Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87117.t1 | XP_013452730.1 | 96.5 | 315 | 11 | 0 | 1 | 315 | 1 | 315 | 1.60E-170 | 608.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87117.t1 | Q9C9X3 | 55.6 | 315 | 139 | 1 | 1 | 314 | 1 | 315 | 8.7e-96 | 351.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87117.t1 | A0A072UCH1 | 96.5 | 315 | 11 | 0 | 1 | 315 | 1 | 315 | 1.2e-170 | 608.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87117 | MS.gene92405 | PPI |
| MS.gene89484 | MS.gene87117 | PPI |
| MS.gene00058 | MS.gene87117 | PPI |
| MS.gene28077 | MS.gene87117 | PPI |
| MS.gene87117 | MS.gene043964 | PPI |
| MS.gene010215 | MS.gene87117 | PPI |
| MS.gene035891 | MS.gene87117 | PPI |
| MS.gene061777 | MS.gene87117 | PPI |
| MS.gene058336 | MS.gene87117 | PPI |
| MS.gene056195 | MS.gene87117 | PPI |
| MS.gene57291 | MS.gene87117 | PPI |
| MS.gene87117 | MS.gene67887 | PPI |
| MS.gene45772 | MS.gene87117 | PPI |
| MS.gene55897 | MS.gene87117 | PPI |
| MS.gene016642 | MS.gene87117 | PPI |
| MS.gene030809 | MS.gene87117 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87117.t1 | MTR_6g071615 | 96.508 | 315 | 11 | 0 | 1 | 315 | 1 | 315 | 0.0 | 636 |
| MS.gene87117.t1 | MTR_6g071605 | 89.524 | 315 | 33 | 0 | 1 | 315 | 1 | 315 | 0.0 | 584 |
| MS.gene87117.t1 | MTR_1g112520 | 89.841 | 315 | 32 | 0 | 1 | 315 | 1 | 315 | 0.0 | 574 |
| MS.gene87117.t1 | MTR_8g107640 | 79.936 | 314 | 63 | 0 | 1 | 314 | 1 | 314 | 0.0 | 537 |
| MS.gene87117.t1 | MTR_6g071595 | 86.984 | 315 | 41 | 0 | 1 | 315 | 1 | 315 | 0.0 | 534 |
| MS.gene87117.t1 | MTR_6g071595 | 85.600 | 250 | 36 | 0 | 1 | 250 | 1 | 250 | 1.29e-154 | 433 |
| MS.gene87117.t1 | MTR_1g033560 | 60.252 | 317 | 120 | 3 | 1 | 314 | 1 | 314 | 2.50e-136 | 389 |
| MS.gene87117.t1 | MTR_3g018780 | 38.608 | 316 | 191 | 3 | 1 | 315 | 1 | 314 | 3.58e-70 | 221 |
| MS.gene87117.t1 | MTR_8g038150 | 38.486 | 317 | 188 | 3 | 1 | 312 | 1 | 315 | 9.17e-70 | 219 |
| MS.gene87117.t1 | MTR_8g038220 | 37.855 | 317 | 192 | 4 | 1 | 315 | 1 | 314 | 2.01e-67 | 213 |
| MS.gene87117.t1 | MTR_8g038220 | 37.855 | 317 | 191 | 4 | 1 | 315 | 1 | 313 | 2.55e-67 | 213 |
| MS.gene87117.t1 | MTR_5g063670 | 37.500 | 320 | 190 | 5 | 1 | 315 | 1 | 315 | 3.00e-67 | 213 |
| MS.gene87117.t1 | MTR_8g038180 | 38.658 | 313 | 189 | 3 | 1 | 312 | 1 | 311 | 1.58e-66 | 211 |
| MS.gene87117.t1 | MTR_3g018790 | 39.172 | 314 | 186 | 5 | 1 | 312 | 1 | 311 | 1.16e-65 | 209 |
| MS.gene87117.t1 | MTR_2g031980 | 35.783 | 313 | 198 | 3 | 1 | 312 | 1 | 311 | 3.44e-64 | 205 |
| MS.gene87117.t1 | MTR_0276s0050 | 37.025 | 316 | 191 | 4 | 1 | 312 | 1 | 312 | 3.69e-63 | 202 |
| MS.gene87117.t1 | MTR_8g038210 | 36.538 | 312 | 196 | 2 | 1 | 312 | 1 | 310 | 6.13e-61 | 197 |
| MS.gene87117.t1 | MTR_8g038210 | 36.102 | 313 | 198 | 2 | 1 | 313 | 1 | 311 | 9.52e-60 | 194 |
| MS.gene87117.t1 | MTR_3g018790 | 34.711 | 242 | 154 | 4 | 74 | 313 | 19 | 258 | 2.25e-39 | 139 |
| MS.gene87117.t1 | MTR_6g028030 | 32.847 | 274 | 176 | 5 | 45 | 310 | 34 | 307 | 7.02e-39 | 140 |
| MS.gene87117.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 1.90e-35 | 130 |
| MS.gene87117.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 1.90e-35 | 130 |
| MS.gene87117.t1 | MTR_3g018920 | 33.962 | 212 | 107 | 3 | 1 | 212 | 1 | 179 | 2.54e-29 | 110 |
