AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90413.t1 MTR_3g017500 97.250 400 8 1 1 397 1 400 0.0 795
MS.gene90413.t1 MTR_3g017500 90.680 397 10 1 1 397 1 370 0.0 724
MS.gene90413.t1 MTR_8g038400 74.648 355 89 1 44 397 13 367 0.0 546
MS.gene90413.t1 MTR_8g088320 47.727 352 147 5 44 395 6 320 9.75e-115 338
MS.gene90413.t1 MTR_2g030230 46.000 350 151 4 48 397 18 329 2.46e-107 319
MS.gene90413.t1 MTR_2g011590 45.283 159 78 2 239 393 3 156 1.05e-37 134
MS.gene90413.t1 MTR_3g067585 44.444 162 81 2 236 393 1 157 1.79e-37 133
MS.gene90413.t1 MTR_8g107340 41.250 160 93 1 236 395 17 175 4.61e-37 133
MS.gene90413.t1 MTR_2g027100 45.860 157 84 1 236 391 1 157 2.26e-34 125
MS.gene90413.t1 MTR_1g031650 44.231 156 85 2 239 393 5 159 6.65e-34 124
MS.gene90413.t1 MTR_6g069470 38.728 173 102 2 223 395 3 171 2.83e-31 117
MS.gene90413.t1 MTR_4g084280 39.394 165 91 2 236 396 1 160 1.14e-30 115
MS.gene90413.t1 MTR_6g080710 43.478 115 64 1 51 165 19 132 6.74e-24 100
MS.gene90413.t1 MTR_2g080950 41.803 122 63 3 51 172 19 132 1.74e-23 102
MS.gene90413.t1 MTR_8g464390 44.248 113 55 3 51 163 19 123 9.06e-23 100
MS.gene90413.t1 MTR_1g031650 42.623 122 69 1 272 393 2 122 6.69e-22 90.9
MS.gene90413.t1 MTR_8g100100 39.583 144 61 4 51 169 497 639 2.63e-20 93.6
MS.gene90413.t1 MTR_8g100100 39.583 144 61 4 51 169 503 645 2.84e-20 93.6
MS.gene90413.t1 MTR_7g020860 39.552 134 56 3 54 163 508 640 6.71e-19 89.4
MS.gene90413.t1 MTR_8g067090 51.429 70 33 1 54 123 16 84 5.30e-18 85.5
MS.gene90413.t1 MTR_8g471120 51.429 70 33 1 54 123 16 84 5.30e-18 85.5
MS.gene90413.t1 MTR_7g020860 50.575 87 40 2 51 135 505 590 5.60e-18 86.3
MS.gene90413.t1 MTR_1g069000 48.052 77 39 1 50 126 6 81 9.12e-18 85.1
MS.gene90413.t1 MTR_8g067080 51.429 70 33 1 54 123 16 84 9.75e-18 84.7
MS.gene90413.t1 MTR_8g471110 51.429 70 33 1 54 123 16 84 9.75e-18 84.7
MS.gene90413.t1 MTR_8g067080 51.429 70 33 1 54 123 16 84 1.01e-17 84.7
MS.gene90413.t1 MTR_7g099830 48.052 77 39 1 50 126 6 81 2.98e-17 83.6
MS.gene90413.t1 MTR_3g098680 35.000 140 66 3 48 163 497 635 5.08e-17 83.6
MS.gene90413.t1 MTR_4g074170 41.818 110 55 5 32 133 457 565 3.64e-15 77.8
MS.gene90413.t1 MTR_1g008950 36.264 91 56 2 241 329 4 94 5.37e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90413.t1 AT3G07940 66.410 390 116 4 11 397 8 385 0.0 526
MS.gene90413.t1 AT4G05330 48.857 350 151 4 48 397 15 336 5.66e-118 347
MS.gene90413.t1 AT4G05330 48.857 350 151 4 48 397 15 336 5.66e-118 347
MS.gene90413.t1 AT4G21160 48.286 350 154 4 48 397 15 337 1.94e-117 345
MS.gene90413.t1 AT4G21160 48.286 350 154 4 48 397 15 337 1.94e-117 345
MS.gene90413.t1 AT4G21160 48.286 350 154 4 48 397 15 337 1.94e-117 345
MS.gene90413.t1 AT4G21160 48.286 350 154 4 48 397 15 337 1.94e-117 345
MS.gene90413.t1 AT3G07940 58.491 265 95 4 11 272 8 260 5.60e-106 313
MS.gene90413.t1 AT4G05330 48.916 323 137 4 75 397 7 301 4.01e-105 312
MS.gene90413.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.53e-37 133
MS.gene90413.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.53e-37 133
MS.gene90413.t1 AT1G70790 45.752 153 82 1 240 391 6 158 3.53e-37 133
MS.gene90413.t1 AT1G66360 42.593 162 92 1 236 396 1 162 9.26e-37 132
MS.gene90413.t1 AT1G70800 42.073 164 94 1 228 391 2 164 1.89e-36 131
MS.gene90413.t1 AT1G73580 42.500 160 91 1 236 395 4 162 2.71e-36 130
MS.gene90413.t1 AT1G70810 41.139 158 92 1 236 393 1 157 4.26e-34 124
MS.gene90413.t1 AT5G37740 41.875 160 91 1 236 393 1 160 1.33e-33 123
MS.gene90413.t1 AT2G01540 42.484 153 87 1 240 391 6 158 6.01e-33 122
MS.gene90413.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.53e-32 119
MS.gene90413.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.53e-32 119
MS.gene90413.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.53e-32 119
MS.gene90413.t1 AT5G47710 40.881 159 93 1 236 393 1 159 5.53e-32 119
MS.gene90413.t1 AT1G48590 39.024 164 91 2 236 395 6 164 6.96e-32 119
MS.gene90413.t1 AT1G48590 39.024 164 91 2 236 395 6 164 6.96e-32 119
MS.gene90413.t1 AT1G48590 37.097 186 96 3 226 395 15 195 1.07e-31 119
MS.gene90413.t1 AT1G23140 37.888 161 99 1 236 396 1 160 2.92e-31 117
MS.gene90413.t1 AT3G17980 36.585 164 95 2 236 395 13 171 6.12e-31 117
MS.gene90413.t1 AT5G37740 39.412 170 91 2 236 393 1 170 1.49e-30 115
MS.gene90413.t1 AT5G54310 38.235 170 89 3 51 212 19 180 6.39e-25 106
MS.gene90413.t1 AT3G17660 40.708 113 59 2 51 163 19 123 5.65e-24 98.2
MS.gene90413.t1 AT3G17660 40.708 113 59 2 51 163 19 123 1.18e-23 98.6
MS.gene90413.t1 AT3G17660 40.708 113 59 2 51 163 19 123 3.45e-23 97.8
MS.gene90413.t1 AT1G70790 43.697 119 66 1 274 391 3 121 2.80e-22 92.4
MS.gene90413.t1 AT5G13300 46.789 109 52 3 29 135 485 589 1.93e-19 90.9
MS.gene90413.t1 AT5G61980 40.146 137 57 3 51 163 501 636 9.29e-19 89.0
MS.gene90413.t1 AT2G35210 50.725 69 33 1 54 122 16 83 1.21e-17 84.3
MS.gene90413.t1 AT3G17660 37.931 116 48 4 51 163 19 113 1.83e-17 81.3
MS.gene90413.t1 AT2G35210 50.725 69 33 1 54 122 16 83 2.28e-17 83.6
MS.gene90413.t1 AT1G48590 29.570 186 78 4 226 395 15 163 2.60e-17 79.3
