AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89512

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89512.t1 MTR_5g062320 96.538 780 26 1 1 779 1 780 0.0 1557
MS.gene89512.t1 MTR_5g062370 94.118 782 43 1 1 779 1 782 0.0 1504
MS.gene89512.t1 MTR_5g062430 91.176 782 66 1 1 779 1 782 0.0 1458
MS.gene89512.t1 MTR_5g062650 84.076 785 119 3 1 779 1 785 0.0 1347
MS.gene89512.t1 MTR_3g074060 69.728 773 227 3 8 779 10 776 0.0 1165
MS.gene89512.t1 MTR_5g062370 94.208 587 31 1 1 584 1 587 0.0 1149
MS.gene89512.t1 MTR_5g030860 48.375 800 371 12 1 779 4 782 0.0 771
MS.gene89512.t1 MTR_1g106860 49.275 759 352 12 27 769 18 759 0.0 740
MS.gene89512.t1 MTR_2g034720 46.675 782 384 14 1 777 1 754 0.0 722
MS.gene89512.t1 MTR_7g109390 47.012 753 372 12 33 777 28 761 0.0 720
MS.gene89512.t1 MTR_2g008240 48.016 756 364 12 33 779 40 775 0.0 720
MS.gene89512.t1 MTR_1g087240 46.144 778 389 10 5 777 3 755 0.0 719
MS.gene89512.t1 MTR_4g094285 45.791 784 395 13 5 779 12 774 0.0 706
MS.gene89512.t1 MTR_6g028090 27.886 667 354 29 35 635 16 621 1.38e-41 161
MS.gene89512.t1 MTR_6g028120 28.006 657 346 30 45 635 7 602 3.43e-41 160
MS.gene89512.t1 MTR_3g079750 27.164 670 363 29 37 641 18 627 8.96e-40 156
MS.gene89512.t1 MTR_3g462820 27.045 599 353 22 47 592 22 589 1.12e-39 155
MS.gene89512.t1 MTR_2g030000 27.778 630 330 26 54 610 37 614 1.78e-39 155
MS.gene89512.t1 MTR_6g028100 27.202 647 346 28 54 635 35 621 4.24e-39 154
MS.gene89512.t1 MTR_6g028110 26.488 672 369 28 33 639 15 626 1.94e-38 152
MS.gene89512.t1 MTR_6g028110 26.488 672 369 28 33 639 15 626 3.68e-38 152
MS.gene89512.t1 MTR_7g086030 27.395 668 332 30 47 635 4 597 8.10e-37 147
MS.gene89512.t1 MTR_7g086030 27.395 668 332 30 47 635 29 622 8.32e-37 147
MS.gene89512.t1 MTR_5g069800 25.753 598 359 21 49 592 7 573 9.52e-36 144
MS.gene89512.t1 MTR_5g069740 25.680 588 350 21 54 592 12 561 2.82e-32 133
MS.gene89512.t1 MTR_7g086010 28.997 369 209 18 83 433 119 452 1.37e-22 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89512.t1 AT1G78060 63.214 753 266 7 31 779 22 767 0.0 1006
MS.gene89512.t1 AT5G10560 50.065 771 357 9 31 779 28 792 0.0 784
MS.gene89512.t1 AT3G19620 50.469 747 345 14 33 769 27 758 0.0 749
MS.gene89512.t1 AT5G09730 47.692 780 389 12 4 779 9 773 0.0 726
MS.gene89512.t1 AT5G64570 47.933 774 385 12 12 779 23 784 0.0 724
MS.gene89512.t1 AT1G02640 46.134 789 380 13 1 777 3 758 0.0 716
MS.gene89512.t1 AT5G49360 46.931 782 380 17 6 777 14 770 0.0 697
MS.gene89512.t1 AT5G64570 51.384 578 271 8 12 587 23 592 0.0 601
MS.gene89512.t1 AT5G64570 48.119 638 314 11 147 779 1 626 0.0 595
MS.gene89512.t1 AT5G09700 44.581 489 258 7 297 779 45 526 7.66e-133 405
MS.gene89512.t1 AT3G47040 26.194 649 371 26 47 638 10 607 2.04e-40 158
MS.gene89512.t1 AT3G47000 25.875 657 357 27 47 635 10 604 1.07e-38 153
MS.gene89512.t1 AT3G47040 25.337 667 379 28 47 638 10 632 9.49e-38 150
MS.gene89512.t1 AT5G04885 26.164 623 358 25 53 614 36 617 1.49e-37 150
MS.gene89512.t1 AT5G04885 26.164 623 358 25 53 614 36 617 1.49e-37 150
MS.gene89512.t1 AT5G04885 26.164 623 358 25 53 614 53 634 1.87e-37 150
MS.gene89512.t1 AT3G47010 26.409 621 365 26 47 610 11 596 3.12e-37 148
MS.gene89512.t1 AT3G47050 26.187 611 354 24 43 594 6 578 1.18e-36 147
MS.gene89512.t1 AT3G47010 26.164 623 363 28 47 610 11 595 1.65e-35 143
MS.gene89512.t1 AT5G20950 28.777 417 220 17 57 421 36 427 5.58e-32 132
MS.gene89512.t1 AT5G20950 28.777 417 220 17 57 421 36 427 5.58e-32 132
MS.gene89512.t1 AT5G20950 28.777 417 220 17 57 421 114 505 1.01e-31 132
MS.gene89512.t1 AT3G62710 26.861 618 336 29 59 634 105 648 3.12e-31 130
MS.gene89512.t1 AT3G47000 28.810 420 215 16 47 412 10 399 9.92e-31 126
MS.gene89512.t1 AT5G20940 28.132 423 240 16 57 433 42 446 1.89e-30 128
MS.gene89512.t1 AT3G47040 28.851 409 229 15 47 412 10 399 4.21e-30 124
MS.gene89512.t1 AT3G47040 24.336 678 380 30 47 638 10 640 1.02e-28 122
MS.gene89512.t1 AT3G47010 27.189 434 251 17 47 433 11 426 3.50e-27 116
MS.gene89512.t1 AT3G47000 25.268 467 285 20 191 635 3 427 2.35e-24 107
MS.gene89512.t1 AT3G47010 25.850 441 276 21 193 610 5 417 4.88e-24 106
MS.gene89512.t1 AT3G47050 26.064 376 218 13 43 374 6 365 1.80e-22 100

Find 189 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTATTGATGATTTAT+TGG 0.145046 5.4:+48811161 None:intergenic
CACCAAACATAAACATATTT+AGG 0.152169 5.4:-48813806 MS.gene89512:CDS
AATAAGTGATTATGTTATTT+TGG 0.156153 5.4:-48810989 MS.gene89512:CDS
TTCTAAGAAGCCTGTTATTT+TGG 0.174390 5.4:-48810866 MS.gene89512:CDS
CTGCCTATGATTTGGAAAAT+TGG 0.179123 5.4:-48813623 MS.gene89512:CDS
GCTAAGAATAATGACAAAAT+TGG 0.212120 5.4:-48810808 MS.gene89512:CDS
TTTCCATTTCTACCTTTCTT+TGG 0.223144 5.4:+48809479 None:intergenic
TTTGAAGGTGGGAAACTAAT+TGG 0.240728 5.4:-48813684 MS.gene89512:CDS
TCAGGTTACTTTACAAGATT+TGG 0.243170 5.4:-48813180 MS.gene89512:intron
TTGATGATTTATTGGCATTA+GGG 0.250324 5.4:+48811169 None:intergenic
AAGCTCAAGGGATGACGTTT+TGG 0.256760 5.4:-48813830 MS.gene89512:CDS
AAACAAGTATCCATATTAAA+AGG 0.276787 5.4:-48811111 MS.gene89512:CDS
ACACTTTACTGCCTATGATT+TGG 0.277559 5.4:-48813631 MS.gene89512:CDS
TCTTGTCCTCTTCCCCATCT+TGG 0.278328 5.4:+48813780 None:intergenic
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5.4:-48811192 MS.gene89512:CDS
ACAAAATTGGAGGCATCATT+TGG 0.281644 5.4:-48810795 MS.gene89512:CDS
ACTGATTCGGTACCAAAGTT+TGG 0.290827 5.4:+48814413 None:intergenic
ATTGATGATTTATTGGCATT+AGG 0.294469 5.4:+48811168 None:intergenic
TCTTTAGAGCATACTTGATT+TGG 0.301730 5.4:+48811297 None:intergenic
TGTGCTTACAATCGTGTTAA+TGG 0.302252 5.4:-48813095 MS.gene89512:CDS
AATTCTGCCATATTGAAGTT+TGG 0.332874 5.4:+48811323 None:intergenic
GGAGGTGGAAAGGGTGAAGT+TGG 0.339877 5.4:-48809413 MS.gene89512:CDS
AAACTTCAATATGGCAGAAT+TGG 0.347201 5.4:-48811321 MS.gene89512:CDS
CACAAAATTACCAAAATAAC+AGG 0.354358 5.4:+48810856 None:intergenic
CTGATTCGGTACCAAAGTTT+GGG 0.355066 5.4:+48814414 None:intergenic
TACAAACTTGGTTCAGAGTT+AGG 0.355134 5.4:-48809599 MS.gene89512:CDS
CCTTTGGTAAATTCAAAGTA+TGG 0.359897 5.4:-48813741 MS.gene89512:CDS
ACATTGGGAATTACAAATAC+TGG 0.364595 5.4:-48809542 MS.gene89512:CDS
CGGTGTTTCTTATGTTGGTA+AGG 0.366894 5.4:-48814511 MS.gene89512:CDS
CATGTCCATTTCTGTAACAT+TGG 0.372834 5.4:-48809558 MS.gene89512:CDS
GGCACGGTCGATTTGAGATA+TGG 0.377068 5.4:+48811401 None:intergenic
AAGTAATGGTGATGGAAAAT+TGG 0.378794 5.4:+48814796 None:intergenic
ATCATTTGGGCTGGTTATCC+TGG 0.383440 5.4:-48810781 MS.gene89512:CDS
GCTGGTTATCCTGGTGAAAC+TGG 0.384326 5.4:-48810772 MS.gene89512:CDS
CTTCAAGGAGATTCCTTTGA+AGG 0.385860 5.4:-48813699 MS.gene89512:CDS
GGTCCAAAGGTCTACGAATT+CGG 0.387773 5.4:-48809737 MS.gene89512:CDS
TTTGACGGAAATGAAGTTGT+AGG 0.388452 5.4:+48809688 None:intergenic
ACAAATACTGGAAGCATGGC+TGG 0.392102 5.4:-48809530 MS.gene89512:CDS
AATTCCCAATGTTACAGAAA+TGG 0.398418 5.4:+48809553 None:intergenic
ACCAAACATAAACATATTTA+GGG 0.398770 5.4:-48813805 MS.gene89512:CDS
AGATTGTAATCTGCACAGTT+TGG 0.398988 5.4:+48813068 None:intergenic
