Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87955.t1 | XP_013451571.1 | 98.3 | 299 | 5 | 0 | 11 | 309 | 7 | 305 | 3.40E-144 | 521.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87955.t1 | Q8VZU2 | 75.4 | 297 | 69 | 2 | 12 | 306 | 8 | 302 | 1.0e-109 | 397.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87955.t1 | I3T5G8 | 98.3 | 299 | 5 | 0 | 11 | 309 | 7 | 305 | 2.4e-144 | 521.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene87955 | -0.820072 | 8.32E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene87955 | -0.800502 | 1.40E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene87955 | -0.803683 | 3.10E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene87955 | 0.809657 | 1.70E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene87955 | 0.837803 | 4.19E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene87955 | -0.835976 | 1.23E-56 | -1.69E-46 |
| MS.gene055719 | MS.gene87955 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene87955 | -0.815004 | 1.15E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene87955 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene059837 | MS.gene87955 | -0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene87955 | -0.807526 | 4.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66057 | MS.gene87955 | PPI |
| MS.gene87955 | MS.gene56256 | PPI |
| MS.gene87955 | MS.gene78212 | PPI |
| MS.gene63514 | MS.gene87955 | PPI |
| MS.gene51627 | MS.gene87955 | PPI |
| MS.gene77217 | MS.gene87955 | PPI |
| MS.gene009458 | MS.gene87955 | PPI |
| MS.gene65117 | MS.gene87955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87955.t1 | MTR_6g028140 | 98.328 | 299 | 5 | 0 | 11 | 309 | 7 | 305 | 0.0 | 601 |
| MS.gene87955.t1 | MTR_2g088700 | 59.364 | 283 | 114 | 1 | 22 | 303 | 22 | 304 | 9.59e-123 | 354 |
| MS.gene87955.t1 | MTR_2g088700 | 63.604 | 283 | 102 | 1 | 22 | 303 | 22 | 304 | 3.17e-120 | 347 |
| MS.gene87955.t1 | MTR_2g012270 | 47.253 | 273 | 142 | 1 | 28 | 300 | 25 | 295 | 1.62e-90 | 272 |
| MS.gene87955.t1 | MTR_4g090900 | 50.763 | 262 | 125 | 1 | 23 | 284 | 23 | 280 | 1.22e-89 | 270 |
| MS.gene87955.t1 | MTR_1g056560 | 47.761 | 268 | 140 | 0 | 36 | 303 | 43 | 310 | 3.70e-80 | 247 |
| MS.gene87955.t1 | MTR_1g056550 | 44.245 | 278 | 155 | 0 | 6 | 283 | 9 | 286 | 1.56e-78 | 241 |
| MS.gene87955.t1 | MTR_5g012010 | 43.511 | 262 | 147 | 1 | 22 | 282 | 35 | 296 | 5.87e-73 | 228 |
| MS.gene87955.t1 | MTR_7g106420 | 44.534 | 247 | 137 | 0 | 38 | 284 | 28 | 274 | 3.02e-70 | 220 |
| MS.gene87955.t1 | MTR_5g020670 | 33.077 | 260 | 163 | 3 | 23 | 281 | 27 | 276 | 1.39e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87955.t1 | AT3G03800 | 74.247 | 299 | 76 | 1 | 12 | 309 | 8 | 306 | 2.40e-154 | 434 |
| MS.gene87955.t1 | AT3G03800 | 74.247 | 299 | 76 | 1 | 12 | 309 | 8 | 306 | 2.40e-154 | 434 |
| MS.gene87955.t1 | AT5G08080 | 75.421 | 297 | 69 | 2 | 12 | 306 | 8 | 302 | 2.43e-138 | 393 |
| MS.gene87955.t1 | AT5G08080 | 75.421 | 297 | 69 | 2 | 12 | 306 | 8 | 302 | 2.43e-138 | 393 |
| MS.gene87955.t1 | AT5G08080 | 71.429 | 308 | 73 | 4 | 12 | 306 | 8 | 313 | 1.31e-135 | 387 |
| MS.gene87955.t1 | AT3G11820 | 48.772 | 285 | 145 | 1 | 20 | 303 | 25 | 309 | 2.00e-87 | 266 |
| MS.gene87955.t1 | AT4G03330 | 50.763 | 262 | 127 | 1 | 23 | 284 | 23 | 282 | 2.40e-87 | 264 |