MS.gene90413.t1 AT5G46750 50.725 69 33 1 54 122 16 83 4.08e-17 82.8
MS.gene90413.t1 AT2G37550 46.753 77 40 1 50 126 6 81 9.36e-17 82.0
MS.gene90413.t1 AT2G37550 46.753 77 40 1 50 126 6 81 9.36e-17 82.0
MS.gene90413.t1 AT1G10870 40.000 130 57 5 59 169 478 605 1.04e-16 82.8
MS.gene90413.t1 AT4G17890 49.275 69 34 1 54 122 19 86 1.85e-16 80.9
MS.gene90413.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.45e-16 80.9
MS.gene90413.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.45e-16 80.9
MS.gene90413.t1 AT3G53710 46.154 78 41 1 50 127 6 82 2.45e-16 80.9
MS.gene90413.t1 AT4G17890 49.275 69 34 1 54 122 19 86 2.65e-16 80.5
MS.gene90413.t1 AT1G10870 38.519 135 57 5 59 169 478 610 4.19e-16 80.9
MS.gene90413.t1 AT1G60860 54.688 64 27 1 59 120 367 430 6.10e-15 77.0
MS.gene90413.t1 AT1G60860 54.688 64 27 1 59 120 478 541 7.02e-15 77.0
MS.gene90413.t1 AT1G60860 54.688 64 27 1 59 120 307 370 7.10e-15 76.6
MS.gene90413.t1 AT1G03370 37.778 90 55 1 243 331 3 92 9.37e-12 67.4
MS.gene90413.t1 AT1G03370 37.778 90 55 1 243 331 3 92 1.62e-11 66.6

Find 72 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATACTTACACCCATTT+TGG 0.186231 3.1:+10781184 None:intergenic
ATTAAGGTTAATGTGGTTAA+AGG 0.230072 3.1:-10779080 MS.gene90413:CDS
TGAATTTGTTGGATTGATTA+AGG 0.287189 3.1:-10779096 MS.gene90413:CDS
AGTCAATGCAGCTTGGAAAA+TGG 0.292719 3.1:-10778325 MS.gene90413:CDS
TCTTGCGTGGGATGGTATAA+AGG 0.303502 3.1:+10779902 None:intergenic
GTGGATCATCAGAGCCAAAA+TGG 0.335283 3.1:-10781198 MS.gene90413:CDS
AGAACAATTTAAATCCTGTT+TGG 0.340329 3.1:-10778868 MS.gene90413:CDS
TCAATGGAAGAATTCGGTTT+TGG 0.341563 3.1:+10780120 None:intergenic
ACGAACGTACCTTAGATATA+TGG 0.348879 3.1:+10780357 None:intergenic
CATTATTGATGATTTCTCAT+AGG 0.350483 3.1:+10778349 None:intergenic
GCAGGTATGGTTGAATTTGT+TGG 0.378256 3.1:-10779107 MS.gene90413:CDS
CCTTATGTCATCCTTTCTCT+TGG 0.379448 3.1:-10779020 MS.gene90413:CDS
AACATCAGGTCTTCAAGTCT+TGG 0.381673 3.1:-10780428 MS.gene90413:intron
GTCAATGCAGCTTGGAAAAT+GGG 0.386273 3.1:-10778324 MS.gene90413:CDS
CCTAGGAGTCCATATATCTA+AGG 0.390014 3.1:-10780366 MS.gene90413:intron
TATCTCATCTATTGAGTAAG+AGG 0.392319 3.1:+10778170 None:intergenic
TTAAGAGGAGGGATGTTCTC+AGG 0.396970 3.1:+10778821 None:intergenic
AGAGAGCGATGGATGTTATC+TGG 0.401047 3.1:-10781422 MS.gene90413:intron
CATCCTTTCTCTTGGTCACC+AGG 0.414383 3.1:-10779012 MS.gene90413:intron
CGCTCCTCAATGGAAGAATT+CGG 0.431409 3.1:+10780114 None:intergenic
GGAATAATTTCTCTTGAAGA+AGG 0.433305 3.1:-10778269 MS.gene90413:CDS
GGCTATCGTTTCGAAACAGC+TGG 0.433424 3.1:-10779788 MS.gene90413:CDS
TCTCAGGGATTGAAAGCATT+AGG 0.434077 3.1:+10778837 None:intergenic
ATTAGGCTTTCATTCCAAAC+AGG 0.437169 3.1:+10778854 None:intergenic
CTATGAGAAATCATCAATAA+TGG 0.437790 3.1:-10778348 MS.gene90413:CDS
AAACAACTAGAAATCGTATT+GGG 0.442080 3.1:-10779809 MS.gene90413:CDS
AGTCGATTCATTGGTCAACT+TGG 0.444047 3.1:-10780202 MS.gene90413:CDS
CAAACAACTAGAAATCGTAT+TGG 0.459695 3.1:-10779810 MS.gene90413:CDS
TTTATTTGCATCAAGTGCTC+TGG 0.459972 3.1:-10780401 MS.gene90413:CDS
TTTACTGTTATAGGCAGGTA+TGG 0.466561 3.1:-10779120 MS.gene90413:intron
GCTTGAGGAACTGCTCTGAC+TGG 0.472926 3.1:+10779869 None:intergenic
GACAATCTGATGCGTCAAGC+AGG 0.474603 3.1:-10781241 MS.gene90413:CDS
AAAATCAGAGCGCTCCTCAA+TGG 0.477617 3.1:+10780104 None:intergenic
AGACGAACAAGTCGATTCAT+TGG 0.483436 3.1:-10780211 MS.gene90413:CDS
TGAAGAAGGGAAAGTGAGAC+AGG 0.489048 3.1:-10778255 MS.gene90413:CDS
CTTGCGTGGGATGGTATAAA+GGG 0.496671 3.1:+10779903 None:intergenic
CCAAGAGAAAGGATGACATA+AGG 0.500819 3.1:+10779020 None:intergenic
TGACTTTGAGAATTTAAACT+TGG 0.501348 3.1:+10781446 None:intergenic
GATTCATTGGTCAACTTGGG+TGG 0.513627 3.1:-10780198 MS.gene90413:CDS
TCACTATATCTCTGATAGCT+AGG 0.520516 3.1:+10779051 None:intergenic
CAAGAGAAAGGATGACATAA+GGG 0.522273 3.1:+10779021 None:intergenic
CCTTAGATATATGGACTCCT+AGG 0.529324 3.1:+10780366 None:intergenic
GTCGATTCATTGGTCAACTT+GGG 0.529688 3.1:-10780201 MS.gene90413:CDS
GACAATACACTTGTGAAAGA+TGG 0.535420 3.1:-10778290 MS.gene90413:CDS
TGGATCATCAGAGCCAAAAT+GGG 0.539189 3.1:-10781197 MS.gene90413:CDS
TAAGAGGAGGGATGTTCTCA+GGG 0.542262 3.1:+10778822 None:intergenic
TGGATGAAGTTGTTCTTGCG+TGG 0.558865 3.1:+10779889 None:intergenic
TCACCTGGTGACCAAGAGAA+AGG 0.560168 3.1:+10779009 None:intergenic
GAATAATTTCTCTTGAAGAA+GGG 0.562106 3.1:-10778268 MS.gene90413:CDS
CAGTGCAAAAGAGATCATAA+AGG 0.562906 3.1:+10781474 None:intergenic
GGATGAAGTTGTTCTTGCGT+GGG 0.571202 3.1:+10779890 None:intergenic
GATCACTAGGTCCACAGGAA+AGG 0.571277 3.1:-10781267 MS.gene90413:intron
AACAAGTTCTGTGCTGATTG+TGG 0.576035 3.1:-10781217 MS.gene90413:CDS
CTTCCGATCACTAGGTCCAC+AGG 0.578366 3.1:-10781272 MS.gene90413:intron
ATAATGGAGTCAATGCAGCT+TGG 0.580263 3.1:-10778332 MS.gene90413:CDS
AAAACCGAATTCTTCCATTG+AGG 0.580396 3.1:-10780118 MS.gene90413:CDS
TGTCACTGAATCTAGATGAA+TGG 0.584411 3.1:-10780236 MS.gene90413:CDS
GCTATCGTTTCGAAACAGCT+GGG 0.585756 3.1:-10779787 MS.gene90413:CDS
TGGATTGATTAAGGTTAATG+TGG 0.585859 3.1:-10779087 MS.gene90413:CDS
TTGTGGAGGATTGTAGCTTG+AGG 0.590164 3.1:+10779854 None:intergenic