AATCCAACCAAACTTCAATA+TGG 0.399490 5.4:-48811330 MS.gene89512:CDS
TGGTGGAAGGGCTCTGGCTC+AGG 0.399913 5.4:-48810752 MS.gene89512:CDS
TCCCTAAATATGTTTATGTT+TGG 0.400093 5.4:+48813804 None:intergenic
AGGAATAATTTGAGTAGCTT+AGG 0.401616 5.4:+48809708 None:intergenic
CAAACCTAGTCTTATTCTAA+TGG 0.402033 5.4:+48811362 None:intergenic
GAAACAATCCGTTACAAACT+TGG 0.405974 5.4:-48809611 MS.gene89512:CDS
GCTCTGGCTCAGGTTGTGTT+TGG 0.406314 5.4:-48810742 MS.gene89512:CDS
TAGCCGAATTCGTAGACCTT+TGG 0.407677 5.4:+48809734 None:intergenic
ATAAGACTAGGTTTGTTTGA+TGG 0.411429 5.4:-48811354 MS.gene89512:CDS
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5.4:+48811198 None:intergenic
AACCCTACCAACTGTTTCAC+TGG 0.418928 5.4:+48809455 None:intergenic
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5.4:-48809324 MS.gene89512:CDS
ATAAGTTTCTGTTGCTTACC+AGG 0.420753 5.4:+48810907 None:intergenic
TGAAACTGGTGGAAGGGCTC+TGG 0.429489 5.4:-48810758 MS.gene89512:CDS
TAAGACTAGGTTTGTTTGAT+GGG 0.430129 5.4:-48811353 MS.gene89512:CDS
AACAGCTGGGGAAGATCCTT+TGG 0.430162 5.4:-48813757 MS.gene89512:CDS
CAGCTTCAAGAGCAAGGTCT+AGG 0.436293 5.4:+48811271 None:intergenic
AAGCCAAAGAAAGGTAGAAA+TGG 0.439382 5.4:-48809482 MS.gene89512:CDS
CAAAATTGGAGGCATCATTT+GGG 0.439628 5.4:-48810794 MS.gene89512:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5.4:+48809809 None:intergenic
TTTGAGAGTGTGACGGTGGA+AGG 0.447503 5.4:-48809434 MS.gene89512:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5.4:-48809330 MS.gene89512:CDS
GAGGTGGAAAGGGTGAAGTT+GGG 0.452463 5.4:-48809412 MS.gene89512:CDS
GTGTTTGGTGACTATAACCC+TGG 0.452505 5.4:-48810727 MS.gene89512:intron
AGCCAGACACATTATCGTTC+TGG 0.456155 5.4:-48811072 MS.gene89512:CDS
ATGTCCATTTCTGTAACATT+GGG 0.459363 5.4:-48809557 MS.gene89512:CDS
AATTAGTTTCCCACCTTCAA+AGG 0.461085 5.4:+48813686 None:intergenic
AGTTACTGACCTTACTGATT+CGG 0.462510 5.4:+48814400 None:intergenic
GCACGGTCGATTTGAGATAT+GGG 0.464880 5.4:+48811402 None:intergenic
TTAGCAAAAGTAATATCAAC+AGG 0.467973 5.4:+48810826 None:intergenic
ACGGTGGAAGGAGGTGGAAA+GGG 0.469710 5.4:-48809422 MS.gene89512:CDS
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5.4:-48809318 MS.gene89512:CDS
TTGCACGGTGTTTCTTATGT+TGG 0.479426 5.4:-48814516 MS.gene89512:CDS
CTGCCATATTGAAGTTTGGT+TGG 0.480427 5.4:+48811327 None:intergenic
GAGCCGTGACACAATGTCTT+TGG 0.481669 5.4:+48814629 None:intergenic
AATATGGATACTTGTTTACA+AGG 0.482332 5.4:+48811117 None:intergenic
TCTTATGTGAGAGGTCTTCA+AGG 0.482991 5.4:-48813714 MS.gene89512:CDS
GTGTTTCCGTCTCTTGACTT+TGG 0.484702 5.4:+48810953 None:intergenic
CATATTTAGGGATCCAAGAT+GGG 0.485529 5.4:-48813793 MS.gene89512:CDS
ACATATTTAGGGATCCAAGA+TGG 0.488212 5.4:-48813794 MS.gene89512:CDS
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5.4:-48809323 MS.gene89512:CDS
GTTGTATGAATGAAGGTGAT+TGG 0.496646 5.4:-48813885 MS.gene89512:intron
ATCCAGAACGATAATGTGTC+TGG 0.501407 5.4:+48811070 None:intergenic
GGTGTTTCTTATGTTGGTAA+GGG 0.501707 5.4:-48814510 MS.gene89512:CDS
GGTAACGTTGAGATTGCAAA+AGG 0.503267 5.4:+48814665 None:intergenic
AGGTACATTAGTCGGTGAAT+CGG 0.504246 5.4:+48814731 None:intergenic
CTGTTTGTGAAGCCAAAGAA+AGG 0.504938 5.4:-48809491 MS.gene89512:CDS
GTCTTTGGCTCTTTGAGTGA+TGG 0.506861 5.4:+48814644 None:intergenic
CAAGGAGATTCCTTTGAAGG+TGG 0.506994 5.4:-48813696 MS.gene89512:CDS
GACGGTGGAAGGAGGTGGAA+AGG 0.507657 5.4:-48809423 MS.gene89512:CDS
GGTAAGGGGATAAGATTGAA+TGG 0.507764 5.4:-48814495 MS.gene89512:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5.4:-48809791 MS.gene89512:CDS
TTGGAGATGTCACAGGAGTA+AGG 0.511401 5.4:+48814708 None:intergenic
GTAGAAACGGTAGGTTCTAC+CGG 0.511605 5.4:+48809763 None:intergenic
CGGTATACCGAGTCGAGGAA+TGG 0.513844 5.4:+48814563 None:intergenic
ACATCAGCTACAACATCCTC+TGG 0.517153 5.4:+48812489 None:intergenic
CTACCGGGATAGCCTGATGA+TGG 0.517596 5.4:+48809779 None:intergenic
CTTCCAAGAGTAAATACCCT+TGG 0.522743 5.4:-48811201 MS.gene89512:CDS
TGGTTGACTGGTTGATGTGA+AGG 0.523221 5.4:+48809657 None:intergenic
TTCTTGCAGCTTCAAGAGCA+AGG 0.526483 5.4:+48811265 None:intergenic
GGTTACTTTACAAGATTTGG+CGG 0.526554 5.4:-48813177 MS.gene89512:CDS
TATCGTTCTGGATGTACTGA+TGG 0.530389 5.4:-48811060 MS.gene89512:CDS
AAGAATAATGACAAAATTGG+AGG 0.530513 5.4:-48810805 MS.gene89512:CDS
GGAAGAGGACAAGAAACAGC+TGG 0.534154 5.4:-48813771 MS.gene89512:CDS
GCTAGAGGAGTGTACAATGC+TGG 0.534160 5.4:-48813855 MS.gene89512:CDS
ATACCGAGTCGAGGAATGGC+AGG 0.534851 5.4:+48814567 None:intergenic
ATTGGAGGCATCATTTGGGC+TGG 0.536363 5.4:-48810790 MS.gene89512:CDS
AAGGTCTACGAATTCGGCTA+TGG 0.539382 5.4:-48809731 MS.gene89512:CDS
CCTTTGGACCTGTGTAGAAA+CGG 0.540578 5.4:+48809750 None:intergenic
AATGGTAAATAGATTGTGTA+GGG 0.541798 5.4:+48811380 None:intergenic
ATCCAGTGAAACAGTTGGTA+GGG 0.542668 5.4:-48809457 MS.gene89512:CDS
GATCCATCATCAGGCTATCC+CGG 0.542828 5.4:-48809782 MS.gene89512:CDS
GGCTTCACAAACAGCAACAC+AGG 0.545539 5.4:+48809500 None:intergenic
CTATGATTTGGAAAATTGGA+AGG 0.547121 5.4:-48813619 MS.gene89512:CDS
GGTGTCAAGGTGGTTGAAGA+AGG 0.548262 5.4:-48809344 MS.gene89512:CDS
TACAATGCTGGACAAGCTCA+AGG 0.548478 5.4:-48813843 MS.gene89512:CDS
AAGGAGATTCCTTTGAAGGT+GGG 0.551664 5.4:-48813695 MS.gene89512:CDS
CAATGTTACAGAAATGGACA+TGG 0.553553 5.4:+48809559 None:intergenic
AGGGATCCAAGATGGGGAAG+AGG 0.555974 5.4:-48813786 MS.gene89512:CDS
AGAGTTCATTTAGAGTTACC+TGG 0.556126 5.4:-48810925 MS.gene89512:CDS
GCCCTTCCACCAGTTTCACC+AGG 0.557917 5.4:+48810763 None:intergenic
AATCCAGTGAAACAGTTGGT+AGG 0.561271 5.4:-48809458 MS.gene89512:CDS
GTGTTTCTTATGTTGGTAAG+GGG 0.562805 5.4:-48814509 MS.gene89512:CDS
TCGGTATACCGAGTTATCAA+TGG 0.563582 5.4:-48814551 MS.gene89512:CDS
TCTTGGAAGTGAGAGAATTG+AGG 0.564887 5.4:+48811215 None:intergenic
TCATTCCACCATTGATAACT+CGG 0.565942 5.4:+48814543 None:intergenic
CCATACTTTGAATTTACCAA+AGG 0.567024 5.4:+48813741 None:intergenic
TAATGGTAAATAGATTGTGT+AGG 0.569087 5.4:+48811379 None:intergenic
GTGAATCGGCATGAACGAGT+TGG 0.570073 5.4:+48814745 None:intergenic
ATCCTGGTGAAACTGGTGGA+AGG 0.570539 5.4:-48810765 MS.gene89512:CDS
GAAGGTGGGAAACTAATTGG+AGG 0.571323 5.4:-48813681 MS.gene89512:CDS
GCTCTTGAAGCTGCAAGAAG+TGG 0.571675 5.4:-48811261 MS.gene89512:CDS
CAAATACTGGAAGCATGGCT+GGG 0.573487 5.4:-48809529 MS.gene89512:CDS
ACTTTGGTACCGAATCAGTA+AGG 0.574437 5.4:-48814409 MS.gene89512:intron
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5.4:-48809431 MS.gene89512:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5.4:-48809428 MS.gene89512:CDS
AGAACGATAATGTGTCTGGC+TGG 0.580712 5.4:+48811074 None:intergenic
AGCAAATGAGAGTGGTGTCA+AGG 0.581128 5.4:-48809357 MS.gene89512:CDS
CATTGTGTCACGGCTCACAT+TGG 0.582035 5.4:-48814622 MS.gene89512:CDS
GTATCGAATGAGTGGTTGAC+TGG 0.582453 5.4:+48809645 None:intergenic
AATTACAAATACTGGAAGCA+TGG 0.582605 5.4:-48809534 MS.gene89512:CDS
GTAGCTGATGTACTTCGAGC+TGG 0.583158 5.4:-48812477 MS.gene89512:intron
TCCTGGTGAAACTGGTGGAA+GGG 0.585464 5.4:-48810764 MS.gene89512:CDS