| MS.gene87955.t1 | AT3G11820 | 49.632 | 272 | 137 | 0 | 32 | 303 | 7 | 278 | 1.79e-85 | 259 |
| MS.gene87955.t1 | AT1G61290 | 45.035 | 282 | 149 | 2 | 23 | 304 | 23 | 298 | 9.68e-85 | 257 |
| MS.gene87955.t1 | AT1G61290 | 45.035 | 282 | 149 | 2 | 23 | 304 | 23 | 298 | 9.68e-85 | 257 |
| MS.gene87955.t1 | AT1G11250 | 48.669 | 263 | 130 | 1 | 22 | 284 | 17 | 274 | 5.35e-84 | 255 |
| MS.gene87955.t1 | AT5G08080 | 72.821 | 195 | 49 | 2 | 12 | 204 | 8 | 200 | 3.96e-83 | 250 |
| MS.gene87955.t1 | AT5G08080 | 72.821 | 195 | 49 | 2 | 12 | 204 | 8 | 200 | 3.96e-83 | 250 |
| MS.gene87955.t1 | AT3G52400 | 49.270 | 274 | 139 | 0 | 30 | 303 | 35 | 308 | 4.89e-78 | 241 |
| MS.gene87955.t1 | AT1G08560 | 40.613 | 261 | 150 | 3 | 23 | 282 | 30 | 286 | 1.34e-63 | 203 |
| MS.gene87955.t1 | AT2G18260 | 34.328 | 268 | 165 | 4 | 35 | 298 | 44 | 304 | 4.80e-49 | 166 |
| MS.gene87955.t1 | AT2G18260 | 34.328 | 268 | 165 | 4 | 35 | 298 | 44 | 304 | 4.80e-49 | 166 |
Find 63 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTCTTTGCAGACATTTA+TGG | 0.204217 | 6.1:+10845767 | MS.gene87955:intron |
| GGAGAAGATGGCTGAATTTC+AGG | 0.226938 | 6.1:+10844753 | MS.gene87955:CDS |
| CTTGGATAGTTTCTTCAAAA+AGG | 0.237559 | 6.1:+10843333 | MS.gene87955:CDS |
| CAAACCATGGGTTACCAAAA+AGG | 0.240236 | 6.1:+10846433 | MS.gene87955:CDS |
| TGCAAAGAAACTCAAGAAAA+TGG | 0.259809 | 6.1:+10846351 | MS.gene87955:CDS |
| GACATTGAGTTGGGAGAATA+TGG | 0.285392 | 6.1:+10843289 | MS.gene87955:CDS |
| GTTGAGAGACGTGTATTTAC+AGG | 0.293815 | 6.1:+10844902 | MS.gene87955:CDS |
| GGAGAATATGGAAGGAATTC+AGG | 0.293975 | 6.1:+10843301 | MS.gene87955:CDS |
| CTTGTTCCTGAATAGCCTTC+TGG | 0.311534 | 6.1:-10845187 | None:intergenic |
| CTTCATGGATGGCTTCTCTC+AGG | 0.356838 | 6.1:-10844865 | None:intergenic |
| TGTCGCAGAATTTGGCTAAT+AGG | 0.360483 | 6.1:+10844166 | MS.gene87955:intron |
| TTTGTCTAGCTCTTCAACTT+TGG | 0.365108 | 6.1:-10844066 | None:intergenic |
| ACCCTTCATGGCGGGAGCTT+TGG | 0.365120 | 6.1:-10843727 | None:intergenic |
| GAAAATTTGTTCACTGTCTC+CGG | 0.366933 | 6.1:-10845165 | None:intergenic |
| CAACCTCTCGATATTCTTCA+TGG | 0.373177 | 6.1:-10844880 | None:intergenic |
| CAGAAACCTGCTTGTGGAAA+AGG | 0.378140 | 6.1:+10844189 | MS.gene87955:CDS |
| TTACCTGGAGCTTTCTCAAA+AGG | 0.414308 | 6.1:-10843577 | None:intergenic |
| TCATAGTAACTAACCCTTCA+TGG | 0.437317 | 6.1:-10843739 | None:intergenic |
| TCACAGCCTTGGACTCCTCA+TGG | 0.443540 | 6.1:-10843704 | None:intergenic |
| GGGAGCTTTGGTCACAGCCT+TGG | 0.448244 | 6.1:-10843715 | None:intergenic |
| TTGTCGTTGCTGTTCTTGAC+CGG | 0.478266 | 6.1:-10844224 | None:intergenic |
| ATCCCTCGTGGTCGTGGAGG+TGG | 0.479586 | 6.1:+10843265 | MS.gene87955:CDS |
| TTCATGGATGGCTTCTCTCA+GGG | 0.480734 | 6.1:-10844864 | None:intergenic |
| TTTGAGATCCCTCGTGGTCG+TGG | 0.486500 | 6.1:+10843259 | MS.gene87955:CDS |
| CACAGCCTTGGACTCCTCAT+GGG | 0.487170 | 6.1:-10843703 | None:intergenic |
| GGAAGGAATTCAGGAGAGCT+TGG | 0.498053 | 6.1:+10843310 | MS.gene87955:CDS |
| GTCGTTCTTGAATTTCTGCA+AGG | 0.506487 | 6.1:-10845619 | None:intergenic |
| AAAGAAACTGAAGGAGAAGA+TGG | 0.512507 | 6.1:+10844741 | MS.gene87955:CDS |
| CTCTCGATATTCTTCATGGA+TGG | 0.516536 | 6.1:-10844876 | None:intergenic |
| TGCAGCTATAAAGCAGAGAA+TGG | 0.520725 | 6.1:+10843998 | MS.gene87955:intron |
| AGGCAATAATTCCCTCCAAA+AGG | 0.521264 | 6.1:+10846319 | MS.gene87955:CDS |
| GACCAAAGCTCCCGCCATGA+AGG | 0.521556 | 6.1:+10843725 | MS.gene87955:CDS |