TACAAAGAAGAGTAACTCGT+TGG 0.593650 3.1:-10779739 MS.gene90413:intron
TCTGAAATCAATAGTATACC+AGG 0.593876 3.1:-10783234 MS.gene90413:intron
GAAGTTGTTCTTGCGTGGGA+TGG 0.594112 3.1:+10779894 None:intergenic
TCTGGTATACATAGAAGCCT+AGG 0.599149 3.1:-10780383 MS.gene90413:CDS
AGATTGTCTAACCTTTCCTG+TGG 0.600164 3.1:+10781256 None:intergenic
CTCAAAGTCAAAGAGAGCGA+TGG 0.600889 3.1:-10781433 MS.gene90413:CDS
GGGACAAATCAAATTCTCCT+CGG 0.602338 3.1:+10779923 None:intergenic
ACAATCTGATGCGTCAAGCA+GGG 0.621759 3.1:-10781240 MS.gene90413:CDS
CTTGGAAAATGGGTAGCAAG+TGG 0.649585 3.1:-10778314 MS.gene90413:CDS
AGGCTACAAAATGTTGAGAG+AGG 0.650552 3.1:-10778221 MS.gene90413:CDS
CTATCGTTTCGAAACAGCTG+GGG 0.668346 3.1:-10779786 MS.gene90413:CDS
TGAGACAGGAAATCTCATTG+AGG 0.699747 3.1:-10778241 MS.gene90413:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTATCAAAACTAAAT+TGG + chr3.1:10780532-10780551 None:intergenic 10.0%
!!! TTTGAATTTTAAGTTAATTA+GGG - chr3.1:10779063-10779082 MS.gene90413:CDS 10.0%
!!! TTTTGAATTTTAAGTTAATT+AGG - chr3.1:10779062-10779081 MS.gene90413:CDS 10.0%
!! AAACAAAAAATATATACTAC+AGG - chr3.1:10782058-10782077 MS.gene90413:intron 15.0%
!! AACAAAAAATATATACTACA+GGG - chr3.1:10782059-10782078 MS.gene90413:intron 15.0%
!! GATAAATGTAACAATTAAAA+GGG + chr3.1:10780047-10780066 None:intergenic 15.0%
!! TGATAAATGTAACAATTAAA+AGG + chr3.1:10780048-10780067 None:intergenic 15.0%
!!! TCTTTTTAATTTTATTATCC+AGG - chr3.1:10781459-10781478 MS.gene90413:CDS 15.0%
!!! TTTTAAATTATTATCTGTGT+CGG + chr3.1:10778439-10778458 None:intergenic 15.0%
!! AAAAGAAAAGTGAAAAACAA+TGG + chr3.1:10781445-10781464 None:intergenic 20.0%
!! AAAATAAAAAAATTTGTCCG+AGG + chr3.1:10780843-10780862 None:intergenic 20.0%
!! AAATATACCATAACTTCATA+AGG - chr3.1:10782115-10782134 MS.gene90413:intron 20.0%
!! AAATTAAACATGATCTATGA+GGG - chr3.1:10779319-10779338 MS.gene90413:intron 20.0%
!! AAATTAAATGTCTCAATTGT+AGG - chr3.1:10779924-10779943 MS.gene90413:CDS 20.0%
!! AACTATCCTATTAATCTATA+AGG + chr3.1:10779116-10779135 None:intergenic 20.0%
!! AATAGAACAAAAAAATTGCA+GGG + chr3.1:10781857-10781876 None:intergenic 20.0%
!! ACAATAAATTATCTGTTATC+AGG - chr3.1:10779354-10779373 MS.gene90413:intron 20.0%
!! ATTCATATTTATCTTGAGAT+AGG - chr3.1:10781416-10781435 MS.gene90413:intron 20.0%
!! GACTAAAACAAAATGTTAAA+AGG - chr3.1:10782137-10782156 MS.gene90413:intron 20.0%
!! TAATAGAACAAAAAAATTGC+AGG + chr3.1:10781858-10781877 None:intergenic 20.0%
!! TACAAATGCTTAAAAACAAA+CGG + chr3.1:10779761-10779780 None:intergenic 20.0%
!! TTCAGTGTAATTATATTTGT+CGG + chr3.1:10778943-10778962 None:intergenic 20.0%
!!! AATTTTTGTTCTGAATTTTG+AGG - chr3.1:10779154-10779173 MS.gene90413:intron 20.0%
!!! ATTCAACTTACTATTTTAAG+AGG + chr3.1:10782633-10782652 None:intergenic 20.0%
!!! ATTTTTGTTCTGAATTTTGA+GGG - chr3.1:10779155-10779174 MS.gene90413:intron 20.0%
!!! TAATTTGTTTATCCAAACAT+GGG + chr3.1:10780574-10780593 None:intergenic 20.0%
!!! TCCATTTTCTTAAATATTAC+TGG + chr3.1:10779558-10779577 None:intergenic 20.0%
!!! TTAATTTGTTTATCCAAACA+TGG + chr3.1:10780575-10780594 None:intergenic 20.0%
!!! TTTTGAGTTTCTAACATATA+GGG + chr3.1:10782040-10782059 None:intergenic 20.0%
!!! TTTTTGAGTTTCTAACATAT+AGG + chr3.1:10782041-10782060 None:intergenic 20.0%
! AAACAACTAGAAATCGTATT+GGG - chr3.1:10781627-10781646 MS.gene90413:intron 25.0%
! ACAGATAATTTATTGTAGAC+AGG + chr3.1:10779350-10779369 None:intergenic 25.0%
! ACATAATTCAGTGTAATCAT+AGG - chr3.1:10778464-10778483 MS.gene90413:intron 25.0%
! ACATGATTTGACATGATTAT+AGG - chr3.1:10781174-10781193 MS.gene90413:intron 25.0%
! AGAACAATTTAAATCCTGTT+TGG - chr3.1:10782568-10782587 MS.gene90413:intron 25.0%
! ATAGACTAAAGCGAAAAAAT+AGG + chr3.1:10781886-10781905 None:intergenic 25.0%
! ATCAAATAACCAACATTATC+CGG - chr3.1:10780064-10780083 MS.gene90413:intron 25.0%
! ATTAAGGTTAATGTGGTTAA+AGG - chr3.1:10782356-10782375 MS.gene90413:intron 25.0%
! ATTCATTACATCACTTTGAT+GGG + chr3.1:10778268-10778287 None:intergenic 25.0%
! CATCATTTGAAAAATAAGCT+TGG - chr3.1:10782674-10782693 MS.gene90413:intron 25.0%
! CTAAAGATGGATATATTACT+GGG + chr3.1:10781818-10781837 None:intergenic 25.0%
! CTATGAGAAATCATCAATAA+TGG - chr3.1:10783088-10783107 MS.gene90413:intron 25.0%
! GAAATTAAACATGATCTATG+AGG - chr3.1:10779318-10779337 MS.gene90413:intron 25.0%
! GAATAATTTCTCTTGAAGAA+GGG - chr3.1:10783168-10783187 MS.gene90413:intron 25.0%
! GCCAGTAATATTTAAGAAAA+TGG - chr3.1:10779554-10779573 MS.gene90413:intron 25.0%
! TAGACTAAAGCGAAAAAATA+GGG + chr3.1:10781885-10781904 None:intergenic 25.0%
! TGAGTTCCTTATAGATTAAT+AGG - chr3.1:10779107-10779126 MS.gene90413:CDS 25.0%
! TTGAAAAATAAGCTTGGAAT+TGG - chr3.1:10782680-10782699 MS.gene90413:intron 25.0%
!! AATTTGTTTATCCAAACATG+GGG + chr3.1:10780573-10780592 None:intergenic 25.0%
!! ACTTTGAGAATTTAAACTTG+AGG - chr3.1:10779709-10779728 MS.gene90413:intron 25.0%
!! ATTCAAAAACGACGATTTTA+TGG - chr3.1:10783019-10783038 MS.gene90413:intron 25.0%
!! CATTATTGATGATTTCTCAT+AGG + chr3.1:10783090-10783109 None:intergenic 25.0%
!! GATTTTATTAGGTAACTAAC+TGG - chr3.1:10781349-10781368 MS.gene90413:intron 25.0%