TATGGTGTTTCTTATGTGAG+AGG 0.591390 5.4:-48813723 MS.gene89512:CDS
GAGTAAGGAGGTACATTAGT+CGG 0.591459 5.4:+48814723 None:intergenic
ACTCTGAACCAAGTTTGTAA+CGG 0.594819 5.4:+48809603 None:intergenic
CATTAGGGCCTATAACTCCA+AGG 0.594911 5.4:+48811184 None:intergenic
GCAGCCGTAAGAATGATTTG+AGG 0.597230 5.4:+48814447 None:intergenic
GAAGAGGACAAGAAACAGCT+GGG 0.598422 5.4:-48813770 MS.gene89512:CDS
CCGTTTCTACACAGGTCCAA+AGG 0.609130 5.4:-48809750 MS.gene89512:CDS
TAACGTTGAGATTGCAAAAG+GGG 0.610311 5.4:+48814667 None:intergenic
TCAGGGATGGATGTAGAGTG+TGG 0.611464 5.4:-48811474 MS.gene89512:intron
AGAACCTACCGTTTCTACAC+AGG 0.612051 5.4:-48809758 MS.gene89512:CDS
GGTTATCCTGGTGAAACTGG+TGG 0.612813 5.4:-48810769 MS.gene89512:CDS
ACGTGGGTTGGAGATGTCAC+AGG 0.612949 5.4:+48814701 None:intergenic
GTCAAGGTGGTTGAAGAAGG+TGG 0.614362 5.4:-48809341 MS.gene89512:CDS
TGGAAATCCAGTGAAACAGT+TGG 0.620701 5.4:-48809462 MS.gene89512:CDS
GTATACCGAGTTATCAATGG+TGG 0.620903 5.4:-48814548 MS.gene89512:CDS
TTCTATGCAACTATGAAACG+AGG 0.622993 5.4:+48813142 None:intergenic
TTAAATCAGGTATATTGCGT+CGG 0.624270 5.4:-48812562 MS.gene89512:intron
GTAACGTTGAGATTGCAAAA+GGG 0.625139 5.4:+48814666 None:intergenic
GCTCCTGCCATTCCTCGACT+CGG 0.625159 5.4:-48814570 MS.gene89512:CDS
TGGACCTGTGTAGAAACGGT+AGG 0.625209 5.4:+48809754 None:intergenic
TTTACCATTAGAATAAGACT+AGG 0.630221 5.4:-48811366 MS.gene89512:CDS
TAAATAGATTGTGTAGGGCA+CGG 0.632594 5.4:+48811385 None:intergenic
CGATACATATATGAGAAACA+AGG 0.634724 5.4:-48812525 MS.gene89512:CDS
GGTAGGGTTTGAGAGTGTGA+CGG 0.635292 5.4:-48809441 MS.gene89512:CDS
AGGGTTTGAGAGTGTGACGG+TGG 0.638866 5.4:-48809438 MS.gene89512:CDS
ATTGGACCAAAGTCAAGAGA+CGG 0.639353 5.4:-48810959 MS.gene89512:CDS
ATAGAACAAGGACGATCTAG+TGG 0.641432 5.4:-48813125 MS.gene89512:CDS
TTTCATAGTTGCATAGAACA+AGG 0.642706 5.4:-48813137 MS.gene89512:CDS
TAGAAACGGTAGGTTCTACC+GGG 0.648311 5.4:+48809764 None:intergenic
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5.4:-48809365 MS.gene89512:CDS
GTGATTGGAACTGAGGCTAG+AGG 0.649624 5.4:-48813870 MS.gene89512:CDS
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5.4:+48811185 None:intergenic
GAGCCAAAGACATTGTGTCA+CGG 0.665561 5.4:-48814632 MS.gene89512:CDS
AATGAAGGTGATTGGAACTG+AGG 0.666042 5.4:-48813877 MS.gene89512:intron
TATGATTTGGAAAATTGGAA+GGG 0.673969 5.4:-48813618 MS.gene89512:CDS
ACAATGCTGGACAAGCTCAA+GGG 0.675868 5.4:-48813842 MS.gene89512:CDS
ATATTTAGGGATCCAAGATG+GGG 0.682736 5.4:-48813792 MS.gene89512:CDS
TCTATGCAACTATGAAACGA+GGG 0.684013 5.4:+48813143 None:intergenic
GAGGGAGACTACCAATGACA+TGG 0.689428 5.4:-48809856 MS.gene89512:CDS
AAGAGGACAAGAAACAGCTG+GGG 0.694770 5.4:-48813769 MS.gene89512:CDS
TGGTGGAATGAAGCTTTGCA+CGG 0.702092 5.4:-48814531 MS.gene89512:CDS
ATGGATACTTGTTTACAAGG+AGG 0.708927 5.4:+48811120 None:intergenic
TAACTCGGTATACCGAGTCG+AGG 0.711678 5.4:+48814558 None:intergenic
GAGATGTCACAGGAGTAAGG+AGG 0.715685 5.4:+48814711 None:intergenic
AAATGAGAGTGGTGTCAAGG+TGG 0.736902 5.4:-48809354 MS.gene89512:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATTTAAAAACATATAAA+AGG - chr5.4:48811237-48811256 MS.gene89512:CDS 10.0%
!! ATAGAATTATTATGTGTTTA+CGG - chr5.4:48811683-48811702 MS.gene89512:intron 15.0%
!! ATATACTAGAAAAAGTTATT+TGG + chr5.4:48814152-48814171 None:intergenic 15.0%
!! TATACTAGAAAAAGTTATTT+GGG + chr5.4:48814151-48814170 None:intergenic 15.0%
!! TATTGTTTAATAGAAGATAT+TGG + chr5.4:48811315-48811334 None:intergenic 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5.4:48813101-48813120 MS.gene89512:CDS 15.0%
!!! TTCATCATAATTTTTAGTAT+AGG - chr5.4:48812048-48812067 MS.gene89512:intron 15.0%
!!! TTTCTTAATTTTACTCAATT+TGG - chr5.4:48812282-48812301 MS.gene89512:intron 15.0%
!! AAACAAAATACAAAAGAAGA+AGG + chr5.4:48812201-48812220 None:intergenic 20.0%
!! AAACAAGTATCCATATTAAA+AGG - chr5.4:48812979-48812998 MS.gene89512:intron 20.0%
!! AAATGAGAGAATATTTAGTT+AGG - chr5.4:48813693-48813712 MS.gene89512:CDS 20.0%
!! ACAAATAAACATACATAATG+TGG - chr5.4:48813412-48813431 MS.gene89512:intron 20.0%
!! ACATAATTCAGTGTAATTAT+AGG + chr5.4:48809799-48809818 None:intergenic 20.0%
!! ACCAAACATAAACATATTTA+GGG - chr5.4:48810285-48810304 MS.gene89512:intron 20.0%
!! ATACTAGAAAAAGTTATTTG+GGG + chr5.4:48814150-48814169 None:intergenic 20.0%
!! ATGGATTTGGATTATTAAAA+TGG + chr5.4:48810881-48810900 None:intergenic 20.0%
!! ATTACAATACAAACAAAACT+CGG + chr5.4:48810160-48810179 None:intergenic 20.0%
!! CTTCAAAAAAATCCAAATAT+GGG + chr5.4:48809917-48809936 None:intergenic 20.0%
!! GTTCTTATAAATTACAAAAG+TGG - chr5.4:48811134-48811153 MS.gene89512:CDS 20.0%
!! TACATAATGTGGTAAAAAAA+TGG - chr5.4:48813423-48813442 MS.gene89512:intron 20.0%
!! TATGTATGTTTATTTGTTCA+TGG + chr5.4:48813409-48813428 None:intergenic 20.0%
!! TCTTCAAAAAAATCCAAATA+TGG + chr5.4:48809918-48809937 None:intergenic 20.0%
!! TGAAGTTTATACATGTTTAA+AGG + chr5.4:48813648-48813667 None:intergenic 20.0%
!! TTTGACATAAACTAAAACTA+AGG + chr5.4:48812347-48812366 None:intergenic 20.0%
!!! AAGAACTATTGATGATTTAT+TGG + chr5.4:48812932-48812951 None:intergenic 20.0%
!!! AGTAAGATAACGATATTTTA+AGG + chr5.4:48811793-48811812 None:intergenic 20.0%
!!! ATAATCAATGTTTTCAATTG+TGG + chr5.4:48814081-48814100 None:intergenic 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5.4:48813108-48813127 MS.gene89512:CDS 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5.4:48814262-48814281 None:intergenic 20.0%
!!! TATTTTATATTGGGAAACAA+GGG - chr5.4:48813738-48813757 MS.gene89512:CDS 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5.4:48813107-48813126 MS.gene89512:CDS 20.0%
!!! TTACAATCTTTTAACCAATA+CGG - chr5.4:48811036-48811055 MS.gene89512:CDS 20.0%
!!! TTATTTTATATTGGGAAACA+AGG - chr5.4:48813737-48813756 MS.gene89512:CDS 20.0%
!!! TTGATTAGTATGAATGATTT+TGG - chr5.4:48811502-48811521 MS.gene89512:intron 20.0%
!!! TTTCTCATTAGTATTTTTGT+CGG - chr5.4:48811840-48811859 MS.gene89512:intron 20.0%
! AAAAATGAAAGTAATGGTGA+TGG + chr5.4:48809305-48809324 None:intergenic 25.0%
! AAAACTAAAAGACAAATTCG+AGG + chr5.4:48810669-48810688 None:intergenic 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5.4:48813285-48813304 MS.gene89512:intron 25.0%
! AAGTGTGATTATAAAGCTTA+AGG + chr5.4:48812318-48812337 None:intergenic 25.0%
! AATATGGATACTTGTTTACA+AGG + chr5.4:48812976-48812995 None:intergenic 25.0%
! AATGGTAAATAGATTGTGTA+GGG + chr5.4:48812713-48812732 None:intergenic 25.0%
! AGAGAAAAGAAAACTTACTT+TGG + chr5.4:48810521-48810540 None:intergenic 25.0%
! AGATTCCAAGAAAATAGTTA+AGG - chr5.4:48813898-48813917 MS.gene89512:intron 25.0%
! AGCATAACAGTATATAGAAA+AGG + chr5.4:48810817-48810836 None:intergenic 25.0%
! AGGAAAAAATGGAATTTCAA+TGG - chr5.4:48811061-48811080 MS.gene89512:CDS 25.0%
! AGTAACCTGAATTATTAGAA+TGG + chr5.4:48810900-48810919 None:intergenic 25.0%
! ATATCAAATTGCTACATACA+TGG + chr5.4:48814021-48814040 None:intergenic 25.0%
! ATTATGTGTTGTATGAATGA+AGG - chr5.4:48810198-48810217 MS.gene89512:intron 25.0%
! ATTTAGTTGTGCTTACTAAA+TGG + chr5.4:48813799-48813818 None:intergenic 25.0%