| MS.gene87117.t1 | MTR_3g018925 | 44.565 | 92 | 51 | 0 | 222 | 313 | 16 | 107 | 2.39e-17 | 76.6 |
| MS.gene87117.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 5.95e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87117.t1 | AT1G68090 | 55.556 | 315 | 139 | 1 | 1 | 314 | 1 | 315 | 7.69e-129 | 370 |
| MS.gene87117.t1 | AT1G68090 | 53.200 | 250 | 116 | 1 | 1 | 249 | 1 | 250 | 3.84e-93 | 277 |
| MS.gene87117.t1 | AT5G10230 | 39.936 | 313 | 186 | 2 | 1 | 312 | 1 | 312 | 3.90e-75 | 233 |
| MS.gene87117.t1 | AT5G65020 | 40.952 | 315 | 181 | 4 | 1 | 312 | 1 | 313 | 8.04e-75 | 233 |
| MS.gene87117.t1 | AT5G10220 | 38.730 | 315 | 189 | 3 | 1 | 312 | 1 | 314 | 1.68e-73 | 229 |
| MS.gene87117.t1 | AT1G35720 | 38.438 | 320 | 188 | 4 | 1 | 315 | 1 | 316 | 2.74e-70 | 221 |
| MS.gene87117.t1 | AT5G12380 | 38.170 | 317 | 185 | 5 | 1 | 312 | 1 | 311 | 8.22e-67 | 212 |
| MS.gene87117.t1 | AT5G65020 | 39.655 | 290 | 170 | 4 | 26 | 312 | 11 | 298 | 4.54e-64 | 204 |
| MS.gene87117.t1 | AT2G38760 | 34.483 | 319 | 201 | 3 | 1 | 312 | 1 | 318 | 1.39e-57 | 188 |
| MS.gene87117.t1 | AT2G38750 | 29.808 | 312 | 186 | 9 | 26 | 315 | 2 | 302 | 2.17e-30 | 117 |
| MS.gene87117.t1 | AT2G38750 | 29.808 | 312 | 186 | 9 | 26 | 315 | 19 | 319 | 2.81e-30 | 117 |
Find 73 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATATACCATTCAAAATT+TGG | 0.177438 | 6.2:+43434957 | MS.gene87117:CDS |
| TGCTCCGTTCACTGAATATT+TGG | 0.206777 | 6.2:-43435630 | None:intergenic |
| TATAAGGCAATGAAAGGTTT+AGG | 0.270992 | 6.2:+43436063 | MS.gene87117:CDS |
| AACATCTTTGACTAATTATT+CGG | 0.297871 | 6.2:-43436249 | None:intergenic |
| TCGATATTCCTGTTGGATAT+AGG | 0.322299 | 6.2:-43434449 | None:intergenic |
| TTCAGACTGCAGTTCTGCTT+TGG | 0.323325 | 6.2:+43434811 | MS.gene87117:intron |
| TATTAACCTCGGGGCCTTCC+AGG | 0.335171 | 6.2:-43435528 | None:intergenic |
| AATGAAACATCGGGGAATTT+CGG | 0.339267 | 6.2:+43435806 | MS.gene87117:CDS |
| ATCATGGCAGGTGCTGTATA+AGG | 0.376507 | 6.2:+43436047 | MS.gene87117:intron |
| ACCTTTGCGAAATACTTTGC+CGG | 0.378595 | 6.2:-43435866 | None:intergenic |
| AGAGCTGAGCGGAAAGTTAG+AGG | 0.381753 | 6.2:+43434510 | MS.gene87117:CDS |
| AAATCGAATCAAACACTTCC+GGG | 0.391892 | 6.2:+43434997 | MS.gene87117:CDS |
| TGAACGGAGCAGCGCACATT+TGG | 0.397448 | 6.2:+43435642 | MS.gene87117:CDS |
| TAACTTCAGTAGCAGCTTCA+AGG | 0.403263 | 6.2:-43434896 | None:intergenic |
| GAAATCGAATCAAACACTTC+CGG | 0.405741 | 6.2:+43434996 | MS.gene87117:CDS |
| CTTTGGATGCCCGACCCTGC+AGG | 0.412055 | 6.2:+43434828 | MS.gene87117:CDS |
| ATAAGGCAATGAAAGGTTTA+GGG | 0.415419 | 6.2:+43436064 | MS.gene87117:CDS |
| AATACAATGTGCTCATAATC+CGG | 0.440599 | 6.2:+43435847 | MS.gene87117:CDS |
| GCGATTTCTCTATTAACCTC+GGG | 0.444900 | 6.2:-43435538 | None:intergenic |
| TCTCTAGGAGAAGGAGGAAC+TGG | 0.449109 | 6.2:-43433497 | None:intergenic |
| CCTGTAGTGGCCAGATGTTT+CGG | 0.451124 | 6.2:-43436202 | None:intergenic |
| CTAATGATAACACACTCATA+AGG | 0.453321 | 6.2:+43436088 | MS.gene87117:CDS |
| ACCTCGGGGCCTTCCAGGCG+AGG | 0.453782 | 6.2:-43435523 | None:intergenic |
| CCTCGGGGCCTTCCAGGCGA+GGG | 0.461510 | 6.2:-43435522 | None:intergenic |
| GCAGTTCACTCCGAAACATC+TGG | 0.461957 | 6.2:+43436192 | MS.gene87117:CDS |
| ATTTCTACGTCACGTCCTGC+AGG | 0.468848 | 6.2:-43434843 | None:intergenic |