!! TGACTTTGAGAATTTAAACT+TGG + chr3.1:10779726-10779707 None:intergenic 25.0%
!! TTCAAAAACGACGATTTTAT+GGG - chr3.1:10783020-10783039 MS.gene90413:intron 25.0%
!! TTTAATTTCTTTCCTTGAGA+AGG + chr3.1:10779307-10779326 None:intergenic 25.0%
!! TTTTAGTCCTTATGAAGTTA+TGG + chr3.1:10782125-10782144 None:intergenic 25.0%
!!! AACTCGACTTTTTTTTCATA+AGG + chr3.1:10779738-10779757 None:intergenic 25.0%
!!! AACTTACTATTTTAAGAGGA+GGG + chr3.1:10782629-10782648 None:intergenic 25.0%
!!! TCATAACGTTTTTTTTCTTG+TGG + chr3.1:10781602-10781621 None:intergenic 25.0%
!!! TGAATTTGTTGGATTGATTA+AGG - chr3.1:10782340-10782359 MS.gene90413:intron 25.0%
!!! TTGTTTGAAAAGCATTATCT+TGG - chr3.1:10780321-10780340 MS.gene90413:intron 25.0%
!!! TTTGGTTTTTTTATGTAGCT+TGG + chr3.1:10781301-10781320 None:intergenic 25.0%
!!! TTTTTTCAGATAAGTGCTTA+TGG - chr3.1:10780665-10780684 MS.gene90413:intron 25.0%
AAACTATACAAATCATGCTG+CGG + chr3.1:10780488-10780507 None:intergenic 30.0%
AAATGATGTCTCACAGAAAA+TGG + chr3.1:10782662-10782681 None:intergenic 30.0%
AAGGAACAATAAGATTTGTG+TGG + chr3.1:10780378-10780397 None:intergenic 30.0%
AAGTTCCAAATGAATTCTAG+AGG + chr3.1:10782760-10782779 None:intergenic 30.0%
AATTAGGGATGTTACTACAA+TGG - chr3.1:10779078-10779097 MS.gene90413:CDS 30.0%
ACTTATCATAATGCTTGCAA+AGG - chr3.1:10782476-10782495 MS.gene90413:intron 30.0%
AGTGTAAGCTCAAAGATTAA+GGG + chr3.1:10780133-10780152 None:intergenic 30.0%
ATAGAAAGTTTCATGTCTCA+AGG + chr3.1:10780904-10780923 None:intergenic 30.0%
CAAACAACTAGAAATCGTAT+TGG - chr3.1:10781626-10781645 MS.gene90413:intron 30.0%
CATCAAAGTGATGTAATGAA+TGG - chr3.1:10778267-10778286 MS.gene90413:CDS 30.0%
CATGTTTAACCAAAACAAAG+AGG + chr3.1:10778754-10778773 None:intergenic 30.0%
CATTCATTACATCACTTTGA+TGG + chr3.1:10778269-10778288 None:intergenic 30.0%
CCAGTAATATATCCATCTTT+AGG - chr3.1:10781816-10781835 MS.gene90413:intron 30.0%
CCTAAAGATGGATATATTAC+TGG + chr3.1:10781819-10781838 None:intergenic 30.0%
CTTCAAATTAAAGGTTTGTC+AGG + chr3.1:10779618-10779637 None:intergenic 30.0%
GAAACAATAAAAGAGACAGA+TGG + chr3.1:10779668-10779687 None:intergenic 30.0%
GAACAACAAGAATAAGTCAT+TGG - chr3.1:10778300-10778319 MS.gene90413:CDS 30.0%
GCTTTAGTCTATGTAACATT+TGG - chr3.1:10781894-10781913 MS.gene90413:intron 30.0%
GGAATAATTTCTCTTGAAGA+AGG - chr3.1:10783167-10783186 MS.gene90413:intron 30.0%
GTCAGTGTAATTATATGAGT+CGG + chr3.1:10778914-10778933 None:intergenic 30.0%
GTTTATGATAAACCAATCCA+TGG - chr3.1:10778773-10778792 MS.gene90413:intron 30.0%
TAGTGTAAGCTCAAAGATTA+AGG + chr3.1:10780134-10780153 None:intergenic 30.0%
TCATATACAATCTGCATGTA+AGG + chr3.1:10782990-10783009 None:intergenic 30.0%
TCCCTATATGTTTGAAAACT+CGG - chr3.1:10781932-10781951 MS.gene90413:intron 30.0%
TCTAGCTACAAGTAAGATTA+AGG + chr3.1:10782723-10782742 None:intergenic 30.0%
TCTCAGTTATAACTTAGACA+AGG + chr3.1:10780397-10780416 None:intergenic 30.0%
TCTTACTTGTAGCTAGAATT+CGG - chr3.1:10782726-10782745 MS.gene90413:intron 30.0%
TGGATTGATTAAGGTTAATG+TGG - chr3.1:10782349-10782368 MS.gene90413:intron 30.0%
TTATCAAACATGAAATCCAG+AGG + chr3.1:10782954-10782973 None:intergenic 30.0%
TTATTATCTGATCTTGCAGT+CGG - chr3.1:10782527-10782546 MS.gene90413:intron 30.0%
TTCATTACATCACTTTGATG+GGG + chr3.1:10778267-10778286 None:intergenic 30.0%
TTCTCCCTATTTACTGTTAT+AGG - chr3.1:10782307-10782326 MS.gene90413:intron 30.0%
TTGACTTATTTAAGCTGATC+TGG + chr3.1:10780758-10780777 None:intergenic 30.0%
TTTCTCAAGACATCTTGTAT+TGG - chr3.1:10779383-10779402 MS.gene90413:intron 30.0%
! ACCGAGTTTTCAAACATATA+GGG + chr3.1:10781936-10781955 None:intergenic 30.0%
! AGGGATAAAGGTATATTACA+GGG - chr3.1:10782179-10782198 MS.gene90413:intron 30.0%
! AGGTATAGAAAGTTTTTACC+TGG + chr3.1:10778223-10778242 None:intergenic 30.0%
! AGTTGAAATTGATAGTCCTA+AGG + chr3.1:10780431-10780450 None:intergenic 30.0%
! ATATGAGCTGCAACAATTTT+TGG - chr3.1:10781487-10781506 MS.gene90413:CDS 30.0%
! ATCACAAGAAGTTTAGAATG+AGG - chr3.1:10780873-10780892 MS.gene90413:intron 30.0%
! TACCGAGTTTTCAAACATAT+AGG + chr3.1:10781937-10781956 None:intergenic 30.0%
! TAGGGATAAAGGTATATTAC+AGG - chr3.1:10782178-10782197 MS.gene90413:intron 30.0%
! TCTGAAATCAATAGTATACC+AGG - chr3.1:10778202-10778221 MS.gene90413:CDS 30.0%
! TTTTGCCTCTGGATTTAAAT+GGG + chr3.1:10782017-10782036 None:intergenic 30.0%
!! ATCTTTAGGTTTTGTCGAAA+CGG - chr3.1:10781830-10781849 MS.gene90413:intron 30.0%
!! CAACTTACTATTTTAAGAGG+AGG + chr3.1:10782630-10782649 None:intergenic 30.0%
!! CATAGGTATTGAATTGTTGT+CGG - chr3.1:10778481-10778500 MS.gene90413:intron 30.0%
!!! TAACGTTTTTTTTCTTGTGG+AGG + chr3.1:10781599-10781618 None:intergenic 30.0%
!!! TTTTGCCTCTAGAATTCATT+TGG - chr3.1:10782752-10782771 MS.gene90413:intron 30.0%
AAAACCGAATTCTTCCATTG+AGG - chr3.1:10781318-10781337 MS.gene90413:intron 35.0%
AACATAAACACTTGTGAGAC+CGG + chr3.1:10780086-10780105 None:intergenic 35.0%
AATGTCTCAATTGTAGGATC+AGG - chr3.1:10779930-10779949 MS.gene90413:CDS 35.0%
AATTGAAGACGTGTATGTGT+TGG - chr3.1:10778358-10778377 MS.gene90413:CDS 35.0%
ACCTGCCTATAACAGTAAAT+AGG + chr3.1:10782315-10782334 None:intergenic 35.0%