| TGGAGGTGGTGACATTGAGT+TGG | 0.525299 | 6.1:+10843279 | MS.gene87955:CDS |
| TCAGGAACAAGGACGAGGCC+AGG | 0.529870 | 6.1:+10845199 | MS.gene87955:CDS |
| TGTTTCTGTCATCAAACCAT+GGG | 0.533401 | 6.1:+10846421 | MS.gene87955:CDS |
| TCGTTCTTGAATTTCTGCAA+GGG | 0.536427 | 6.1:-10845618 | None:intergenic |
| ATTGACAGATTAATTGAGAC+CGG | 0.539615 | 6.1:+10845146 | MS.gene87955:CDS |
| GAATTCAGGAGAGCTTGGCT+TGG | 0.539903 | 6.1:+10843315 | MS.gene87955:CDS |
| AGTAACTAACCCTTCATGGC+GGG | 0.541178 | 6.1:-10843735 | None:intergenic |
| GAAAAGGATCAGCTGTTGAC+CGG | 0.548471 | 6.1:+10844205 | MS.gene87955:CDS |
| TTGTTTCTGTCATCAAACCA+TGG | 0.549299 | 6.1:+10846420 | MS.gene87955:CDS |
| GAAACTGCTTGATTTACAGC+AGG | 0.549773 | 6.1:+10845667 | MS.gene87955:CDS |
| AGTTGAAGAGCTAGACAAAG+AGG | 0.554537 | 6.1:+10844070 | MS.gene87955:CDS |
| CAGAAGGCTATTCAGGAACA+AGG | 0.557963 | 6.1:+10845188 | MS.gene87955:CDS |
| ACCAAAGCTCCCGCCATGAA+GGG | 0.567202 | 6.1:+10843726 | MS.gene87955:CDS |
| AACAATGAGAAGTATCATGA+TGG | 0.567362 | 6.1:-10846384 | None:intergenic |
| GGAGGTGGTGACATTGAGTT+GGG | 0.570184 | 6.1:+10843280 | MS.gene87955:CDS |
| GCTTGACAACATAGAATCAC+AGG | 0.577422 | 6.1:+10845824 | MS.gene87955:CDS |
| GGATGCCCATGAGGAGTCCA+AGG | 0.583800 | 6.1:+10843698 | MS.gene87955:intron |
| AACGGGCGCAAGAGCTGATG+AGG | 0.586140 | 6.1:+10845036 | MS.gene87955:CDS |
| TTGAGTTGGGAGAATATGGA+AGG | 0.601130 | 6.1:+10843293 | MS.gene87955:CDS |
| AATAGGCAGAAACCTGCTTG+TGG | 0.617915 | 6.1:+10844183 | MS.gene87955:CDS |
| GGGCGCAAGAGCTGATGAGG+AGG | 0.623736 | 6.1:+10845039 | MS.gene87955:CDS |
| GCTATTCAGGAACAAGGACG+AGG | 0.633215 | 6.1:+10845194 | MS.gene87955:CDS |
| GAGATCCCTCGTGGTCGTGG+AGG | 0.639075 | 6.1:+10843262 | MS.gene87955:CDS |
| GCAGTAGATCATGTGCAGCA+AGG | 0.646558 | 6.1:+10846299 | MS.gene87955:CDS |
| CTTTATGCAGGATGCCCATG+AGG | 0.651012 | 6.1:+10843689 | MS.gene87955:intron |
| TCACCACCTCCACGACCACG+AGG | 0.693877 | 6.1:-10843268 | None:intergenic |
| GAATCGTTTGAGATCCCTCG+TGG | 0.704785 | 6.1:+10843253 | MS.gene87955:CDS |
| CATCCATGAAGAATATCGAG+AGG | 0.708099 | 6.1:+10844877 | MS.gene87955:CDS |
| GCAGTGTTAGTTGATGCACA+AGG | 0.712002 | 6.1:+10845795 | MS.gene87955:CDS |
| TAGTAACTAACCCTTCATGG+CGG | 0.717312 | 6.1:-10843736 | None:intergenic |
| CACCACCTCCACGACCACGA+GGG | 0.725442 | 6.1:-10843267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTGTATAATTTG+CGG | + | chr6.1:10843436-10843455 | MS.gene87955:intron | 10.0% |
| !!! | TAAAAAATTTCTAAGAAATA+AGG | - | chr6.1:10845255-10845274 | None:intergenic | 10.0% |
| !! | AACTGATTATATAGTAAATT+TGG | + | chr6.1:10844480-10844499 | MS.gene87955:intron | 15.0% |
| !! | ATTATAGAATACAAAAAAGA+AGG | - | chr6.1:10844705-10844724 | None:intergenic | 15.0% |
| !! | TATGATAAAAGAAAAATCAT+CGG | + | chr6.1:10843837-10843856 | MS.gene87955:intron | 15.0% |
| !!! | ATTGTTATTATGATCATAAT+TGG | + | chr6.1:10844651-10844670 | MS.gene87955:intron | 15.0% |
| !!! | TCTCTTAAAATTTTAAAAAG+TGG | - | chr6.1:10845410-10845429 | None:intergenic | 15.0% |
| !!! | TTAATTTGATTTTCTTTTTC+AGG | + | chr6.1:10843231-10843250 | MS.gene87955:intron | 15.0% |
| !!! | TTTACTTGAATTTTCATTAA+TGG | + | chr6.1:10845068-10845087 | MS.gene87955:intron | 15.0% |
| !! | AATTTCAAATGTCAACTATT+TGG | + | chr6.1:10846036-10846055 | MS.gene87955:intron | 20.0% |