| ATGAGCAAGAATATTGATTA+CGG | 0.472771 | 6.2:-43434407 | None:intergenic |
| TACGTCACGTCCTGCAGGGT+CGG | 0.476581 | 6.2:-43434838 | None:intergenic |
| TAATGATAACACACTCATAA+GGG | 0.480243 | 6.2:+43436089 | MS.gene87117:CDS |
| ATATGTAAGCACCCCTCGCC+TGG | 0.480560 | 6.2:+43435510 | MS.gene87117:CDS |
| ACGTCACGTCCTGCAGGGTC+GGG | 0.485415 | 6.2:-43434837 | None:intergenic |
| CAAAGGTTCTCTACAGAGCT+GGG | 0.485666 | 6.2:+43435572 | MS.gene87117:CDS |
| GCAGTAAAGAATGAAACATC+GGG | 0.486342 | 6.2:+43435797 | MS.gene87117:CDS |
| CCGAAACATCTGGCCACTAC+AGG | 0.487241 | 6.2:+43436202 | MS.gene87117:CDS |
| GCAAAGGTTCTCTACAGAGC+TGG | 0.487793 | 6.2:+43435571 | MS.gene87117:CDS |
| GACGTGACGTAGAAATCATC+AGG | 0.492649 | 6.2:+43434850 | MS.gene87117:CDS |
| AGCGATTTCTCTATTAACCT+CGG | 0.497832 | 6.2:-43435539 | None:intergenic |
| CACTTCCGGGGATCTTCAAA+AGG | 0.503969 | 6.2:+43435010 | MS.gene87117:CDS |
| CAACTTTACCGTGCTTTCAA+AGG | 0.506054 | 6.2:+43433530 | MS.gene87117:CDS |
| GCAGCGTGCCTATATCCAAC+AGG | 0.512462 | 6.2:+43434441 | MS.gene87117:CDS |
| TTTAGATATTGTAGTTGGGA+TGG | 0.523691 | 6.2:-43434933 | None:intergenic |
| ATGTTGTTCGATATTCCTGT+TGG | 0.527705 | 6.2:-43434456 | None:intergenic |
| AGTTGCATGGCATCATCTCT+AGG | 0.543315 | 6.2:-43433512 | None:intergenic |
| GTAAGCACCCCTCGCCTGGA+AGG | 0.546921 | 6.2:+43435514 | MS.gene87117:CDS |
| CTCGGGGCCTTCCAGGCGAG+GGG | 0.555371 | 6.2:-43435521 | None:intergenic |
| TAATAGAGAAATCGCTGAGA+AGG | 0.559490 | 6.2:+43435546 | MS.gene87117:CDS |
| TTATCCAAATATTCAGTGAA+CGG | 0.573594 | 6.2:+43435626 | MS.gene87117:CDS |
| GGCAGTAAAGAATGAAACAT+CGG | 0.578507 | 6.2:+43435796 | MS.gene87117:intron |
| GAAAGCACGGTAAAGTTGCA+TGG | 0.580655 | 6.2:-43433525 | None:intergenic |
| GGAATTTCGGTCACGCACTT+CGG | 0.582367 | 6.2:+43435819 | MS.gene87117:CDS |
| GCTTATTATCATGACATGTA+CGG | 0.583424 | 6.2:+43435676 | MS.gene87117:CDS |
| CGAAACATCTGGCCACTACA+GGG | 0.584172 | 6.2:+43436203 | MS.gene87117:CDS |
| CCCTCGCCTGGAAGGCCCCG+AGG | 0.595502 | 6.2:+43435522 | MS.gene87117:CDS |
| TTTCTACGTCACGTCCTGCA+GGG | 0.596633 | 6.2:-43434842 | None:intergenic |
| GTACGGTCACTCATTGAAGA+AGG | 0.600269 | 6.2:+43435693 | MS.gene87117:CDS |
| CGAGAAGAAAAGCCCTGTAG+TGG | 0.601233 | 6.2:-43436215 | None:intergenic |
| GTGCTGTATAAGGCAATGAA+AGG | 0.609141 | 6.2:+43436057 | MS.gene87117:CDS |
| ATATGGCACCTTTGAAAGCA+CGG | 0.612264 | 6.2:-43433538 | None:intergenic |
| ATGGCATCATCTCTAGGAGA+AGG | 0.615001 | 6.2:-43433506 | None:intergenic |
| GTCATGATAATAAGCACTGA+CGG | 0.625821 | 6.2:-43435668 | None:intergenic |
| TCCGGCAAAGTATTTCGCAA+AGG | 0.630329 | 6.2:+43435865 | MS.gene87117:CDS |
| CTAGGAGAAGGAGGAACTGG+AGG | 0.634360 | 6.2:-43433494 | None:intergenic |
| CGATTTCTCTATTAACCTCG+GGG | 0.638049 | 6.2:-43435537 | None:intergenic |
| AATCGCTGAGAAGGATGCAA+AGG | 0.638063 | 6.2:+43435555 | MS.gene87117:CDS |
| GCATCATCTCTAGGAGAAGG+AGG | 0.640486 | 6.2:-43433503 | None:intergenic |
| CGCTTAGTTTCAGAGCTGAG+CGG | 0.662516 | 6.2:+43434499 | MS.gene87117:CDS |
| AGAGCTGGGGAAAAGAAACT+CGG | 0.665887 | 6.2:+43435586 | MS.gene87117:CDS |
| AATCGAATCAAACACTTCCG+GGG | 0.671809 | 6.2:+43434998 | MS.gene87117:CDS |
| TCATAAGGGTCATTGTAACA+AGG | 0.683484 | 6.2:+43436103 | MS.gene87117:CDS |
| AAAGGTTCTCTACAGAGCTG+GGG | 0.685088 | 6.2:+43435573 | MS.gene87117:CDS |