! CAAAGATGTAACATAATTAG+AGG - chr5.4:48812078-48812097 MS.gene89512:intron 25.0%
! CAAATCATTTAACCCATATT+TGG - chr5.4:48809902-48809921 MS.gene89512:intron 25.0%
! CAAATCCATTCTAATAATTC+AGG - chr5.4:48810892-48810911 MS.gene89512:CDS 25.0%
! CACAAAATTACCAAAATAAC+AGG + chr5.4:48813237-48813256 None:intergenic 25.0%
! CACCAAACATAAACATATTT+AGG - chr5.4:48810284-48810303 MS.gene89512:intron 25.0%
! CTAAACATAGACTAATTCTA+AGG + chr5.4:48812424-48812443 None:intergenic 25.0%
! GAAGAGAAAAATGAAAGTAA+TGG + chr5.4:48809311-48809330 None:intergenic 25.0%
! GCTAAGAATAATGACAAAAT+TGG - chr5.4:48813282-48813301 MS.gene89512:intron 25.0%
! GGAAAAAATGGAATTTCAAT+GGG - chr5.4:48811062-48811081 MS.gene89512:CDS 25.0%
! GGGATATATACAATGTATTT+CGG + chr5.4:48814129-48814148 None:intergenic 25.0%
! GTTTAATAGAAGATATTGGT+GGG + chr5.4:48811311-48811330 None:intergenic 25.0%
! TAATGGTAAATAGATTGTGT+AGG + chr5.4:48812714-48812733 None:intergenic 25.0%
! TACTAGAAAAAGTTATTTGG+GGG + chr5.4:48814149-48814168 None:intergenic 25.0%
! TAGAAAATAGTGTTTGTTTG+CGG + chr5.4:48813996-48814015 None:intergenic 25.0%
! TATACATGTTTAAAGGATCT+TGG + chr5.4:48813641-48813660 None:intergenic 25.0%
! TCCCTAAATATGTTTATGTT+TGG + chr5.4:48810289-48810308 None:intergenic 25.0%
! TCGTTATCTTACTTTATCAA+TGG - chr5.4:48811800-48811819 MS.gene89512:intron 25.0%
! TCTGATTATGACATAAACAA+AGG + chr5.4:48811654-48811673 None:intergenic 25.0%
! TGGAAAACATTGTTTCATAA+AGG + chr5.4:48811341-48811360 None:intergenic 25.0%
! TGTTTAATAGAAGATATTGG+TGG + chr5.4:48811312-48811331 None:intergenic 25.0%
! TTACAATACAAACAAAACTC+GGG + chr5.4:48810159-48810178 None:intergenic 25.0%
! TTAGCAAAAGTAATATCAAC+AGG + chr5.4:48813267-48813286 None:intergenic 25.0%
! TTATATTAAGTCACATGGTT+TGG - chr5.4:48811877-48811896 MS.gene89512:intron 25.0%
! TTCAAATGAATTCTACTACT+GGG - chr5.4:48810081-48810100 MS.gene89512:intron 25.0%
! TTTACCATTAGAATAAGACT+AGG - chr5.4:48812724-48812743 MS.gene89512:intron 25.0%
! TTTAGTTGTGCTTACTAAAT+GGG + chr5.4:48813798-48813817 None:intergenic 25.0%
! TTTCAAATGAATTCTACTAC+TGG - chr5.4:48810080-48810099 MS.gene89512:intron 25.0%
! TTTGCTTATATTAAGTCACA+TGG - chr5.4:48811872-48811891 MS.gene89512:intron 25.0%
!! AATGTTTTCCACTCTATTAA+AGG - chr5.4:48811350-48811369 MS.gene89512:CDS 25.0%
!! AGTAAGTTTTCTTTTCTCTA+TGG - chr5.4:48810522-48810541 MS.gene89512:intron 25.0%
!! AGTGTAAAAGCCTTTTAATA+TGG + chr5.4:48812992-48813011 None:intergenic 25.0%
!! AGTTGAGAAATAGTAGTTTT+AGG + chr5.4:48814178-48814197 None:intergenic 25.0%
!! ATGTGGTAAAAAAATGGATT+TGG - chr5.4:48813429-48813448 MS.gene89512:intron 25.0%
!! ATTGATGATTTATTGGCATT+AGG + chr5.4:48812925-48812944 None:intergenic 25.0%
!! CTGAATTATTAGAATGGATT+TGG + chr5.4:48810894-48810913 None:intergenic 25.0%
!! CTTAGAATTAGTCTATGTTT+AGG - chr5.4:48812422-48812441 MS.gene89512:intron 25.0%
!! CTTGTGTATGTTTGAAATTA+TGG + chr5.4:48812540-48812559 None:intergenic 25.0%
!! GTTCTTTTAGCAAACTATTT+TGG - chr5.4:48812946-48812965 MS.gene89512:intron 25.0%
!! TATAACTTGTACCGAAATAA+CGG + chr5.4:48812465-48812484 None:intergenic 25.0%
!! TATGATTTGGAAAATTGGAA+GGG - chr5.4:48810472-48810491 MS.gene89512:intron 25.0%
!! TTAACTATTTTCTTGGAATC+TGG + chr5.4:48813899-48813918 None:intergenic 25.0%
!! TTGATGATTTATTGGCATTA+GGG + chr5.4:48812924-48812943 None:intergenic 25.0%
!! TTTTCCTCAAATCATTCTTA+CGG - chr5.4:48809639-48809658 MS.gene89512:CDS 25.0%
!!! ATTATAATTTTGATGAACCG+TGG - chr5.4:48812564-48812583 MS.gene89512:intron 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5.4:48814263-48814282 None:intergenic 25.0%
!!! GTTATTTTGGTAATTTTGTG+TGG - chr5.4:48813237-48813256 MS.gene89512:intron 25.0%
AAAACATATAAAAGGCAACC+CGG - chr5.4:48811245-48811264 MS.gene89512:CDS 30.0%
AAACTTCAATATGGCAGAAT+TGG - chr5.4:48812769-48812788 MS.gene89512:intron 30.0%
AACTGTTTCACCAACTAAAT+AGG + chr5.4:48811385-48811404 None:intergenic 30.0%
AAGTCATGATTCAATTTCCA+AGG + chr5.4:48810747-48810766 None:intergenic 30.0%
AATCCAACCAAACTTCAATA+TGG - chr5.4:48812760-48812779 MS.gene89512:intron 30.0%
AATTACAAATACTGGAAGCA+TGG - chr5.4:48814556-48814575 MS.gene89512:CDS 30.0%
AATTCCCAATGTTACAGAAA+TGG + chr5.4:48814540-48814559 None:intergenic 30.0%
AATTCTGCCATATTGAAGTT+TGG + chr5.4:48812770-48812789 None:intergenic 30.0%
ACATTGGGAATTACAAATAC+TGG - chr5.4:48814548-48814567 MS.gene89512:CDS 30.0%
ACGCAATATACCTGATTTAA+CGG + chr5.4:48811528-48811547 None:intergenic 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5.4:48814385-48814404 None:intergenic 30.0%
AGTATTCTTAAAATCGTGGT+TGG - chr5.4:48810593-48810612 MS.gene89512:intron 30.0%
ATATTCTATCATTGCAATGC+AGG - chr5.4:48814212-48814231 MS.gene89512:intron 30.0%
ATGTCCATTTCTGTAACATT+GGG - chr5.4:48814533-48814552 MS.gene89512:CDS 30.0%
ATGTTGTACTACCGTTATTT+CGG - chr5.4:48812451-48812470 MS.gene89512:intron 30.0%
ATTTGGTTGAATTGACTAGA+TGG - chr5.4:48813862-48813881 MS.gene89512:CDS 30.0%
CACAACTAAATCTCAATTAC+TGG - chr5.4:48813808-48813827 MS.gene89512:CDS 30.0%
CATGTTTGACAAAATGTTGT+TGG - chr5.4:48809722-48809741 MS.gene89512:CDS 30.0%
CCATACTTTGAATTTACCAA+AGG + chr5.4:48810352-48810371 None:intergenic 30.0%
CCTTTGGTAAATTCAAAGTA+TGG - chr5.4:48810349-48810368 MS.gene89512:intron 30.0%
CGATACATATATGAGAAACA+AGG - chr5.4:48811565-48811584 MS.gene89512:intron 30.0%
GTCTAGTATTCTTAAAATCG+TGG - chr5.4:48810589-48810608 MS.gene89512:intron 30.0%
GTTGAAACACTTCTTGAATT+AGG - chr5.4:48809744-48809763 MS.gene89512:CDS 30.0%
TAAATCTCAATTACTGGATG+CGG - chr5.4:48813814-48813833 MS.gene89512:CDS 30.0%
TACTTTATCAATGGTCTCAA+TGG - chr5.4:48811809-48811828 MS.gene89512:intron 30.0%
TTAAATCAGGTATATTGCGT+CGG - chr5.4:48811528-48811547 MS.gene89512:intron 30.0%
TTATAGAACTAGAGACAAAG+AGG + chr5.4:48812370-48812389 None:intergenic 30.0%
TTCTCAAATTATTAGCGTGT+CGG - chr5.4:48809823-48809842 MS.gene89512:CDS 30.0%
TTTCATAGTTGCATAGAACA+AGG - chr5.4:48810953-48810972 MS.gene89512:CDS 30.0%
TTTCCATTTCTACCTTTCTT+TGG + chr5.4:48814614-48814633 None:intergenic 30.0%
! ATAAGACTAGGTTTGTTTGA+TGG - chr5.4:48812736-48812755 MS.gene89512:intron 30.0%
! CTACAATTCTAGTATTGAGT+GGG - chr5.4:48810040-48810059 MS.gene89512:intron 30.0%
! CTATGATTTGGAAAATTGGA+AGG - chr5.4:48810471-48810490 MS.gene89512:intron 30.0%
! CTTCCAATTTTCCAAATCAT+AGG + chr5.4:48810473-48810492 None:intergenic 30.0%
! TAAGACTAGGTTTGTTTGAT+GGG - chr5.4:48812737-48812756 MS.gene89512:intron 30.0%
! TCAGGTTACTTTACAAGATT+TGG - chr5.4:48810910-48810929 MS.gene89512:CDS 30.0%
! TGCGTGATCAAAATTTTTCA+GGG - chr5.4:48812599-48812618 MS.gene89512:intron 30.0%
! TTGCGTGATCAAAATTTTTC+AGG - chr5.4:48812598-48812617 MS.gene89512:intron 30.0%
! TTTTAGTACTTACCCAATCT+CGG - chr5.4:48809976-48809995 MS.gene89512:intron 30.0%
!! AAGTAATGGTGATGGAAAAT+TGG + chr5.4:48809297-48809316 None:intergenic 30.0%
!! ATTTTGGTAATTTTGTGTGG+TGG - chr5.4:48813240-48813259 MS.gene89512:intron 30.0%
!! CAAACCTAGTCTTATTCTAA+TGG + chr5.4:48812731-48812750 None:intergenic 30.0%