| !! | ACATGAAAGTTATAATCATT+AGG | - | chr6.1:10845752-10845771 | None:intergenic | 20.0% |
| !! | ATTAAAAATATACCTTTGCA+AGG | + | chr6.1:10845552-10845571 | MS.gene87955:intron | 20.0% |
| !! | GAGTTATATTATGTAGATAA+TGG | + | chr6.1:10845592-10845611 | MS.gene87955:intron | 20.0% |
| !! | TTAAACGATAGATAAAACAA+TGG | - | chr6.1:10844263-10844282 | None:intergenic | 20.0% |
| !! | TTATGTTGATCATAAACAAA+AGG | - | chr6.1:10843817-10843836 | None:intergenic | 20.0% |
| !!! | AAAATTTCTAAGAAATAAGG+AGG | - | chr6.1:10845252-10845271 | None:intergenic | 20.0% |
| !!! | AAATTTCTAAGAAATAAGGA+GGG | - | chr6.1:10845251-10845270 | None:intergenic | 20.0% |
| !!! | AGTAAATTTGGTAATTCAAA+AGG | + | chr6.1:10844492-10844511 | MS.gene87955:intron | 20.0% |
| !!! | TAACAATTTCATGTTTTCTA+TGG | + | chr6.1:10844996-10845015 | MS.gene87955:intron | 20.0% |
| ! | AACTCATCAATCAAACTAAT+TGG | - | chr6.1:10846250-10846269 | None:intergenic | 25.0% |
| ! | AGAAAGTAATGTTGTATACA+AGG | + | chr6.1:10845274-10845293 | MS.gene87955:intron | 25.0% |
| ! | AGTTGAATAAGAAATTGAGA+AGG | - | chr6.1:10845495-10845514 | None:intergenic | 25.0% |
| ! | CTATTGAACAATTAATCGAT+AGG | - | chr6.1:10843519-10843538 | None:intergenic | 25.0% |
| ! | GAAAGAATTACATGAAAGAA+GGG | - | chr6.1:10843872-10843891 | None:intergenic | 25.0% |
| ! | GAAAGTAATGTTGTATACAA+GGG | + | chr6.1:10845275-10845294 | MS.gene87955:intron | 25.0% |
| ! | TCTTAATTAAGTTATCCCAT+TGG | + | chr6.1:10844952-10844971 | MS.gene87955:intron | 25.0% |
| ! | TGCATGAAAGTTTAATTGAA+AGG | - | chr6.1:10845705-10845724 | None:intergenic | 25.0% |
| ! | TGTACTGAAAGAAAGAAAAT+TGG | + | chr6.1:10844550-10844569 | MS.gene87955:intron | 25.0% |
| ! | TTACATTTGTGATGAAATTC+AGG | + | chr6.1:10846268-10846287 | MS.gene87955:intron | 25.0% |
| ! | TTCTCAATTTCTTATTCAAC+TGG | + | chr6.1:10845494-10845513 | MS.gene87955:intron | 25.0% |
| !! | AATTTCTAAGAAATAAGGAG+GGG | - | chr6.1:10845250-10845269 | None:intergenic | 25.0% |
| !! | CTATCGATTAATTGTTCAAT+AGG | + | chr6.1:10843517-10843536 | MS.gene87955:intron | 25.0% |
| !!! | ATATGAGTAAAGTTCTAAAC+TGG | + | chr6.1:10845894-10845913 | MS.gene87955:intron | 25.0% |
| !!! | GATCTCTACTAAAAGTATTT+CGG | + | chr6.1:10844096-10844115 | MS.gene87955:intron | 25.0% |
| !!! | TAAGTTGATTTTGACATTCA+AGG | + | chr6.1:10845321-10845340 | MS.gene87955:intron | 25.0% |
| !!! | TTTGATTTTTGAAGAGTACA+GGG | + | chr6.1:10843126-10843145 | MS.gene87955:CDS | 25.0% |
| !!! | TTTTGATTTTTGAAGAGTAC+AGG | + | chr6.1:10843125-10843144 | MS.gene87955:CDS | 25.0% |
| AAAATTGTAATCGCTGTTTG+TGG | - | chr6.1:10844621-10844640 | None:intergenic | 30.0% | |
| AAACTAATTGGATCTGGATT+TGG | - | chr6.1:10846238-10846257 | None:intergenic | 30.0% | |
| AAAGAAGGTAAATACGAGTT+TGG | - | chr6.1:10844690-10844709 | None:intergenic | 30.0% | |
| AAATCGTGCTAATTAACCAA+TGG | - | chr6.1:10844971-10844990 | None:intergenic | 30.0% | |
| AACTATTTGGTCCTCAAAAA+TGG | + | chr6.1:10846049-10846068 | MS.gene87955:intron | 30.0% | |
| AAGATGTCGATAGTTTAACT+AGG | + | chr6.1:10843164-10843183 | MS.gene87955:intron | 30.0% | |
| AATCGTGCTAATTAACCAAT+GGG | - | chr6.1:10844970-10844989 | None:intergenic | 30.0% | |
| AGTCGTTTATATAAGTCAGA+CGG | - | chr6.1:10846174-10846193 | None:intergenic | 30.0% | |
| ATTGACAGATTAATTGAGAC+CGG | + | chr6.1:10845146-10845165 | MS.gene87955:CDS | 30.0% | |
| ATTGGTTAATTAGCACGATT+TGG | + | chr6.1:10844970-10844989 | MS.gene87955:intron | 30.0% | |