ACGAACGTACCTTAGATATA+TGG + chr3.1:10781082-10781101 None:intergenic 35.0%
ACGTTTAATTACCCCATGTT+TGG - chr3.1:10780559-10780578 MS.gene90413:intron 35.0%
AGCTTCTGATGTTTCTTGTA+TGG - chr3.1:10779467-10779486 MS.gene90413:intron 35.0%
ATGTTTGAAAACTCGGTATC+CGG - chr3.1:10781939-10781958 MS.gene90413:intron 35.0%
ATTAGGCTTTCATTCCAAAC+AGG + chr3.1:10782585-10782604 None:intergenic 35.0%
ATTTCTTTCCTTGAGAAGGT+TGG + chr3.1:10779303-10779322 None:intergenic 35.0%
CAAGAGAAAGGATGACATAA+GGG + chr3.1:10782418-10782437 None:intergenic 35.0%
CACAAACACTCTTTGGATTA+GGG + chr3.1:10778542-10778561 None:intergenic 35.0%
CAGTGCAAAAGAGATCATAA+AGG + chr3.1:10779965-10779984 None:intergenic 35.0%
CATGACTTAAAAGAAGAGCA+TGG - chr3.1:10782921-10782940 MS.gene90413:intron 35.0%
CCTGCCTATAACAGTAAATA+GGG + chr3.1:10782314-10782333 None:intergenic 35.0%
CTGAGAATCATCTTGAGAAA+TGG - chr3.1:10782209-10782228 MS.gene90413:intron 35.0%
GACAATACACTTGTGAAAGA+TGG - chr3.1:10783146-10783165 MS.gene90413:intron 35.0%
GTTTAACCAAAACAAAGAGG+AGG + chr3.1:10778751-10778770 None:intergenic 35.0%
GTTTATCTCTCCTACTTGTA+AGG - chr3.1:10780799-10780818 MS.gene90413:intron 35.0%
GTTTCGACAAAACCTAAAGA+TGG + chr3.1:10781831-10781850 None:intergenic 35.0%
TACAAAGAAGAGTAACTCGT+TGG - chr3.1:10781697-10781716 MS.gene90413:intron 35.0%
TATGAAGCACAAACACTCTT+TGG + chr3.1:10778549-10778568 None:intergenic 35.0%
TCAAAGATTAAGGGTCTGTT+TGG + chr3.1:10780124-10780143 None:intergenic 35.0%
TCACTATATCTCTGATAGCT+AGG + chr3.1:10782388-10782407 None:intergenic 35.0%
TCATGACAAGCTATGAAACA+CGG - chr3.1:10778842-10778861 MS.gene90413:CDS 35.0%
TGTCACTGAATCTAGATGAA+TGG - chr3.1:10781200-10781219 MS.gene90413:CDS 35.0%
TTGCATTAGTCACTACCATA+TGG + chr3.1:10779202-10779221 None:intergenic 35.0%
TTTACTGTTATAGGCAGGTA+TGG - chr3.1:10782316-10782335 MS.gene90413:intron 35.0%
TTTATTTGCATCAAGTGCTC+TGG - chr3.1:10781035-10781054 MS.gene90413:intron 35.0%
TTTCTTTCCTTGAGAAGGTT+GGG + chr3.1:10779302-10779321 None:intergenic 35.0%
TTTGCCTCTGGATTTAAATG+GGG + chr3.1:10782016-10782035 None:intergenic 35.0%
TTTGTCGCAATTTCACAAGT+CGG - chr3.1:10779868-10779887 MS.gene90413:CDS 35.0%
! ACAAACACTCTTTGGATTAG+GGG + chr3.1:10778541-10778560 None:intergenic 35.0%
! ACGTCTTCAATTTGAAGTGT+TGG + chr3.1:10778350-10778369 None:intergenic 35.0%
! CAAGAAACATCAGAAGCTTT+TGG + chr3.1:10779465-10779484 None:intergenic 35.0%
! CTCAAGATGATTCTCAGTTT+TGG + chr3.1:10782206-10782225 None:intergenic 35.0%
! GCACTGTCACTTCAAATTAA+AGG + chr3.1:10779627-10779646 None:intergenic 35.0%
! GTGAATACTTACACCCATTT+TGG + chr3.1:10780255-10780274 None:intergenic 35.0%
! GTTTTGCCTCTGGATTTAAA+TGG + chr3.1:10782018-10782037 None:intergenic 35.0%
! TCAATGGAAGAATTCGGTTT+TGG + chr3.1:10781319-10781338 None:intergenic 35.0%
! TTGAATCAAGTGCGTGTTTT+TGG + chr3.1:10782889-10782908 None:intergenic 35.0%
!! CATGCTCTTCTTTTAAGTCA+TGG + chr3.1:10782923-10782942 None:intergenic 35.0%
!! TGAAGTGTTGGTGTTAGATA+CGG + chr3.1:10778338-10778357 None:intergenic 35.0%
!!! TAAGCTTGGAATTGGTCTTT+TGG - chr3.1:10782688-10782707 MS.gene90413:intron 35.0%
AACATCAGGTCTTCAAGTCT+TGG - chr3.1:10781008-10781027 MS.gene90413:intron 40.0%
AGATTGTCTAACCTTTCCTG+TGG + chr3.1:10780183-10780202 None:intergenic 40.0%
AGGAGAGATAAACCACACTA+AGG + chr3.1:10780792-10780811 None:intergenic 40.0%
AGGCTACAAAATGTTGAGAG+AGG - chr3.1:10783215-10783234 MS.gene90413:intron 40.0%
AGTCAATGCAGCTTGGAAAA+TGG - chr3.1:10783111-10783130 MS.gene90413:intron 40.0%
AGTGACAGTGCTACATACAA+AGG - chr3.1:10779636-10779655 MS.gene90413:intron 40.0%
ATCTCTTCTCAACCATGGAT+TGG + chr3.1:10778788-10778807 None:intergenic 40.0%
ATTACATCACTTTGATGGGG+AGG + chr3.1:10778264-10778283 None:intergenic 40.0%
CCAAGAGAAAGGATGACATA+AGG + chr3.1:10782419-10782438 None:intergenic 40.0%
CCCTATTTACTGTTATAGGC+AGG - chr3.1:10782311-10782330 MS.gene90413:intron 40.0%
CCTAGGAGTCCATATATCTA+AGG - chr3.1:10781070-10781089 MS.gene90413:intron 40.0%
CCTTAGATATATGGACTCCT+AGG + chr3.1:10781073-10781092 None:intergenic 40.0%
CCTTATGTCATCCTTTCTCT+TGG - chr3.1:10782416-10782435 MS.gene90413:intron 40.0%
CTGAATATAACCACCTGTGT+TGG + chr3.1:10778597-10778616 None:intergenic 40.0%
GAGTTTCACTTGCAAGAGAA+AGG - chr3.1:10779785-10779804 MS.gene90413:CDS 40.0%
GATATATGAGACACCAACAC+AGG - chr3.1:10778581-10778600 MS.gene90413:intron 40.0%
GCACAAACACTCTTTGGATT+AGG + chr3.1:10778543-10778562 None:intergenic 40.0%
GCAGGTATGGTTGAATTTGT+TGG - chr3.1:10782329-10782348 MS.gene90413:intron 40.0%
GGAAGAAAGAATGAGGGAAA+AGG + chr3.1:10778243-10778262 None:intergenic 40.0%
GGAGAGATAAACCACACTAA+GGG + chr3.1:10780791-10780810 None:intergenic 40.0%
GGGACAAATCAAATTCTCCT+CGG + chr3.1:10781516-10781535 None:intergenic 40.0%
GGTGTAGTATCTATGAAGCA+CGG - chr3.1:10778379-10778398 MS.gene90413:CDS 40.0%
GTCAATGCAGCTTGGAAAAT+GGG - chr3.1:10783112-10783131 MS.gene90413:intron 40.0%
GTGACAGTGCTACATACAAA+GGG - chr3.1:10779637-10779656 MS.gene90413:intron 40.0%
GTGTATAATGGTATCTCGAC+AGG - chr3.1:10779892-10779911 MS.gene90413:CDS 40.0%
TAACCAAAACAAAGAGGAGG+AGG + chr3.1:10778748-10778767 None:intergenic 40.0%