!! TCTTTAGAGCATACTTGATT+TGG + chr5.4:48812796-48812815 None:intergenic 30.0%
!! TTCTAAGAAGCCTGTTATTT+TGG - chr5.4:48813224-48813243 MS.gene89512:intron 30.0%
!!! TATCACCAACTTTTTTCCAA+TGG + chr5.4:48811996-48812015 None:intergenic 30.0%
!!! TCACTTAGTTGTTTTAGTTC+TGG - chr5.4:48812155-48812174 MS.gene89512:intron 30.0%
!!! TGATCAAAATTTTTCAGGGA+TGG - chr5.4:48812603-48812622 MS.gene89512:intron 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5.4:48813113-48813132 MS.gene89512:CDS 30.0%
AAATGAATTCTACTACTGGG+CGG - chr5.4:48810084-48810103 MS.gene89512:intron 35.0%
AAGACAGAAGAAAACTAACC+AGG + chr5.4:48813384-48813403 None:intergenic 35.0%
AAGCCAAAGAAAGGTAGAAA+TGG - chr5.4:48814608-48814627 MS.gene89512:CDS 35.0%
AATGTAACGAAGCACAGATA+CGG + chr5.4:48809882-48809901 None:intergenic 35.0%
ACACTTTACTGCCTATGATT+TGG - chr5.4:48810459-48810478 MS.gene89512:intron 35.0%
ACATATTTAGGGATCCAAGA+TGG - chr5.4:48810296-48810315 MS.gene89512:intron 35.0%
ACCATAGAATTAATCACCCT+AGG + chr5.4:48810554-48810573 None:intergenic 35.0%
ACTCTGAACCAAGTTTGTAA+CGG + chr5.4:48814490-48814509 None:intergenic 35.0%
AGACAGAAGAAAACTAACCA+GGG + chr5.4:48813383-48813402 None:intergenic 35.0%
AGATTGTAATCTGCACAGTT+TGG + chr5.4:48811025-48811044 None:intergenic 35.0%
AGTCTCCATTGGAAAAAAGT+TGG - chr5.4:48811988-48812007 MS.gene89512:intron 35.0%
ATATTTAGGGATCCAAGATG+GGG - chr5.4:48810298-48810317 MS.gene89512:intron 35.0%
ATGGATACTTGTTTACAAGG+AGG + chr5.4:48812973-48812992 None:intergenic 35.0%
CAATGTTACAGAAATGGACA+TGG + chr5.4:48814534-48814553 None:intergenic 35.0%
CATATTTAGGGATCCAAGAT+GGG - chr5.4:48810297-48810316 MS.gene89512:intron 35.0%
CATGTCCATTTCTGTAACAT+TGG - chr5.4:48814532-48814551 MS.gene89512:CDS 35.0%
CCACTCAATACTAGAATTGT+AGG + chr5.4:48810042-48810061 None:intergenic 35.0%
GAAACAATCCGTTACAAACT+TGG - chr5.4:48814479-48814498 MS.gene89512:CDS 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5.4:48812898-48812917 MS.gene89512:intron 35.0%
GTAACGTTGAGATTGCAAAA+GGG + chr5.4:48809427-48809446 None:intergenic 35.0%
GTTGTATGAATGAAGGTGAT+TGG - chr5.4:48810205-48810224 MS.gene89512:intron 35.0%
TAAATAGATTGTGTAGGGCA+CGG + chr5.4:48812708-48812727 None:intergenic 35.0%
TAACGTTGAGATTGCAAAAG+GGG + chr5.4:48809426-48809445 None:intergenic 35.0%
TACAAACTTGGTTCAGAGTT+AGG - chr5.4:48814491-48814510 MS.gene89512:CDS 35.0%
TATGGTGTTTCTTATGTGAG+AGG - chr5.4:48810367-48810386 MS.gene89512:intron 35.0%
TCCTAGGGTGATTAATTCTA+TGG - chr5.4:48810550-48810569 MS.gene89512:intron 35.0%
TCTATGCAACTATGAAACGA+GGG + chr5.4:48810950-48810969 None:intergenic 35.0%
TCTCAAATTATTAGCGTGTC+GGG - chr5.4:48809824-48809843 MS.gene89512:CDS 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5.4:48814760-48814779 MS.gene89512:CDS 35.0%
TGTGCTTACAATCGTGTTAA+TGG - chr5.4:48810995-48811014 MS.gene89512:CDS 35.0%
TTATCAATGGTCTCAATGGA+AGG - chr5.4:48811813-48811832 MS.gene89512:intron 35.0%
TTATGTCGTTGTTGAATCCT+TGG - chr5.4:48810727-48810746 MS.gene89512:intron 35.0%
TTCAACCAAATCTCTATCGT+TGG + chr5.4:48813853-48813872 None:intergenic 35.0%
TTCAGTGTAATTATAGGCGT+CGG + chr5.4:48809793-48809812 None:intergenic 35.0%
TTCTATGCAACTATGAAACG+AGG + chr5.4:48810951-48810970 None:intergenic 35.0%
TTCTCTATGGTTTAGTCCTA+GGG - chr5.4:48810535-48810554 MS.gene89512:intron 35.0%
TTGAACCAACGATAGAGATT+TGG - chr5.4:48813845-48813864 MS.gene89512:CDS 35.0%
TTTAGTACTTACCCAATCTC+GGG - chr5.4:48809977-48809996 MS.gene89512:intron 35.0%
TTTCTCTATGGTTTAGTCCT+AGG - chr5.4:48810534-48810553 MS.gene89512:intron 35.0%
TTTGAAGGTGGGAAACTAAT+TGG - chr5.4:48810406-48810425 MS.gene89512:intron 35.0%
TTTGACGGAAATGAAGTTGT+AGG + chr5.4:48814405-48814424 None:intergenic 35.0%
! AATGGCTTGCCTCATATATA+TGG + chr5.4:48811929-48811948 None:intergenic 35.0%
! AATTAGTTTCCCACCTTCAA+AGG + chr5.4:48810407-48810426 None:intergenic 35.0%
! AGAGTTCATTTAGAGTTACC+TGG - chr5.4:48813165-48813184 MS.gene89512:CDS 35.0%
! AGTTACTGACCTTACTGATT+CGG + chr5.4:48809693-48809712 None:intergenic 35.0%
! ATAAGTTTCTGTTGCTTACC+AGG + chr5.4:48813186-48813205 None:intergenic 35.0%
! ATCTTTTAACCAATACGGCA+AGG - chr5.4:48811041-48811060 MS.gene89512:CDS 35.0%
! ATGGCTTGCCTCATATATAT+GGG + chr5.4:48811928-48811947 None:intergenic 35.0%
! CCTACAATTCTAGTATTGAG+TGG - chr5.4:48810039-48810058 MS.gene89512:intron 35.0%
! CTGCCTATGATTTGGAAAAT+TGG - chr5.4:48810467-48810486 MS.gene89512:intron 35.0%
! CTTCTTTTGATCCCAAACTT+TGG - chr5.4:48809665-48809684 MS.gene89512:CDS 35.0%
! GGTGTTTCTTATGTTGGTAA+GGG - chr5.4:48809580-48809599 MS.gene89512:CDS 35.0%
! GGTTACTTTACAAGATTTGG+CGG - chr5.4:48810913-48810932 MS.gene89512:CDS 35.0%
! GTGTTTCTTATGTTGGTAAG+GGG - chr5.4:48809581-48809600 MS.gene89512:CDS 35.0%
! TCATTCCACCATTGATAACT+CGG + chr5.4:48809550-48809569 None:intergenic 35.0%
! TGCGACCTTAACTATTTTCT+TGG + chr5.4:48813906-48813925 None:intergenic 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5.4:48813083-48813102 None:intergenic 35.0%
! TTTTCCAATGGAGACTATGA+TGG + chr5.4:48811984-48812003 None:intergenic 35.0%
!! AAATCTCTATCGTTGGTTCA+AGG + chr5.4:48813846-48813865 None:intergenic 35.0%
!! ACAAAATTGGAGGCATCATT+TGG - chr5.4:48813295-48813314 MS.gene89512:intron 35.0%
!! ATGATTTTGGCCGTTAAATC+AGG - chr5.4:48811515-48811534 MS.gene89512:intron 35.0%
!! CAAAATTGGAGGCATCATTT+GGG - chr5.4:48813296-48813315 MS.gene89512:intron 35.0%
!! GATTAGTCTCCTGAAGTATT+CGG - chr5.4:48810110-48810129 MS.gene89512:intron 35.0%
!!! GTGAAGGTTGTTGTTTTTGA+CGG + chr5.4:48814420-48814439 None:intergenic 35.0%
AATCCAGTGAAACAGTTGGT+AGG - chr5.4:48814632-48814651 MS.gene89512:CDS 40.0%
AATGAAGGTGATTGGAACTG+AGG - chr5.4:48810213-48810232 MS.gene89512:intron 40.0%
ACGCAACATGTAAATTGCCA+CGG + chr5.4:48812584-48812603 None:intergenic 40.0%
AGACTTTGTAGCTGCAATTG+TGG + chr5.4:48813930-48813949 None:intergenic 40.0%
AGGTACATTAGTCGGTGAAT+CGG + chr5.4:48809362-48809381 None:intergenic 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5.4:48811585-48811604 MS.gene89512:intron 40.0%
ATAGAACAAGGACGATCTAG+TGG - chr5.4:48810965-48810984 MS.gene89512:CDS 40.0%
ATCCAGAACGATAATGTGTC+TGG + chr5.4:48813023-48813042 None:intergenic 40.0%
ATGTCCATCATAGTCTCCAT+TGG - chr5.4:48811977-48811996 MS.gene89512:intron 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5.4:48812908-48812927 None:intergenic 40.0%
ATTGGACCAAAGTCAAGAGA+CGG - chr5.4:48813131-48813150 MS.gene89512:CDS 40.0%
CACTCTATTAAAGGTGAGCA+TGG - chr5.4:48811359-48811378 MS.gene89512:CDS 40.0%
CATGCTCACCTTTAATAGAG+TGG + chr5.4:48811361-48811380 None:intergenic 40.0%
CCAATACGGCAAGGAAAAAA+TGG - chr5.4:48811050-48811069 MS.gene89512:CDS 40.0%
CCATTCTAAGCCATCAATGA+TGG - chr5.4:48811944-48811963 MS.gene89512:intron 40.0%
CGGTGTTTCTTATGTTGGTA+AGG - chr5.4:48809579-48809598 MS.gene89512:CDS 40.0%
CTAACACAACCCTACAAAAC+TGG - chr5.4:48810619-48810638 MS.gene89512:intron 40.0%
CTCAAATTATTAGCGTGTCG+GGG - chr5.4:48809825-48809844 MS.gene89512:CDS 40.0%