| CGAAAGAATTACATGAAAGA+AGG | - | chr6.1:10843873-10843892 | None:intergenic | 30.0% | |
| CTTGGATAGTTTCTTCAAAA+AGG | + | chr6.1:10843333-10843352 | MS.gene87955:CDS | 30.0% | |
| GATCATTCGATTTAGATCAA+TGG | + | chr6.1:10846107-10846126 | MS.gene87955:intron | 30.0% | |
| GTGTTTGCGAAAAAAAAACA+CGG | + | chr6.1:10845916-10845935 | MS.gene87955:intron | 30.0% | |
| TCAATCAAACTAATTGGATC+TGG | - | chr6.1:10846244-10846263 | None:intergenic | 30.0% | |
| TCGTTTAAACACTTAACACT+AGG | + | chr6.1:10844275-10844294 | MS.gene87955:intron | 30.0% | |
| TGCAAAGAAACTCAAGAAAA+TGG | + | chr6.1:10846351-10846370 | MS.gene87955:CDS | 30.0% | |
| TTTCAGTACATGTGAGATTA+AGG | - | chr6.1:10844540-10844559 | None:intergenic | 30.0% | |
| ! | ATGTGAGATTAAGGTATTCA+TGG | - | chr6.1:10844531-10844550 | None:intergenic | 30.0% |
| ! | ATTTCTAAGAAATAAGGAGG+GGG | - | chr6.1:10845249-10845268 | None:intergenic | 30.0% |
| ! | CAAACAGCGATTACAATTTT+TGG | + | chr6.1:10844621-10844640 | MS.gene87955:intron | 30.0% |
| ! | GTTTTTGTGATTGTCAGTAA+CGG | + | chr6.1:10845018-10845037 | MS.gene87955:intron | 30.0% |
| ! | TTAAAAAGTGGTTTTCATCG+TGG | - | chr6.1:10845398-10845417 | None:intergenic | 30.0% |
| ! | TTGGTAATTCAAAAGGAACT+GGG | + | chr6.1:10844499-10844518 | MS.gene87955:intron | 30.0% |
| ! | TTTGCATTTTCTTTGCCTTT+TGG | - | chr6.1:10846337-10846356 | None:intergenic | 30.0% |
| ! | TTTGGTAATTCAAAAGGAAC+TGG | + | chr6.1:10844498-10844517 | MS.gene87955:intron | 30.0% |
| ! | TTTTTGTGATTGTCAGTAAC+GGG | + | chr6.1:10845019-10845038 | MS.gene87955:intron | 30.0% |
| !! | AACAATGAGAAGTATCATGA+TGG | - | chr6.1:10846387-10846406 | None:intergenic | 30.0% |
| !! | GAAATCCAAATCCATTTTTG+AGG | - | chr6.1:10846063-10846082 | None:intergenic | 30.0% |
| AAAGAAACTGAAGGAGAAGA+TGG | + | chr6.1:10844741-10844760 | MS.gene87955:CDS | 35.0% | |
| AAAGTAAAGAGAGAAGAACC+TGG | - | chr6.1:10845220-10845239 | None:intergenic | 35.0% | |
| ACATTATGTGTCGCAGAATT+TGG | + | chr6.1:10844158-10844177 | MS.gene87955:intron | 35.0% | |
| ACTGTGAAGGAAAATTTACC+TGG | - | chr6.1:10843595-10843614 | None:intergenic | 35.0% | |
| CAATTACTACCAAGTGAAGT+CGG | - | chr6.1:10845463-10845482 | None:intergenic | 35.0% | |
| CATGTCTTTGCAGACATTTA+TGG | + | chr6.1:10845767-10845786 | MS.gene87955:intron | 35.0% | |
| TAGTTAGTCATCAACTGTGA+AGG | - | chr6.1:10843608-10843627 | None:intergenic | 35.0% | |
| TCAACTTTCAGAGACCAAAT+CGG | - | chr6.1:10845945-10845964 | None:intergenic | 35.0% | |
| TCATAGTAACTAACCCTTCA+TGG | - | chr6.1:10843742-10843761 | None:intergenic | 35.0% | |
| TCGTTCTTGAATTTCTGCAA+GGG | - | chr6.1:10845621-10845640 | None:intergenic | 35.0% | |
| TTAAGTCCTTCATACATGCA+CGG | + | chr6.1:10844422-10844441 | MS.gene87955:intron | 35.0% | |
| ! | AAACCATGGGTTACCAAAAA+GGG | + | chr6.1:10846434-10846453 | MS.gene87955:CDS | 35.0% |
| ! | AATTTTCCAGAAGGCTATTC+AGG | + | chr6.1:10845181-10845200 | MS.gene87955:CDS | 35.0% |
| ! | ACTACTCAAAACAGCTTTTG+AGG | + | chr6.1:10845431-10845450 | MS.gene87955:intron | 35.0% |
| ! | ATAATCAGTTAGCCTAGAAG+CGG | - | chr6.1:10844470-10844489 | None:intergenic | 35.0% |
| ! | CAGTGAACAAATTTTCCAGA+AGG | + | chr6.1:10845172-10845191 | MS.gene87955:CDS | 35.0% |
| ! | CATTTTCTTTGCCTTTTGGA+GGG | - | chr6.1:10846333-10846352 | None:intergenic | 35.0% |