| ATATCGAACAACATACGCGG+AGG | 0.733523 | 6.2:+43434465 | MS.gene87117:CDS |
| CAGTAAAGAATGAAACATCG+GGG | 0.745639 | 6.2:+43435798 | MS.gene87117:CDS |
| GGAATATCGAACAACATACG+CGG | 0.764719 | 6.2:+43434462 | MS.gene87117:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGGAAAAAAAAATAAAAAT+TGG | - | chr6.2:43435227-43435246 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTTTTTCTTTTT+TGG | - | chr6.2:43433771-43433790 | None:intergenic | 10.0% |
| !!! | GTAATTTAATTTCATAAAAT+CGG | + | chr6.2:43433796-43433815 | MS.gene87117:intron | 10.0% |
| !! | AAACTAAAATAAAGTCAAAT+TGG | - | chr6.2:43435949-43435968 | None:intergenic | 15.0% |
| !!! | TCAATTTCATCAATTTATTT+TGG | + | chr6.2:43435743-43435762 | MS.gene87117:intron | 15.0% |
| !!! | TTTTAGTTTTGTTATAGAAA+TGG | + | chr6.2:43435960-43435979 | MS.gene87117:intron | 15.0% |
| !!! | TTTTCATGTTAATATATCAA+AGG | + | chr6.2:43435428-43435447 | MS.gene87117:intron | 15.0% |
| !!! | TTTTTACATTTTGTAATGTA+AGG | - | chr6.2:43434630-43434649 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAGTACTGTATAA+TGG | - | chr6.2:43435128-43435147 | None:intergenic | 15.0% |
| !! | ATAAATTGTTTATCCAATCA+TGG | + | chr6.2:43436031-43436050 | MS.gene87117:intron | 20.0% |
| !! | ATAATGGCATATACTATAAT+CGG | - | chr6.2:43435112-43435131 | None:intergenic | 20.0% |
| !! | ATCAAAAAAAGTTGAAACAA+CGG | - | chr6.2:43435262-43435281 | None:intergenic | 20.0% |
| !! | CAAAATTTACCATAGTTTAT+AGG | + | chr6.2:43435335-43435354 | MS.gene87117:intron | 20.0% |
| !! | TACAAAGTTATTTACCTATA+AGG | - | chr6.2:43434568-43434587 | None:intergenic | 20.0% |
| !! | TTAGAAAAACCTATAAACTA+TGG | - | chr6.2:43435347-43435366 | None:intergenic | 20.0% |
| !! | TTGTTTATCTCACATTATTT+CGG | + | chr6.2:43434785-43434804 | MS.gene87117:intron | 20.0% |
| !!! | ACTCAACTCAAATTTTAATA+TGG | + | chr6.2:43433935-43433954 | MS.gene87117:intron | 20.0% |
| !!! | AGTTTATAGGTTTTTCTAAT+AGG | + | chr6.2:43435348-43435367 | MS.gene87117:intron | 20.0% |
| !!! | GTTTATAGGTTTTTCTAATA+GGG | + | chr6.2:43435349-43435368 | MS.gene87117:intron | 20.0% |
| !!! | TTTCTAAAATGAAATTAGCA+AGG | - | chr6.2:43434337-43434356 | None:intergenic | 20.0% |
| ! | AAAAACTGTACTTTGATATG+TGG | + | chr6.2:43434355-43434374 | MS.gene87117:intron | 25.0% |
| ! | AAAGATTCAAAAACTCAAAG+AGG | - | chr6.2:43434741-43434760 | None:intergenic | 25.0% |
| ! | AAGATTCAAAAACTCAAAGA+GGG | - | chr6.2:43434740-43434759 | None:intergenic | 25.0% |
| ! | CAGATATACCATTCAAAATT+TGG | + | chr6.2:43434957-43434976 | MS.gene87117:CDS | 25.0% |
| ! | TAAATCAACTCTTACAAAAC+CGG | - | chr6.2:43433914-43433933 | None:intergenic | 25.0% |
| ! | TAATGATAACACACTCATAA+GGG | + | chr6.2:43436089-43436108 | MS.gene87117:CDS | 25.0% |
| ! | TTATCCAAATATTCAGTGAA+CGG | + | chr6.2:43435626-43435645 | MS.gene87117:CDS | 25.0% |
| !! | ATGAGCAAGAATATTGATTA+CGG | - | chr6.2:43434410-43434429 | None:intergenic | 25.0% |
| !! | ATTCATGTATCACATTTTGT+TGG | - | chr6.2:43434214-43434233 | None:intergenic | 25.0% |
| !! | GATAAACACCAAATTTTGAA+TGG | - | chr6.2:43434968-43434987 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGAATCTTTTAG+TGG | + | chr6.2:43434744-43434763 | MS.gene87117:intron | 25.0% |
| !! | TTCATGTATCACATTTTGTT+GGG | - | chr6.2:43434213-43434232 | None:intergenic | 25.0% |