CTCATTCTCATGTCTGTCAT+TGG + chr5.4:48814284-48814303 None:intergenic 40.0%
CTGCCATATTGAAGTTTGGT+TGG + chr5.4:48812766-48812785 None:intergenic 40.0%
CTGTTTGTGAAGCCAAAGAA+AGG - chr5.4:48814599-48814618 MS.gene89512:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5.4:48814725-48814744 MS.gene89512:CDS 40.0%
CTTCAAGGAGATTCCTTTGA+AGG - chr5.4:48810391-48810410 MS.gene89512:intron 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5.4:48812889-48812908 MS.gene89512:intron 40.0%
GGTAACGTTGAGATTGCAAA+AGG + chr5.4:48809428-48809447 None:intergenic 40.0%
GGTAAGGGGATAAGATTGAA+TGG - chr5.4:48809595-48809614 MS.gene89512:CDS 40.0%
GGTCTCAAACCATATACCAT+CGG + chr5.4:48810008-48810027 None:intergenic 40.0%
GTATACCGAGTTATCAATGG+TGG - chr5.4:48809542-48809561 MS.gene89512:CDS 40.0%
GTGGGGTCTAATGAAAATGT+AGG + chr5.4:48811903-48811922 None:intergenic 40.0%
TAAGCCATCAATGATGGTCA+TGG - chr5.4:48811950-48811969 MS.gene89512:intron 40.0%
TCAGGTTACATCTGGAGATT+GGG - chr5.4:48813478-48813497 MS.gene89512:intron 40.0%
TCGGTATACCGAGTTATCAA+TGG - chr5.4:48809539-48809558 MS.gene89512:CDS 40.0%
TCTATCATTGCAATGCAGGA+GGG - chr5.4:48814216-48814235 MS.gene89512:intron 40.0%
TCTTATGTGAGAGGTCTTCA+AGG - chr5.4:48810376-48810395 MS.gene89512:intron 40.0%
TCTTGGAAGTGAGAGAATTG+AGG + chr5.4:48812878-48812897 None:intergenic 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5.4:48814628-48814647 MS.gene89512:CDS 40.0%
TTAGTACTTACCCAATCTCG+GGG - chr5.4:48809978-48809997 MS.gene89512:intron 40.0%
TTCTATCATTGCAATGCAGG+AGG - chr5.4:48814215-48814234 MS.gene89512:intron 40.0%
TTGCACGGTGTTTCTTATGT+TGG - chr5.4:48809574-48809593 MS.gene89512:CDS 40.0%
! AAGGAGATTCCTTTGAAGGT+GGG - chr5.4:48810395-48810414 MS.gene89512:intron 40.0%
! AAGGGGAAGAATTTTGTACG+TGG + chr5.4:48809409-48809428 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5.4:48809681-48809700 MS.gene89512:CDS 40.0%
! AGGGGAAGAATTTTGTACGT+GGG + chr5.4:48809408-48809427 None:intergenic 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5.4:48814766-48814785 MS.gene89512:CDS 40.0%
! ATCCAGTGAAACAGTTGGTA+GGG - chr5.4:48814633-48814652 MS.gene89512:CDS 40.0%
! CCATCATTGATGGCTTAGAA+TGG + chr5.4:48811947-48811966 None:intergenic 40.0%
! GAAGAATTTTGTACGTGGGT+TGG + chr5.4:48809404-48809423 None:intergenic 40.0%
! GAGTAAGGAGGTACATTAGT+CGG + chr5.4:48809370-48809389 None:intergenic 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5.4:48814767-48814786 MS.gene89512:CDS 40.0%
! GTATTGAGTGGGTTCATACA+TGG - chr5.4:48810051-48810070 MS.gene89512:intron 40.0%
! TATCGTTCTGGATGTACTGA+TGG - chr5.4:48813030-48813049 MS.gene89512:CDS 40.0%
! TGGCTTGCCTCATATATATG+GGG + chr5.4:48811927-48811946 None:intergenic 40.0%
! TGGTATATGGTTTGAGACCT+AGG - chr5.4:48810009-48810028 MS.gene89512:intron 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5.4:48814772-48814791 MS.gene89512:CDS 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5.4:48812895-48812914 None:intergenic 40.0%
!! ACTGATTCGGTACCAAAGTT+TGG + chr5.4:48809680-48809699 None:intergenic 40.0%
!! ATGCACTAGCCAGTTTTGTA+GGG + chr5.4:48810631-48810650 None:intergenic 40.0%
!! ATGGAGACTATGATGGACAT+TGG + chr5.4:48811977-48811996 None:intergenic 40.0%
!! CTGATTCGGTACCAAAGTTT+GGG + chr5.4:48809679-48809698 None:intergenic 40.0%
!! TATGCACTAGCCAGTTTTGT+AGG + chr5.4:48810632-48810651 None:intergenic 40.0%
!! TCTTTTGGGTACCATGTCAT+TGG + chr5.4:48814248-48814267 None:intergenic 40.0%
!! TGGAGACTATGATGGACATT+GGG + chr5.4:48811976-48811995 None:intergenic 40.0%
!!! CCATTTTTTCCTTGCCGTAT+TGG + chr5.4:48811053-48811072 None:intergenic 40.0%
!!! GTTTTCGAGTATCGAATGAG+TGG + chr5.4:48814456-48814475 None:intergenic 40.0%
AACCCTACCAACTGTTTCAC+TGG + chr5.4:48814638-48814657 None:intergenic 45.0%
AAGAGGACAAGAAACAGCTG+GGG - chr5.4:48810321-48810340 MS.gene89512:intron 45.0%
AAGGTCTACGAATTCGGCTA+TGG - chr5.4:48814359-48814378 MS.gene89512:intron 45.0%
ACAAAACTCGGGTATCTGCT+TGG + chr5.4:48810148-48810167 None:intergenic 45.0%
ACAATGCTGGACAAGCTCAA+GGG - chr5.4:48810248-48810267 MS.gene89512:intron 45.0%
ACATCAGCTACAACATCCTC+TGG + chr5.4:48811604-48811623 None:intergenic 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5.4:48814332-48814351 MS.gene89512:intron 45.0%
AGAACGATAATGTGTCTGGC+TGG + chr5.4:48813019-48813038 None:intergenic 45.0%
AGCCAGACACATTATCGTTC+TGG - chr5.4:48813018-48813037 MS.gene89512:intron 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5.4:48814299-48814318 MS.gene89512:intron 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5.4:48812909-48812928 None:intergenic 45.0%
CCTCATATATATGGGGAGTG+GGG + chr5.4:48811920-48811939 None:intergenic 45.0%
CCTTTGGACCTGTGTAGAAA+CGG + chr5.4:48814343-48814362 None:intergenic 45.0%
GAAGAGGACAAGAAACAGCT+GGG - chr5.4:48810320-48810339 MS.gene89512:intron 45.0%
GAAGGTGGGAAACTAATTGG+AGG - chr5.4:48810409-48810428 MS.gene89512:intron 45.0%
GAGCCAAAGACATTGTGTCA+CGG - chr5.4:48809458-48809477 MS.gene89512:CDS 45.0%
GCAGCCGTAAGAATGATTTG+AGG + chr5.4:48809646-48809665 None:intergenic 45.0%
GCCTCATATATATGGGGAGT+GGG + chr5.4:48811921-48811940 None:intergenic 45.0%
GGTCCAAAGGTCTACGAATT+CGG - chr5.4:48814353-48814372 MS.gene89512:intron 45.0%
GTAGAAACGGTAGGTTCTAC+CGG + chr5.4:48814330-48814349 None:intergenic 45.0%
GTATCGAATGAGTGGTTGAC+TGG + chr5.4:48814448-48814467 None:intergenic 45.0%
GTCAGGTTACATCTGGAGAT+TGG - chr5.4:48813477-48813496 MS.gene89512:intron 45.0%
GTGAGCATGGCCTATTTAGT+TGG - chr5.4:48811372-48811391 MS.gene89512:CDS 45.0%
GTGTTTCCGTCTCTTGACTT+TGG + chr5.4:48813140-48813159 None:intergenic 45.0%
TACAATGCTGGACAAGCTCA+AGG - chr5.4:48810247-48810266 MS.gene89512:intron 45.0%
TAGAAACGGTAGGTTCTACC+GGG + chr5.4:48814329-48814348 None:intergenic 45.0%
TAGCCGAATTCGTAGACCTT+TGG + chr5.4:48814359-48814378 None:intergenic 45.0%
TGCACGCAGTTATGTAGTTG+TGG - chr5.4:48813605-48813624 MS.gene89512:CDS 45.0%
TGCCTCATATATATGGGGAG+TGG + chr5.4:48811922-48811941 None:intergenic 45.0%
TGCTTACTAAATGGGTGCAC+AGG + chr5.4:48813790-48813809 None:intergenic 45.0%
TGGTGGAATGAAGCTTTGCA+CGG - chr5.4:48809559-48809578 MS.gene89512:CDS 45.0%
TTCTTGCAGCTTCAAGAGCA+AGG + chr5.4:48812828-48812847 None:intergenic 45.0%
TTGGAGATGTCACAGGAGTA+AGG + chr5.4:48809385-48809404 None:intergenic 45.0%
! AAATGAGAGTGGTGTCAAGG+TGG - chr5.4:48814736-48814755 MS.gene89512:CDS 45.0%
! AAGCTCAAGGGATGACGTTT+TGG - chr5.4:48810260-48810279 MS.gene89512:intron 45.0%
! ACAAATACTGGAAGCATGGC+TGG - chr5.4:48814560-48814579 MS.gene89512:CDS 45.0%
! AGCAAATGAGAGTGGTGTCA+AGG - chr5.4:48814733-48814752 MS.gene89512:CDS 45.0%
! AGCTCAAGGGATGACGTTTT+GGG - chr5.4:48810261-48810280 MS.gene89512:intron 45.0%
! CAAATACTGGAAGCATGGCT+GGG - chr5.4:48814561-48814580 MS.gene89512:CDS 45.0%
! CAAGGAGATTCCTTTGAAGG+TGG - chr5.4:48810394-48810413 MS.gene89512:intron 45.0%
! GTGTTTGGTGACTATAACCC+TGG - chr5.4:48813363-48813382 MS.gene89512:intron 45.0%
! TGGTTGACTGGTTGATGTGA+AGG + chr5.4:48814436-48814455 None:intergenic 45.0%
