS.gene85485:intron | 45.0% | |
| CTTCGAGGCTAATCAAATCC+CGG | - | chr3.4:12585292-12585311 | MS.gene85485:CDS | 45.0% | |
| GGAGAGAAGACACTAAGTAG+GGG | - | chr3.4:12585494-12585513 | MS.gene85485:intron | 45.0% | |
| GGGAGAGAAGACACTAAGTA+GGG | - | chr3.4:12585493-12585512 | MS.gene85485:intron | 45.0% | |
| TGAAAAAATAGGACGGTGGC+AGG | - | chr3.4:12585640-12585659 | MS.gene85485:CDS | 45.0% | |
| ! | CATACTGGCCTCATTCGTTA+TGG | - | chr3.4:12585198-12585217 | MS.gene85485:CDS | 45.0% |
| ! | TTGAGCTTTTCCTCCACCAA+AGG | + | chr3.4:12586129-12586148 | None:intergenic | 45.0% |
| CAAAATAGGTCGAGCCTGTC+GGG | - | chr3.4:12585520-12585539 | MS.gene85485:intron | 50.0% | |
| CCAACACTTACTATGGCAGC+AGG | + | chr3.4:12586101-12586120 | None:intergenic | 50.0% | |
| CCTGCTGCCATAGTAAGTGT+TGG | - | chr3.4:12586098-12586117 | MS.gene85485:intron | 50.0% | |
| GAGAAGACACTAAGTAGGGG+TGG | - | chr3.4:12585497-12585516 | MS.gene85485:intron | 50.0% | |
| GCAAAATAGGTCGAGCCTGT+CGG | - | chr3.4:12585519-12585538 | MS.gene85485:intron | 50.0% | |
| GGCTCCTCCAACACTTACTA+TGG | + | chr3.4:12586108-12586127 | None:intergenic | 50.0% | |
| GGGGAGAGAAGACACTAAGT+AGG | - | chr3.4:12585492-12585511 | MS.gene85485:intron | 50.0% | |
| GGTTTACCAGCCCATGCATT+TGG | + | chr3.4:12586080-12586099 | None:intergenic | 50.0% | |
| TTACCAGCCCATGCATTTGG+TGG | + | chr3.4:12586077-12586096 | None:intergenic | 50.0% | |
| ! | TTTTAATAGGTCGGCCCGAC+AGG | + | chr3.4:12585537-12585556 | None:intergenic | 50.0% |
| !! | GCTGCCATAGTAAGTGTTGG+AGG | - | chr3.4:12586101-12586120 | MS.gene85485:intron | 50.0% |
| !! | GTAAGTGTTGGAGGAGCCTT+TGG | - | chr3.4:12586110-12586129 | MS.gene85485:intron | 50.0% |
| AGACCACCAAATGCATGGGC+TGG | - | chr3.4:12586071-12586090 | MS.gene85485:intron | 55.0% | |
| ! | AGTGTTGGAGGAGCCTTTGG+TGG | - | chr3.4:12586113-12586132 | MS.gene85485:intron | 55.0% |
| GGGGGTTAGGGTTCGAAGCT+CGG | - | chr3.4:12585357-12585376 | MS.gene85485:CDS | 60.0% | |
| GTTGGAGGAGCCTTTGGTGG+AGG | - | chr3.4:12586116-12586135 | MS.gene85485:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12585141 | 12586343 | 12585141 | ID=MS.gene85485 |
| chr3.4 | mRNA | 12585141 | 12586343 | 12585141 | ID=MS.gene85485.t1;Parent=MS.gene85485 |
| chr3.4 | exon | 12586265 | 12586343 | 12586265 | ID=MS.gene85485.t1.exon1;Parent=MS.gene85485.t1 |
| chr3.4 | CDS | 12586265 | 12586343 | 12586265 | ID=cds.MS.gene85485.t1;Parent=MS.gene85485.t1 |
| chr3.4 | exon | 12585535 | 12585726 | 12585535 | ID=MS.gene85485.t1.exon2;Parent=MS.gene85485.t1 |
| chr3.4 | CDS | 12585535 | 12585726 | 12585535 | ID=cds.MS.gene85485.t1;Parent=MS.gene85485.t1 |
| chr3.4 | exon | 12585141 | 12585445 | 12585141 | ID=MS.gene85485.t1.exon3;Parent=MS.gene85485.t1 |
| chr3.4 | CDS | 12585141 | 12585445 | 12585141 | ID=cds.MS.gene85485.t1;Parent=MS.gene85485.t1 |
| Gene Sequence |
| Protein sequence |