| !!! | ACCTAATATTTTAACGTGTT+GGG | + | chr6.2:43434125-43434144 | MS.gene87117:intron | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | - | chr6.2:43434940-43434959 | None:intergenic | 25.0% |
| !!! | GGTTATCTTATTTTTGTAAG+AGG | + | chr6.2:43435901-43435920 | MS.gene87117:intron | 25.0% |
| !!! | TACCTAATATTTTAACGTGT+TGG | + | chr6.2:43434124-43434143 | MS.gene87117:intron | 25.0% |
| !!! | TCTGTTTTAGATATTGTAGT+TGG | - | chr6.2:43434941-43434960 | None:intergenic | 25.0% |
| !!! | TTTCATAAAATCGGTTTGTA+AGG | + | chr6.2:43433805-43433824 | MS.gene87117:intron | 25.0% |
| AAATTCATCTCTAATTCCGT+CGG | + | chr6.2:43435186-43435205 | MS.gene87117:intron | 30.0% | |
| AATACAATGTGCTCATAATC+CGG | + | chr6.2:43435847-43435866 | MS.gene87117:CDS | 30.0% | |
| ACCCAACACGTTAAAATATT+AGG | - | chr6.2:43434129-43434148 | None:intergenic | 30.0% | |
| ACTTTGATATGTGGTTATAC+AGG | + | chr6.2:43434364-43434383 | MS.gene87117:intron | 30.0% | |
| AGCCTTAGTTATCACATTAA+TGG | + | chr6.2:43435064-43435083 | MS.gene87117:intron | 30.0% | |
| ATAAGATAAGGCCTTAACAT+GGG | + | chr6.2:43433856-43433875 | MS.gene87117:intron | 30.0% | |
| ATAAGGCAATGAAAGGTTTA+GGG | + | chr6.2:43436064-43436083 | MS.gene87117:CDS | 30.0% | |
| ATATGTGGTTATACAGGATT+TGG | + | chr6.2:43434370-43434389 | MS.gene87117:intron | 30.0% | |
| ATGAAAATTGACTGAGATAC+TGG | + | chr6.2:43433645-43433664 | MS.gene87117:intron | 30.0% | |
| CTAATGATAACACACTCATA+AGG | + | chr6.2:43436088-43436107 | MS.gene87117:CDS | 30.0% | |
| GACCATTAATGTGATAACTA+AGG | - | chr6.2:43435069-43435088 | None:intergenic | 30.0% | |
| GAGTATCATTGGATAAGATA+AGG | + | chr6.2:43433844-43433863 | MS.gene87117:intron | 30.0% | |
| GCTTATTATCATGACATGTA+CGG | + | chr6.2:43435676-43435695 | MS.gene87117:CDS | 30.0% | |
| TAACTAAGGCTCAATGTAAA+TGG | - | chr6.2:43435055-43435074 | None:intergenic | 30.0% | |
| TATAAGGCAATGAAAGGTTT+AGG | + | chr6.2:43436063-43436082 | MS.gene87117:CDS | 30.0% | |
| TCACTTATAAACCCATGTTA+AGG | - | chr6.2:43433870-43433889 | None:intergenic | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | - | chr6.2:43434936-43434955 | None:intergenic | 30.0% | |
| ! | TCTTACAAAACCGGTTTATA+AGG | - | chr6.2:43433905-43433924 | None:intergenic | 30.0% |
| ! | TTTGTTATAGAAATGGCCTA+TGG | + | chr6.2:43435967-43435986 | MS.gene87117:intron | 30.0% |
| !! | AGTCAATTTAGTAGCCTTAT+AGG | + | chr6.2:43434551-43434570 | MS.gene87117:intron | 30.0% |
| !! | TCATAAAAGTGCTTATCCAT+AGG | - | chr6.2:43435986-43436005 | None:intergenic | 30.0% |
| !!! | GTTGGTTTTAAGAGTATCAT+TGG | + | chr6.2:43433833-43433852 | MS.gene87117:intron | 30.0% |
| AAATCGAATCAAACACTTCC+GGG | + | chr6.2:43434997-43435016 | MS.gene87117:CDS | 35.0% | |
| AATGAAACATCGGGGAATTT+CGG | + | chr6.2:43435806-43435825 | MS.gene87117:CDS | 35.0% | |
| ACAACGGCAAAAATTAGAGA+TGG | - | chr6.2:43435246-43435265 | None:intergenic | 35.0% | |
| ACATTCCTCACCTTATAAAC+CGG | + | chr6.2:43433892-43433911 | MS.gene87117:intron | 35.0% | |
| AGCGATTTCTCTATTAACCT+CGG | - | chr6.2:43435542-43435561 | None:intergenic | 35.0% | |
| ATAGGGTGCAAAAACTAGAT+AGG | + | chr6.2:43435366-43435385 | MS.gene87117:intron | 35.0% | |
| ATGCAAGCAAGATCTTAACA+AGG | - | chr6.2:43435492-43435511 | None:intergenic | 35.0% | |