!! ATCATTTGGGCTGGTTATCC+TGG - chr5.4:48813309-48813328 MS.gene89512:intron 45.0%
!! GCACGGTCGATTTGAGATAT+GGG + chr5.4:48812691-48812710 None:intergenic 45.0%
!! GTAATTATAGGCGTCGGTGT+CGG + chr5.4:48809787-48809806 None:intergenic 45.0%
!! GTCTTTGGCTCTTTGAGTGA+TGG + chr5.4:48809449-48809468 None:intergenic 45.0%
!!! TTTATTGTTTATTTTATATT+GGG - chr5.4:48813729-48813748 MS.gene89512:CDS 5.0%
!!! TTTTATTGTTTATTTTATAT+TGG - chr5.4:48813728-48813747 MS.gene89512:CDS 5.0%
AACAGCTGGGGAAGATCCTT+TGG - chr5.4:48810333-48810352 MS.gene89512:intron 50.0%
ATCCTGGTGAAACTGGTGGA+AGG - chr5.4:48813325-48813344 MS.gene89512:intron 50.0%
CAGCTTCAAGAGCAAGGTCT+AGG + chr5.4:48812822-48812841 None:intergenic 50.0%
CATAGACACCGAACACGACA+AGG + chr5.4:48809858-48809877 None:intergenic 50.0%
CATCGGAAAACCCCGAGATT+GGG + chr5.4:48809991-48810010 None:intergenic 50.0%
CATTGTGTCACGGCTCACAT+TGG - chr5.4:48809468-48809487 MS.gene89512:CDS 50.0%
CCCCACTCCCCATATATATG+AGG - chr5.4:48811917-48811936 MS.gene89512:intron 50.0%
CCGTTTCTACACAGGTCCAA+AGG - chr5.4:48814340-48814359 MS.gene89512:intron 50.0%
CTGACGTGACCGAATACTTC+AGG + chr5.4:48810122-48810141 None:intergenic 50.0%
GAATTGTAGGCCACACTCCT+AGG + chr5.4:48810029-48810048 None:intergenic 50.0%
GAGATGTCACAGGAGTAAGG+AGG + chr5.4:48809382-48809401 None:intergenic 50.0%
GAGCCGTGACACAATGTCTT+TGG + chr5.4:48809464-48809483 None:intergenic 50.0%
GAGGGAGACTACCAATGACA+TGG - chr5.4:48814234-48814253 MS.gene89512:intron 50.0%
GAGGTGGAAAGGGTGAAGTT+GGG - chr5.4:48814678-48814697 MS.gene89512:CDS 50.0%
GATCCATCATCAGGCTATCC+CGG - chr5.4:48814308-48814327 MS.gene89512:intron 50.0%
GCTCTTGAAGCTGCAAGAAG+TGG - chr5.4:48812829-48812848 MS.gene89512:intron 50.0%
GCTGGTTATCCTGGTGAAAC+TGG - chr5.4:48813318-48813337 MS.gene89512:intron 50.0%
GGAAGAGGACAAGAAACAGC+TGG - chr5.4:48810319-48810338 MS.gene89512:intron 50.0%
GGCTTCACAAACAGCAACAC+AGG + chr5.4:48814593-48814612 None:intergenic 50.0%
GGTGTCAAGGTGGTTGAAGA+AGG - chr5.4:48814746-48814765 MS.gene89512:CDS 50.0%
GGTTACATCTGGAGATTGGG+CGG - chr5.4:48813481-48813500 MS.gene89512:intron 50.0%
GGTTATCCTGGTGAAACTGG+TGG - chr5.4:48813321-48813340 MS.gene89512:intron 50.0%
GTAGCTGATGTACTTCGAGC+TGG - chr5.4:48811613-48811632 MS.gene89512:intron 50.0%
GTCAAGGTGGTTGAAGAAGG+TGG - chr5.4:48814749-48814768 MS.gene89512:CDS 50.0%
GTCAGTGTCCTTGTCGTGTT+CGG - chr5.4:48809847-48809866 MS.gene89512:CDS 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5.4:48809348-48809367 None:intergenic 50.0%
GTGATTGGAACTGAGGCTAG+AGG - chr5.4:48810220-48810239 MS.gene89512:intron 50.0%
TAACTCGGTATACCGAGTCG+AGG + chr5.4:48809535-48809554 None:intergenic 50.0%
TCAGGGATGGATGTAGAGTG+TGG - chr5.4:48812616-48812635 MS.gene89512:intron 50.0%
TCCTGGTGAAACTGGTGGAA+GGG - chr5.4:48813326-48813345 MS.gene89512:intron 50.0%
TCTTGTCCTCTTCCCCATCT+TGG + chr5.4:48810313-48810332 None:intergenic 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5.4:48814339-48814358 None:intergenic 50.0%
TGGGCCATGACCATCATTGA+TGG + chr5.4:48811957-48811976 None:intergenic 50.0%
! CGGGGTTTTCCGATGGTATA+TGG - chr5.4:48809996-48810015 MS.gene89512:intron 50.0%
! GCTAGAGGAGTGTACAATGC+TGG - chr5.4:48810235-48810254 MS.gene89512:intron 50.0%
! GGTAGGGTTTGAGAGTGTGA+CGG - chr5.4:48814649-48814668 MS.gene89512:CDS 50.0%
! TAGTGTTACTGCACGCAGTC+AGG - chr5.4:48813460-48813479 MS.gene89512:intron 50.0%
! TGGTTTGAGACCTAGGAGTG+TGG - chr5.4:48810016-48810035 MS.gene89512:intron 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5.4:48814656-48814675 MS.gene89512:CDS 50.0%
!! ATTGGAGGCATCATTTGGGC+TGG - chr5.4:48813300-48813319 MS.gene89512:intron 50.0%
!! GGCACGGTCGATTTGAGATA+TGG + chr5.4:48812692-48812711 None:intergenic 50.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5.4:48814668-48814687 MS.gene89512:CDS 55.0%
ACTGAAGCTTCCGCATACGC+AGG - chr5.4:48811271-48811290 MS.gene89512:CDS 55.0%
AGGGATCCAAGATGGGGAAG+AGG - chr5.4:48810304-48810323 MS.gene89512:intron 55.0%
ATACCGAGTCGAGGAATGGC+AGG + chr5.4:48809526-48809545 None:intergenic 55.0%
ATATTGGTGGGACCCCTTCC+CGG + chr5.4:48811299-48811318 None:intergenic 55.0%
ATGCGGAAGCTTCAGTGCAC+CGG + chr5.4:48811267-48811286 None:intergenic 55.0%
CCATCGGAAAACCCCGAGAT+TGG + chr5.4:48809992-48810011 None:intergenic 55.0%
CGGTATACCGAGTCGAGGAA+TGG + chr5.4:48809530-48809549 None:intergenic 55.0%
CTACCGGGATAGCCTGATGA+TGG + chr5.4:48814314-48814333 None:intergenic 55.0%
CTGAAGCTTCCGCATACGCA+GGG - chr5.4:48811272-48811291 MS.gene89512:CDS 55.0%
GCACGCAGTCAGGTTACATC+TGG - chr5.4:48813470-48813489 MS.gene89512:intron 55.0%
GGAGGTGGAAAGGGTGAAGT+TGG - chr5.4:48814677-48814696 MS.gene89512:CDS 55.0%
TGAAACTGGTGGAAGGGCTC+TGG - chr5.4:48813332-48813351 MS.gene89512:intron 55.0%
! AGGGTTTGAGAGTGTGACGG+TGG - chr5.4:48814652-48814671 MS.gene89512:CDS 55.0%
! CCAATCTCGGGGTTTTCCGA+TGG - chr5.4:48809989-48810008 MS.gene89512:intron 55.0%
! GCTCTGGCTCAGGTTGTGTT+TGG - chr5.4:48813348-48813367 MS.gene89512:intron 55.0%
!! ACGTGGGTTGGAGATGTCAC+AGG + chr5.4:48809392-48809411 None:intergenic 55.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5.4:48814662-48814681 MS.gene89512:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5.4:48814667-48814686 MS.gene89512:CDS 60.0%
GCCCTTCCACCAGTTTCACC+AGG + chr5.4:48813330-48813349 None:intergenic 60.0%
GCTCCTGCCATTCCTCGACT+CGG - chr5.4:48809520-48809539 MS.gene89512:CDS 60.0%
TGCGGAAGCTTCAGTGCACC+GGG + chr5.4:48811266-48811285 None:intergenic 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5.4:48814659-48814678 MS.gene89512:CDS 60.0%
CATACGCAGGGTCCGGGAAG+GGG - chr5.4:48811284-48811303 MS.gene89512:CDS 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr5.4:48811284-48811303 None:intergenic 65.0%
CTTCCGCATACGCAGGGTCC+GGG - chr5.4:48811278-48811297 MS.gene89512:CDS 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr5.4:48811283-48811302 MS.gene89512:CDS 65.0%
GCTTCCGCATACGCAGGGTC+CGG - chr5.4:48811277-48811296 MS.gene89512:CDS 65.0%
! TGGTGGAAGGGCTCTGGCTC+AGG - chr5.4:48813338-48813357 MS.gene89512:intron 65.0%
!! GTCGGTGTCGGACACGACAC+AGG + chr5.4:48809775-48809794 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr5.4:48811282-48811301 MS.gene89512:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 48809289 48814823 48809289 ID=MS.gene89512
chr5.4 mRNA 48809289 48814823 48809289 ID=MS.gene89512.t1;Parent=MS.gene89512
chr5.4 exon 48814410 48814823 48814410 ID=MS.gene89512.t1.exon1;Parent=MS.gene89512.t1
chr5.4 CDS 48814410 48814823 48814410 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
chr5.4 exon 48813590 48813892 48813590 ID=MS.gene89512.t1.exon2;Parent=MS.gene89512.t1
chr5.4 CDS 48813590 48813892 48813590 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
chr5.4 exon 48813029 48813198 48813029 ID=MS.gene89512.t1.exon3;Parent=MS.gene89512.t1
chr5.4 CDS 48813029 48813198 48813029 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