TACTTGTCGTCTATGAACCA+CGG + chr3.1:10779041-10779060 None:intergenic 40.0%
TATGAAACACGGATACTCCT+CGG - chr3.1:10778853-10778872 MS.gene90413:CDS 40.0%
TCTGGTATACATAGAAGCCT+AGG - chr3.1:10781053-10781072 MS.gene90413:intron 40.0%
TGAGAAGCTAAAGATGCCTT+AGG - chr3.1:10780412-10780431 MS.gene90413:CDS 40.0%
TGAGACAGGAAATCTCATTG+AGG - chr3.1:10783195-10783214 MS.gene90413:intron 40.0%
TGGATCATCAGAGCCAAAAT+GGG - chr3.1:10780239-10780258 MS.gene90413:CDS 40.0%
TTAGCACTTGTGAGAGCTTA+TGG + chr3.1:10780733-10780752 None:intergenic 40.0%
TTAGTCACTACCATATGGTG+CGG + chr3.1:10779197-10779216 None:intergenic 40.0%
TTGACATGAAGAAACTCACC+TGG + chr3.1:10782445-10782464 None:intergenic 40.0%
! AACATATAGGGTTTTGCCTC+TGG + chr3.1:10782028-10782047 None:intergenic 40.0%
! AGACGAACAAGTCGATTCAT+TGG - chr3.1:10781225-10781244 MS.gene90413:CDS 40.0%
! AGTCGATTCATTGGTCAACT+TGG - chr3.1:10781234-10781253 MS.gene90413:CDS 40.0%
! ATAATGGAGTCAATGCAGCT+TGG - chr3.1:10783104-10783123 MS.gene90413:intron 40.0%
! GCTTTTGCTGCTGATACTAA+TGG + chr3.1:10783068-10783087 None:intergenic 40.0%
! GTCGATTCATTGGTCAACTT+GGG - chr3.1:10781235-10781254 MS.gene90413:CDS 40.0%
! TTGCAGCTCATATTTTCTCC+TGG + chr3.1:10781480-10781499 None:intergenic 40.0%
!! AACAAGTTCTGTGCTGATTG+TGG - chr3.1:10780219-10780238 MS.gene90413:CDS 40.0%
!! ACTAAGAGCACCTTACAAGT+AGG + chr3.1:10780812-10780831 None:intergenic 40.0%
!! GATTGGTCTCTCGAATTAGT+CGG + chr3.1:10781973-10781992 None:intergenic 40.0%
!! GCAACAATTTTTGGATTCCG+AGG - chr3.1:10781496-10781515 MS.gene90413:intron 40.0%
!! TCTCAGGGATTGAAAGCATT+AGG + chr3.1:10782602-10782621 None:intergenic 40.0%
!!! AGGAGCGCTCTGATTTTATT+AGG - chr3.1:10781338-10781357 MS.gene90413:intron 40.0%
!!! AGTGCGTGTTTTTGGTTTTG+TGG + chr3.1:10782881-10782900 None:intergenic 40.0%
AACCACACTAAGGGACTGTT+TGG + chr3.1:10780782-10780801 None:intergenic 45.0%
ACAATCTGATGCGTCAAGCA+GGG - chr3.1:10780196-10780215 MS.gene90413:CDS 45.0%
ACAGTGCTACATACAAAGGG+AGG - chr3.1:10779640-10779659 MS.gene90413:intron 45.0%
AGAGAGCGATGGATGTTATC+TGG - chr3.1:10780014-10780033 MS.gene90413:intron 45.0%
ATACGACACGAACACTGACA+TGG + chr3.1:10778999-10779018 None:intergenic 45.0%
ATATGAGACACCAACACAGG+TGG - chr3.1:10778584-10778603 MS.gene90413:intron 45.0%
ATCACTTCCCAACCTTCTCA+AGG - chr3.1:10779292-10779311 MS.gene90413:intron 45.0%
ATCCAAACAGTCCCTTAGTG+TGG - chr3.1:10780777-10780796 MS.gene90413:intron 45.0%
ATGGGGAGGAAGAAAGAATG+AGG + chr3.1:10778250-10778269 None:intergenic 45.0%
CGCTCCTCAATGGAAGAATT+CGG + chr3.1:10781325-10781344 None:intergenic 45.0%
CTATCGTTTCGAAACAGCTG+GGG - chr3.1:10781650-10781669 MS.gene90413:intron 45.0%
CTCAAAGTCAAAGAGAGCGA+TGG - chr3.1:10780003-10780022 MS.gene90413:intron 45.0%
CTTGCGTGGGATGGTATAAA+GGG + chr3.1:10781536-10781555 None:intergenic 45.0%
CTTGGAAAATGGGTAGCAAG+TGG - chr3.1:10783122-10783141 MS.gene90413:intron 45.0%
CTTGTGAGACCGGATAATGT+TGG + chr3.1:10780076-10780095 None:intergenic 45.0%
GATTCATTGGTCAACTTGGG+TGG - chr3.1:10781238-10781257 MS.gene90413:CDS 45.0%
GCAACATCTCTTCTCAACCA+TGG + chr3.1:10778793-10778812 None:intergenic 45.0%
GCTATCGTTTCGAAACAGCT+GGG - chr3.1:10781649-10781668 MS.gene90413:intron 45.0%
GCTCTTAGTAACACTGTCCT+CGG - chr3.1:10780823-10780842 MS.gene90413:intron 45.0%
GGATGAAGTTGTTCTTGCGT+GGG + chr3.1:10781549-10781568 None:intergenic 45.0%
GTGGATCATCAGAGCCAAAA+TGG - chr3.1:10780238-10780257 MS.gene90413:CDS 45.0%
TAAGAGGAGGGATGTTCTCA+GGG + chr3.1:10782617-10782636 None:intergenic 45.0%
TACGACACGAACACTGACAT+GGG + chr3.1:10778998-10779017 None:intergenic 45.0%
TAGTCACTACCATATGGTGC+GGG + chr3.1:10779196-10779215 None:intergenic 45.0%
TATCTATGAAGCACGGACAC+CGG - chr3.1:10778386-10778405 MS.gene90413:CDS 45.0%
TCACAAGTCGGCGTGTATAA+TGG - chr3.1:10779880-10779899 MS.gene90413:CDS 45.0%
TCGTCTATGAACCACGGATA+CGG + chr3.1:10779035-10779054 None:intergenic 45.0%
TCTGCTTACTTCCGATCACT+AGG - chr3.1:10780156-10780175 MS.gene90413:CDS 45.0%
TCTTGCGTGGGATGGTATAA+AGG + chr3.1:10781537-10781556 None:intergenic 45.0%
TGAAGAAGGGAAAGTGAGAC+AGG - chr3.1:10783181-10783200 MS.gene90413:intron 45.0%
TGGATGAAGTTGTTCTTGCG+TGG + chr3.1:10781550-10781569 None:intergenic 45.0%
TGGGGAGGAAGAAAGAATGA+GGG + chr3.1:10778249-10778268 None:intergenic 45.0%
TTAAGAGGAGGGATGTTCTC+AGG + chr3.1:10782618-10782637 None:intergenic 45.0%
TTCCAGTATCAGAAACGCGT+CGG + chr3.1:10778516-10778535 None:intergenic 45.0%
TTGTGGAGGATTGTAGCTTG+AGG + chr3.1:10781585-10781604 None:intergenic 45.0%
TTTCCTGTGGACCTAGTGAT+CGG + chr3.1:10780170-10780189 None:intergenic 45.0%
! AAAATCAGAGCGCTCCTCAA+TGG + chr3.1:10781335-10781354 None:intergenic 45.0%
!! TGAAGCACTGATACAGACAC+TGG - chr3.1:10779510-10779529 MS.gene90413:intron 45.0%
!!! AGCGCGTTGTTTTGAACATC+AGG - chr3.1:10780994-10781013 MS.gene90413:intron 45.0%
AAAACTCGGTATCCGGCTCA+AGG - chr3.1:10781946-10781965 MS.gene90413:intron 50.0%
AAACAAAGAGGAGGAGGAGG+AGG + chr3.1:10778742-10778761 None:intergenic 50.0%
AACAATAGCCCCGCACCATA+TGG - chr3.1:10779184-10779203 MS.gene90413:intron 50.0%