| ATGTTGTTCGATATTCCTGT+TGG | - | chr6.2:43434459-43434478 | None:intergenic | 35.0% | |
| ATTAGTGGCCAGATAGAAAA+TGG | - | chr6.2:43433989-43434008 | None:intergenic | 35.0% | |
| ATTGTTTATCCAATCATGGC+AGG | + | chr6.2:43436035-43436054 | MS.gene87117:intron | 35.0% | |
| CAGTAAAGAATGAAACATCG+GGG | + | chr6.2:43435798-43435817 | MS.gene87117:CDS | 35.0% | |
| GAAATCGAATCAAACACTTC+CGG | + | chr6.2:43434996-43435015 | MS.gene87117:CDS | 35.0% | |
| GATAAGATAAGGCCTTAACA+TGG | + | chr6.2:43433855-43433874 | MS.gene87117:intron | 35.0% | |
| GCAGTAAAGAATGAAACATC+GGG | + | chr6.2:43435797-43435816 | MS.gene87117:CDS | 35.0% | |
| GGCAGTAAAGAATGAAACAT+CGG | + | chr6.2:43435796-43435815 | MS.gene87117:intron | 35.0% | |
| TAATAGAGAAATCGCTGAGA+AGG | + | chr6.2:43435546-43435565 | MS.gene87117:CDS | 35.0% | |
| TCATAAGGGTCATTGTAACA+AGG | + | chr6.2:43436103-43436122 | MS.gene87117:CDS | 35.0% | |
| TCATGCTGAAAACTCATATC+AGG | + | chr6.2:43435775-43435794 | MS.gene87117:intron | 35.0% | |
| TCGATATTCCTGTTGGATAT+AGG | - | chr6.2:43434452-43434471 | None:intergenic | 35.0% | |
| TCTATCTGGCCACTAATATT+AGG | + | chr6.2:43433992-43434011 | MS.gene87117:intron | 35.0% | |
| !! | AAAATCGGTTTGTAAGGTGA+TGG | + | chr6.2:43433811-43433830 | MS.gene87117:intron | 35.0% |
| !! | GTCATGATAATAAGCACTGA+CGG | - | chr6.2:43435671-43435690 | None:intergenic | 35.0% |
| AATCGAATCAAACACTTCCG+GGG | + | chr6.2:43434998-43435017 | MS.gene87117:CDS | 40.0% | |
| ACCTTTGCGAAATACTTTGC+CGG | - | chr6.2:43435869-43435888 | None:intergenic | 40.0% | |
| ATCGGCAGAAGAAATAAGTC+AGG | - | chr6.2:43435094-43435113 | None:intergenic | 40.0% | |
| CAACCATCAACTTACCTAAG+CGG | - | chr6.2:43434018-43434037 | None:intergenic | 40.0% | |
| CAACTTTACCGTGCTTTCAA+AGG | + | chr6.2:43433530-43433549 | MS.gene87117:CDS | 40.0% | |
| CGATTTCTCTATTAACCTCG+GGG | - | chr6.2:43435540-43435559 | None:intergenic | 40.0% | |
| GAGAGAGAGAGAGAGAAATA+TGG | - | chr6.2:43433558-43433577 | None:intergenic | 40.0% | |
| GCGATTTCTCTATTAACCTC+GGG | - | chr6.2:43435541-43435560 | None:intergenic | 40.0% | |
| GGAATATCGAACAACATACG+CGG | + | chr6.2:43434462-43434481 | MS.gene87117:CDS | 40.0% | |
| GTGCTGTATAAGGCAATGAA+AGG | + | chr6.2:43436057-43436076 | MS.gene87117:CDS | 40.0% | |
| TAACTTCAGTAGCAGCTTCA+AGG | - | chr6.2:43434899-43434918 | None:intergenic | 40.0% | |
| TGCTCCGTTCACTGAATATT+TGG | - | chr6.2:43435633-43435652 | None:intergenic | 40.0% | |
| TGTATGATCTTTCAACGCAG+CGG | - | chr6.2:43434685-43434704 | None:intergenic | 40.0% | |
| ! | ACATTTTGTTGGGACTTCCA+GGG | - | chr6.2:43434203-43434222 | None:intergenic | 40.0% |
| ! | ATATGGCACCTTTGAAAGCA+CGG | - | chr6.2:43433541-43433560 | None:intergenic | 40.0% |
| ! | CAAAACCGGTTTATAAGGTG+AGG | - | chr6.2:43433900-43433919 | None:intergenic | 40.0% |
| ! | GCTTTTCTTCTCGCACTTTT+GGG | + | chr6.2:43436225-43436244 | MS.gene87117:CDS | 40.0% |
| !!! | CGCAAAGGTATTTTGCAATG+TGG | + | chr6.2:43435880-43435899 | MS.gene87117:intron | 40.0% |
| AAAGGTTCTCTACAGAGCTG+GGG | + | chr6.2:43435573-43435592 | MS.gene87117:CDS | 45.0% | |
| AATCGCTGAGAAGGATGCAA+AGG | + | chr6.2:43435555-43435574 | MS.gene87117:CDS | 45.0% | |
| AGAGCTGGGGAAAAGAAACT+CGG | + | chr6.2:43435586-43435605 | MS.gene87117:CDS | 45.0% | |
| AGTTGCATGGCATCATCTCT+AGG | - | chr6.2:43433515-43433534 | None:intergenic | 45.0% | |