| ! | GAAAATTTGTTCACTGTCTC+CGG | - | chr6.1:10845168-10845187 | None:intergenic | 35.0% |
| ! | TCTCCTTCAGTTTCTTTTTC+AGG | - | chr6.1:10844738-10844757 | None:intergenic | 35.0% |
| ! | TGTTTCTGTCATCAAACCAT+GGG | + | chr6.1:10846421-10846440 | MS.gene87955:CDS | 35.0% |
| ! | TTGGTCCTCAAAAATGGATT+TGG | + | chr6.1:10846055-10846074 | MS.gene87955:intron | 35.0% |
| ! | TTTTATGCACACCTTTATGC+AGG | + | chr6.1:10843677-10843696 | MS.gene87955:intron | 35.0% |
| !! | CTCCTTCAGTTTCTTTTTCA+GGG | - | chr6.1:10844737-10844756 | None:intergenic | 35.0% |
| !! | TTGTTTCTGTCATCAAACCA+TGG | + | chr6.1:10846420-10846439 | MS.gene87955:CDS | 35.0% |
| !! | TTTGTCTAGCTCTTCAACTT+TGG | - | chr6.1:10844069-10844088 | None:intergenic | 35.0% |
| AAAAAACACGGAGACCGATT+TGG | + | chr6.1:10845928-10845947 | MS.gene87955:intron | 40.0% | |
| AACCATTGATCTGTAACAGC+AGG | - | chr6.1:10846085-10846104 | None:intergenic | 40.0% | |
| AGGCAATAATTCCCTCCAAA+AGG | + | chr6.1:10846319-10846338 | MS.gene87955:CDS | 40.0% | |
| AGTTGAAGAGCTAGACAAAG+AGG | + | chr6.1:10844070-10844089 | MS.gene87955:CDS | 40.0% | |
| ATTCTCAGACCTCAACAAGT+AGG | - | chr6.1:10844398-10844417 | None:intergenic | 40.0% | |
| CAACCTCTCGATATTCTTCA+TGG | - | chr6.1:10844883-10844902 | None:intergenic | 40.0% | |
| CATCCATGAAGAATATCGAG+AGG | + | chr6.1:10844877-10844896 | MS.gene87955:CDS | 40.0% | |
| CTCTCGATATTCTTCATGGA+TGG | - | chr6.1:10844879-10844898 | None:intergenic | 40.0% | |
| GAAACTGCTTGATTTACAGC+AGG | + | chr6.1:10845667-10845686 | MS.gene87955:CDS | 40.0% | |
| GACGCTAATTATGCTATGTC+AGG | + | chr6.1:10844331-10844350 | MS.gene87955:intron | 40.0% | |
| GATCAAGATGACTGAACCTT+AGG | + | chr6.1:10844590-10844609 | MS.gene87955:intron | 40.0% | |
| GCTGTTTGTGGAAAATCCTA+AGG | - | chr6.1:10844609-10844628 | None:intergenic | 40.0% | |
| GCTTGACAACATAGAATCAC+AGG | + | chr6.1:10845824-10845843 | MS.gene87955:CDS | 40.0% | |
| GGAGAATATGGAAGGAATTC+AGG | + | chr6.1:10843301-10843320 | MS.gene87955:CDS | 40.0% | |
| GTCGTTCTTGAATTTCTGCA+AGG | - | chr6.1:10845622-10845641 | None:intergenic | 40.0% | |
| GTTGAGAGACGTGTATTTAC+AGG | + | chr6.1:10844902-10844921 | MS.gene87955:CDS | 40.0% | |
| TAGTAACTAACCCTTCATGG+CGG | - | chr6.1:10843739-10843758 | None:intergenic | 40.0% | |
| TGCAGCTATAAAGCAGAGAA+TGG | + | chr6.1:10843998-10844017 | MS.gene87955:intron | 40.0% | |
| TGCCCTGAAAAAGAAACTGA+AGG | + | chr6.1:10844732-10844751 | MS.gene87955:CDS | 40.0% | |
| TGGAAGAAAATGCGTGCTTA+AGG | + | chr6.1:10845088-10845107 | MS.gene87955:intron | 40.0% | |
| TGTCGCAGAATTTGGCTAAT+AGG | + | chr6.1:10844166-10844185 | MS.gene87955:intron | 40.0% | |
| TTACCTGGAGCTTTCTCAAA+AGG | - | chr6.1:10843580-10843599 | None:intergenic | 40.0% | |
| TTCCTGCTGTTACAGATCAA+TGG | + | chr6.1:10846080-10846099 | MS.gene87955:intron | 40.0% | |
| ! | AAGATGGCTGAATTTCAGGT+AGG | + | chr6.1:10844757-10844776 | MS.gene87955:intron | 40.0% |
| ! | CAAACCATGGGTTACCAAAA+AGG | + | chr6.1:10846433-10846452 | MS.gene87955:CDS | 40.0% |
| ! | GATGTCATTCCTACTTGTTG+AGG | + | chr6.1:10844386-10844405 | MS.gene87955:intron | 40.0% |
| ! | GCATTTTCTTTGCCTTTTGG+AGG | - | chr6.1:10846334-10846353 | None:intergenic | 40.0% |
| !! | GACATTGAGTTGGGAGAATA+TGG | + | chr6.1:10843289-10843308 | MS.gene87955:CDS | 40.0% |
| !! | TAACCTTTTGAGAAAGCTCC+AGG | + | chr6.1:10843574-10843593 | MS.gene87955:CDS | 40.0% |