AATCTGACTGTCCTCTAGCG+GGG - chr3.1:10781989-10782008 MS.gene90413:intron 50.0%
ACACGGATACTCCTCGGATT+AGG - chr3.1:10778859-10778878 MS.gene90413:CDS 50.0%
ACTGAGACACTCCTAATCCG+AGG + chr3.1:10778873-10778892 None:intergenic 50.0%
AGAGCATGGTCTTCATCCTC+TGG - chr3.1:10782935-10782954 MS.gene90413:intron 50.0%
AGTCACTACCATATGGTGCG+GGG + chr3.1:10779195-10779214 None:intergenic 50.0%
ATGAACCACGGATACGGACA+TGG + chr3.1:10779029-10779048 None:intergenic 50.0%
CAATCTGACTGTCCTCTAGC+GGG - chr3.1:10781988-10782007 MS.gene90413:intron 50.0%
CATCCTTTCTCTTGGTCACC+AGG - chr3.1:10782424-10782443 MS.gene90413:intron 50.0%
CCAAAACAAAGAGGAGGAGG+AGG + chr3.1:10778745-10778764 None:intergenic 50.0%
CCAATCTGACTGTCCTCTAG+CGG - chr3.1:10781987-10782006 MS.gene90413:intron 50.0%
GAAGTTGTTCTTGCGTGGGA+TGG + chr3.1:10781545-10781564 None:intergenic 50.0%
GAATTAGTCGGTCCTTGAGC+CGG + chr3.1:10781961-10781980 None:intergenic 50.0%
GACAATCTGATGCGTCAAGC+AGG - chr3.1:10780195-10780214 MS.gene90413:CDS 50.0%
GATCACTAGGTCCACAGGAA+AGG - chr3.1:10780169-10780188 MS.gene90413:CDS 50.0%
GGCTATCGTTTCGAAACAGC+TGG - chr3.1:10781648-10781667 MS.gene90413:intron 50.0%
GTCAGTGTTCGTGTCGTATC+CGG - chr3.1:10779000-10779019 MS.gene90413:intron 50.0%
TCACCTGGTGACCAAGAGAA+AGG + chr3.1:10782430-10782449 None:intergenic 50.0%
!! CCTCCTCCTCCTCTTTGTTT+TGG - chr3.1:10778742-10778761 MS.gene90413:intron 50.0%
ACGGATACGGACATGGACAC+CGG + chr3.1:10779022-10779041 None:intergenic 55.0%
ATCTGACTGTCCTCTAGCGG+GGG - chr3.1:10781990-10782009 MS.gene90413:intron 55.0%
CACCGACGCGTTTCTGATAC+TGG - chr3.1:10778511-10778530 MS.gene90413:intron 55.0%
CCGCTAGAGGACAGTCAGAT+TGG + chr3.1:10781990-10782009 None:intergenic 55.0%
CTTCCGATCACTAGGTCCAC+AGG - chr3.1:10780164-10780183 MS.gene90413:CDS 55.0%
GCTTGAGGAACTGCTCTGAC+TGG + chr3.1:10781570-10781589 None:intergenic 55.0%
GGGGCCCCATTTAAATCCAG+AGG - chr3.1:10782009-10782028 MS.gene90413:intron 55.0%
! GTCGGTGTCTATGTCGTGTC+TGG + chr3.1:10778421-10778440 None:intergenic 55.0%
CAAAGAGGAGGAGGAGGAGG+AGG + chr3.1:10778739-10778758 None:intergenic 60.0%
GAGTCGGACACGACACGTGT+TGG + chr3.1:10778898-10778917 None:intergenic 60.0%
GGTGTCCATGTCCGTATCCG+TGG - chr3.1:10779021-10779040 MS.gene90413:CDS 60.0%
TCGTGTCTGGTGTCCGTGTC+CGG + chr3.1:10778408-10778427 None:intergenic 60.0%
TGAAGCACGGACACCGGACA+CGG - chr3.1:10778392-10778411 MS.gene90413:CDS 60.0%
TTAAATGGGGCCCCCGCTAG+AGG + chr3.1:10782003-10782022 None:intergenic 60.0%
AGAGGAGGAGGAGGAGGAGG+AGG + chr3.1:10778736-10778755 None:intergenic 65.0%
AGGAGGAGGAGGAGGAGGAG+GGG + chr3.1:10778731-10778750 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+GGG + chr3.1:10778732-10778751 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr3.1:10778730-10778749 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 10778178 10783280 10778178 ID=MS.gene90413
chr3.1 mRNA 10778178 10783280 10778178 ID=MS.gene90413.t1;Parent=MS.gene90413
chr3.1 exon 10783235 10783280 10783235 ID=MS.gene90413.t1.exon1;Parent=MS.gene90413.t1
chr3.1 CDS 10783235 10783280 10783235 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10781423 10781512 10781423 ID=MS.gene90413.t1.exon2;Parent=MS.gene90413.t1
chr3.1 CDS 10781423 10781512 10781423 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10781196 10781280 10781196 ID=MS.gene90413.t1.exon3;Parent=MS.gene90413.t1
chr3.1 CDS 10781196 10781280 10781196 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10780367 10780442 10780367 ID=MS.gene90413.t1.exon4;Parent=MS.gene90413.t1
chr3.1 CDS 10780367 10780442 10780367 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10780099 10780262 10780099 ID=MS.gene90413.t1.exon5;Parent=MS.gene90413.t1
chr3.1 CDS 10780099 10780262 10780099 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10779740 10779977 10779740 ID=MS.gene90413.t1.exon6;Parent=MS.gene90413.t1
chr3.1 CDS 10779740 10779977 10779740 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10779013 10779129 10779013 ID=MS.gene90413.t1.exon7;Parent=MS.gene90413.t1
chr3.1 CDS 10779013 10779129 10779013 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10778817 10778912 10778817 ID=MS.gene90413.t1.exon8;Parent=MS.gene90413.t1
chr3.1 CDS 10778817 10778912 10778817 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
chr3.1 exon 10778178 10778459 10778178 ID=MS.gene90413.t1.exon9;Parent=MS.gene90413.t1
chr3.1 CDS 10778178 10778459 10778178 ID=cds.MS.gene90413.t1;Parent=MS.gene90413.t1
Gene Sequence

>MS.gene90413