| ATATCGAACAACATACGCGG+AGG | + | chr6.2:43434465-43434484 | MS.gene87117:CDS | 45.0% | |
| ATTCCGTCGGTAGGTATTAG+TGG | + | chr6.2:43435199-43435218 | MS.gene87117:intron | 45.0% | |
| CAAAGGTTCTCTACAGAGCT+GGG | + | chr6.2:43435572-43435591 | MS.gene87117:CDS | 45.0% | |
| CCACTAATATTAGGCCGCTT+AGG | + | chr6.2:43434001-43434020 | MS.gene87117:intron | 45.0% | |
| CCAGATAGAAAATGGTCGAG+CGG | - | chr6.2:43433981-43434000 | None:intergenic | 45.0% | |
| CCTAAGCGGCCTAATATTAG+TGG | - | chr6.2:43434004-43434023 | None:intergenic | 45.0% | |
| GACGTGACGTAGAAATCATC+AGG | + | chr6.2:43434850-43434869 | MS.gene87117:CDS | 45.0% | |
| GGCAGAAGAAATAAGTCAGG+AGG | - | chr6.2:43435091-43435110 | None:intergenic | 45.0% | |
| GTACGGTCACTCATTGAAGA+AGG | + | chr6.2:43435693-43435712 | MS.gene87117:CDS | 45.0% | |
| TATACAGCACCTGCCATGAT+TGG | - | chr6.2:43436047-43436066 | None:intergenic | 45.0% | |
| TCATCTCTAATTCCGTCGGT+AGG | + | chr6.2:43435190-43435209 | MS.gene87117:intron | 45.0% | |
| TTCAGACTGCAGTTCTGCTT+TGG | + | chr6.2:43434811-43434830 | MS.gene87117:intron | 45.0% | |
| TTCCGTCGGTAGGTATTAGT+GGG | + | chr6.2:43435200-43435219 | MS.gene87117:intron | 45.0% | |
| ! | ATCATGGCAGGTGCTGTATA+AGG | + | chr6.2:43436047-43436066 | MS.gene87117:intron | 45.0% |
| ! | ATGGCATCATCTCTAGGAGA+AGG | - | chr6.2:43433509-43433528 | None:intergenic | 45.0% |
| ! | CACATTTTGTTGGGACTTCC+AGG | - | chr6.2:43434204-43434223 | None:intergenic | 45.0% |
| ! | CATTTTGTTGGGACTTCCAG+GGG | - | chr6.2:43434202-43434221 | None:intergenic | 45.0% |
| ! | GAAAGCACGGTAAAGTTGCA+TGG | - | chr6.2:43433528-43433547 | None:intergenic | 45.0% |
| ! | GGCTTTTCTTCTCGCACTTT+TGG | + | chr6.2:43436224-43436243 | MS.gene87117:CDS | 45.0% |
| ! | TCCGGCAAAGTATTTCGCAA+AGG | + | chr6.2:43435865-43435884 | MS.gene87117:CDS | 45.0% |
| ! | TCGGTTTGTAAGGTGATGGT+TGG | + | chr6.2:43433815-43433834 | MS.gene87117:intron | 45.0% |
| ACTTCCAGGGGAGCAACATT+AGG | - | chr6.2:43434190-43434209 | None:intergenic | 50.0% | |
| AGAGCTGAGCGGAAAGTTAG+AGG | + | chr6.2:43434510-43434529 | MS.gene87117:CDS | 50.0% | |
| ATTTCTACGTCACGTCCTGC+AGG | - | chr6.2:43434846-43434865 | None:intergenic | 50.0% | |
| CACTTCCGGGGATCTTCAAA+AGG | + | chr6.2:43435010-43435029 | MS.gene87117:CDS | 50.0% | |
| CCTGTAGTGGCCAGATGTTT+CGG | - | chr6.2:43436205-43436224 | None:intergenic | 50.0% | |
| CGAAACATCTGGCCACTACA+GGG | + | chr6.2:43436203-43436222 | MS.gene87117:CDS | 50.0% | |
| CGAGAAGAAAAGCCCTGTAG+TGG | - | chr6.2:43436218-43436237 | None:intergenic | 50.0% | |
| CGCTTAGTTTCAGAGCTGAG+CGG | + | chr6.2:43434499-43434518 | MS.gene87117:CDS | 50.0% | |
| GCAAAGGTTCTCTACAGAGC+TGG | + | chr6.2:43435571-43435590 | MS.gene87117:CDS | 50.0% | |
| GCAGTTCACTCCGAAACATC+TGG | + | chr6.2:43436192-43436211 | MS.gene87117:CDS | 50.0% | |
| GGAATTTCGGTCACGCACTT+CGG | + | chr6.2:43435819-43435838 | MS.gene87117:CDS | 50.0% | |
| GTCCCACTAATACCTACCGA+CGG | - | chr6.2:43435205-43435224 | None:intergenic | 50.0% | |
| TGATCTTTCAACGCAGCGGT+TGG | - | chr6.2:43434681-43434700 | None:intergenic | 50.0% | |
| TTTCTACGTCACGTCCTGCA+GGG | - | chr6.2:43434845-43434864 | None:intergenic | 50.0% | |
| ! | AGGCCGCTTAGGTAAGTTGA+TGG | + | chr6.2:43434012-43434031 | MS.gene87117:intron | 50.0% |