| !! | TTGAGTTGGGAGAATATGGA+AGG | + | chr6.1:10843293-10843312 | MS.gene87955:CDS | 40.0% |
| AATAGGCAGAAACCTGCTTG+TGG | + | chr6.1:10844183-10844202 | MS.gene87955:CDS | 45.0% | |
| AGTAACTAACCCTTCATGGC+GGG | - | chr6.1:10843738-10843757 | None:intergenic | 45.0% | |
| CAGAAACCTGCTTGTGGAAA+AGG | + | chr6.1:10844189-10844208 | MS.gene87955:CDS | 45.0% | |
| CAGAAGGCTATTCAGGAACA+AGG | + | chr6.1:10845188-10845207 | MS.gene87955:CDS | 45.0% | |
| CTTGTTCCTGAATAGCCTTC+TGG | - | chr6.1:10845190-10845209 | None:intergenic | 45.0% | |
| GAAAAGGATCAGCTGTTGAC+CGG | + | chr6.1:10844205-10844224 | MS.gene87955:CDS | 45.0% | |
| GGAGAAGATGGCTGAATTTC+AGG | + | chr6.1:10844753-10844772 | MS.gene87955:CDS | 45.0% | |
| TATGTTTGCGTTCCGCTTCT+AGG | + | chr6.1:10844455-10844474 | MS.gene87955:intron | 45.0% | |
| TTCATGGATGGCTTCTCTCA+GGG | - | chr6.1:10844867-10844886 | None:intergenic | 45.0% | |
| ! | GCAGTGTTAGTTGATGCACA+AGG | + | chr6.1:10845795-10845814 | MS.gene87955:CDS | 45.0% |
| ! | TTGTCGTTGCTGTTCTTGAC+CGG | - | chr6.1:10844227-10844246 | None:intergenic | 45.0% |
| ! | TTTGAAGAGTACAGGGTGTG+TGG | + | chr6.1:10843133-10843152 | MS.gene87955:intron | 45.0% |
| !! | AAATAATTTGATTAATTAAT+AGG | - | chr6.1:10843425-10843444 | None:intergenic | 5.0% |
| CTCATGGGCATCCTGCATAA+AGG | - | chr6.1:10843691-10843710 | None:intergenic | 50.0% | |
| CTTCATGGATGGCTTCTCTC+AGG | - | chr6.1:10844868-10844887 | None:intergenic | 50.0% | |
| CTTTATGCAGGATGCCCATG+AGG | + | chr6.1:10843689-10843708 | MS.gene87955:intron | 50.0% | |
| GAACGACCGTGCATGTATGA+AGG | - | chr6.1:10844431-10844450 | None:intergenic | 50.0% | |
| GAATTCAGGAGAGCTTGGCT+TGG | + | chr6.1:10843315-10843334 | MS.gene87955:CDS | 50.0% | |
| GCAGTAGATCATGTGCAGCA+AGG | + | chr6.1:10846299-10846318 | MS.gene87955:CDS | 50.0% | |
| GCTATTCAGGAACAAGGACG+AGG | + | chr6.1:10845194-10845213 | MS.gene87955:CDS | 50.0% | |
| GGAAGGAATTCAGGAGAGCT+TGG | + | chr6.1:10843310-10843329 | MS.gene87955:CDS | 50.0% | |
| GGAGGTGGTGACATTGAGTT+GGG | + | chr6.1:10843280-10843299 | MS.gene87955:CDS | 50.0% | |
| TGGAGGTGGTGACATTGAGT+TGG | + | chr6.1:10843279-10843298 | MS.gene87955:CDS | 50.0% | |
| TGTGAGACGTGACCTTGCAA+AGG | - | chr6.1:10845567-10845586 | None:intergenic | 50.0% | |
| ! | GAATCGTTTGAGATCCCTCG+TGG | + | chr6.1:10843253-10843272 | MS.gene87955:CDS | 50.0% |
| ! | GCTGATCCTTTTCCACAAGC+AGG | - | chr6.1:10844198-10844217 | None:intergenic | 50.0% |
| !! | AGGATCTCACCGACTTCACT+TGG | + | chr6.1:10845451-10845470 | MS.gene87955:intron | 50.0% |
| !! | GCACCCTTTTTGGTAACCCA+TGG | - | chr6.1:10846440-10846459 | None:intergenic | 50.0% |
| ACCAAAGCTCCCGCCATGAA+GGG | + | chr6.1:10843726-10843745 | MS.gene87955:CDS | 55.0% | |
| CACAGCCTTGGACTCCTCAT+GGG | - | chr6.1:10843706-10843725 | None:intergenic | 55.0% | |
| TCACAGCCTTGGACTCCTCA+TGG | - | chr6.1:10843707-10843726 | None:intergenic | 55.0% | |
| ! | TTTGAGATCCCTCGTGGTCG+TGG | + | chr6.1:10843259-10843278 | MS.gene87955:CDS | 55.0% |
| AACGGGCGCAAGAGCTGATG+AGG | + | chr6.1:10845036-10845055 | MS.gene87955:CDS | 60.0% | |
| GACCAAAGCTCCCGCCATGA+AGG | + | chr6.1:10843725-10843744 | MS.gene87955:CDS | 60.0% | |
| GGATGCCCATGAGGAGTCCA+AGG | + | chr6.1:10843698-10843717 | MS.gene87955:intron | 60.0% | |
| TCAGGAACAAGGACGAGGCC+AGG | + | chr6.1:10845199-10845218 | MS.gene87955:CDS | 60.0% | |
| ! | ACCCTTCATGGCGGGAGCTT+TGG | - | chr6.1:10843730-10843749 | None:intergenic | 60.0% |