ATGGAGATGATACATCAAGAAAAATCTGAAATCAATAGTATACCAGGTAAAAACTTTCTATACCTTTTCCCTCATTCTTTCTTCCTCCCCATCAAAGTGATGTAATGAATGGTTGATATTATGAACAACAAGAATAAGTCATTGGAATTTGATAGAACCGTATCTAACACCAACACTTCAAATTGAAGACGTGTATGTGTTGGTGTAGTATCTATGAAGCACGGACACCGGACACGGACACCAGACACGACATAGACACCGACACAGATAATAATTTAAAAAAATGACATAATTCAGTGTAATCATAGGTATTGAATTGTTGTCGGTGTCAGACACCGACGCGTTTCTGATACTGGAACACCCCTAATCCAAAGAGTGTTTGTGCTTCATAGTGTAGTACACAGATATATGAGACACCAACACAGGTGGTTATATTCAGTCACTTCTATTTTTTTAAATTATTATCAGTGTCTGTGTTTTATTGTCAGTGTCATGTCTATATCAATGCTTCACATGATAGAATAGAACAGATTTATTCACATTTTTCTTTCCCCTCCTCCTCCTCCTCCTCCTCCTCTTTGTTTTGGTTAAACATGTTTATGATAAACCAATCCATGGTTGAGAAGAGATGTTGCAATTTGCTTGCTCTCAAGTAACTACAAATTCATGACAAGCTATGAAACACGGATACTCCTCGGATTAGGAGTGTCTCAGTGTCCAACACGTGTCGTGTCCGACTCATATAATTACACTGACACAACACCGACAAATATAATTACACTGAATTATGTGATTTTCTCAAATTATTAGCTGTGTTCCCATGTCAGTGTTCGTGTCGTATCCGGTGTCCATGTCCGTATCCGTGGTTCATAGACGACAAGTATTTTTGAATTTTAAGTTAATTAGGGATGTTACTACAATGGCACTATTGAGTTCCTTATAGATTAATAGGATAGTTTTTTTTAGTAAAATGTTAAATTTTTGTTCTGAATTTTGAGGGTGTATGAACAATAGCCCCGCACCATATGGTAGTGACTAATGCAACATCAATTATGAGTTATATTATCTTCACTGTCTTCAAATAAGTACAATAAACTAAGTTTATTTCTAAAACATCACTTCCCAACCTTCTCAAGGAAAGAAATTAAACATGATCTATGAGGGCTTCACCTGTCTACAATAAATTATCTGTTATCAGGTTCTCATTTCTCAAGACATCTTGTATTGGTTAATTGTATTAAAGAATTCAAAACAAAGAAACAAAATGTGATTACAAGAATGACTCCAAAAGCTTCTGATGTTTCTTGTATGGAATGAAAGTTTATTGTGTTATGAAGCACTGATACAGACACTGGACACGATATTGACACATACTTGCCAGTAATATTTAAGAAAATGGAACTAATTGAATGTAACTACATGTGTCGATGTCAGACACCTGACAAACCTTTAATTTGAAGTGACAGTGCTACATACAAAGGGAGGAACCATCTGTCTCTTTTATTGTTTCTGCTTTACTAGAATGACTTTGACTTTGAGAATTTAAACTTGAGGTTTCCTTATGAAAAAAAAGTCGAGTTCCGTTTGTTTTTAAGCATTTGTAAGTTGAGTTTCACTTGCAAGAGAAAGGAAATATTAGTGTCTGTGATTGTTGAAATTTGTAATGATAAAAGTAACTTCGAAGTGATGCTTTGTCGCAATTTCACAAGTCGGCGTGTATAATGGTATCTCGACAGGCTAACTATAAAATTAAATGTCTCAATTGTAGGATCAGGATCTTCTTGCCTTTATGATCTCTTTTGCACTGAAACACCAAGTTTAAATTCTCAAAGTCAAAGAGAGCGATGGATGTTATCTGGTATTTTTCCCTTTTAATTGTTACATTTATCAAATAACCAACATTATCCGGTCTCACAAGTGTTTATGTTAGTATATAAGTTAATCCAAACAGACCCTTAATCTTTGAGCTTACACTATTTCTGCTTACTTCCGATCACTAGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCAGGGAACAAGTTCTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTAAGTATTCACTTTATTTGTAAAGTAATTTGATCTATGTGCATTGCTAAGTGCTACATTGTTTGAAAAGCATTATCTTGGATCAAGAACTAGTTATTAATACTGTGTCTTTCCACACAAATCTTATTGTTCCTTGTCTAAGTTATAACTGAGAAGCTAAAGATGCCTTAGGACTATCAATTTCAACTTGCTTGTTATTTGCTTTCTATCTTTGTGAAGCAACCGCAGCATGATTTGTATAGTTTTATGTTTAAAATTACATGAATCCAATTTAGTTTTGATAAATTTTGTGTAATACGTTTAATTACCCCATGTTTGGATAAACAAATTAAAATTAAGCGCTTATAGCATAAACTTTATGTATAAGTTATTTCTGTATCAGAAGATAAAATGAAGTCAAACTTTTTTCAGATAAGTGCTTATGGACATAAGCTAAAAACAACTTTTGAACATTTCATAAATTGTTTCCATAAGCTCTCACAAGTGCTAATGCCAGATCAGCTTAAATAAGTCAATCCAAACAGTCCCTTAGTGTGGTTTATCTCTCCTACTTGTAAGGTGCTCTTAGTAACACTGTCCTCGGACAAATTTTTTTATTTTGTATTTCTAGATCACAAGAAGTTTAGAATGAGGAAGAACCTTGAGACATGAAACTTTCTATTCAGAATTAATTGACAATTTACTTTTCTCAGTAGATAATTAGTTCATATTATTTGCATTTGATTTTATTCAGCGCGTTGTTTTGAACATCAGGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACATAGAAGCCTAGGAGTCCATATATCTAAGGTACGTTCGTAGCATAATTTGTAAAACACATGTTATTTGACATTACATGCATTTACTTGCAAATTTTCTAATAGAAATGTTAACATGATTTGACATGATTATAGGTGCTGTCACTGAATCTAGATGAATGGACAGACGAACAAGTCGATTCATTGGTCAACTTGGGTGGAAATACATTAATCAATAAGAAGTATGAAGCTTGCATGCCAAGCTACATAAAAAAACCAAAACCGAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGTAACTAACTGGATGAAAAAGCGTCACGAGCACACAAACACACACGCACACAACAAATTCATATTTATCTTGAGATAGGATACCATTGTTTTTCACTTTTCTTTTTAATTTTATTATCCAGGAGAAAATATGAGCTGCAACAATTTTTGGATTCCGAGGAGAATTTGATTTGTCCCTTTATACCATCCCACGCAAGAACAACTTCATCCAGTCAGAGCAGTTCCTCAAGCTACAATCCTCCACAAGAAAAAAAACGTTATGATAAACAAACAACTAGAAATCGTATTGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAGTAAGAGTACAAAGAAGAGTAACTCGTTGGTAATGTTTCATTTCATTTCTTCTTTAAAGTTAGTTAATGCAATAAATAATGCTATCTATGTTGAGAATTCTGATAGACTTAAATATGTTTTGTGTCCCAGTAATATATCCATCTTTAGGTTTTGTCGAAACGGTCCCTGCAATTTTTTTGTTCTATTATAGTCCCTATTTTTTCGCTTTAGTCTATGTAACATTTGGTTTATGTTCTTTTAGTCCCTATATGTTTGAAAACTCGGTATCCGGCTCAAGGACCGACTAATTCGAGAGACCAATCTGACTGTCCTCTAGCGGGGGCCCCATTTAAATCCAGAGGCAAAACCCTATATGTTAGAAACTCAAAAACAAAAAATATATACTACAGGGACTAAAACAAAATATATAAAAAATTATAAAAAAAAATATACCATAACTTCATAAGGACTAAAACAAAATGTTAAAAGGACTGAGAGAGAAAAAAAATAGGGATAAAGGTATATTACAGGGACCAAAACTGAGAATCATCTTGAGAAATGGAACATTCATGAAAGTTTAAGCATGATAAGTATTGAAATATTACATTTTTCTTTGTTCTTGACTACTGAATATTGTTTCTCCCTATTTACTGTTATAGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTAACCTAGCTATCAGAGATATAGTGACTAGTGACCCTTATGTCATCCTTTCTCTTGGTCACCAGGTGAGTTTCTTCATGTCAAAACTACTTAATACTTATCATAATGCTTGCAAAGGAAAATGTAACATTAAATATGTAACATTTTTATTATCTGATCTTGCAGTCGGTGAAGACGCGTGTCATAAAGAACAATTTAAATCCTGTTTGGAATGAAAGCCTAATGCTTTCAATCCCTGAGAACATCCCTCCTCTTAAAATAGTAAGTTGAATTGTTCACCATTTTCTGTGAGACATCATTTGAAAAATAAGCTTGGAATTGGTCTTTTGGCAATTGATACCTTAATCTTACTTGTAGCTAGAATTCGGAGCTTTTGCCTCTAGAATTCATTTGGAACTTTGCATGAACGTATACAAACAATCGTCACTTTATATTCAACTCACTTTTAGCTTTAATCGATGTTACAAAATCATTTTATGCAAAGTCAATTTTTGTTACCACAAAACCAAAAACACGCACTTGATTCAATTATTTTATGTCCATGACTTAAAAGAAGAGCATGGTCTTCATCCTCTGGATTTCATGTTTGATAAGATTTGATATGATCCTTACATGCAGATTGTATATGACAAAGATTCATTCAAAAACGACGATTTTATGGGAGAAGCTGAAATAGACATTCAACCATTAGTATCAGCAGCAAAAGCCTATGAGAAATCATCAATAATGGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAATACACTTGTGAAAGATGGAATAATTTCTCTTGAAGAAGGGAAAGTGAGACAGGAAATCTCATTGAGGCTACAAAATGTTGAGAGAGGTGTTCTTGAAATTGAGCTTGAATGTGTTCCTCTTACTCAATAG
Protein sequence

>MS.gene90413.t1

MEMIHQEKSEINSIPGSGSSCLYDLFCTETPSLNSQSQRERWMLSGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDSLVNLGGNTLINKKYEACMPSYIKKPKPNSSIEERSDFIRRKYELQQFLDSEENLICPFIPSHARTTSSSQSSSSSYNPPQEKKRYDKQTTRNRIGLSFRNSWGRKDSESKSTKKSNSLAGMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSIMESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