| ! | CCGCTCGACCATTTTCTATC+TGG | + | chr6.2:43433978-43433997 | MS.gene87117:intron | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+AGG | - | chr6.2:43433506-43433525 | None:intergenic | 50.0% |
| ! | TCTCTAGGAGAAGGAGGAAC+TGG | - | chr6.2:43433500-43433519 | None:intergenic | 50.0% |
| !! | CCTCACCTTTTGAAGATCCC+CGG | - | chr6.2:43435018-43435037 | None:intergenic | 50.0% |
| ATATGTAAGCACCCCTCGCC+TGG | + | chr6.2:43435510-43435529 | MS.gene87117:CDS | 55.0% | |
| CATGCCTAATGTTGCTCCCC+TGG | + | chr6.2:43434183-43434202 | MS.gene87117:intron | 55.0% | |
| CCGAAACATCTGGCCACTAC+AGG | + | chr6.2:43436202-43436221 | MS.gene87117:CDS | 55.0% | |
| CCGGGGATCTTCAAAAGGTG+AGG | + | chr6.2:43435015-43435034 | MS.gene87117:intron | 55.0% | |
| CTAGGAGAAGGAGGAACTGG+AGG | - | chr6.2:43433497-43433516 | None:intergenic | 55.0% | |
| GCAGCGTGCCTATATCCAAC+AGG | + | chr6.2:43434441-43434460 | MS.gene87117:CDS | 55.0% | |
| TATTAACCTCGGGGCCTTCC+AGG | - | chr6.2:43435531-43435550 | None:intergenic | 55.0% | |
| TGAACGGAGCAGCGCACATT+TGG | + | chr6.2:43435642-43435661 | MS.gene87117:CDS | 55.0% | |
| TACGTCACGTCCTGCAGGGT+CGG | - | chr6.2:43434841-43434860 | None:intergenic | 60.0% | |
| ACGTCACGTCCTGCAGGGTC+GGG | - | chr6.2:43434840-43434859 | None:intergenic | 65.0% | |
| CTTTGGATGCCCGACCCTGC+AGG | + | chr6.2:43434828-43434847 | MS.gene87117:CDS | 65.0% | |
| GTAAGCACCCCTCGCCTGGA+AGG | + | chr6.2:43435514-43435533 | MS.gene87117:CDS | 65.0% | |
| ACCTCGGGGCCTTCCAGGCG+AGG | - | chr6.2:43435526-43435545 | None:intergenic | 75.0% | |
| CCTCGGGGCCTTCCAGGCGA+GGG | - | chr6.2:43435525-43435544 | None:intergenic | 75.0% | |
| CTCGGGGCCTTCCAGGCGAG+GGG | - | chr6.2:43435524-43435543 | None:intergenic | 75.0% | |
| ! | CCCTCGCCTGGAAGGCCCCG+AGG | + | chr6.2:43435522-43435541 | MS.gene87117:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 43433476 | 43436260 | 43433476 | ID=MS.gene87117 |
| chr6.2 | mRNA | 43433476 | 43436260 | 43433476 | ID=MS.gene87117.t1;Parent=MS.gene87117 |
| chr6.2 | exon | 43433476 | 43433551 | 43433476 | ID=MS.gene87117.t1.exon1;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43433476 | 43433551 | 43433476 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| chr6.2 | exon | 43434386 | 43434531 | 43434386 | ID=MS.gene87117.t1.exon2;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43434386 | 43434531 | 43434386 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| chr6.2 | exon | 43434816 | 43435031 | 43434816 | ID=MS.gene87117.t1.exon3;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43434816 | 43435031 | 43434816 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| chr6.2 | exon | 43435499 | 43435714 | 43435499 | ID=MS.gene87117.t1.exon4;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43435499 | 43435714 | 43435499 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| chr6.2 | exon | 43435797 | 43435886 | 43435797 | ID=MS.gene87117.t1.exon5;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43435797 | 43435886 | 43435797 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| chr6.2 | exon | 43436057 | 43436260 | 43436057 | ID=MS.gene87117.t1.exon6;Parent=MS.gene87117.t1 |
| chr6.2 | CDS | 43436057 | 43436260 | 43436057 | ID=cds.MS.gene87117.t1;Parent=MS.gene87117.t1 |
| Gene Sequence |
| Protein sequence |