| ! | GGGAGCTTTGGTCACAGCCT+TGG | - | chr6.1:10843718-10843737 | None:intergenic | 60.0% |
| ATCCCTCGTGGTCGTGGAGG+TGG | + | chr6.1:10843265-10843284 | MS.gene87955:CDS | 65.0% | |
| CACCACCTCCACGACCACGA+GGG | - | chr6.1:10843270-10843289 | None:intergenic | 65.0% | |
| GAGATCCCTCGTGGTCGTGG+AGG | + | chr6.1:10843262-10843281 | MS.gene87955:CDS | 65.0% | |
| GGGCGCAAGAGCTGATGAGG+AGG | + | chr6.1:10845039-10845058 | MS.gene87955:CDS | 65.0% | |
| TCACCACCTCCACGACCACG+AGG | - | chr6.1:10843271-10843290 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 10843118 | 10846463 | 10843118 | ID=MS.gene87955 |
| chr6.1 | mRNA | 10843118 | 10846463 | 10843118 | ID=MS.gene87955.t1;Parent=MS.gene87955 |
| chr6.1 | exon | 10843118 | 10843147 | 10843118 | ID=MS.gene87955.t1.exon1;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10843118 | 10843147 | 10843118 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10843253 | 10843354 | 10843253 | ID=MS.gene87955.t1.exon2;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10843253 | 10843354 | 10843253 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10843539 | 10843595 | 10843539 | ID=MS.gene87955.t1.exon3;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10843539 | 10843595 | 10843539 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10843699 | 10843747 | 10843699 | ID=MS.gene87955.t1.exon4;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10843699 | 10843747 | 10843699 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10844003 | 10844091 | 10844003 | ID=MS.gene87955.t1.exon5;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10844003 | 10844091 | 10844003 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10844174 | 10844247 | 10844174 | ID=MS.gene87955.t1.exon6;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10844174 | 10844247 | 10844174 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10844732 | 10844774 | 10844732 | ID=MS.gene87955.t1.exon7;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10844732 | 10844774 | 10844732 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10844863 | 10844923 | 10844863 | ID=MS.gene87955.t1.exon8;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10844863 | 10844923 | 10844863 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10845035 | 10845060 | 10845035 | ID=MS.gene87955.t1.exon9;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10845035 | 10845060 | 10845035 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10845143 | 10845220 | 10845143 | ID=MS.gene87955.t1.exon10;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10845143 | 10845220 | 10845143 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10845608 | 10845688 | 10845608 | ID=MS.gene87955.t1.exon11;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10845608 | 10845688 | 10845608 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10845780 | 10845845 | 10845780 | ID=MS.gene87955.t1.exon12;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10845780 | 10845845 | 10845780 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| chr6.1 | exon | 10846290 | 10846463 | 10846290 | ID=MS.gene87955.t1.exon13;Parent=MS.gene87955.t1 |
| chr6.1 | CDS | 10846290 | 10846463 | 10846290 | ID=cds.MS.gene87955.t1;Parent=MS.gene87955.t1 |
| Gene Sequence |
| Protein sequence |