chr5.4 exon 48812478 48812575 48812478 ID=MS.gene89512.t1.exon4;Parent=MS.gene89512.t1
chr5.4 CDS 48812478 48812575 48812478 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
chr5.4 exon 48810728 48811492 48810728 ID=MS.gene89512.t1.exon5;Parent=MS.gene89512.t1
chr5.4 CDS 48810728 48811492 48810728 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
chr5.4 exon 48809289 48809878 48809289 ID=MS.gene89512.t1.exon6;Parent=MS.gene89512.t1
chr5.4 CDS 48809289 48809878 48809289 ID=cds.MS.gene89512.t1;Parent=MS.gene89512.t1
Gene Sequence

>MS.gene89512

ATGGGCCAATTTTCCATCACCATTACTTTCATTTTTCTCTTCTTAACTCGCTACAACCAACTCGTTCATGCCGATTCACCGACTAATGTACCTCCTTACTCCTGTGACATCTCCAACCCACGTACAAAATTCTTCCCCTTTTGCAATCTCAACGTTACCATCACTCAAAGAGCCAAAGACATTGTGTCACGGCTCACATTGGATGAGAAAATCTCTCAACTCGTTAACACAGCTCCTGCCATTCCTCGACTCGGTATACCGAGTTATCAATGGTGGAATGAAGCTTTGCACGGTGTTTCTTATGTTGGTAAGGGGATAAGATTGAATGGTAGTGTTACAGCTGCAACTAGTTTTCCTCAAATCATTCTTACGGCTGCTTCTTTTGATCCCAAACTTTGGTACCGAATCAGTAAGGTCAGTAACTCTTTTAACACATGTTTGACAAAATGTTGTTGGTTGAAACACTTCTTGAATTAGGCGTGTCCTGTGTCGTGTCCGACACCGACGCCTATAATTACACTGAATTATGTGATTTTCTCAAATTATTAGCGTGTCGGGGTCAGTGTCCTTGTCGTGTTCGGTGTCTATGTCCGTATCTGTGCTTCGTTACATTCAAATCATTTAACCCATATTTGGATTTTTTTGAAGATTAAAATTATTTTTTTCATTTAGTATTTAGTAAATAAGTTTTAGTACTTACCCAATCTCGGGGTTTTCCGATGGTATATGGTTTGAGACCTAGGAGTGTGGCCTACAATTCTAGTATTGAGTGGGTTCATACATGGTTATGATTTCAAATGAATTCTACTACTGGGCGGTGAGATTAGTCTCCTGAAGTATTCGGTCACGTCAGTCACCAAGCAGATACCCGAGTTTTGTTTGTATTGTAATTTGTAATTTGTAATTATTATTATGTGTTGTATGAATGAAGGTGATTGGAACTGAGGCTAGAGGAGTGTACAATGCTGGACAAGCTCAAGGGATGACGTTTTGGGCACCAAACATAAACATATTTAGGGATCCAAGATGGGGAAGAGGACAAGAAACAGCTGGGGAAGATCCTTTGGTAAATTCAAAGTATGGTGTTTCTTATGTGAGAGGTCTTCAAGGAGATTCCTTTGAAGGTGGGAAACTAATTGGAGGTCGTCTTAAAGCTTCTGCTTGTTGCAAACACTTTACTGCCTATGATTTGGAAAATTGGAAGGGTGTGAATCGTTATGTTTTTGATGCCAAAGTAAGTTTTCTTTTCTCTATGGTTTAGTCCTAGGGTGATTAATTCTATGGTGAACAAATAAGATAAGTCTAGTATTCTTAAAATCGTGGTTGGAGTCTAACACAACCCTACAAAACTGGCTAGTGCATATTAGACAATGTCGTCCTCGAATTTGTCTTTTAGTTTTGTTTGTTGTGTTGTGCAGACTGCAAAGCATGCTTTGTTTTATGTCGTTGTTGAATCCTTGGAAATTGAATCATGACTTGCAACAGAACAGTTAATTTAATTTTGAAATTCAAAAATTATATGAAACCTTTTCTATATACTGTTATGCTAATGATTCTTATTCTTATATTCTTCAACTTTTAACTTTTTTCCATTTTAATAATCCAAATCCATTCTAATAATTCAGGTTACTTTACAAGATTTGGCGGATACGTATCAACCCTCGTTTCATAGTTGCATAGAACAAGGACGATCTAGTGGAATAATGTGTGCTTACAATCGTGTTAATGGAGTTCCAAACTGTGCAGATTACAATCTTTTAACCAATACGGCAAGGAAAAAATGGAATTTCAATGGGTATATATAATTATTTCAATTTTTTTGTTAATTCTTTAATCTACTTTTTAGTTCTTATAAATTACAAAAGTGGAAACACAAAATATGTAGTTTTGTAATTTTTAGATATTTAAAAGTGAGTACAAAAATGTAAATTTTATAAAAATTTAACAACATATTTAAAAACATATAAAAGGCAACCCGGTGCACTGAAGCTTCCGCATACGCAGGGTCCGGGAAGGGGTCCCACCAATATCTTCTATTAAACAATATCTCCTTTATGAAACAATGTTTTCCACTCTATTAAAGGTGAGCATGGCCTATTTAGTTGGTGAAACAGTTTTCAATTCAAACTTTTCAGTTTTCTCTCTTTTTGAAGCTACATATTTATAATGTATGATTCATCAAAATGTGAAATTGAAATTTAATTTTTAATTACTTGATTAGTATGAATGATTTTGGCCGTTAAATCAGGTATATTGCGTCGGATTGTGACGCAGTTCGATACATATATGAGAAACAAGGTTATGCAAAAACACCAGAGGATGTTGTAGCTGATGTACTTCGAGCTGGTATACTTTCACTCTTCCTTTGTTTATGTCATAATCAGAAGTAGATAAATAGAATTATTATGTGTTTACGGATTCTTATCAAAATTTACTTGAACTTTTATGTGTTTTAGAATTGATTTATAACTCTAAATGAAATCACAGCAATGACAATGTGACCTTAAAATATCGTTATCTTACTTTATCAATGGTCTCAATGGAAGGTACTTTTCTCATTAGTATTTTTGTCGGTTTACAATTTTTGCTTATATTAAGTCACATGGTTTGGCCTACATTTTCATTAGACCCCACTCCCCATATATATGAGGCAAGCCATTCTAAGCCATCAATGATGGTCATGGCCCAATGTCCATCATAGTCTCCATTGGAAAAAAGTTGGTGATAATGTAGATTTGTATACAATTTATATGTTTATTTTCATCATAATTTTTAGTATAGGTTGCAGACAAAGATGTAACATAATTAGAGGTATATTAATAAATAAATAAATAATGAACACAATTAGATAGCATTTTGATTGTCATCACTTAGTTGTTTTAGTTCTGGTTTAGTTAAAGTTGTGACTTCCTTCTTCTTTTGTATTTTGTTTGCAACTGTCTAAGATAAATTAAGATTCATTCATGCACTCTAAAGTTTTATGATTGCATACTTTTCTTAATTTTACTCAATTTGGACATTTACTACCTTAAGCTTTATAATCACACTTTCTTTGCCTTAGTTTTAGTTTATGTCAAACCTCTTTGTCTCTAGTTCTATAATCACTTTAGTTATCTTTATTTTGCAACAGAACCTTAGAATTAGTCTATGTTTAGGAGAATCATGTTGTACTACCGTTATTTCGGTACAAGTTATACTTTAGAACTTTTCAACAAAATCATAGTATCATTGTAATTTTGTCAAACTCGCCATAATTTCAAACATACACAAGTACTATTATAATTTTGATGAACCGTGGCAATTTACATGTTGCGTGATCAAAATTTTTCAGGGATGGATGTAGAGTGTGGTGATTACATGACAAAGCATGCAAAGTCAGCAGTATTACAAAAAAAAATTCCCATATCTCAAATCGACCGTGCCCTACACAATCTATTTACCATTAGAATAAGACTAGGTTTGTTTGATGGGAATCCAACCAAACTTCAATATGGCAGAATTGGTCCAAATCAAGTATGCTCTAAAGAAAACCTAGACCTTGCTCTTGAAGCTGCAAGAAGTGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCTCACTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCAATAGTTCTTTTAGCAAACTATTTTGGTCCTCCTTGTAAACAAGTATCCATATTAAAAGGCTTTTACACTTATGCCAGCCAGACACATTATCGTTCTGGATGTACTGATGGAGTAAAGTGTGCTTCAGCTGAAATTGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGACCAAAGTCAAGAGACGGAAACACTTGATAGAGTTCATTTAGAGTTACCTGGTAAGCAACAGAAACTTATTAACAGTGTTGCTAAAGCTTCTAAGAAGCCTGTTATTTTGGTAATTTTGTGTGGTGGTCCTGTTGATATTACTTTTGCTAAGAATAATGACAAAATTGGAGGCATCATTTGGGCTGGTTATCCTGGTGAAACTGGTGGAAGGGCTCTGGCTCAGGTTGTGTTTGGTGACTATAACCCTGGTTAGTTTTCTTCTGTCTTATCCATGAACAAATAAACATACATAATGTGGTAAAAAAATGGATTTGGATTGTTTGTAGTGTTACTGCACGCAGTCAGGTTACATCTGGAGATTGGGCGGTTCAGATTTCAATGACGATTTTGATTTTTTTTAAAATGTAAAATATCAAGTTTGAAATGTAGACCGCTCAATCTTGATTGAATGGTTCACGTCTTGCTAACTGCACGCAGTTATGTAGTTGTGGCTGCGCATGACCAAGATCCTTTAAACATGTATAAACTTCATAGATTCTGAAAAGTCTTAATTATTAAATGAGAGAATATTTAGTTAGGCAAAAAGAATTTTTTTATTGTTTATTTTATATTGGGAAACAAGGGAAAGAGTCTGAAAAATTAGCTTCGATCCTGTGCACCCATTTAGTAAGCACAACTAAATCTCAATTACTGGATGCGGAATGAACCTTGAACCAACGATAGAGATTTGGTTGAATTGACTAGATGGCAGCAGAGTATCCAGATTCCAAGAAAATAGTTAAGGTCGCAACCACAATTGCAGCTACAAAGTCTTCATGTCATAGTATTTAAAAATTGTCTGCAACTGTGATTGTGACCGCAAACAAACACTATTTTCTATACCATGTATGTAGCAATTTGATATATATTCAACAAATGTTTTCAATGTTACTTAAAAGTGTCCACAATTGAAAACATTGATTATAGTGTTGTATGATTTGTCTTGTTGACCGAAATACATTGTATATATCCCCCAAATAACTTTTTCTAGTATATTTTCCTAAAACTACTATTTCTCAACTAATGTGATGCTTTGATATTCTATCATTGCAATGCAGGAGGGAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCCGGTAGAACCTACCGTTTCTACACAGGTCCAAAGGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAACTTCATTTCCGTCAAAAACAACAACCTTCACATCAACCAGTCAACCACTCATTCGATACTCGAAAACTCTGAAACAATCCGTTACAAACTTGGTTCAGAGTTAGGCAAAAAAGCATGTAAAACCATGTCCATTTCTGTAACATTGGGAATTACAAATACTGGAAGCATGGCTGGGAAACATCCTGTGTTGCTGTTTGTGAAGCCAAAGAAAGGTAGAAATGGAAATCCAGTGAAACAGTTGGTAGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGTGAAGTTGGGTTCGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTCAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCACTCTTTGA
Protein sequence

>MS.gene89512.t1

MGQFSITITFIFLFLTRYNQLVHADSPTNVPPYSCDISNPRTKFFPFCNLNVTITQRAKDIVSRLTLDEKISQLVNTAPAIPRLGIPSYQWWNEALHGVSYVGKGIRLNGSVTAATSFPQIILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYGVSYVRGLQGDSFEGGKLIGGRLKASACCKHFTAYDLENWKGVNRYVFDAKVTLQDLADTYQPSFHSCIEQGRSSGIMCAYNRVNGVPNCADYNLLTNTARKKWNFNGYIASDCDAVRYIYEKQGYAKTPEDVVADVLRAGMDVECGDYMTKHAKSAVLQKKIPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGRIGPNQVCSKENLDLALEAARSGIVLLKNTASILSLPRVNTLGVIGPNANKSSIVLLANYFGPPCKQVSILKGFYTYASQTHYRSGCTDGVKCASAEIDRAVEVAKISDYVILVMGLDQSQETETLDRVHLELPGKQQKLINSVAKASKKPVILVILCGGPVDITFAKNNDKIGGIIWAGYPGETGGRALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYNFISVKNNNLHINQSTTHSILENSETIRYKLGSELGKKACKTMSISVTLGITNTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISITL